071983b856c32b39b756b5e8886b2b29ff3ab5af
papers/zhangGeneticHeterogeneityDiffuse2013.md
| ... | ... | @@ -8,7 +8,7 @@ bibliography: 'morinlab.bib' |
| 8 | 8 | |
| 9 | 9 | |Entity| Tier 1 genes| Tier 2 genes|Tier 3 genes| |
| 10 | 10 | |:-:|:-:|:-:|:-:| |
| 11 | -|DLBCL|14|9|266| |
|
| 11 | +|DLBCL|15|10|275| |
|
| 12 | 12 | ```mermaid |
| 13 | 13 | --- |
| 14 | 14 | config: |
| ... | ... | @@ -22,319 +22,330 @@ config: |
| 22 | 22 | suffix: ' genes)' |
| 23 | 23 | --- |
| 24 | 24 | sankey-beta |
| 25 | -This study, New Tier 1, 14 |
|
| 26 | -New Tier 1, DLBCL Tier 1, 14 |
|
| 27 | -This study, New Tier 2, 9 |
|
| 28 | -New Tier 2, DLBCL Tier 2, 9 |
|
| 29 | -This study, New Tier 3, 266 |
|
| 30 | -New Tier 3, DLBCL Tier 3, 266 |
|
| 31 | -All other DLBCL studies, DLBCL Tier 1, 113 |
|
| 32 | -All other DLBCL studies, DLBCL Tier 2, 163 |
|
| 33 | -All other DLBCL studies, DLBCL Tier 3, 115 |
|
| 25 | +This study, New Tier 1, 15 |
|
| 26 | +New Tier 1, DLBCL Tier 1, 15 |
|
| 27 | +This study, New Tier 2, 10 |
|
| 28 | +New Tier 2, DLBCL Tier 2, 10 |
|
| 29 | +This study, New Tier 3, 275 |
|
| 30 | +New Tier 3, DLBCL Tier 3, 275 |
|
| 31 | +All other DLBCL studies, DLBCL Tier 1, 112 |
|
| 32 | +All other DLBCL studies, DLBCL Tier 2, 166 |
|
| 33 | +All other DLBCL studies, DLBCL Tier 3, 114 |
|
| 34 | 34 | ``` |
| 35 | 35 | |
| 36 | 36 | ## Novel genes reported in this study |
| 37 | 37 | |
| 38 | 38 | ### Tier 1 |
| 39 | -|New gene|DLBCL tier| |
|
| 40 | -|:-|:-:| |
|
| 41 | -|[ARID1A](../ARID1A)|1 | |
|
| 42 | -|[BCL7A](../BCL7A)|1 | |
|
| 43 | -|[DTX1](../DTX1)|1 | |
|
| 44 | -|[FBXW7](../FBXW7)|1 | |
|
| 45 | -|[KLHL14](../KLHL14)|1 | |
|
| 46 | -|[KMT2C](../KMT2C)|1 | |
|
| 47 | -|[MGA](../MGA)|1 | |
|
| 48 | -|[MTOR](../MTOR)|1 | |
|
| 49 | -|[NOTCH2](../NOTCH2)|1 | |
|
| 50 | -|[OSBPL10](../OSBPL10)|1 | |
|
| 51 | -|[RHOA](../RHOA)|1 | |
|
| 52 | -|[TRRAP](../TRRAP)|1 | |
|
| 53 | -|[ZNF292](../ZNF292)|1 | |
|
| 54 | -|[ZNF608](../ZNF608)|1 | |
|
| 39 | +|New gene|DLBCL tier| Average variant quality | QC outcome | |
|
| 40 | +|:-|:-:|:-:|:-:| |
|
| 41 | +|[ARID1A](../ARID1A)|1 || | |
|
| 42 | +|[BCL7A](../BCL7A)|1 || | |
|
| 43 | +|[DTX1](../DTX1)|1 || | |
|
| 44 | +|[FBXW7](../FBXW7)|1 || | |
|
| 45 | +|[HIST1H2BK](../HIST1H2BK)|1 || | |
|
| 46 | +|[KLHL14](../KLHL14)|1 || | |
|
| 47 | +|[KMT2C](../KMT2C)|1 || | |
|
| 48 | +|[MGA](../MGA)|1 || | |
|
| 49 | +|[MTOR](../MTOR)|1 || | |
|
| 50 | +|[NOTCH2](../NOTCH2)|1 || | |
|
| 51 | +|[OSBPL10](../OSBPL10)|1 || | |
|
| 52 | +|[RHOA](../RHOA)|1 || | |
|
| 53 | +|[TRRAP](../TRRAP)|1 || | |
|
| 54 | +|[ZNF292](../ZNF292)|1 || | |
|
| 55 | +|[ZNF608](../ZNF608)|1 || | |
|
| 55 | 56 | |
| 56 | 57 | ### Tier 2 |
| 57 | -|New gene|DLBCL tier| |
|
| 58 | -|:-|:-:| |
|
| 59 | -|[BTBD3](../BTBD3)|2 | |
|
| 60 | -|[INO80](../INO80)|2 | |
|
| 61 | -|[JAK1](../JAK1)|2 | |
|
| 62 | -|[JAK3](../JAK3)|2 | |
|
| 63 | -|[PIK3R1](../PIK3R1)|2 | |
|
| 64 | -|[SETD2](../SETD2)|2 | |
|
| 65 | -|[STAT5B](../STAT5B)|2 | |
|
| 66 | -|[UBR5](../UBR5)|2 | |
|
| 67 | -|[ZEB2](../ZEB2)|2 | |
|
| 58 | +|New gene|DLBCL tier| Average variant quality | QC outcome | |
|
| 59 | +|:-|:-:|:-:|:-:| |
|
| 60 | +|[BTBD3](../BTBD3)|2 |★ ★ ★ ★ ☆ |PASS | |
|
| 61 | +|[INO80](../INO80)|2 || | |
|
| 62 | +|[JAK1](../JAK1)|2 || | |
|
| 63 | +|[JAK3](../JAK3)|2 || | |
|
| 64 | +|[PIK3R1](../PIK3R1)|2 || | |
|
| 65 | +|[SETD2](../SETD2)|2 || | |
|
| 66 | +|[SMEK1](../SMEK1)|2 || | |
|
| 67 | +|[STAT5B](../STAT5B)|2 || | |
|
| 68 | +|[UBR5](../UBR5)|2 || | |
|
| 69 | +|[ZEB2](../ZEB2)|2 || | |
|
| 68 | 70 | |
| 69 | 71 | ### Tier 3 |
| 70 | -|New gene|DLBCL tier| |
|
| 71 | -|:-|:-:| |
|
| 72 | -|[ABCA3](../ABCA3)|3 | |
|
| 73 | -|[ABCA4](../ABCA4)|3 | |
|
| 74 | -|[ACE](../ACE)|3 | |
|
| 75 | -|[ACSM3](../ACSM3)|3 | |
|
| 76 | -|[ACSS2](../ACSS2)|3 | |
|
| 77 | -|[ACSS3](../ACSS3)|3 | |
|
| 78 | -|[ACTN1](../ACTN1)|3 | |
|
| 79 | -|[ADAM2](../ADAM2)|3 | |
|
| 80 | -|[ADAMTS15](../ADAMTS15)|3 | |
|
| 81 | -|[ADH7](../ADH7)|3 | |
|
| 82 | -|[AFAP1L2](../AFAP1L2)|3 | |
|
| 83 | -|[AMAC1](../AMAC1)|3 | |
|
| 84 | -|[AMIGO3](../AMIGO3)|3 | |
|
| 85 | -|[AMPH](../AMPH)|3 | |
|
| 86 | -|[ANK2](../ANK2)|3 | |
|
| 87 | -|[ANKRD17](../ANKRD17)|3 | |
|
| 88 | -|[ANKRD44](../ANKRD44)|3 | |
|
| 89 | -|[ANTXR1](../ANTXR1)|3 | |
|
| 90 | -|[AP1G2](../AP1G2)|3 | |
|
| 91 | -|[APBB1](../APBB1)|3 | |
|
| 92 | -|[APC](../APC)|3 | |
|
| 93 | -|[APOA5](../APOA5)|3 | |
|
| 94 | -|[APP](../APP)|3 | |
|
| 95 | -|[ATIC](../ATIC)|3 | |
|
| 96 | -|[ATP10A](../ATP10A)|3 | |
|
| 97 | -|[ATP1A2](../ATP1A2)|3 | |
|
| 98 | -|[ATP2A3](../ATP2A3)|3 | |
|
| 99 | -|[B4GALNT2](../B4GALNT2)|3 | |
|
| 100 | -|[BAZ1A](../BAZ1A)|3 | |
|
| 101 | -|[BCAT2](../BCAT2)|3 | |
|
| 102 | -|[BLM](../BLM)|3 | |
|
| 103 | -|[BMPR1A](../BMPR1A)|3 | |
|
| 104 | -|[BRCA2](../BRCA2)|3 | |
|
| 105 | -|[BRD4](../BRD4)|3 | |
|
| 106 | -|[BSCL2](../BSCL2)|3 | |
|
| 107 | -|[BTAF1](../BTAF1)|3 | |
|
| 108 | -|[C9](../C9)|3 | |
|
| 109 | -|[CAD](../CAD)|3 | |
|
| 110 | -|[CAPN5](../CAPN5)|3 | |
|
| 111 | -|[CAPN7](../CAPN7)|3 | |
|
| 112 | -|[CCDC132](../CCDC132)|3 | |
|
| 113 | -|[CCDC46](../CCDC46)|3 | |
|
| 114 | -|[CCDC97](../CCDC97)|3 | |
|
| 115 | -|[CCNF](../CCNF)|3 | |
|
| 116 | -|[CDC123](../CDC123)|3 | |
|
| 117 | -|[CDH10](../CDH10)|3 | |
|
| 118 | -|[CDH7](../CDH7)|3 | |
|
| 119 | -|[CDK3](../CDK3)|3 | |
|
| 120 | -|[CECR1](../CECR1)|3 | |
|
| 121 | -|[CELSR2](../CELSR2)|3 | |
|
| 122 | -|[CHD3](../CHD3)|3 | |
|
| 123 | -|[CHRM5](../CHRM5)|3 | |
|
| 124 | -|[CIC](../CIC)|3 | |
|
| 125 | -|[CNGA4](../CNGA4)|3 | |
|
| 126 | -|[CNOT6](../CNOT6)|3 | |
|
| 127 | -|[CNP](../CNP)|3 | |
|
| 128 | -|[CNTN6](../CNTN6)|3 | |
|
| 129 | -|[COL5A2](../COL5A2)|3 | |
|
| 130 | -|[CORO2A](../CORO2A)|3 | |
|
| 131 | -|[CORO7](../CORO7)|3 | |
|
| 132 | -|[CRELD2](../CRELD2)|3 | |
|
| 133 | -|[CRTC3](../CRTC3)|3 | |
|
| 134 | -|[CST7](../CST7)|3 | |
|
| 135 | -|[CTNNA3](../CTNNA3)|3 | |
|
| 136 | -|[CYP24A1](../CYP24A1)|3 | |
|
| 137 | -|[CYP2C18](../CYP2C18)|3 | |
|
| 138 | -|[DDB1](../DDB1)|3 | |
|
| 139 | -|[DDX10](../DDX10)|3 | |
|
| 140 | -|[DIAPH3](../DIAPH3)|3 | |
|
| 141 | -|[DIP2B](../DIP2B)|3 | |
|
| 142 | -|[DLGAP1](../DLGAP1)|3 | |
|
| 143 | -|[DMXL1](../DMXL1)|3 | |
|
| 144 | -|[DOCK2](../DOCK2)|3 | |
|
| 145 | -|[DOLK](../DOLK)|3 | |
|
| 146 | -|[DSC2](../DSC2)|3 | |
|
| 147 | -|[DSCAML1](../DSCAML1)|3 | |
|
| 148 | -|[DSG2](../DSG2)|3 | |
|
| 149 | -|[DSP](../DSP)|3 | |
|
| 150 | -|[DUOXA2](../DUOXA2)|3 | |
|
| 151 | -|[DUPD1](../DUPD1)|3 | |
|
| 152 | -|[DYNC1H1](../DYNC1H1)|3 | |
|
| 153 | -|[DYNC1I1](../DYNC1I1)|3 | |
|
| 154 | -|[ECGF1](../ECGF1)|3 | |
|
| 155 | -|[EPHA3](../EPHA3)|3 | |
|
| 156 | -|[EPHA5](../EPHA5)|3 | |
|
| 157 | -|[EPHA7](../EPHA7)|3 | |
|
| 158 | -|[ERBB3](../ERBB3)|3 | |
|
| 159 | -|[ERN2](../ERN2)|3 | |
|
| 160 | -|[EXTL3](../EXTL3)|3 | |
|
| 161 | -|[FAM62C](../FAM62C)|3 | |
|
| 162 | -|[FANCD2](../FANCD2)|3 | |
|
| 163 | -|[FGD3](../FGD3)|3 | |
|
| 164 | -|[FGFR1](../FGFR1)|3 | |
|
| 165 | -|[FIGN](../FIGN)|3 | |
|
| 166 | -|[FLNC](../FLNC)|3 | |
|
| 167 | -|[FMO2](../FMO2)|3 | |
|
| 168 | -|[FRMPD1](../FRMPD1)|3 | |
|
| 169 | -|[GABRG1](../GABRG1)|3 | |
|
| 170 | -|[GCN1L1](../GCN1L1)|3 | |
|
| 171 | -|[GJA8](../GJA8)|3 | |
|
| 172 | -|[GJB4](../GJB4)|3 | |
|
| 173 | -|[GOPC](../GOPC)|3 | |
|
| 174 | -|[GPD2](../GPD2)|3 | |
|
| 175 | -|[GPR133](../GPR133)|3 | |
|
| 176 | -|[GPR15](../GPR15)|3 | |
|
| 177 | -|[GREM2](../GREM2)|3 | |
|
| 178 | -|[GRIA2](../GRIA2)|3 | |
|
| 179 | -|[GRM5](../GRM5)|3 | |
|
| 180 | -|[H6PD](../H6PD)|3 | |
|
| 181 | -|[HACE1](../HACE1)|3 | |
|
| 182 | -|[HCK](../HCK)|3 | |
|
| 183 | -|[HIPK3](../HIPK3)|3 | |
|
| 184 | -|[HIST1H4I](../HIST1H4I)|3 | |
|
| 185 | -|[HK3](../HK3)|3 | |
|
| 186 | -|[HNRNPR](../HNRNPR)|3 | |
|
| 187 | -|[HSF2](../HSF2)|3 | |
|
| 188 | -|[IDH1](../IDH1)|3 | |
|
| 189 | -|[INSC](../INSC)|3 | |
|
| 190 | -|[INTS6](../INTS6)|3 | |
|
| 191 | -|[IQGAP1](../IQGAP1)|3 | |
|
| 192 | -|[IQUB](../IQUB)|3 | |
|
| 193 | -|[ITGA2](../ITGA2)|3 | |
|
| 194 | -|[ITGA8](../ITGA8)|3 | |
|
| 195 | -|[ITGB3](../ITGB3)|3 | |
|
| 196 | -|[JAG1](../JAG1)|3 | |
|
| 197 | -|[JAKMIP2](../JAKMIP2)|3 | |
|
| 198 | -|[KCNA3](../KCNA3)|3 | |
|
| 199 | -|[KCNAB3](../KCNAB3)|3 | |
|
| 200 | -|[KCNJ6](../KCNJ6)|3 | |
|
| 201 | -|[KCNT2](../KCNT2)|3 | |
|
| 202 | -|[KDR](../KDR)|3 | |
|
| 203 | -|[KIF21B](../KIF21B)|3 | |
|
| 204 | -|[KIT](../KIT)|3 | |
|
| 205 | -|[KLB](../KLB)|3 | |
|
| 206 | -|[KLC3](../KLC3)|3 | |
|
| 207 | -|[KLF4](../KLF4)|3 | |
|
| 208 | -|[KRT6A](../KRT6A)|3 | |
|
| 209 | -|[LEPREL1](../LEPREL1)|3 | |
|
| 210 | -|[LIFR](../LIFR)|3 | |
|
| 211 | -|[LILRA2](../LILRA2)|3 | |
|
| 212 | -|[LIN7C](../LIN7C)|3 | |
|
| 213 | -|[LPHN2](../LPHN2)|3 | |
|
| 214 | -|[LRAP](../LRAP)|3 | |
|
| 215 | -|[LRIG3](../LRIG3)|3 | |
|
| 216 | -|[LRP1](../LRP1)|3 | |
|
| 217 | -|[LRP10](../LRP10)|3 | |
|
| 218 | -|[LRP1B](../LRP1B)|3 | |
|
| 219 | -|[LRP3](../LRP3)|3 | |
|
| 220 | -|[LRRN3](../LRRN3)|3 | |
|
| 221 | -|[LYST](../LYST)|3 | |
|
| 222 | -|[MARCHF7](../MARCHF7)|3 | |
|
| 223 | -|[MBL2](../MBL2)|3 | |
|
| 224 | -|[MED13L](../MED13L)|3 | |
|
| 225 | -|[MIB1](../MIB1)|3 | |
|
| 226 | -|[MN1](../MN1)|3 | |
|
| 227 | -|[MORC2](../MORC2)|3 | |
|
| 228 | -|[MPL](../MPL)|3 | |
|
| 229 | -|[MTMR3](../MTMR3)|3 | |
|
| 230 | -|[MYL7](../MYL7)|3 | |
|
| 231 | -|[MYO5C](../MYO5C)|3 | |
|
| 232 | -|[MYRIP](../MYRIP)|3 | |
|
| 233 | -|[NDUFS1](../NDUFS1)|3 | |
|
| 234 | -|[NELL2](../NELL2)|3 | |
|
| 235 | -|[NFIB](../NFIB)|3 | |
|
| 236 | -|[NFX1](../NFX1)|3 | |
|
| 237 | -|[NGFR](../NGFR)|3 | |
|
| 238 | -|[NIPBL](../NIPBL)|3 | |
|
| 239 | -|[NLGN2](../NLGN2)|3 | |
|
| 240 | -|[NLRP7](../NLRP7)|3 | |
|
| 241 | -|[NPHP1](../NPHP1)|3 | |
|
| 242 | -|[NPY2R](../NPY2R)|3 | |
|
| 243 | -|[NRXN2](../NRXN2)|3 | |
|
| 244 | -|[NSD1](../NSD1)|3 | |
|
| 245 | -|[ONECUT1](../ONECUT1)|3 | |
|
| 246 | -|[PADI1](../PADI1)|3 | |
|
| 247 | -|[PAPPA2](../PAPPA2)|3 | |
|
| 248 | -|[PBX1](../PBX1)|3 | |
|
| 249 | -|[PCCB](../PCCB)|3 | |
|
| 250 | -|[PCDE1C](../PCDE1C)|3 | |
|
| 251 | -|[PCDH7](../PCDH7)|3 | |
|
| 252 | -|[PCDHB1](../PCDHB1)|3 | |
|
| 253 | -|[PCDHB15](../PCDHB15)|3 | |
|
| 254 | -|[PCDHB3](../PCDHB3)|3 | |
|
| 255 | -|[PCDHB5](../PCDHB5)|3 | |
|
| 256 | -|[PCDHGA2](../PCDHGA2)|3 | |
|
| 257 | -|[PDGFRA](../PDGFRA)|3 | |
|
| 258 | -|[PDIA2](../PDIA2)|3 | |
|
| 259 | -|[PDZRN3](../PDZRN3)|3 | |
|
| 260 | -|[PDZRN4](../PDZRN4)|3 | |
|
| 261 | -|[PIK3CD](../PIK3CD)|3 | |
|
| 262 | -|[PLA2G4B](../PLA2G4B)|3 | |
|
| 263 | -|[PLEKHA7](../PLEKHA7)|3 | |
|
| 264 | -|[PNLIPRP1](../PNLIPRP1)|3 | |
|
| 265 | -|[PNPT1](../PNPT1)|3 | |
|
| 266 | -|[POLE](../POLE)|3 | |
|
| 267 | -|[PPARGC1A](../PPARGC1A)|3 | |
|
| 268 | -|[PPWD1](../PPWD1)|3 | |
|
| 269 | -|[PRDM16](../PRDM16)|3 | |
|
| 270 | -|[PRKCB1](../PRKCB1)|3 | |
|
| 271 | -|[PRKCQ](../PRKCQ)|3 | |
|
| 272 | -|[PROS1](../PROS1)|3 | |
|
| 273 | -|[PRSS7](../PRSS7)|3 | |
|
| 274 | -|[PTPN14](../PTPN14)|3 | |
|
| 275 | -|[PTPRF](../PTPRF)|3 | |
|
| 276 | -|[PTPRT](../PTPRT)|3 | |
|
| 277 | -|[PXK](../PXK)|3 | |
|
| 278 | -|[RAB3GAP1](../RAB3GAP1)|3 | |
|
| 279 | -|[RAPGEF2](../RAPGEF2)|3 | |
|
| 280 | -|[RBM15B](../RBM15B)|3 | |
|
| 281 | -|[RELN](../RELN)|3 | |
|
| 282 | -|[RFC1](../RFC1)|3 | |
|
| 283 | -|[ROR2](../ROR2)|3 | |
|
| 284 | -|[RSL1D1](../RSL1D1)|3 | |
|
| 285 | -|[RUNDC1](../RUNDC1)|3 | |
|
| 286 | -|[RYR1](../RYR1)|3 | |
|
| 287 | -|[SAPS3](../SAPS3)|3 | |
|
| 288 | -|[SCYL1](../SCYL1)|3 | |
|
| 289 | -|[SEMA3A](../SEMA3A)|3 | |
|
| 290 | -|[SEMA5A](../SEMA5A)|3 | |
|
| 291 | -|[SERINC2](../SERINC2)|3 | |
|
| 292 | -|[SH3PXD2B](../SH3PXD2B)|3 | |
|
| 293 | -|[SHMT2](../SHMT2)|3 | |
|
| 294 | -|[SIGLEC10](../SIGLEC10)|3 | |
|
| 295 | -|[SLC16A7](../SLC16A7)|3 | |
|
| 296 | -|[SLC4A8](../SLC4A8)|3 | |
|
| 297 | -|[SLC5A1](../SLC5A1)|3 | |
|
| 298 | -|[SLC9A5](../SLC9A5)|3 | |
|
| 299 | -|[SMEK1](../SMEK1)|3 | |
|
| 300 | -|[SOX6](../SOX6)|3 | |
|
| 301 | -|[SPEG](../SPEG)|3 | |
|
| 302 | -|[SPTBN1](../SPTBN1)|3 | |
|
| 303 | -|[ST8SIA3](../ST8SIA3)|3 | |
|
| 304 | -|[SULF2](../SULF2)|3 | |
|
| 305 | -|[TAF1L](../TAF1L)|3 | |
|
| 306 | -|[TAF4B](../TAF4B)|3 | |
|
| 307 | -|[THBS4](../THBS4)|3 | |
|
| 308 | -|[TIMM50](../TIMM50)|3 | |
|
| 309 | -|[TLN2](../TLN2)|3 | |
|
| 310 | -|[TMC1](../TMC1)|3 | |
|
| 311 | -|[TMEM161A](../TMEM161A)|3 | |
|
| 312 | -|[TMEM16E](../TMEM16E)|3 | |
|
| 313 | -|[TMEM63A](../TMEM63A)|3 | |
|
| 314 | -|[TPRKB](../TPRKB)|3 | |
|
| 315 | -|[TRIM37](../TRIM37)|3 | |
|
| 316 | -|[TRIP11](../TRIP11)|3 | |
|
| 317 | -|[TSC2](../TSC2)|3 | |
|
| 318 | -|[TSHZ2](../TSHZ2)|3 | |
|
| 319 | -|[UHRF1BP1L](../UHRF1BP1L)|3 | |
|
| 320 | -|[UNC13B](../UNC13B)|3 | |
|
| 321 | -|[UQCRC1](../UQCRC1)|3 | |
|
| 322 | -|[VPS13A](../VPS13A)|3 | |
|
| 323 | -|[WDR65](../WDR65)|3 | |
|
| 324 | -|[WDR66](../WDR66)|3 | |
|
| 325 | -|[WDR67](../WDR67)|3 | |
|
| 326 | -|[WIF1](../WIF1)|3 | |
|
| 327 | -|[WNK4](../WNK4)|3 | |
|
| 328 | -|[WT1](../WT1)|3 | |
|
| 329 | -|[XDH](../XDH)|3 | |
|
| 330 | -|[ZIC4](../ZIC4)|3 | |
|
| 331 | -|[ZNF366](../ZNF366)|3 | |
|
| 332 | -|[ZNF439](../ZNF439)|3 | |
|
| 333 | -|[ZNF474](../ZNF474)|3 | |
|
| 334 | -|[ZNF700](../ZNF700)|3 | |
|
| 335 | -|[ZNF790](../ZNF790)|3 | |
|
| 336 | -|[ZNF91](../ZNF91)|3 | |
|
| 337 | -|[ZP1](../ZP1)|3 | |
|
| 72 | +|New gene|DLBCL tier| Average variant quality | QC outcome | |
|
| 73 | +|:-|:-:|:-:|:-:| |
|
| 74 | +|[ABCA3](../ABCA3)|3 || | |
|
| 75 | +|[ABCA4](../ABCA4)|3 || | |
|
| 76 | +|[ACE](../ACE)|3 || | |
|
| 77 | +|[ACSM3](../ACSM3)|3 || | |
|
| 78 | +|[ACSS2](../ACSS2)|3 || | |
|
| 79 | +|[ACSS3](../ACSS3)|3 || | |
|
| 80 | +|[ACTN1](../ACTN1)|3 || | |
|
| 81 | +|[ADAM2](../ADAM2)|3 || | |
|
| 82 | +|[ADAMTS15](../ADAMTS15)|3 || | |
|
| 83 | +|[ADH7](../ADH7)|3 || | |
|
| 84 | +|[AFAP1L2](../AFAP1L2)|3 || | |
|
| 85 | +|[AHR](../AHR)|3 || | |
|
| 86 | +|[AKAP9](../AKAP9)|3 || | |
|
| 87 | +|[ALAS1](../ALAS1)|3 || | |
|
| 88 | +|[ALDH1L2](../ALDH1L2)|3 || | |
|
| 89 | +|[AMAC1](../AMAC1)|3 || | |
|
| 90 | +|[AMIGO3](../AMIGO3)|3 || | |
|
| 91 | +|[AMPH](../AMPH)|3 || | |
|
| 92 | +|[ANK2](../ANK2)|3 || | |
|
| 93 | +|[ANKRD17](../ANKRD17)|3 |★ ★ ★ ☆ ☆ |FAIL | |
|
| 94 | +|[ANKRD44](../ANKRD44)|3 || | |
|
| 95 | +|[ANTXR1](../ANTXR1)|3 || | |
|
| 96 | +|[AP1G2](../AP1G2)|3 || | |
|
| 97 | +|[APBB1](../APBB1)|3 || | |
|
| 98 | +|[APC](../APC)|3 || | |
|
| 99 | +|[APOA5](../APOA5)|3 || | |
|
| 100 | +|[APP](../APP)|3 || | |
|
| 101 | +|[ATIC](../ATIC)|3 || | |
|
| 102 | +|[ATP10A](../ATP10A)|3 || | |
|
| 103 | +|[ATP1A2](../ATP1A2)|3 || | |
|
| 104 | +|[ATP2A3](../ATP2A3)|3 || | |
|
| 105 | +|[B4GALNT2](../B4GALNT2)|3 || | |
|
| 106 | +|[BAZ1A](../BAZ1A)|3 || | |
|
| 107 | +|[BCAT2](../BCAT2)|3 || | |
|
| 108 | +|[BLM](../BLM)|3 || | |
|
| 109 | +|[BMPR1A](../BMPR1A)|3 || | |
|
| 110 | +|[BRCA2](../BRCA2)|3 || | |
|
| 111 | +|[BRD4](../BRD4)|3 || | |
|
| 112 | +|[BSCL2](../BSCL2)|3 || | |
|
| 113 | +|[BTAF1](../BTAF1)|3 || | |
|
| 114 | +|[C9](../C9)|3 || | |
|
| 115 | +|[CAD](../CAD)|3 || | |
|
| 116 | +|[CAPN5](../CAPN5)|3 || | |
|
| 117 | +|[CAPN7](../CAPN7)|3 || | |
|
| 118 | +|[CCDC132](../CCDC132)|3 || | |
|
| 119 | +|[CCDC46](../CCDC46)|3 || | |
|
| 120 | +|[CCDC97](../CCDC97)|3 || | |
|
| 121 | +|[CCNF](../CCNF)|3 || | |
|
| 122 | +|[CDC123](../CDC123)|3 || | |
|
| 123 | +|[CDH10](../CDH10)|3 || | |
|
| 124 | +|[CDH7](../CDH7)|3 || | |
|
| 125 | +|[CDK3](../CDK3)|3 || | |
|
| 126 | +|[CECR1](../CECR1)|3 || | |
|
| 127 | +|[CELSR2](../CELSR2)|3 || | |
|
| 128 | +|[CHD3](../CHD3)|3 || | |
|
| 129 | +|[CHRM5](../CHRM5)|3 || | |
|
| 130 | +|[CIC](../CIC)|3 || | |
|
| 131 | +|[CNGA4](../CNGA4)|3 || | |
|
| 132 | +|[CNOT6](../CNOT6)|3 || | |
|
| 133 | +|[CNP](../CNP)|3 || | |
|
| 134 | +|[CNTN6](../CNTN6)|3 || | |
|
| 135 | +|[COL5A2](../COL5A2)|3 || | |
|
| 136 | +|[CORO2A](../CORO2A)|3 || | |
|
| 137 | +|[CORO7](../CORO7)|3 || | |
|
| 138 | +|[CRELD2](../CRELD2)|3 || | |
|
| 139 | +|[CRTC3](../CRTC3)|3 || | |
|
| 140 | +|[CST7](../CST7)|3 || | |
|
| 141 | +|[CTNNA3](../CTNNA3)|3 || | |
|
| 142 | +|[CYP24A1](../CYP24A1)|3 || | |
|
| 143 | +|[CYP2C18](../CYP2C18)|3 || | |
|
| 144 | +|[DDB1](../DDB1)|3 || | |
|
| 145 | +|[DDX10](../DDX10)|3 |★ ★ ☆ ☆ ☆ |FAIL | |
|
| 146 | +|[DIAPH3](../DIAPH3)|3 || | |
|
| 147 | +|[DIP2B](../DIP2B)|3 || | |
|
| 148 | +|[DLGAP1](../DLGAP1)|3 || | |
|
| 149 | +|[DMXL1](../DMXL1)|3 || | |
|
| 150 | +|[DOCK2](../DOCK2)|3 || | |
|
| 151 | +|[DOLK](../DOLK)|3 || | |
|
| 152 | +|[DSC2](../DSC2)|3 || | |
|
| 153 | +|[DSCAML1](../DSCAML1)|3 || | |
|
| 154 | +|[DSG2](../DSG2)|3 || | |
|
| 155 | +|[DSP](../DSP)|3 || | |
|
| 156 | +|[DUOXA2](../DUOXA2)|3 || | |
|
| 157 | +|[DUPD1](../DUPD1)|3 || | |
|
| 158 | +|[DYNC1H1](../DYNC1H1)|3 || | |
|
| 159 | +|[DYNC1I1](../DYNC1I1)|3 || | |
|
| 160 | +|[ECGF1](../ECGF1)|3 || | |
|
| 161 | +|[EPHA3](../EPHA3)|3 || | |
|
| 162 | +|[EPHA5](../EPHA5)|3 || | |
|
| 163 | +|[EPHA7](../EPHA7)|3 || | |
|
| 164 | +|[ERBB3](../ERBB3)|3 || | |
|
| 165 | +|[ERN2](../ERN2)|3 || | |
|
| 166 | +|[ETNPPL](../ETNPPL)|3 || | |
|
| 167 | +|[EXTL3](../EXTL3)|3 || | |
|
| 168 | +|[FAM62C](../FAM62C)|3 || | |
|
| 169 | +|[FANCD2](../FANCD2)|3 || | |
|
| 170 | +|[FGD3](../FGD3)|3 || | |
|
| 171 | +|[FGFR1](../FGFR1)|3 || | |
|
| 172 | +|[FIGN](../FIGN)|3 || | |
|
| 173 | +|[FLNC](../FLNC)|3 || | |
|
| 174 | +|[FMO2](../FMO2)|3 || | |
|
| 175 | +|[FRMPD1](../FRMPD1)|3 || | |
|
| 176 | +|[GABRG1](../GABRG1)|3 || | |
|
| 177 | +|[GCN1L1](../GCN1L1)|3 || | |
|
| 178 | +|[GJA8](../GJA8)|3 || | |
|
| 179 | +|[GJB4](../GJB4)|3 || | |
|
| 180 | +|[GOPC](../GOPC)|3 || | |
|
| 181 | +|[GPD2](../GPD2)|3 || | |
|
| 182 | +|[GPR133](../GPR133)|3 || | |
|
| 183 | +|[GPR15](../GPR15)|3 || | |
|
| 184 | +|[GREM2](../GREM2)|3 || | |
|
| 185 | +|[GRIA2](../GRIA2)|3 || | |
|
| 186 | +|[GRM5](../GRM5)|3 || | |
|
| 187 | +|[H6PD](../H6PD)|3 || | |
|
| 188 | +|[HACE1](../HACE1)|3 || | |
|
| 189 | +|[HCK](../HCK)|3 || | |
|
| 190 | +|[HIPK3](../HIPK3)|3 || | |
|
| 191 | +|[HIST1H4I](../HIST1H4I)|3 || | |
|
| 192 | +|[HK3](../HK3)|3 || | |
|
| 193 | +|[HNRNPR](../HNRNPR)|3 || | |
|
| 194 | +|[HSF2](../HSF2)|3 || | |
|
| 195 | +|[IDH1](../IDH1)|3 || | |
|
| 196 | +|[INSC](../INSC)|3 || | |
|
| 197 | +|[INTS6](../INTS6)|3 || | |
|
| 198 | +|[IQGAP1](../IQGAP1)|3 || | |
|
| 199 | +|[IQUB](../IQUB)|3 || | |
|
| 200 | +|[ITGA2](../ITGA2)|3 || | |
|
| 201 | +|[ITGA8](../ITGA8)|3 || | |
|
| 202 | +|[ITGB3](../ITGB3)|3 || | |
|
| 203 | +|[JAG1](../JAG1)|3 || | |
|
| 204 | +|[JAKMIP2](../JAKMIP2)|3 || | |
|
| 205 | +|[KCNA3](../KCNA3)|3 || | |
|
| 206 | +|[KCNAB3](../KCNAB3)|3 || | |
|
| 207 | +|[KCNJ6](../KCNJ6)|3 || | |
|
| 208 | +|[KCNT2](../KCNT2)|3 || | |
|
| 209 | +|[KDR](../KDR)|3 || | |
|
| 210 | +|[KIF21B](../KIF21B)|3 || | |
|
| 211 | +|[KIT](../KIT)|3 || | |
|
| 212 | +|[KLB](../KLB)|3 || | |
|
| 213 | +|[KLC3](../KLC3)|3 || | |
|
| 214 | +|[KLF4](../KLF4)|3 || | |
|
| 215 | +|[KRT6A](../KRT6A)|3 || | |
|
| 216 | +|[LEPREL1](../LEPREL1)|3 || | |
|
| 217 | +|[LIFR](../LIFR)|3 || | |
|
| 218 | +|[LILRA2](../LILRA2)|3 || | |
|
| 219 | +|[LIN7C](../LIN7C)|3 || | |
|
| 220 | +|[LPHN2](../LPHN2)|3 || | |
|
| 221 | +|[LRAP](../LRAP)|3 || | |
|
| 222 | +|[LRIG3](../LRIG3)|3 || | |
|
| 223 | +|[LRP1](../LRP1)|3 || | |
|
| 224 | +|[LRP10](../LRP10)|3 || | |
|
| 225 | +|[LRP1B](../LRP1B)|3 || | |
|
| 226 | +|[LRP3](../LRP3)|3 || | |
|
| 227 | +|[LRRN3](../LRRN3)|3 |★ ★ ★ ★ ★ |PASS | |
|
| 228 | +|[LYST](../LYST)|3 || | |
|
| 229 | +|[MARCHF7](../MARCHF7)|3 || | |
|
| 230 | +|[MBL2](../MBL2)|3 || | |
|
| 231 | +|[MED13L](../MED13L)|3 || | |
|
| 232 | +|[MIB1](../MIB1)|3 || | |
|
| 233 | +|[MN1](../MN1)|3 || | |
|
| 234 | +|[MORC2](../MORC2)|3 || | |
|
| 235 | +|[MPL](../MPL)|3 || | |
|
| 236 | +|[MTMR3](../MTMR3)|3 || | |
|
| 237 | +|[MYL7](../MYL7)|3 || | |
|
| 238 | +|[MYO5C](../MYO5C)|3 || | |
|
| 239 | +|[MYRIP](../MYRIP)|3 || | |
|
| 240 | +|[NDUFS1](../NDUFS1)|3 || | |
|
| 241 | +|[NELL2](../NELL2)|3 || | |
|
| 242 | +|[NFIB](../NFIB)|3 || | |
|
| 243 | +|[NFX1](../NFX1)|3 || | |
|
| 244 | +|[NGFR](../NGFR)|3 || | |
|
| 245 | +|[NIPBL](../NIPBL)|3 || | |
|
| 246 | +|[NLGN2](../NLGN2)|3 || | |
|
| 247 | +|[NLRP7](../NLRP7)|3 || | |
|
| 248 | +|[NPHP1](../NPHP1)|3 || | |
|
| 249 | +|[NPY2R](../NPY2R)|3 || | |
|
| 250 | +|[NRXN2](../NRXN2)|3 || | |
|
| 251 | +|[NSD1](../NSD1)|3 || | |
|
| 252 | +|[NSD2](../NSD2)|3 || | |
|
| 253 | +|[ONECUT1](../ONECUT1)|3 || | |
|
| 254 | +|[PADI1](../PADI1)|3 || | |
|
| 255 | +|[PAPPA2](../PAPPA2)|3 || | |
|
| 256 | +|[PBX1](../PBX1)|3 || | |
|
| 257 | +|[PCCB](../PCCB)|3 || | |
|
| 258 | +|[PCDE1C](../PCDE1C)|3 || | |
|
| 259 | +|[PCDH7](../PCDH7)|3 || | |
|
| 260 | +|[PCDHB1](../PCDHB1)|3 || | |
|
| 261 | +|[PCDHB15](../PCDHB15)|3 || | |
|
| 262 | +|[PCDHB3](../PCDHB3)|3 || | |
|
| 263 | +|[PCDHB5](../PCDHB5)|3 || | |
|
| 264 | +|[PCDHGA2](../PCDHGA2)|3 || | |
|
| 265 | +|[PDE1C](../PDE1C)|3 || | |
|
| 266 | +|[PDGFRA](../PDGFRA)|3 || | |
|
| 267 | +|[PDIA2](../PDIA2)|3 || | |
|
| 268 | +|[PDZRN3](../PDZRN3)|3 || | |
|
| 269 | +|[PDZRN4](../PDZRN4)|3 || | |
|
| 270 | +|[PIK3CD](../PIK3CD)|3 |★ ★ ☆ ☆ ☆ |FAIL | |
|
| 271 | +|[PLA2G4B](../PLA2G4B)|3 || | |
|
| 272 | +|[PLEKHA7](../PLEKHA7)|3 || | |
|
| 273 | +|[PNLIPRP1](../PNLIPRP1)|3 || | |
|
| 274 | +|[PNPT1](../PNPT1)|3 || | |
|
| 275 | +|[POLE](../POLE)|3 || | |
|
| 276 | +|[PPARGC1A](../PPARGC1A)|3 || | |
|
| 277 | +|[PPWD1](../PPWD1)|3 || | |
|
| 278 | +|[PRDM16](../PRDM16)|3 || | |
|
| 279 | +|[PRKCB1](../PRKCB1)|3 || | |
|
| 280 | +|[PRKCQ](../PRKCQ)|3 || | |
|
| 281 | +|[PROS1](../PROS1)|3 || | |
|
| 282 | +|[PRSS7](../PRSS7)|3 || | |
|
| 283 | +|[PTPN14](../PTPN14)|3 || | |
|
| 284 | +|[PTPRF](../PTPRF)|3 || | |
|
| 285 | +|[PTPRT](../PTPRT)|3 || | |
|
| 286 | +|[PXK](../PXK)|3 || | |
|
| 287 | +|[RAB3GAP1](../RAB3GAP1)|3 || | |
|
| 288 | +|[RAPGEF2](../RAPGEF2)|3 || | |
|
| 289 | +|[RBM15B](../RBM15B)|3 || | |
|
| 290 | +|[RELN](../RELN)|3 || | |
|
| 291 | +|[RFC1](../RFC1)|3 || | |
|
| 292 | +|[RGS1](../RGS1)|3 || | |
|
| 293 | +|[ROR2](../ROR2)|3 || | |
|
| 294 | +|[RSL1D1](../RSL1D1)|3 || | |
|
| 295 | +|[RUNDC1](../RUNDC1)|3 || | |
|
| 296 | +|[RYR1](../RYR1)|3 || | |
|
| 297 | +|[SAPS3](../SAPS3)|3 || | |
|
| 298 | +|[SCYL1](../SCYL1)|3 || | |
|
| 299 | +|[SEMA3A](../SEMA3A)|3 || | |
|
| 300 | +|[SEMA3D](../SEMA3D)|3 || | |
|
| 301 | +|[SEMA5A](../SEMA5A)|3 || | |
|
| 302 | +|[SERINC2](../SERINC2)|3 || | |
|
| 303 | +|[SH3PXD2B](../SH3PXD2B)|3 || | |
|
| 304 | +|[SHMT2](../SHMT2)|3 || | |
|
| 305 | +|[SIGLEC10](../SIGLEC10)|3 || | |
|
| 306 | +|[SLC16A7](../SLC16A7)|3 || | |
|
| 307 | +|[SLC4A8](../SLC4A8)|3 || | |
|
| 308 | +|[SLC5A1](../SLC5A1)|3 || | |
|
| 309 | +|[SLC9A5](../SLC9A5)|3 || | |
|
| 310 | +|[SOX6](../SOX6)|3 || | |
|
| 311 | +|[SPEG](../SPEG)|3 || | |
|
| 312 | +|[SPTBN1](../SPTBN1)|3 || | |
|
| 313 | +|[ST8SIA3](../ST8SIA3)|3 || | |
|
| 314 | +|[SULF2](../SULF2)|3 || | |
|
| 315 | +|[TAF1L](../TAF1L)|3 || | |
|
| 316 | +|[TAF4B](../TAF4B)|3 || | |
|
| 317 | +|[THBS4](../THBS4)|3 || | |
|
| 318 | +|[TIMM50](../TIMM50)|3 || | |
|
| 319 | +|[TLN2](../TLN2)|3 || | |
|
| 320 | +|[TMC1](../TMC1)|3 || | |
|
| 321 | +|[TMEM161A](../TMEM161A)|3 || | |
|
| 322 | +|[TMEM16E](../TMEM16E)|3 || | |
|
| 323 | +|[TMEM63A](../TMEM63A)|3 || | |
|
| 324 | +|[TPRKB](../TPRKB)|3 || | |
|
| 325 | +|[TRIM37](../TRIM37)|3 || | |
|
| 326 | +|[TRIP11](../TRIP11)|3 || | |
|
| 327 | +|[TSC2](../TSC2)|3 || | |
|
| 328 | +|[TSHZ2](../TSHZ2)|3 || | |
|
| 329 | +|[UHRF1BP1L](../UHRF1BP1L)|3 || | |
|
| 330 | +|[UNC13B](../UNC13B)|3 || | |
|
| 331 | +|[UQCRC1](../UQCRC1)|3 || | |
|
| 332 | +|[VPS13A](../VPS13A)|3 || | |
|
| 333 | +|[WDR65](../WDR65)|3 || | |
|
| 334 | +|[WDR66](../WDR66)|3 || | |
|
| 335 | +|[WDR67](../WDR67)|3 || | |
|
| 336 | +|[WIF1](../WIF1)|3 || | |
|
| 337 | +|[WNK4](../WNK4)|3 || | |
|
| 338 | +|[WT1](../WT1)|3 || | |
|
| 339 | +|[XDH](../XDH)|3 || | |
|
| 340 | +|[ZIC4](../ZIC4)|3 || | |
|
| 341 | +|[ZNF354A](../ZNF354A)|3 || | |
|
| 342 | +|[ZNF366](../ZNF366)|3 || | |
|
| 343 | +|[ZNF439](../ZNF439)|3 || | |
|
| 344 | +|[ZNF474](../ZNF474)|3 || | |
|
| 345 | +|[ZNF700](../ZNF700)|3 || | |
|
| 346 | +|[ZNF790](../ZNF790)|3 || | |
|
| 347 | +|[ZNF91](../ZNF91)|3 || | |
|
| 348 | +|[ZP1](../ZP1)|3 || | |
|
| 338 | 349 | |
| 339 | 350 | |
| 340 | 351 | # Details |