HNRNPH1
Overview
Non-coding mutations, including synonymous and intronic mutations, are enriched at splicing signals in exon 4 of HNRNPH1.
Experimental Evidence
The common HNRNPH1 mutations cause deregulated splicing and increased expression of the hnRNP H1 protein. This overexpression is linked to enhanced cell proliferation and survival, contributing to the aggressive nature of MCL.1 Although initially characterized in MCL, the same pattern of mutations appears in a small number of DLBCLs.
History
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timeline
title Publication timing
2020-07-30 : Pararajalingam : MCL
Relevance tier by entity
| Entity | Tier | Description |
|---|---|---|
 |
2-EE | high-confidence DLBCL gene1 |
 |
1-EE | high-confidence MCL gene1 |
Mutation incidence in large patient cohorts (GAMBL reanalysis)
| Entity | source | frequency (%) |
|---|---|---|
| DLBCL | GAMBL genomes | 2.10 |
| DLBCL | Schmitz cohort | 3.19 |
| DLBCL | Reddy cohort | 1.40 |
| DLBCL | Chapuy cohort | 3.42 |
| MCL | GAMBL genomes | 3.79 |
Mutation pattern and selective pressure estimates
| Entity | aSHM | Significant selection | dN/dS (missense) | dN/dS (nonsense) |
|---|---|---|---|---|
| BL | No | No | 1.573 | 0.000 |
| DLBCL | No | No | 2.337 | 10.139 |
| FL | No | No | 0.000 | 0.000 |
HNRNPH1 Hotspots
| Chromosome | Coordinate (hg19) | ref>alt | HGVSp |
|---|---|---|---|
| chr5 | 179046407 | C>A | G133= |
View coding variants in ProteinPaint hg19 or hg38
View all variants in GenomePaint hg19 or hg38
HNRNPH1 Expression
References
1.
Pararajalingam P, Coyle KM, Arthur SE, Thomas
N, Alcaide M, Meissner B, Boyle M, Qureshi Q, Grande BM, Rushton C,
Slack GW, Mungall AJ, Tam CS, Agarwal R, Dawson SJ, Lenz G,
Balasubramanian S, Gascoyne RD, Steidl C, Connors J, Villa D, Audas TE,
Marra MA, Johnson NA, Scott DW, Morin RD. Coding and noncoding drivers
of mantle cell lymphoma identified through exome and genome sequencing.
Blood. 2020 Jul 30;136(5):572–584. PMCID: PMC7440974