0534aace2ff9228dd876a5580b914f0e5d4783f3
papers/paneaWholeGenomeLandscape2019.md
| ... | ... | @@ -72,7 +72,7 @@ All other BL studies, BL Tier 2, 111 |
| 72 | 72 | |[PCDHA11](../PCDHA11)|2 |★ ☆ ☆ ☆ ☆| |
| 73 | 73 | |[PDZRN3](../PDZRN3)|2 |★ ☆ ☆ ☆ ☆| |
| 74 | 74 | |[PIK3R1](../PIK3R1)|2 |★ ☆ ☆ ☆ ☆| |
| 75 | -|[PLCG2](../PLCG2)|2 |☆ ☆ ☆ ☆ ☆| |
|
| 75 | +|[PLCG2](../PLCG2)|2 |★ ★ ★ ☆ ☆| |
|
| 76 | 76 | |[PXDNL](../PXDNL)|2 |☆ ☆ ☆ ☆ ☆| |
| 77 | 77 | |[RAC2](../RAC2)|2 |☆ ☆ ☆ ☆ ☆| |
| 78 | 78 | |[RNF144B](../RNF144B)|2 |☆ ☆ ☆ ☆ ☆| |
papers/paneaWholeGenomeLandscape2019.pdf
papers/paneaWholeGenomeLandscape2019_tmp.html
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| 368 | -<h1 id="paneawholegenomelandscape2019">@paneaWholeGenomeLandscape2019</h1> |
|
| 369 | -<h2 id="summary-of-novel-genes">Summary of novel genes</h2> |
|
| 370 | -<table> |
|
| 371 | -<thead> |
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| 372 | -<tr> |
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| 373 | -<th style="text-align:center">Entity</th> |
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| 374 | -<th style="text-align:center">Tier 1 genes</th> |
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| 375 | -<th style="text-align:center">Tier 2 genes</th> |
|
| 376 | -</tr> |
|
| 377 | -</thead> |
|
| 378 | -<tbody> |
|
| 379 | -<tr> |
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| 380 | -<td style="text-align:center">BL</td> |
|
| 381 | -<td style="text-align:center">4</td> |
|
| 382 | -<td style="text-align:center">41</td> |
|
| 383 | -</tr> |
|
| 384 | -</tbody> |
|
| 385 | -</table> |
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| 386 | -<pre><code class="language-mermaid"><div class="mermaid">--- |
|
| 387 | -config: |
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| 388 | - sankey: |
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| 389 | - showValues: true |
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| 390 | - linkColor: target |
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| 391 | - width: 600 |
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| 392 | - height: 300 |
|
| 393 | - nodeAlignment: right |
|
| 394 | - prefix: '(' |
|
| 395 | - suffix: ' genes)' |
|
| 396 | ---- |
|
| 397 | -sankey-beta |
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| 398 | -This study, New Tier 1, 4 |
|
| 399 | -New Tier 1, BL Tier 1, 4 |
|
| 400 | -This study, New Tier 2, 41 |
|
| 401 | -New Tier 2, BL Tier 2, 41 |
|
| 402 | -All other BL studies, BL Tier 1, 25 |
|
| 403 | -All other BL studies, BL Tier 2, 111 |
|
| 404 | -</div></code></pre> |
|
| 405 | -<h2 id="novel-genes-reported-in-this-study">Novel genes reported in this study</h2> |
|
| 406 | -<h3 id="tier-1">Tier 1</h3> |
|
| 407 | -<table> |
|
| 408 | -<thead> |
|
| 409 | -<tr> |
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| 410 | -<th style="text-align:left">New gene</th> |
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| 411 | -<th style="text-align:center">BL tier</th> |
|
| 412 | -</tr> |
|
| 413 | -</thead> |
|
| 414 | -<tbody> |
|
| 415 | -<tr> |
|
| 416 | -<td style="text-align:left"><a href="../BMP7">BMP7</a></td> |
|
| 417 | -<td style="text-align:center">1</td> |
|
| 418 | -</tr> |
|
| 419 | -<tr> |
|
| 420 | -<td style="text-align:left"><a href="../EIF4A1">EIF4A1</a></td> |
|
| 421 | -<td style="text-align:center">1</td> |
|
| 422 | -</tr> |
|
| 423 | -<tr> |
|
| 424 | -<td style="text-align:left"><a href="../EPPK1">EPPK1</a></td> |
|
| 425 | -<td style="text-align:center">1</td> |
|
| 426 | -</tr> |
|
| 427 | -<tr> |
|
| 428 | -<td style="text-align:left"><a href="../HNRNPU">HNRNPU</a></td> |
|
| 429 | -<td style="text-align:center">1</td> |
|
| 430 | -</tr> |
|
| 431 | -</tbody> |
|
| 432 | -</table> |
|
| 433 | -<h3 id="tier-2">Tier 2</h3> |
|
| 434 | -<table> |
|
| 435 | -<thead> |
|
| 436 | -<tr> |
|
| 437 | -<th style="text-align:left">New gene</th> |
|
| 438 | -<th style="text-align:center">BL tier</th> |
|
| 439 | -<th style="text-align:center">Rating of reviewed variants</th> |
|
| 440 | -</tr> |
|
| 441 | -</thead> |
|
| 442 | -<tbody> |
|
| 443 | -<tr> |
|
| 444 | -<td style="text-align:left"><a href="../ALPK2">ALPK2</a></td> |
|
| 445 | -<td style="text-align:center">2</td> |
|
| 446 | -<td style="text-align:center">★ ☆ ☆ ☆ ☆</td> |
|
| 447 | -</tr> |
|
| 448 | -<tr> |
|
| 449 | -<td style="text-align:left"><a href="../CD79B">CD79B</a></td> |
|
| 450 | -<td style="text-align:center">2</td> |
|
| 451 | -<td style="text-align:center">★ ★ ☆ ☆ ☆</td> |
|
| 452 | -</tr> |
|
| 453 | -<tr> |
|
| 454 | -<td style="text-align:left"><a href="../CD83">CD83</a></td> |
|
| 455 | -<td style="text-align:center">2</td> |
|
| 456 | -<td style="text-align:center">★ ★ ★ ☆ ☆</td> |
|
| 457 | -</tr> |
|
| 458 | -<tr> |
|
| 459 | -<td style="text-align:left"><a href="../CTCF">CTCF</a></td> |
|
| 460 | -<td style="text-align:center">2</td> |
|
| 461 | -<td style="text-align:center">★ ☆ ☆ ☆ ☆</td> |
|
| 462 | -</tr> |
|
| 463 | -<tr> |
|
| 464 | -<td style="text-align:left"><a href="../CXCR4">CXCR4</a></td> |
|
| 465 | -<td style="text-align:center">2</td> |
|
| 466 | -<td style="text-align:center">★ ★ ★ ★ ☆</td> |
|
| 467 | -</tr> |
|
| 468 | -<tr> |
|
| 469 | -<td style="text-align:left"><a href="../DNMT1">DNMT1</a></td> |
|
| 470 | -<td style="text-align:center">2</td> |
|
| 471 | -<td style="text-align:center">★ ☆ ☆ ☆ ☆</td> |
|
| 472 | -</tr> |
|
| 473 | -<tr> |
|
| 474 | -<td style="text-align:left"><a href="../DTX1">DTX1</a></td> |
|
| 475 | -<td style="text-align:center">2</td> |
|
| 476 | -<td style="text-align:center">★ ☆ ☆ ☆ ☆</td> |
|
| 477 | -</tr> |
|
| 478 | -<tr> |
|
| 479 | -<td style="text-align:left"><a href="../ETS1">ETS1</a></td> |
|
| 480 | -<td style="text-align:center">2</td> |
|
| 481 | -<td style="text-align:center">★ ☆ ☆ ☆ ☆</td> |
|
| 482 | -</tr> |
|
| 483 | -<tr> |
|
| 484 | -<td style="text-align:left"><a href="../FZD3">FZD3</a></td> |
|
| 485 | -<td style="text-align:center">2</td> |
|
| 486 | -<td style="text-align:center">★ ☆ ☆ ☆ ☆</td> |
|
| 487 | -</tr> |
|
| 488 | -<tr> |
|
| 489 | -<td style="text-align:left"><a href="../HIST1H1C">HIST1H1C</a></td> |
|
| 490 | -<td style="text-align:center">2</td> |
|
| 491 | -<td style="text-align:center">★ ★ ☆ ☆ ☆</td> |
|
| 492 | -</tr> |
|
| 493 | -<tr> |
|
| 494 | -<td style="text-align:left"><a href="../HIST1H2AG">HIST1H2AG</a></td> |
|
| 495 | -<td style="text-align:center">2</td> |
|
| 496 | -<td style="text-align:center">★ ★ ☆ ☆ ☆</td> |
|
| 497 | -</tr> |
|
| 498 | -<tr> |
|
| 499 | -<td style="text-align:left"><a href="../HIST1H2AM">HIST1H2AM</a></td> |
|
| 500 | -<td style="text-align:center">2</td> |
|
| 501 | -<td style="text-align:center">☆ ☆ ☆ ☆ ☆</td> |
|
| 502 | -</tr> |
|
| 503 | -<tr> |
|
| 504 | -<td style="text-align:left"><a href="../HIST1H2BK">HIST1H2BK</a></td> |
|
| 505 | -<td style="text-align:center">2</td> |
|
| 506 | -<td style="text-align:center">★ ☆ ☆ ☆ ☆</td> |
|
| 507 | -</tr> |
|
| 508 | -<tr> |
|
| 509 | -<td style="text-align:left"><a href="../HIST1H3D">HIST1H3D</a></td> |
|
| 510 | -<td style="text-align:center">2</td> |
|
| 511 | -<td style="text-align:center">★ ★ ★ ☆ ☆</td> |
|
| 512 | -</tr> |
|
| 513 | -<tr> |
|
| 514 | -<td style="text-align:left"><a href="../HIST1H3H">HIST1H3H</a></td> |
|
| 515 | -<td style="text-align:center">2</td> |
|
| 516 | -<td style="text-align:center">☆ ☆ ☆ ☆ ☆</td> |
|
| 517 | -</tr> |
|
| 518 | -<tr> |
|
| 519 | -<td style="text-align:left"><a href="../HIST1H3I">HIST1H3I</a></td> |
|
| 520 | -<td style="text-align:center">2</td> |
|
| 521 | -<td style="text-align:center">★ ★ ★ ★ ☆</td> |
|
| 522 | -</tr> |
|
| 523 | -<tr> |
|
| 524 | -<td style="text-align:left"><a href="../HIST1H3J">HIST1H3J</a></td> |
|
| 525 | -<td style="text-align:center">2</td> |
|
| 526 | -<td style="text-align:center">☆ ☆ ☆ ☆ ☆</td> |
|
| 527 | -</tr> |
|
| 528 | -<tr> |
|
| 529 | -<td style="text-align:left"><a href="../HIST1H4J">HIST1H4J</a></td> |
|
| 530 | -<td style="text-align:center">2</td> |
|
| 531 | -<td style="text-align:center">★ ★ ☆ ☆ ☆</td> |
|
| 532 | -</tr> |
|
| 533 | -<tr> |
|
| 534 | -<td style="text-align:left"><a href="../IGLL5">IGLL5</a></td> |
|
| 535 | -<td style="text-align:center">2</td> |
|
| 536 | -<td style="text-align:center">★ ★ ★ ★ ☆</td> |
|
| 537 | -</tr> |
|
| 538 | -<tr> |
|
| 539 | -<td style="text-align:left"><a href="../IKZF3">IKZF3</a></td> |
|
| 540 | -<td style="text-align:center">2</td> |
|
| 541 | -<td style="text-align:center">★ ★ ★ ☆ ☆</td> |
|
| 542 | -</tr> |
|
| 543 | -<tr> |
|
| 544 | -<td style="text-align:left"><a href="../IRF8">IRF8</a></td> |
|
| 545 | -<td style="text-align:center">2</td> |
|
| 546 | -<td style="text-align:center">★ ★ ★ ★ ☆</td> |
|
| 547 | -</tr> |
|
| 548 | -<tr> |
|
| 549 | -<td style="text-align:left"><a href="../KCNK10">KCNK10</a></td> |
|
| 550 | -<td style="text-align:center">2</td> |
|
| 551 | -<td style="text-align:center">★ ★ ☆ ☆ ☆</td> |
|
| 552 | -</tr> |
|
| 553 | -<tr> |
|
| 554 | -<td style="text-align:left"><a href="../MCL1">MCL1</a></td> |
|
| 555 | -<td style="text-align:center">2</td> |
|
| 556 | -<td style="text-align:center">★ ★ ★ ★ ☆</td> |
|
| 557 | -</tr> |
|
| 558 | -<tr> |
|
| 559 | -<td style="text-align:left"><a href="../MME">MME</a></td> |
|
| 560 | -<td style="text-align:center">2</td> |
|
| 561 | -<td style="text-align:center">★ ☆ ☆ ☆ ☆</td> |
|
| 562 | -</tr> |
|
| 563 | -<tr> |
|
| 564 | -<td style="text-align:left"><a href="../MTOR">MTOR</a></td> |
|
| 565 | -<td style="text-align:center">2</td> |
|
| 566 | -<td style="text-align:center">★ ☆ ☆ ☆ ☆</td> |
|
| 567 | -</tr> |
|
| 568 | -<tr> |
|
| 569 | -<td style="text-align:left"><a href="../PABPC4L">PABPC4L</a></td> |
|
| 570 | -<td style="text-align:center">2</td> |
|
| 571 | -<td style="text-align:center">★ ★ ☆ ☆ ☆</td> |
|
| 572 | -</tr> |
|
| 573 | -<tr> |
|
| 574 | -<td style="text-align:left"><a href="../PCDHA11">PCDHA11</a></td> |
|
| 575 | -<td style="text-align:center">2</td> |
|
| 576 | -<td style="text-align:center">★ ☆ ☆ ☆ ☆</td> |
|
| 577 | -</tr> |
|
| 578 | -<tr> |
|
| 579 | -<td style="text-align:left"><a href="../PDZRN3">PDZRN3</a></td> |
|
| 580 | -<td style="text-align:center">2</td> |
|
| 581 | -<td style="text-align:center">★ ☆ ☆ ☆ ☆</td> |
|
| 582 | -</tr> |
|
| 583 | -<tr> |
|
| 584 | -<td style="text-align:left"><a href="../PIK3R1">PIK3R1</a></td> |
|
| 585 | -<td style="text-align:center">2</td> |
|
| 586 | -<td style="text-align:center">★ ☆ ☆ ☆ ☆</td> |
|
| 587 | -</tr> |
|
| 588 | -<tr> |
|
| 589 | -<td style="text-align:left"><a href="../PLCG2">PLCG2</a></td> |
|
| 590 | -<td style="text-align:center">2</td> |
|
| 591 | -<td style="text-align:center">☆ ☆ ☆ ☆ ☆</td> |
|
| 592 | -</tr> |
|
| 593 | -<tr> |
|
| 594 | -<td style="text-align:left"><a href="../PXDNL">PXDNL</a></td> |
|
| 595 | -<td style="text-align:center">2</td> |
|
| 596 | -<td style="text-align:center">☆ ☆ ☆ ☆ ☆</td> |
|
| 597 | -</tr> |
|
| 598 | -<tr> |
|
| 599 | -<td style="text-align:left"><a href="../RAC2">RAC2</a></td> |
|
| 600 | -<td style="text-align:center">2</td> |
|
| 601 | -<td style="text-align:center">☆ ☆ ☆ ☆ ☆</td> |
|
| 602 | -</tr> |
|
| 603 | -<tr> |
|
| 604 | -<td style="text-align:left"><a href="../RNF144B">RNF144B</a></td> |
|
| 605 | -<td style="text-align:center">2</td> |
|
| 606 | -<td style="text-align:center">☆ ☆ ☆ ☆ ☆</td> |
|
| 607 | -</tr> |
|
| 608 | -<tr> |
|
| 609 | -<td style="text-align:left"><a href="../SNTB2">SNTB2</a></td> |
|
| 610 | -<td style="text-align:center">2</td> |
|
| 611 | -<td style="text-align:center">☆ ☆ ☆ ☆ ☆</td> |
|
| 612 | -</tr> |
|
| 613 | -<tr> |
|
| 614 | -<td style="text-align:left"><a href="../SP3">SP3</a></td> |
|
| 615 | -<td style="text-align:center">2</td> |
|
| 616 | -<td style="text-align:center">☆ ☆ ☆ ☆ ☆</td> |
|
| 617 | -</tr> |
|
| 618 | -<tr> |
|
| 619 | -<td style="text-align:left"><a href="../SYNCRIP">SYNCRIP</a></td> |
|
| 620 | -<td style="text-align:center">2</td> |
|
| 621 | -<td style="text-align:center">☆ ☆ ☆ ☆ ☆</td> |
|
| 622 | -</tr> |
|
| 623 | -<tr> |
|
| 624 | -<td style="text-align:left"><a href="../TET2">TET2</a></td> |
|
| 625 | -<td style="text-align:center">2</td> |
|
| 626 | -<td style="text-align:center">☆ ☆ ☆ ☆ ☆</td> |
|
| 627 | -</tr> |
|
| 628 | -<tr> |
|
| 629 | -<td style="text-align:left"><a href="../WDR7">WDR7</a></td> |
|
| 630 | -<td style="text-align:center">2</td> |
|
| 631 | -<td style="text-align:center">☆ ☆ ☆ ☆ ☆</td> |
|
| 632 | -</tr> |
|
| 633 | -<tr> |
|
| 634 | -<td style="text-align:left"><a href="../WNK2">WNK2</a></td> |
|
| 635 | -<td style="text-align:center">2</td> |
|
| 636 | -<td style="text-align:center">☆ ☆ ☆ ☆ ☆</td> |
|
| 637 | -</tr> |
|
| 638 | -<tr> |
|
| 639 | -<td style="text-align:left"><a href="../ZFP36L1">ZFP36L1</a></td> |
|
| 640 | -<td style="text-align:center">2</td> |
|
| 641 | -<td style="text-align:center">☆ ☆ ☆ ☆ ☆</td> |
|
| 642 | -</tr> |
|
| 643 | -</tbody> |
|
| 644 | -</table> |
|
| 645 | -<h1 id="details">Details</h1> |
|
| 646 | -
|
|
| 647 | -</body>
|
|
| 648 | -</html>
|
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