Changes in 035eccc: add flags

				FOXC1.md
			
          @@ -35,7 +35,11 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/F

           ![image](images/proteinpaint/FOXC1.svg)

          -## References

          -1. *Schmitz R, Wright GW, Huang DW, Johnson CA, Phelan JD, Wang JQ, Roulland S, Kasbekar M, Young RM, Shaffer AL, Hodson DJ, Xiao W, Yu X, Yang Y, Zhao H, Xu W, Liu X, Zhou B, Du W, Chan WC, Jaffe ES, Gascoyne RD, Connors JM, Campo E, Lopez-Guillermo A, Rosenwald A, Ott G, Delabie J, Rimsza LM, Tay Kuang Wei K, Zelenetz AD, Leonard JP, Bartlett NL, Tran B, Shetty J, Zhao Y, Soppet DR, Pittaluga S, Wilson WH, Staudt LM. Genetics and Pathogenesis of Diffuse Large B-Cell Lymphoma. N Engl J Med. 2018 Apr 12;378(15):1396-1407. doi: 10.1056/NEJMoa1801445. PMID: 29641966; PMCID: PMC6010183.*

          +

           ## FOXC1 Expression

           ![image](images/gene_expression/FOXC1_by_pathology.svg)

          +

          +## References

          +1. *Schmitz R, Wright GW, Huang DW, Johnson CA, Phelan JD, Wang JQ, Roulland S, Kasbekar M, Young RM, Shaffer AL, Hodson DJ, Xiao W, Yu X, Yang Y, Zhao H, Xu W, Liu X, Zhou B, Du W, Chan WC, Jaffe ES, Gascoyne RD, Connors JM, Campo E, Lopez-Guillermo A, Rosenwald A, Ott G, Delabie J, Rimsza LM, Tay Kuang Wei K, Zelenetz AD, Leonard JP, Bartlett NL, Tran B, Shetty J, Zhao Y, Soppet DR, Pittaluga S, Wilson WH, Staudt LM. Genetics and Pathogenesis of Diffuse Large B-Cell Lymphoma. N Engl J Med. 2018 Apr 12;378(15):1396-1407. doi: 10.1056/NEJMoa1801445. PMID: 29641966; PMCID: PMC6010183.*

          +

          +<!-- FLAGGED FOR TIER 2 -->

				HLA-DMA.md
			
          @@ -1,5 +1,5 @@

           # HLA-DMA

          -

          +## Overview

           Mutations in this gene are relatively rare in DLBCL overall. *Without further support, this gene may be migrated to Tier 2.* 

           ## Relevance tier by entity

          @@ -34,5 +34,9 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM

           View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/HLA-DMA.html)  or [hg38](https://morinlab.github.io/LLMPP/GAMBL/HLA-DMA_hg38.html)

           ![image](images/proteinpaint/HLA-DMA.svg)

          +

           ## HLA-DMA Expression

           ![image](images/gene_expression/HLA-DMA_by_pathology.svg)

          +

          +<!-- FLAGGED FOR TIER 2 -->

          +

				HLA-DQA1.md
			
          @@ -28,5 +28,9 @@ Mutations in this gene are relatively rare in DLBCL overall. *Without further su

           > [!NOTE]

           > First described in DLBCL in 2021 by [Hübschmann D](https://pubmed.ncbi.nlm.nih.gov/33953289)

          +

           ## HLA-DQA1 Expression

           ![image](images/gene_expression/HLA-DQA1_by_pathology.svg)

          +

          +<!-- FLAGGED FOR TIER 2 -->

          +<!-- ORPHANED -->

				IL16.md
			
          @@ -34,5 +34,9 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM

           View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/IL16.html)  or [hg38](https://morinlab.github.io/LLMPP/GAMBL/IL16_hg38.html)

           ![image](images/proteinpaint/IL16.svg)

          +

           ## IL16 Expression

           ![image](images/gene_expression/IL16_by_pathology.svg)

          +

          +<!-- FLAGGED FOR TIER 2 -->

          +

				LYN.md
			
          @@ -36,3 +36,5 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/L

           ![image](images/proteinpaint/LYN.svg)

           ## LYN Expression

           ![image](images/gene_expression/LYN_by_pathology.svg)

          +

          +<!-- FLAGGED FOR TIER 2 -->

				NCOR2.md
			
          @@ -46,5 +46,8 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM

           View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/NCOR2.html)  or [hg38](https://morinlab.github.io/LLMPP/GAMBL/NCOR2_hg38.html)

           ![image](images/proteinpaint/NCOR2.svg)

          +

           ## NCOR2 Expression

           ![image](images/gene_expression/NCOR2_by_pathology.svg)

          +

          +<!-- FLAGGED FOR TIER 2 -->

				NFKB1.md
			
          @@ -43,5 +43,8 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM

           View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/NFKB1.html)  or [hg38](https://morinlab.github.io/LLMPP/GAMBL/NFKB1_hg38.html)

           ![image](images/proteinpaint/NFKB1.svg)

          +

           ## NFKB1 Expression

           ![image](images/gene_expression/NFKB1_by_pathology.svg)

          +

          +<!-- FLAGGED FOR TIER 2 -->

...	...	@@ -46,5 +46,8 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
46	46	View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/NCOR2.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/NCOR2_hg38.html)
47	47
48	48	![image](images/proteinpaint/NCOR2.svg)
	49	+
49	50	## NCOR2 Expression
50	51	![image](images/gene_expression/NCOR2_by_pathology.svg)
	52	+
	53	+<!-- FLAGGED FOR TIER 2 -->

...	...	@@ -35,7 +35,11 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/F
35	35
36	36	![image](images/proteinpaint/FOXC1.svg)
37	37
38		-## References
39		-1. Schmitz R, Wright GW, Huang DW, Johnson CA, Phelan JD, Wang JQ, Roulland S, Kasbekar M, Young RM, Shaffer AL, Hodson DJ, Xiao W, Yu X, Yang Y, Zhao H, Xu W, Liu X, Zhou B, Du W, Chan WC, Jaffe ES, Gascoyne RD, Connors JM, Campo E, Lopez-Guillermo A, Rosenwald A, Ott G, Delabie J, Rimsza LM, Tay Kuang Wei K, Zelenetz AD, Leonard JP, Bartlett NL, Tran B, Shetty J, Zhao Y, Soppet DR, Pittaluga S, Wilson WH, Staudt LM. Genetics and Pathogenesis of Diffuse Large B-Cell Lymphoma. N Engl J Med. 2018 Apr 12;378(15):1396-1407. doi: 10.1056/NEJMoa1801445. PMID: 29641966; PMCID: PMC6010183.
	38	+
40	39	## FOXC1 Expression
41	40	![image](images/gene_expression/FOXC1_by_pathology.svg)
	41	+
	42	+## References
	43	+1. Schmitz R, Wright GW, Huang DW, Johnson CA, Phelan JD, Wang JQ, Roulland S, Kasbekar M, Young RM, Shaffer AL, Hodson DJ, Xiao W, Yu X, Yang Y, Zhao H, Xu W, Liu X, Zhou B, Du W, Chan WC, Jaffe ES, Gascoyne RD, Connors JM, Campo E, Lopez-Guillermo A, Rosenwald A, Ott G, Delabie J, Rimsza LM, Tay Kuang Wei K, Zelenetz AD, Leonard JP, Bartlett NL, Tran B, Shetty J, Zhao Y, Soppet DR, Pittaluga S, Wilson WH, Staudt LM. Genetics and Pathogenesis of Diffuse Large B-Cell Lymphoma. N Engl J Med. 2018 Apr 12;378(15):1396-1407. doi: 10.1056/NEJMoa1801445. PMID: 29641966; PMCID: PMC6010183.
	44	+
	45	+<!-- FLAGGED FOR TIER 2 -->

...	...	@@ -1,5 +1,5 @@
1	1	# HLA-DMA
2		-
	2	+## Overview
3	3	Mutations in this gene are relatively rare in DLBCL overall. Without further support, this gene may be migrated to Tier 2.
4	4
5	5	## Relevance tier by entity
...	...	@@ -34,5 +34,9 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
34	34	View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/HLA-DMA.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/HLA-DMA_hg38.html)
35	35
36	36	![image](images/proteinpaint/HLA-DMA.svg)
	37	+
37	38	## HLA-DMA Expression
38	39	![image](images/gene_expression/HLA-DMA_by_pathology.svg)
	40	+
	41	+<!-- FLAGGED FOR TIER 2 -->
	42	+

...	...	@@ -28,5 +28,9 @@ Mutations in this gene are relatively rare in DLBCL overall. *Without further su
28	28
29	29	> [!NOTE]
30	30	> First described in DLBCL in 2021 by [Hübschmann D](https://pubmed.ncbi.nlm.nih.gov/33953289)
	31	+
31	32	## HLA-DQA1 Expression
32	33	![image](images/gene_expression/HLA-DQA1_by_pathology.svg)
	34	+
	35	+<!-- FLAGGED FOR TIER 2 -->
	36	+<!-- ORPHANED -->

...	...	@@ -34,5 +34,9 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
34	34	View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/IL16.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/IL16_hg38.html)
35	35
36	36	![image](images/proteinpaint/IL16.svg)
	37	+
37	38	## IL16 Expression
38	39	![image](images/gene_expression/IL16_by_pathology.svg)
	40	+
	41	+<!-- FLAGGED FOR TIER 2 -->
	42	+

...	...	@@ -36,3 +36,5 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/L
36	36	![image](images/proteinpaint/LYN.svg)
37	37	## LYN Expression
38	38	![image](images/gene_expression/LYN_by_pathology.svg)
	39	+
	40	+<!-- FLAGGED FOR TIER 2 -->

...	...	@@ -43,5 +43,8 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
43	43	View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/NFKB1.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/NFKB1_hg38.html)
44	44
45	45	![image](images/proteinpaint/NFKB1.svg)
	46	+
46	47	## NFKB1 Expression
47	48	![image](images/gene_expression/NFKB1_by_pathology.svg)
	49	+
	50	+<!-- FLAGGED FOR TIER 2 -->