Changes in 1f6dc06: update

				DLBCL_genes.md
			
          @@ -17,7 +17,7 @@ link-citations: true

           |:-:|:-:|:-:|:-|:-|

           |[ACTB](ACTB)|Tier 1 GE[@lohrDiscoveryPrioritizationSomatic2012a]|[Lohr et al](papers/lohrDiscoveryPrioritizationSomatic2012a)|[@wienandGenomicAnalysesFlowsorted2019b]||

           |[ACTG1](ACTG1)|Tier 1 GE[@hubschmannMutationalMechanismsShaping2021b]|[Hubschmann et al](papers/hubschmannMutationalMechanismsShaping2021b)|[@deschGenotypingCirculatingTumor2020; @spinaGeneticsNodalMarginal2016b]||

          -|[ARID1A](ARID1A)|Tier 1 GE[@zhangGeneticHeterogeneityDiffuse2013]|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)|[@krysiakRecurrentSomaticMutations2017b; @loveGeneticLandscapeMutations2012; @rossiCodingGenomeSplenic2012c; @wienandGenomicAnalysesFlowsorted2019b]||

          +|[ARID1A](ARID1A)|Tier 1 GE[@zhangGeneticHeterogeneityDiffuse2013], FE[@barisicARID1AOrchestratesSWI2024]|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)|[@krysiakRecurrentSomaticMutations2017b; @loveGeneticLandscapeMutations2012; @rossiCodingGenomeSplenic2012c; @wienandGenomicAnalysesFlowsorted2019b]||

           |[ATM](ATM)|Tier 1 GE[@reddyGeneticFunctionalDrivers2017]|[Reddy et al](papers/reddyGeneticFunctionalDrivers2017)|[@beaLandscapeSomaticMutations2013; @braggioGenomicAnalysisMarginal2012]||

           |[B2M](B2M)|Tier 1 GE[@morinFrequentMutationHistonemodifying2011], FE[@challa-malladiCombinedGeneticInactivationa]|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)|[@pararajalingamCodingNoncodingDrivers2020; @reichelFlowSortingExome2015a]||

           |[BCL10](BCL10)|Tier 1 GE[@morinFrequentMutationHistonemodifying2011], FE[@xiaBCL10MutationsDefine2022]|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)|[@russler-germainMutationsAssociatedProgression2023b; @spinaGeneticsNodalMarginal2016b]||

          @@ -102,7 +102,7 @@ link-citations: true

           |[NOTCH1](NOTCH1)|Tier 1 GE[@pasqualucciAnalysisCodingGenome2011], CE[@kridelWholeTranscriptomeSequencing2012]|[Pasqualucci et al](papers/pasqualucciAnalysisCodingGenome2011)|[@beaLandscapeSomaticMutations2013; @loveGeneticLandscapeMutations2012; @rossiCodingGenomeSplenic2012c]||

           |[NOTCH2](NOTCH2)|Tier 1 GE[@zhangGeneticHeterogeneityDiffuse2013], CE[@campos-martinClinicalDiagnosticRelevance2017]|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)|[@beaLandscapeSomaticMutations2013; @rossiCodingGenomeSplenic2012c]||

           |[OSBPL10](OSBPL10)|Tier 1 GE[@zhangGeneticHeterogeneityDiffuse2013], CE[@dobashiTP53OSBPL10Alterations2018b]|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)|||

          -|[P2RY8](P2RY8)|Tier 1 GE[@lohrDiscoveryPrioritizationSomatic2012a]|[Lohr et al](papers/lohrDiscoveryPrioritizationSomatic2012a)|[@muppidiLossSignalingGa132014b]||

          +|[P2RY8](P2RY8)|Tier 1 GE[@lohrDiscoveryPrioritizationSomatic2012a], FE[@muppidiLossSignalingGa132014b]|[Lohr et al](papers/lohrDiscoveryPrioritizationSomatic2012a)|[@muppidiLossSignalingGa132014b]||

           |[PIM1](PIM1)|Tier 1 GE[@pasqualucciHypermutationMultipleProtooncogenes2001a]|[Pasqualucci et al](papers/pasqualucciHypermutationMultipleProtooncogenes2001a)|[@burkhardtClinicalRelevanceMolecular2022b; @dunsCharacterizationDLBCLPMBL2021b]||

           |[PIM2](PIM2)|Tier 1 GE[@arthurGenomewideDiscoverySomatic2018]|[Arthur et al](papers/arthurGenomewideDiscoverySomatic2018)|[@reichelFlowSortingExome2015a]||

           |[POU2AF1](POU2AF1)|Tier 1 GE[@chapuyMolecularSubtypesDiffuse2018b]|[Chapuy et al](papers/chapuyMolecularSubtypesDiffuse2018b)|[@krysiakRecurrentSomaticMutations2017b]||

          @@ -111,7 +111,7 @@ link-citations: true

           |[PTEN](PTEN)|Tier 1 GE[@reddyGeneticFunctionalDrivers2017]|[Reddy et al](papers/reddyGeneticFunctionalDrivers2017)|[@loveGeneticLandscapeMutations2012]||

           |[RB1](RB1)|Tier 1 GE[@morinMutationalStructuralAnalysis2013]|[Morin et al](papers/morinMutationalStructuralAnalysis2013)|[@zhangGenomicLandscapeMantle2014]||

           |[RFX7](RFX7)|Tier 1 GE||[@grandeGenomewideDiscoverySomatic2019]||

          -|[RHOA](RHOA)|Tier 1 GE[@zhangGeneticHeterogeneityDiffuse2013]|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)|[@richterRecurrentMutationID32012a]||

          +|[RHOA](RHOA)|Tier 1 GE[@zhangGeneticHeterogeneityDiffuse2013], FE[@ohayreInactivatingMutationsGNA132016]|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)|[@richterRecurrentMutationID32012a]||

           |[RRAGC](RRAGC)|Tier 1 GE[@okosunRecurrentMTORC1activatingRRAGC2016a]|[Okosun et al](papers/okosunRecurrentMTORC1activatingRRAGC2016a)|||

           |[S1PR2](S1PR2)|Tier 1 GE[@morinFrequentMutationHistonemodifying2011]|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)|[@muppidiLossSignalingGa132014b]||

           |[SETD1B](SETD1B)|Tier 1 GE[@albuquerqueEnhancingKnowledgeDiscovery2017a]|[Albuquerque et al](papers/albuquerqueEnhancingKnowledgeDiscovery2017a)|||

          @@ -210,7 +210,7 @@ link-citations: true

           |[HNF1B](HNF1B)|Tier 2 GE[@pasqualucciAnalysisCodingGenome2011]|[Pasqualucci et al](papers/pasqualucciAnalysisCodingGenome2011)|||

           |[HNRNPD](HNRNPD)|Tier 2 GE[@reddyGeneticFunctionalDrivers2017]|[Reddy et al](papers/reddyGeneticFunctionalDrivers2017)|||

           |[HNRNPH1](HNRNPH1)|Tier 2 GE[@pararajalingamCodingNoncodingDrivers2020], FE[@pararajalingamCodingNoncodingDrivers2020], CE[@pararajalingamCodingNoncodingDrivers2020]|[Pararajalingam et al](papers/pararajalingamCodingNoncodingDrivers2020)|||

          -|[ID3](ID3)|Tier 2 GE[@schmitzBurkittLymphomaPathogenesis2012]|[Schmitz et al](papers/schmitzBurkittLymphomaPathogenesis2012)|[@richterRecurrentMutationID32012a; @spinaGeneticsNodalMarginal2016b]||

          +|[ID3](ID3)|Tier 2 GE[@schmitzBurkittLymphomaPathogenesis2012], FE[@richterRecurrentMutationID32012a]|[Schmitz et al](papers/schmitzBurkittLymphomaPathogenesis2012)|[@richterRecurrentMutationID32012a; @spinaGeneticsNodalMarginal2016b]||

           |[IFNGR1](IFNGR1)|Tier 2 GE[@morinMutationalStructuralAnalysis2013]|[Morin et al](papers/morinMutationalStructuralAnalysis2013)||PASS|

           |[IGLL5](IGLL5)|Tier 2 GE[@chapuyMolecularSubtypesDiffuse2018b]|[Chapuy et al](papers/chapuyMolecularSubtypesDiffuse2018b)|[@deschGenotypingCirculatingTumor2020; @paneaWholeGenomeLandscape2019; @russler-germainMutationsAssociatedProgression2023b]||

           |[IKBKB](IKBKB)|Tier 2 GE[@reddyGeneticFunctionalDrivers2017]|[Reddy et al](papers/reddyGeneticFunctionalDrivers2017)|[@rossiAlterationBIRC3Multiple2011a; @wienandGenomicAnalysesFlowsorted2019b]|PASS|

...	...	@@ -17,7 +17,7 @@ link-citations: true
17	17	\|:-:\|:-:\|:-:\|:-\|:-\|
18	18	\|[ACTB](ACTB)\|Tier 1 GE[@lohrDiscoveryPrioritizationSomatic2012a]\|[Lohr et al](papers/lohrDiscoveryPrioritizationSomatic2012a)\|[@wienandGenomicAnalysesFlowsorted2019b]\|\|
19	19	\|[ACTG1](ACTG1)\|Tier 1 GE[@hubschmannMutationalMechanismsShaping2021b]\|[Hubschmann et al](papers/hubschmannMutationalMechanismsShaping2021b)\|[@deschGenotypingCirculatingTumor2020; @spinaGeneticsNodalMarginal2016b]\|\|
20		-\|[ARID1A](ARID1A)\|Tier 1 GE[@zhangGeneticHeterogeneityDiffuse2013]\|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)\|[@krysiakRecurrentSomaticMutations2017b; @loveGeneticLandscapeMutations2012; @rossiCodingGenomeSplenic2012c; @wienandGenomicAnalysesFlowsorted2019b]\|\|
	20	+\|[ARID1A](ARID1A)\|Tier 1 GE[@zhangGeneticHeterogeneityDiffuse2013], FE[@barisicARID1AOrchestratesSWI2024]\|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)\|[@krysiakRecurrentSomaticMutations2017b; @loveGeneticLandscapeMutations2012; @rossiCodingGenomeSplenic2012c; @wienandGenomicAnalysesFlowsorted2019b]\|\|
21	21	\|[ATM](ATM)\|Tier 1 GE[@reddyGeneticFunctionalDrivers2017]\|[Reddy et al](papers/reddyGeneticFunctionalDrivers2017)\|[@beaLandscapeSomaticMutations2013; @braggioGenomicAnalysisMarginal2012]\|\|
22	22	\|[B2M](B2M)\|Tier 1 GE[@morinFrequentMutationHistonemodifying2011], FE[@challa-malladiCombinedGeneticInactivationa]\|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)\|[@pararajalingamCodingNoncodingDrivers2020; @reichelFlowSortingExome2015a]\|\|
23	23	\|[BCL10](BCL10)\|Tier 1 GE[@morinFrequentMutationHistonemodifying2011], FE[@xiaBCL10MutationsDefine2022]\|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)\|[@russler-germainMutationsAssociatedProgression2023b; @spinaGeneticsNodalMarginal2016b]\|\|
...	...	@@ -102,7 +102,7 @@ link-citations: true
102	102	\|[NOTCH1](NOTCH1)\|Tier 1 GE[@pasqualucciAnalysisCodingGenome2011], CE[@kridelWholeTranscriptomeSequencing2012]\|[Pasqualucci et al](papers/pasqualucciAnalysisCodingGenome2011)\|[@beaLandscapeSomaticMutations2013; @loveGeneticLandscapeMutations2012; @rossiCodingGenomeSplenic2012c]\|\|
103	103	\|[NOTCH2](NOTCH2)\|Tier 1 GE[@zhangGeneticHeterogeneityDiffuse2013], CE[@campos-martinClinicalDiagnosticRelevance2017]\|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)\|[@beaLandscapeSomaticMutations2013; @rossiCodingGenomeSplenic2012c]\|\|
104	104	\|[OSBPL10](OSBPL10)\|Tier 1 GE[@zhangGeneticHeterogeneityDiffuse2013], CE[@dobashiTP53OSBPL10Alterations2018b]\|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)\|\|\|
105		-\|[P2RY8](P2RY8)\|Tier 1 GE[@lohrDiscoveryPrioritizationSomatic2012a]\|[Lohr et al](papers/lohrDiscoveryPrioritizationSomatic2012a)\|[@muppidiLossSignalingGa132014b]\|\|
	105	+\|[P2RY8](P2RY8)\|Tier 1 GE[@lohrDiscoveryPrioritizationSomatic2012a], FE[@muppidiLossSignalingGa132014b]\|[Lohr et al](papers/lohrDiscoveryPrioritizationSomatic2012a)\|[@muppidiLossSignalingGa132014b]\|\|
106	106	\|[PIM1](PIM1)\|Tier 1 GE[@pasqualucciHypermutationMultipleProtooncogenes2001a]\|[Pasqualucci et al](papers/pasqualucciHypermutationMultipleProtooncogenes2001a)\|[@burkhardtClinicalRelevanceMolecular2022b; @dunsCharacterizationDLBCLPMBL2021b]\|\|
107	107	\|[PIM2](PIM2)\|Tier 1 GE[@arthurGenomewideDiscoverySomatic2018]\|[Arthur et al](papers/arthurGenomewideDiscoverySomatic2018)\|[@reichelFlowSortingExome2015a]\|\|
108	108	\|[POU2AF1](POU2AF1)\|Tier 1 GE[@chapuyMolecularSubtypesDiffuse2018b]\|[Chapuy et al](papers/chapuyMolecularSubtypesDiffuse2018b)\|[@krysiakRecurrentSomaticMutations2017b]\|\|
...	...	@@ -111,7 +111,7 @@ link-citations: true
111	111	\|[PTEN](PTEN)\|Tier 1 GE[@reddyGeneticFunctionalDrivers2017]\|[Reddy et al](papers/reddyGeneticFunctionalDrivers2017)\|[@loveGeneticLandscapeMutations2012]\|\|
112	112	\|[RB1](RB1)\|Tier 1 GE[@morinMutationalStructuralAnalysis2013]\|[Morin et al](papers/morinMutationalStructuralAnalysis2013)\|[@zhangGenomicLandscapeMantle2014]\|\|
113	113	\|[RFX7](RFX7)\|Tier 1 GE\|\|[@grandeGenomewideDiscoverySomatic2019]\|\|
114		-\|[RHOA](RHOA)\|Tier 1 GE[@zhangGeneticHeterogeneityDiffuse2013]\|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)\|[@richterRecurrentMutationID32012a]\|\|
	114	+\|[RHOA](RHOA)\|Tier 1 GE[@zhangGeneticHeterogeneityDiffuse2013], FE[@ohayreInactivatingMutationsGNA132016]\|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)\|[@richterRecurrentMutationID32012a]\|\|
115	115	\|[RRAGC](RRAGC)\|Tier 1 GE[@okosunRecurrentMTORC1activatingRRAGC2016a]\|[Okosun et al](papers/okosunRecurrentMTORC1activatingRRAGC2016a)\|\|\|
116	116	\|[S1PR2](S1PR2)\|Tier 1 GE[@morinFrequentMutationHistonemodifying2011]\|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)\|[@muppidiLossSignalingGa132014b]\|\|
117	117	\|[SETD1B](SETD1B)\|Tier 1 GE[@albuquerqueEnhancingKnowledgeDiscovery2017a]\|[Albuquerque et al](papers/albuquerqueEnhancingKnowledgeDiscovery2017a)\|\|\|
...	...	@@ -210,7 +210,7 @@ link-citations: true
210	210	\|[HNF1B](HNF1B)\|Tier 2 GE[@pasqualucciAnalysisCodingGenome2011]\|[Pasqualucci et al](papers/pasqualucciAnalysisCodingGenome2011)\|\|\|
211	211	\|[HNRNPD](HNRNPD)\|Tier 2 GE[@reddyGeneticFunctionalDrivers2017]\|[Reddy et al](papers/reddyGeneticFunctionalDrivers2017)\|\|\|
212	212	\|[HNRNPH1](HNRNPH1)\|Tier 2 GE[@pararajalingamCodingNoncodingDrivers2020], FE[@pararajalingamCodingNoncodingDrivers2020], CE[@pararajalingamCodingNoncodingDrivers2020]\|[Pararajalingam et al](papers/pararajalingamCodingNoncodingDrivers2020)\|\|\|
213		-\|[ID3](ID3)\|Tier 2 GE[@schmitzBurkittLymphomaPathogenesis2012]\|[Schmitz et al](papers/schmitzBurkittLymphomaPathogenesis2012)\|[@richterRecurrentMutationID32012a; @spinaGeneticsNodalMarginal2016b]\|\|
	213	+\|[ID3](ID3)\|Tier 2 GE[@schmitzBurkittLymphomaPathogenesis2012], FE[@richterRecurrentMutationID32012a]\|[Schmitz et al](papers/schmitzBurkittLymphomaPathogenesis2012)\|[@richterRecurrentMutationID32012a; @spinaGeneticsNodalMarginal2016b]\|\|
214	214	\|[IFNGR1](IFNGR1)\|Tier 2 GE[@morinMutationalStructuralAnalysis2013]\|[Morin et al](papers/morinMutationalStructuralAnalysis2013)\|\|PASS\|
215	215	\|[IGLL5](IGLL5)\|Tier 2 GE[@chapuyMolecularSubtypesDiffuse2018b]\|[Chapuy et al](papers/chapuyMolecularSubtypesDiffuse2018b)\|[@deschGenotypingCirculatingTumor2020; @paneaWholeGenomeLandscape2019; @russler-germainMutationsAssociatedProgression2023b]\|\|
216	216	\|[IKBKB](IKBKB)\|Tier 2 GE[@reddyGeneticFunctionalDrivers2017]\|[Reddy et al](papers/reddyGeneticFunctionalDrivers2017)\|[@rossiAlterationBIRC3Multiple2011a; @wienandGenomicAnalysesFlowsorted2019b]\|PASS\|