Origins of PMBL genes

--- config: sankey: showValues: false linkColor: target width: 800 height: 550 nodeAlignment: right --- sankey-beta Tiacci 2018, Tier 1 PMBL genes, 1 Tiacci 2018, Tier 2 PMBL genes, 9 Duns 2021, Tier 1 PMBL genes, 5 Duns 2021, Tier 2 PMBL genes, 8 Desch 2020, Tier 1 PMBL genes, 1 Desch 2020, Tier 2 PMBL genes, 9 Weniger 2006, Tier 1 PMBL genes, 1 Weniger 2006, Tier 2 PMBL genes, 1 Gomez 2023, Tier 1 PMBL genes, 2 Gomez 2023, Tier 2 PMBL genes, 5 Wienand 2019, Tier 1 PMBL genes, 4 Wienand 2019, Tier 2 PMBL genes, 3 Otto 2012, Tier 1 PMBL genes, 2 Reichel 2015, Tier 1 PMBL genes, 11 Reichel 2015, Tier 2 PMBL genes, 18 Sarkozy 2021, Tier 1 PMBL genes, 5 Sarkozy 2021, Tier 2 PMBL genes, 6 Mottok 2019, Tier 1 PMBL genes, 6 Mottok 2019, Tier 2 PMBL genes, 15 PMBL genes, PMBL-exome, 13 PMBL-exome, Duns 2021, 13 PMBL genes, PMBL-exome, 10 PMBL-exome, Tiacci 2018, 10 PMBL genes, PMBL-panel, 10 PMBL-panel, Desch 2020, 10 PMBL genes, PMBL-exome, 7 PMBL-exome, Gomez 2023, 7 PMBL genes, PMBL-Sanger, 2 PMBL-Sanger, Weniger 2006, 2 PMBL genes, PMBL-exome, 7 PMBL-exome, Wienand 2019, 7 PMBL genes, PMBL-exome, 29 PMBL-exome, Reichel 2015, 29 PMBL genes, PMBL-Array/Sanger, 2 PMBL-Array/Sanger, Otto 2012, 2 PMBL genes, PMBL-exome, 11 PMBL-exome, Sarkozy 2021, 11 PMBL genes, PMBL-exome, 21 PMBL-exome, Mottok 2019, 21

Tier 1 PMBL genes

76 total

Gene Tier First PMBL evidence Other entities
ACTB 1 wienandGenomicAnalysesFlowsorted2019b? lohrDiscoveryPrioritizationSomatic2012a?
ARID1A 1 wienandGenomicAnalysesFlowsorted2019b? 1,2,rossiCodingGenomeSplenic2012c?,krysiakRecurrentSomaticMutations2017b?
ARID5B 1 3 4
B2M 1 reichelFlowSortingExome2015a? 5,6
BIRC6 1 sarkozyMutationalLandscapeGray2021a? 4
BTG1 1 sarkozyMutationalLandscapeGray2021a? 6,burkhardtClinicalRelevanceMolecular2022b?
CD58 1 schneiderAlterationsCD58Gene2015a? 6
CD83 1 dunsCharacterizationDLBCLPMBL2021b? 7,8,russler-germainMutationsAssociatedProgression2023b?
CDKN2A 1 7,9,spinaGeneticsNodalMarginal2016b?
CHD8 1 4,9
CIITA 1 mottokGenomicAlterationsCIITA2015b? 6
CISH 1 mottokIntegrativeGenomicAnalysis2019b?
CREBBP 1 dunsCharacterizationDLBCLPMBL2021b? 2,10,pasqualucciInactivatingMutationsAcetyltransferase2011a?
CSF2RB 1 reichelFlowSortingExome2015a?
DDX3X 1 mottokIntegrativeGenomicAnalysis2019b? 11,schmitzGeneticsPathogenesisDiffuse2018a?
DTX1 1 3 8,schmitzGeneticsPathogenesisDiffuse2018a?,rossiCodingGenomeSplenic2012c?
DUSP2 1 dunsCharacterizationDLBCLPMBL2021b? 7
EBF1 1 reichelFlowSortingExome2015a? 12,13
EEF1A1 1 reichelFlowSortingExome2015a? hubschmannMutationalMechanismsShaping2021b?
ETS1 1 6,8
EWSR1 1 5
EZH2 1 mottokIntegrativeGenomicAnalysis2019b? 2,morinSomaticMutationsAltering2010a?
FAS 1 14,spinaGeneticsNodalMarginal2016b?
FAT1 1 spinaGeneticsNodalMarginal2016b?
FAT4 1 7,10,15
GNA13 1 reichelFlowSortingExome2015a? 2,6
HIST1H1B 1 sarkozyMutationalLandscapeGray2021a? chapuyMolecularSubtypesDiffuse2018b?,krysiakRecurrentSomaticMutations2017b?
HIST1H1C 1 6,8
HIST1H1D 1 7,16,krysiakRecurrentSomaticMutations2017b?
HIST1H1E 1 reichelFlowSortingExome2015a? 7,9,krysiakRecurrentSomaticMutations2017b?
HLA-B 1 wienandGenomicAnalysesFlowsorted2019b?
IL4R 1 viganoSomaticIL4RMutations2018b? dunsCharacterizationDLBCLPMBL2021b?
IRF8 1 mottokIntegrativeGenomicAnalysis2019b? 6,8
ITPKB 1 reichelFlowSortingExome2015a? schmitzGeneticsPathogenesisDiffuse2018a?
JAK1 1 mottokIntegrativeGenomicAnalysis2019b? 1
KMT2C 1 sarkozyMutationalLandscapeGray2021a? 1,15,17
LTB 1 18 8,chapuyMolecularSubtypesDiffuse2018b?
MAP3K14 1 ottoGeneticLesionsTRAF32012a? rossiAlterationBIRC3Multiple2011a?
MS4A1 1 mottokIntegrativeGenomicAnalysis2019b? 19
NFKBIA 1 wienandGenomicAnalysesFlowsorted2019b? 20,russler-germainMutationsAssociatedProgression2023b?
NFKBIE 1 21 5,22
OSBPL10 1 23
P2RY8 1 muppidiLossSignalingGa132014b?,lohrDiscoveryPrioritizationSomatic2012a?
PCLO 1 lohrDiscoveryPrioritizationSomatic2012a?
PHIP 1
PIM1 1 dunsCharacterizationDLBCLPMBL2021b? pasqualucciHypermutationMultipleProtooncogenes2001a?,burkhardtClinicalRelevanceMolecular2022b?
PIM2 1 reichelFlowSortingExome2015a? 23
PRKDC 1 schmitzGeneticsPathogenesisDiffuse2018a?,hubschmannMutationalMechanismsShaping2021b?
PTPN1 1 gunawardanaRecurrentSomaticMutations2014c?
PTPRD 1 spinaGeneticsNodalMarginal2016b?
RHOA 1 richterRecurrentMutationID32012a?
S1PR2 1 6,muppidiLossSignalingGa132014b?
SGK1 1 dunsCharacterizationDLBCLPMBL2021b? 6
SIN3A 1 9,rossiCodingGenomeSplenic2012c?
SMARCA2 1
SMARCA4 1 1,nadeuGenomicEpigenomicInsights2020b?,krysiakRecurrentSomaticMutations2017b?,richterRecurrentMutationID32012a?
SOCS1 1 wenigerMutationsTumorSuppressor2006a? 6
SPEN 1 sarkozyMutationalLandscapeGray2021a? rossiCodingGenomeSplenic2012c?
STAT3 1 24
STAT6 1 ritzRecurrentMutationsSTAT62009a? yildizActivatingSTAT6Mutations2015c?
TAP1 1 schmitzGeneticsPathogenesisDiffuse2018a?
TBL1XR1 1 25,rossiCodingGenomeSplenic2012c?
TCF3 1 11
TET3 1
TMSB4X 1 albuquerqueEnhancingKnowledgeDiscovery2017a?
TNFAIP3 1 schmitzTNFAIP3A20Tumor2009a? rossiAlterationBIRC3Multiple2011a?,compagnoMutationsMultipleGenes2009a?
TNFRSF1B 1
TP53 1 tiacciPervasiveMutationsJAKSTAT2018b? 6,26,27,rossiCodingGenomeSplenic2012c?
TRAF3 1 ottoGeneticLesionsTRAF32012a? 28,rossiAlterationBIRC3Multiple2011a?
UBE2A 1 reichelFlowSortingExome2015a? 4
UBR5 1 1,5
UNC5C 1
VPS13B 1
WEE1 1 reichelFlowSortingExome2015a? schmitzGeneticsPathogenesisDiffuse2018a?
XPO1 1 jardinRecurrentMutationsExportin2016a? 25
ZFP36L1 1 reichelFlowSortingExome2015a? 6,8

Tier 2 PMBL genes

82 total

Gene Tier First PMBL evidence Other entities
ABCA13 2 sarkozyMutationalLandscapeGray2021a? spinaGeneticsNodalMarginal2016b?
ACTG1 2 18 hubschmannMutationalMechanismsShaping2021b?,spinaGeneticsNodalMarginal2016b?
AKAP6 2 tiacciPervasiveMutationsJAKSTAT2018b?
ARIH2 2 reichelFlowSortingExome2015a?
AXDND1 2 3
BCL2 2 sarkozyMutationalLandscapeGray2021a? 6,29,burkhardtClinicalRelevanceMolecular2022b?
BCL7A 2 reichelFlowSortingExome2015a? 9,23,krysiakRecurrentSomaticMutations2017b?
BIRC3 2 dunsCharacterizationDLBCLPMBL2021b? 23,26,rossiAlterationBIRC3Multiple2011a?
CCND3 2 18 6,16,richterRecurrentMutationID32012a?
CDH2 2 18
CDH5 2 3
CXCR5 2 mottokIntegrativeGenomicAnalysis2019b? schmitzGeneticsPathogenesisDiffuse2018a?
DGKB 2 tiacciPervasiveMutationsJAKSTAT2018b?
DMD 2 reichelFlowSortingExome2015a?
DNAH12 2 wienandGenomicAnalysesFlowsorted2019b?
EGR1 2 reichelFlowSortingExome2015a? rossiCodingGenomeSplenic2012c?,krysiakRecurrentSomaticMutations2017b?
EPHA7 2 mottokIntegrativeGenomicAnalysis2019b?
EZR 2 18
FOXO1 2 dunsCharacterizationDLBCLPMBL2021b? 6,11
GCSAM 2 mottokIntegrativeGenomicAnalysis2019b?
GPR126 2 wenigerMutationsTumorSuppressor2006a?
HECW2 2 reichelFlowSortingExome2015a?
HELLS 2 reichelFlowSortingExome2015a?
HIST1H2BC 2 mottokIntegrativeGenomicAnalysis2019b? 4,krysiakRecurrentSomaticMutations2017b?
HIST1H3B 2 reichelFlowSortingExome2015a? 1
HIST1H4C 2 reichelFlowSortingExome2015a?
HIST1H4E 2 mottokIntegrativeGenomicAnalysis2019b?
HIST1H4J 2 mottokIntegrativeGenomicAnalysis2019b? 8
HLA-A 2 18
HLA-C 2 3
HRNR 2 dunsCharacterizationDLBCLPMBL2021b?
IGLL5 2 18 8,russler-germainMutationsAssociatedProgression2023b?
IKBKB 2 wienandGenomicAnalysesFlowsorted2019b? 4,rossiAlterationBIRC3Multiple2011a?
IL13RA1 2 mottokIntegrativeGenomicAnalysis2019b?
IL1RAPL2 2 mottokIntegrativeGenomicAnalysis2019b?
IRF2BP2 2 mottokIntegrativeGenomicAnalysis2019b?
IRF4 2 mottokIntegrativeGenomicAnalysis2019b? 6
ITGB2 2
ITPR3 2 tiacciPervasiveMutationsJAKSTAT2018b? 2
JUNB 2 mottokIntegrativeGenomicAnalysis2019b? 4
KLF2 2 18 16,28
KMT2D 2 18 6,9,26,rossiCodingGenomeSplenic2012c?
LIMD2 2 3
LPHN3 2 dunsCharacterizationDLBCLPMBL2021b?
LRRN3 2 sarkozyMutationalLandscapeGray2021a? 7
MAGEC2 2 mottokIntegrativeGenomicAnalysis2019b?
MCL1 2 dunsCharacterizationDLBCLPMBL2021b? 4,8
MFHAS1 2 sarkozyMutationalLandscapeGray2021a?
MPDZ 2 reichelFlowSortingExome2015a? 7
MYB 2 18 4
MYC 2 dunsCharacterizationDLBCLPMBL2021b? 16,30,pasqualucciHypermutationMultipleProtooncogenes2001a?
NCOR2 2 sarkozyMutationalLandscapeGray2021a? 11,spinaGeneticsNodalMarginal2016b?
NEK1 2 reichelFlowSortingExome2015a?
NFKB2 2 mottokIntegrativeGenomicAnalysis2019b? 4
NSD2 2 26
NUP214 2 tiacciPervasiveMutationsJAKSTAT2018b?
OR13C2 2 3
PCBP1 2 11
PCDH7 2
PRUNE2 2 tiacciPervasiveMutationsJAKSTAT2018b?
RANBP2 2 reichelFlowSortingExome2015a?
RBM38 2 wienandGenomicAnalysesFlowsorted2019b?
RDH12 2
RELN 2 sarkozyMutationalLandscapeGray2021a?
RFTN1 2 dunsCharacterizationDLBCLPMBL2021b? 23
RGS1 2 mottokIntegrativeGenomicAnalysis2019b?
SCN9A 2
SENP7 2 reichelFlowSortingExome2015a?
SETD5 2 tiacciPervasiveMutationsJAKSTAT2018b? 4
SETDB1 2 reichelFlowSortingExome2015a?
SIAH2 2 reichelFlowSortingExome2015a? hubschmannMutationalMechanismsShaping2021b?
SMAD3 2
STAT5B 2 tiacciPervasiveMutationsJAKSTAT2018b? 1
STRAP 2
TBC1D15 2 reichelFlowSortingExome2015a?
TICRR 2 reichelFlowSortingExome2015a?
TNIP1 2 tiacciPervasiveMutationsJAKSTAT2018b?
TRIP11 2 reichelFlowSortingExome2015a?
VMP1 2 mottokIntegrativeGenomicAnalysis2019b?
WDR87 2 dunsCharacterizationDLBCLPMBL2021b?
ZCCHC11 2 tiacciPervasiveMutationsJAKSTAT2018b?
ZNF217 2 reichelFlowSortingExome2015a? hubschmannMutationalMechanismsShaping2021b?

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