BIRC6.md
... ...
@@ -16,6 +16,7 @@ timeline
16 16
title Publication timing
17 17
2017-10-10 : Reddy : DLBCL
18 18
2021-04-01 : Sarkozy : PMBL
19
+ 2018-10-01 : Arthur : DLBCL
19 20
```
20 21
21 22
## Relevance tier by entity
... ...
@@ -23,7 +24,7 @@ timeline
23 24
|Entity|Tier|Description |
24 25
|:------:|:----:|--------------------------------------|
25 26
|![PMBL](images/icons/PMBL_tier1.png)|1|high-confidence PMBL/cHL/GZL gene [@sarkozyMutationalLandscapeGray2021a]|
26
-|![DLBCL](images/icons/DLBCL_tier1.png) |1 |high-confidence DLBCL gene [@reddyGeneticFunctionalDrivers2017]|
27
+|![DLBCL](images/icons/DLBCL_tier1.png) |1 |high-confidence DLBCL gene [@reddyGeneticFunctionalDrivers2017; @arthurGenomewideDiscoverySomatic2018]|
27 28
|![FL](images/icons/FL_tier1.png) |1 |high-confidence FL gene |
28 29
29 30
## Mutation incidence in large patient cohorts (GAMBL reanalysis)
papers/reddyGeneticFunctionalDrivers2017.md
... ...
@@ -8,7 +8,7 @@ bibliography: 'morinlab.bib'
8 8
9 9
|Entity| Tier 1 genes| Tier 2 genes|Tier 3 genes|
10 10
|:-:|:-:|:-:|:-:|
11
-|DLBCL|9|24|26|
11
+|DLBCL|10|24|26|
12 12
```mermaid
13 13
---
14 14
config:
... ...
@@ -22,13 +22,13 @@ config:
22 22
suffix: ' genes)'
23 23
---
24 24
sankey-beta
25
-This study, New Tier 1, 9
26
-New Tier 1, DLBCL Tier 1, 9
25
+This study, New Tier 1, 10
26
+New Tier 1, DLBCL Tier 1, 10
27 27
This study, New Tier 2, 24
28 28
New Tier 2, DLBCL Tier 2, 24
29 29
This study, New Tier 3, 26
30 30
New Tier 3, DLBCL Tier 3, 26
31
-All other DLBCL studies, DLBCL Tier 1, 120
31
+All other DLBCL studies, DLBCL Tier 1, 119
32 32
All other DLBCL studies, DLBCL Tier 2, 154
33 33
All other DLBCL studies, DLBCL Tier 3, 359
34 34
```
... ...
@@ -47,6 +47,7 @@ All other DLBCL studies, DLBCL Tier 3, 359
47 47
|[PTEN](../PTEN)|1 || |
48 48
|[SF3B1](../SF3B1)|1 || |
49 49
|[TOX](../TOX)|1 || |
50
+|[ZNF292](../ZNF292)|1 || |
50 51
51 52
### Tier 2
52 53
|New gene|DLBCL tier| Average variant quality | QC outcome |
papers/zhangGeneticHeterogeneityDiffuse2013.md
... ...
@@ -8,7 +8,7 @@ bibliography: 'morinlab.bib'
8 8
9 9
|Entity| Tier 1 genes| Tier 2 genes|Tier 3 genes|
10 10
|:-:|:-:|:-:|:-:|
11
-|DLBCL|14|14|271|
11
+|DLBCL|13|14|271|
12 12
```mermaid
13 13
---
14 14
config:
... ...
@@ -22,13 +22,13 @@ config:
22 22
suffix: ' genes)'
23 23
---
24 24
sankey-beta
25
-This study, New Tier 1, 14
26
-New Tier 1, DLBCL Tier 1, 14
25
+This study, New Tier 1, 13
26
+New Tier 1, DLBCL Tier 1, 13
27 27
This study, New Tier 2, 14
28 28
New Tier 2, DLBCL Tier 2, 14
29 29
This study, New Tier 3, 271
30 30
New Tier 3, DLBCL Tier 3, 271
31
-All other DLBCL studies, DLBCL Tier 1, 115
31
+All other DLBCL studies, DLBCL Tier 1, 116
32 32
All other DLBCL studies, DLBCL Tier 2, 164
33 33
All other DLBCL studies, DLBCL Tier 3, 114
34 34
```
... ...
@@ -50,7 +50,6 @@ All other DLBCL studies, DLBCL Tier 3, 114
50 50
|[OSBPL10](../OSBPL10)|1 |
51 51
|[RHOA](../RHOA)|1 |
52 52
|[TRRAP](../TRRAP)|1 |
53
-|[ZNF292](../ZNF292)|1 |
54 53
|[ZNF608](../ZNF608)|1 |
55 54
56 55
### Tier 2