CD79A
History
| Entity | Tier | Description |
|---|---|---|
| 2 | relevance in MZL not firmly established | |
| 2 | relevance in BL not firmly established |
Mutation incidence in large patient cohorts (GAMBL reanalysis)
| Entity | source | frequency (%) |
|---|---|---|
| BL | GAMBL genomes+capture | 0.23 |
| BL | Thomas cohort | NA |
| BL | Panea cohort | NA |
Mutation pattern and selective pressure estimates
| Entity | aSHM | Significant selection | dN/dS (missense) | dN/dS (nonsense) |
|---|---|---|---|---|
| BL | No | No | 0.000 | 0.000 |
| DLBCL | No | No | 1.810 | 16.146 |
| FL | No | No | 3.676 | 33.801 |
[!NOTE] First described in BL in 2022 by Burkhardt B
## CD79A Hotspots
| Chromosome | Coordinate (hg19) | ref>alt | HGVSp |
|---|---|---|---|
| chr19 | 42384963 | T>A | Y199* |
| chr19 | 42384963 | T>G | Y199* |
View coding variants in ProteinPaint hg19 or hg38
View all variants in GenomePaint hg19 or hg38
## CD79A
Expression
## References 1. Rossi D,
Trifonov V, Fangazio M, Bruscaggin A, Rasi S, Spina V, Monti S, Vaisitti
T, Arruga F, Famà R, Ciardullo C, Greco M, Cresta S, Piranda D, Holmes
A, Fabbri G, Messina M, Rinaldi A, Wang J, Agostinelli C, Piccaluga PP,
Lucioni M, Tabbò F, Serra R, Franceschetti S, Deambrogi C, Daniele G,
Gattei V, Marasca R, Facchetti F, Arcaini L, Inghirami G, Bertoni F,
Pileri SA, Deaglio S, Foà R, Dalla-Favera R, Pasqualucci L, Rabadan R,
Gaidano G. The coding genome of splenic marginal zone lymphoma:
activation of NOTCH2 and other pathways regulating marginal zone
development. J Exp Med. 2012 Aug 27;209(9):1537–1551. PMCID: PMC3428941
2. Burkhardt B, Michgehl U, Rohde J, Erdmann T, Berning P, Reutter K,
Rohde M, Borkhardt A, Burmeister T, Dave S, Tzankov A, Dugas M, Sandmann
S, Fend F, Finger J, Mueller S, Gökbuget N, Haferlach T, Kern W,
Hartmann W, Klapper W, Oschlies I, Richter J, Kontny U, Lutz M,
Maecker-Kolhoff B, Ott G, Rosenwald A, Siebert R, von Stackelberg A,
Strahm B, Woessmann W, Zimmermann M, Zapukhlyak M, Grau M, Lenz G.
Clinical relevance of molecular characteristics in Burkitt lymphoma
differs according to age. Nat Commun. 2022 Jul 6;13(1):3881. PMCID:
PMC9259584


