Table of Contents
Overview
ACTB is one of a number of genes affected by aberrant somatic hypermutation in B-cell lymphomas. The function of mutations in ACTB and ACTG1 have not yet been determined.1
Relevance tier by entity
| Entity | Tier | Description |
|---|---|---|
| 1 | high-confidence MZL gene | |
| 1 | high-confidence PMBL/cHL/GZL gene2 | |
| 1 | high-confidence DLBCL gene, hypermutated3 | |
| 1 | high-confidence FL gene, hypermutated |
Mutation incidence in large patient cohorts (GAMBL reanalysis)
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Cannot include /FL_ACTB.md - does not exist yet
Mutation pattern and selective pressure estimates
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aSHM regions
| chr_name | hg19_start | hg19_end | region | regulatory_comment |
|---|---|---|---|---|
| chr7 | 5568297 | 5570856 | TSS | active_promoter |
ACTB Hotspots
| Chromosome | Coordinate (hg19) | ref>alt | HGVSp |
|---|---|---|---|
| chr7 | 5569176 | G>A | P38L |
| chr7 | 5569024 | A>C | M44R |
| chr7 | 5569018 | C>T | G46D |
| chr7 | 5569006 | T>C | K50R |
| chr7 | 5568978 | C>A | Q59H |
| chr7 | 5568975 | G>C | S60R |
| chr7 | 5568958 | G>A | T66I |
| chr7 | 5568955 | A>G | L67P |
| chr7 | 5568950 | A>T | Y69N |
| chr7 | 5568923 | T>C | N78D |
| chr7 | 5568920 | A>C | W79G |
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Expression
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References
1.
Witjes L, Van Troys M, Verhasselt B, Ampe C.
Prevalence of Cytoplasmic Actin Mutations in Diffuse
Large B-Cell Lymphoma and Multiple Myeloma: A
Functional Assessment Based on Actin Three-Dimensional
Structures. Int J Mol Sci. 2020 Apr 27;21(9):3093. PMCID: PMC7247664
2.
Wienand K, Chapuy B, Stewart C, Dunford AJ, Wu
D, Kim J, Kamburov A, Wood TR, Cader FZ, Ducar MD, Thorner AR, Nag A,
Heubeck AT, Buonopane MJ, Redd RA, Bojarczuk K, Lawton LN, Armand P,
Rodig SJ, Fromm JR, Getz G, Shipp MA. Genomic analyses of flow-sorted
Hodgkin Reed-Sternberg cells reveal complementary
mechanisms of immune evasion. Blood Adv. 2019 Dec 10;3(23):4065–4080.
PMCID: PMC6963251
3.
Lohr
JG, Stojanov P, Lawrence MS, Auclair D, Chapuy B, Sougnez C,
Cruz-Gordillo P, Knoechel B, Asmann YW, Slager SL, Novak AJ, Dogan A,
Ansell SM, Link BK, Zou L, Gould J, Saksena G, Stransky N,
Rangel-Escareño C, Fernandez-Lopez JC, Hidalgo-Miranda A,
Melendez-Zajgla J, Hernández-Lemus E, Schwarz-Cruz y Celis A,
Imaz-Rosshandler I, Ojesina AI, Jung J, Pedamallu CS, Lander ES,
Habermann TM, Cerhan JR, Shipp MA, Getz G, Golub TR. Discovery and
prioritization of somatic mutations in diffuse large B-cell lymphoma (DLBCL) by
whole-exome sequencing. Proc Natl Acad Sci U S A. 2012 Mar
6;109(10):3879–3884. PMCID: PMC3309757


