ICK.md
... ...
@@ -38,3 +38,23 @@ nocite: |
38 38
39 39
[[include:browser_ICK.md]]
40 40
41
+
42
+<!-- ORIGIN: loveGeneticLandscapeMutations2012 -->
43
+<!-- BL: loveGeneticLandscapeMutations2012 -->
44
+
45
+## Representative Mutations
46
+
47
+![](primary/Love_ICK.svg)
48
+**Rating**
49
+&starf; &star; &star; &star; &star;
50
+
51
+
52
+## All Mutations
53
+
54
+[1092](https://www.bcgsc.ca/downloads/morinlab/GAMBL/Love/1092_reports.html)
55
+[516](https://www.bcgsc.ca/downloads/morinlab/GAMBL/Love/516_reports.html)
56
+
57
+[[include:tables/mermaid_ICK.md]]
58
+
59
+## References
60
+
PLCG2.md
... ...
@@ -40,6 +40,6 @@ nocite: |
40 40
<!-- ORIGIN: paneaWholeGenomeLandscape2019 -->
41 41
<!-- BL: paneaWholeGenomeLandscape2019 -->
42 42
43
-[[include:mermaid_PLCG2.md]]
43
+[[include:tables/mermaid_PLCG2.md]]
44 44
45 45
## References
PLEKHA7.md
... ...
@@ -19,7 +19,7 @@ nocite: |
19 19
20 20
21 21
22
-[[include:mermaid_PLEKHA7.md]]
22
+[[include:tables/mermaid_PLEKHA7.md]]
23 23
24 24
## References
25 25
PLXNB3.md
... ...
@@ -36,7 +36,7 @@ nocite: |
36 36
<!-- MCL: zhangGenomicLandscapeMantle2014 -->
37 37
<!-- MZL: spinaGeneticsNodalMarginal2016b -->
38 38
39
-[[include:mermaid_PLXNB3.md]]
39
+[[include:tables/mermaid_PLXNB3.md]]
40 40
41 41
## References
42 42
PMS1.md
... ...
@@ -19,7 +19,7 @@ nocite: |
19 19
20 20
21 21
22
-[[include:mermaid_PMS1.md]]
22
+[[include:tables/mermaid_PMS1.md]]
23 23
24 24
## References
25 25
PNLIPRP1.md
... ...
@@ -19,7 +19,7 @@ nocite: |
19 19
20 20
21 21
22
-[[include:mermaid_PNLIPRP1.md]]
22
+[[include:tables/mermaid_PNLIPRP1.md]]
23 23
24 24
## References
25 25
PNPO.md
... ...
@@ -40,7 +40,7 @@ Mutations in this gene were first described in DLBCL and FL in 2021 by Hübschma
40 40
[SP192997](https://www.bcgsc.ca/downloads/morinlab/GAMBL/MALY/SP192997.html)
41 41
[SP116610](https://www.bcgsc.ca/downloads/morinlab/GAMBL/MALY/SP116610.html)
42 42
43
-[[include:mermaid_PNPO.md]]
43
+[[include:tables/mermaid_PNPO.md]]
44 44
45 45
## References
46 46
PNPT1.md
... ...
@@ -19,7 +19,7 @@ nocite: |
19 19
20 20
21 21
22
-[[include:mermaid_PNPT1.md]]
22
+[[include:tables/mermaid_PNPT1.md]]
23 23
24 24
## References
25 25
POGZ.md
... ...
@@ -38,7 +38,7 @@ nocite: |
38 38
39 39
[RG116](https://www.bcgsc.ca/downloads/morinlab/GAMBL/Morin_2013/RG116.html)
40 40
41
-[[include:mermaid_POGZ.md]]
41
+[[include:tables/mermaid_POGZ.md]]
42 42
43 43
## References
44 44
POLD3.md
... ...
@@ -19,7 +19,7 @@ nocite: |
19 19
20 20
21 21
22
-[[include:mermaid_POLD3.md]]
22
+[[include:tables/mermaid_POLD3.md]]
23 23
24 24
## References
25 25
POLE.md
... ...
@@ -19,7 +19,7 @@ nocite: |
19 19
20 20
21 21
22
-[[include:mermaid_POLE.md]]
22
+[[include:tables/mermaid_POLE.md]]
23 23
24 24
## References
25 25
POLQ.md
... ...
@@ -19,7 +19,7 @@ nocite: |
19 19
20 20
21 21
22
-[[include:mermaid_POLQ.md]]
22
+[[include:tables/mermaid_POLQ.md]]
23 23
24 24
## References
25 25
POLRMT.md
... ...
@@ -47,7 +47,7 @@ nocite: |
47 47
[1101](https://www.bcgsc.ca/downloads/morinlab/GAMBL/Love/1101_reports.html)
48 48
[670](https://www.bcgsc.ca/downloads/morinlab/GAMBL/Love/670_reports.html)
49 49
50
-[[include:mermaid_POLRMT.md]]
50
+[[include:tables/mermaid_POLRMT.md]]
51 51
52 52
## References
53 53
POR.md
... ...
@@ -45,7 +45,7 @@ nocite: |
45 45
&starf; &star; &star; &star; &star;
46 46
47 47
48
-[[include:mermaid_POR.md]]
48
+[[include:tables/mermaid_POR.md]]
49 49
50 50
## References
51 51
POT1.md
... ...
@@ -37,7 +37,7 @@ nocite: |
37 37
<!-- ORIGIN: zhangGenomicLandscapeMantle2014 -->
38 38
<!-- MCL: zhangGenomicLandscapeMantle2014 -->
39 39
40
-[[include:mermaid_POT1.md]]
40
+[[include:tables/mermaid_POT1.md]]
41 41
42 42
## References
43 43
POU2AF1.md
... ...
@@ -56,7 +56,7 @@ Driver mutations affecting this gene in DLBCL have been experimentally demonstra
56 56
<!-- ORIGIN: krysiakRecurrentSomaticMutations2017b -->
57 57
<!-- FL: krysiakRecurrentSomaticMutations2017b -->
58 58
59
-[[include:mermaid_POU2AF1.md]]
59
+[[include:tables/mermaid_POU2AF1.md]]
60 60
61 61
## References
62 62
POU2F2.md
... ...
@@ -45,7 +45,7 @@ Driver mutations affecting this gene in FL/DLBCL have been experimentally demons
45 45
<!-- DLBCL: zhangGeneticHeterogeneityDiffuse2013 -->
46 46
<!-- FL: krysiakRecurrentSomaticMutations2017b -->
47 47
48
-[[include:mermaid_POU2F2.md]]
48
+[[include:tables/mermaid_POU2F2.md]]
49 49
50 50
## References
51 51
PPARGC1A.md
... ...
@@ -19,7 +19,7 @@ nocite: |
19 19
20 20
21 21
22
-[[include:mermaid_PPARGC1A.md]]
22
+[[include:tables/mermaid_PPARGC1A.md]]
23 23
24 24
## References
25 25
PPP2R2B.md
... ...
@@ -19,7 +19,7 @@ nocite: |
19 19
20 20
21 21
22
-[[include:mermaid_PPP2R2B.md]]
22
+[[include:tables/mermaid_PPP2R2B.md]]
23 23
24 24
## References
25 25
PPP2R5A.md
... ...
@@ -19,7 +19,7 @@ nocite: |
19 19
20 20
21 21
22
-[[include:mermaid_PPP2R5A.md]]
22
+[[include:tables/mermaid_PPP2R5A.md]]
23 23
24 24
## References
25 25
PPP4C.md
... ...
@@ -43,6 +43,6 @@ nocite: |
43 43
[SP192997](https://www.bcgsc.ca/downloads/morinlab/GAMBL/MALY/SP192997.html)
44 44
[SP59320](https://www.bcgsc.ca/downloads/morinlab/GAMBL/MALY/SP59320.html)
45 45
46
-[[include:mermaid_PPP4C.md]]
46
+[[include:tables/mermaid_PPP4C.md]]
47 47
48 48
## References
PPP6R2.md
... ...
@@ -34,7 +34,7 @@ nocite: |
34 34
<!-- ORIGIN: burkhardtClinicalRelevanceMolecular2022b -->
35 35
<!-- BL: burkhardtClinicalRelevanceMolecular2022b -->
36 36
37
-[[include:mermaid_PPP6R2.md]]
37
+[[include:tables/mermaid_PPP6R2.md]]
38 38
39 39
## References
40 40
PPWD1.md
... ...
@@ -19,7 +19,7 @@ nocite: |
19 19
20 20
21 21
22
-[[include:mermaid_PPWD1.md]]
22
+[[include:tables/mermaid_PPWD1.md]]
23 23
24 24
## References
25 25
PRDM1.md
... ...
@@ -48,7 +48,7 @@ Driver mutations affecting this gene in DLBCL have been experimentally demonstra
48 48
<!-- DLBCL: pasqualucciInactivationPRDM1BLIMP12006a -->
49 49
<!-- BL: 2 -->
50 50
51
-[[include:mermaid_PRDM1.md]]
51
+[[include:tables/mermaid_PRDM1.md]]
52 52
53 53
## References
54 54
PRDM16.md
... ...
@@ -19,7 +19,7 @@ nocite: |
19 19
20 20
21 21
22
-[[include:mermaid_PRDM16.md]]
22
+[[include:tables/mermaid_PRDM16.md]]
23 23
24 24
## References
25 25
PREX1.md
... ...
@@ -34,7 +34,7 @@ nocite: |
34 34
<!-- ORIGIN: burkhardtClinicalRelevanceMolecular2022b -->
35 35
<!-- BL: burkhardtClinicalRelevanceMolecular2022b -->
36 36
37
-[[include:mermaid_PREX1.md]]
37
+[[include:tables/mermaid_PREX1.md]]
38 38
39 39
## References
40 40
PRKCB.md
... ...
@@ -39,7 +39,7 @@ nocite: |
39 39
[RG014](https://www.bcgsc.ca/downloads/morinlab/GAMBL/Morin_2013/RG014.html)
40 40
[RG026](https://www.bcgsc.ca/downloads/morinlab/GAMBL/Morin_2013/RG026.html)
41 41
42
-[[include:mermaid_PRKCB.md]]
42
+[[include:tables/mermaid_PRKCB.md]]
43 43
44 44
## References
45 45
PRKCB1.md
... ...
@@ -19,7 +19,7 @@ nocite: |
19 19
20 20
21 21
22
-[[include:mermaid_PRKCB1.md]]
22
+[[include:tables/mermaid_PRKCB1.md]]
23 23
24 24
## References
25 25
PRKCQ.md
... ...
@@ -19,7 +19,7 @@ nocite: |
19 19
20 20
21 21
22
-[[include:mermaid_PRKCQ.md]]
22
+[[include:tables/mermaid_PRKCQ.md]]
23 23
24 24
## References
25 25
PRKDC.md
... ...
@@ -46,6 +46,6 @@ nocite: |
46 46
[SP194065](https://www.bcgsc.ca/downloads/morinlab/GAMBL/MALY/SP194065.html)
47 47
[SP116720](https://www.bcgsc.ca/downloads/morinlab/GAMBL/MALY/SP116720.html)
48 48
49
-[[include:mermaid_PRKDC.md]]
49
+[[include:tables/mermaid_PRKDC.md]]
50 50
51 51
## References
PROS1.md
... ...
@@ -19,7 +19,7 @@ nocite: |
19 19
20 20
21 21
22
-[[include:mermaid_PROS1.md]]
22
+[[include:tables/mermaid_PROS1.md]]
23 23
24 24
## References
25 25
PRPS1.md
... ...
@@ -40,7 +40,7 @@ nocite: |
40 40
[DLBCL-RICOVER_288-Tumor](https://bcgsc.ca/downloads/morinlab/GAMBL/Chapuy_2018/DLBCL-RICOVER_288-Tumor.html)
41 41
[DLBCL-RICOVER_449-Tumor](https://bcgsc.ca/downloads/morinlab/GAMBL/Chapuy_2018/DLBCL-RICOVER_449-Tumor.html)
42 42
43
-[[include:mermaid_PRPS1.md]]
43
+[[include:tables/mermaid_PRPS1.md]]
44 44
45 45
## References
46 46
PRSS22.md
... ...
@@ -48,7 +48,7 @@ Due to [minimal support](PRSS22#representative-mutation) in the original primary
48 48
**Rating**
49 49
&starf; &star; &star; &star; &star;
50 50
51
-[[include:mermaid_PRSS22.md]]
51
+[[include:tables/mermaid_PRSS22.md]]
52 52
53 53
## References
54 54
PRSS7.md
... ...
@@ -19,7 +19,7 @@ nocite: |
19 19
20 20
21 21
22
-[[include:mermaid_PRSS7.md]]
22
+[[include:tables/mermaid_PRSS7.md]]
23 23
24 24
## References
25 25
PRUNE2.md
... ...
@@ -28,7 +28,7 @@ nocite: |
28 28
|MCL|GAMBL Genome |1.17 |
29 29
30 30
31
-[[include:mermaid_PRUNE2.md]]
31
+[[include:tables/mermaid_PRUNE2.md]]
32 32
33 33
## References
34 34
PTCH1.md
... ...
@@ -19,7 +19,7 @@ nocite: |
19 19
20 20
21 21
22
-[[include:mermaid_PTCH1.md]]
22
+[[include:tables/mermaid_PTCH1.md]]
23 23
24 24
## References
25 25
PTEN.md
... ...
@@ -35,7 +35,7 @@ Driver mutations affecting this gene in BL/DLBCL have been experimentally demons
35 35
<!-- ORIGIN: loveGeneticLandscapeMutations2012 -->
36 36
<!-- BL: loveGeneticLandscapeMutations2012 -->
37 37
38
-[[include:mermaid_PTEN.md]]
38
+[[include:tables/mermaid_PTEN.md]]
39 39
40 40
## References
41 41
PTPN1.md
... ...
@@ -43,7 +43,7 @@ nocite: |
43 43
<!-- ORIGIN: gunawardanaRecurrentSomaticMutations2014c -->
44 44
<!-- PMBL: gunawardanaRecurrentSomaticMutations2014c -->
45 45
46
-[[include:mermaid_PTPN1.md]]
46
+[[include:tables/mermaid_PTPN1.md]]
47 47
48 48
## References
49 49
PTPN14.md
... ...
@@ -19,7 +19,7 @@ nocite: |
19 19
20 20
21 21
22
-[[include:mermaid_PTPN14.md]]
22
+[[include:tables/mermaid_PTPN14.md]]
23 23
24 24
## References
25 25
PTPN21.md
... ...
@@ -19,7 +19,7 @@ nocite: |
19 19
20 20
21 21
22
-[[include:mermaid_PTPN21.md]]
22
+[[include:tables/mermaid_PTPN21.md]]
23 23
24 24
## References
25 25
PTPN23.md
... ...
@@ -39,7 +39,7 @@ nocite: |
39 39
40 40
[RG040](https://www.bcgsc.ca/downloads/morinlab/GAMBL/Morin_2013/RG040.html)
41 41
42
-[[include:mermaid_PTPN23.md]]
42
+[[include:tables/mermaid_PTPN23.md]]
43 43
44 44
## References
45 45
PTPN6.md
... ...
@@ -32,7 +32,7 @@ Driver mutations affecting this gene in DLBCL have been experimentally demonstra
32 32
<!-- ORIGIN: reddyGeneticFunctionalDrivers2017 -->
33 33
<!-- DLBCL: reddyGeneticFunctionalDrivers2017 -->
34 34
35
-[[include:mermaid_PTPN6.md]]
35
+[[include:tables/mermaid_PTPN6.md]]
36 36
37 37
## References
38 38
PTPRD.md
... ...
@@ -42,7 +42,7 @@ nocite: |
42 42
<!-- ORIGIN: spinaGeneticsNodalMarginal2016b -->
43 43
<!-- MZL: spinaGeneticsNodalMarginal2016b -->
44 44
45
-[[include:mermaid_PTPRD.md]]
45
+[[include:tables/mermaid_PTPRD.md]]
46 46
47 47
## References
48 48
PTPRF.md
... ...
@@ -19,7 +19,7 @@ nocite: |
19 19
20 20
21 21
22
-[[include:mermaid_PTPRF.md]]
22
+[[include:tables/mermaid_PTPRF.md]]
23 23
24 24
## References
25 25
PTPRK.md
... ...
@@ -74,7 +74,7 @@ nocite: |
74 74
[Reddy_3937T](https://www.bcgsc.ca/downloads/morinlab/GAMBL/Reddy/igv_reports/Reddy_3937T.html)
75 75
[Reddy_823T](https://www.bcgsc.ca/downloads/morinlab/GAMBL/Reddy/igv_reports/Reddy_823T.html)
76 76
77
-[[include:mermaid_PTPRK.md]]
77
+[[include:tables/mermaid_PTPRK.md]]
78 78
79 79
## References
80 80
PTPRN.md
... ...
@@ -45,7 +45,7 @@ nocite: |
45 45
&starf; &star; &star; &star; &star;
46 46
47 47
48
-[[include:mermaid_PTPRN.md]]
48
+[[include:tables/mermaid_PTPRN.md]]
49 49
50 50
## References
51 51
PTPRT.md
... ...
@@ -19,7 +19,7 @@ nocite: |
19 19
20 20
21 21
22
-[[include:mermaid_PTPRT.md]]
22
+[[include:tables/mermaid_PTPRT.md]]
23 23
24 24
## References
25 25
PXDNL.md
... ...
@@ -51,6 +51,6 @@ nocite: |
51 51
**Rating**
52 52
&starf; &starf; &star; &star; &star;
53 53
54
-[[include:mermaid_PXDNL.md]]
54
+[[include:tables/mermaid_PXDNL.md]]
55 55
56 56
## References
PXK.md
... ...
@@ -19,7 +19,7 @@ nocite: |
19 19
20 20
21 21
22
-[[include:mermaid_PXK.md]]
22
+[[include:tables/mermaid_PXK.md]]
23 23
24 24
## References
25 25
PZP.md
... ...
@@ -31,7 +31,7 @@ nocite: |
31 31
<!-- ORIGIN: russler-germainMutationsAssociatedProgression2023a -->
32 32
<!-- FL: russler-germainMutationsAssociatedProgression2023b -->
33 33
34
-[[include:mermaid_PZP.md]]
34
+[[include:tables/mermaid_PZP.md]]
35 35
36 36
## References
37 37
RAB3GAP1.md
... ...
@@ -19,7 +19,7 @@ nocite: |
19 19
20 20
21 21
22
-[[include:mermaid_RAB3GAP1.md]]
22
+[[include:tables/mermaid_RAB3GAP1.md]]
23 23
24 24
## References
25 25
RAC2.md
... ...
@@ -47,7 +47,7 @@ nocite: |
47 47
[SP124969](https://www.bcgsc.ca/downloads/morinlab/GAMBL/MALY/SP124969.html)
48 48
[SP124979](https://www.bcgsc.ca/downloads/morinlab/GAMBL/MALY/SP124979.html)
49 49
50
-[[include:mermaid_RAC2.md]]
50
+[[include:tables/mermaid_RAC2.md]]
51 51
52 52
## References
53 53
RAD9A.md
... ...
@@ -33,7 +33,7 @@ nocite: |
33 33
<!-- ORIGIN: chapuyMolecularSubtypesDiffuse2018b -->
34 34
<!-- DLBCL: chapuyMolecularSubtypesDiffuse2018b -->
35 35
36
-[[include:mermaid_RAD9A.md]]
36
+[[include:tables/mermaid_RAD9A.md]]
37 37
38 38
## References
39 39
RAF1.md
... ...
@@ -27,7 +27,7 @@ nocite: |
27 27
|FL|GAMBL Exome |0.287 |
28 28
29 29
30
-[[include:mermaid_RAF1.md]]
30
+[[include:tables/mermaid_RAF1.md]]
31 31
32 32
## References
33 33
RANBP2.md
... ...
@@ -28,7 +28,7 @@ nocite: |
28 28
|MCL|GAMBL Genome |1.17 |
29 29
30 30
31
-[[include:mermaid_RANBP2.md]]
31
+[[include:tables/mermaid_RANBP2.md]]
32 32
33 33
## References
34 34
RANBP6.md
... ...
@@ -40,7 +40,7 @@ nocite: |
40 40
&starf; &starf; &starf; &starf; &starf;
41 41
42 42
43
-[[include:mermaid_RANBP6.md]]
43
+[[include:tables/mermaid_RANBP6.md]]
44 44
45 45
## References
46 46
RAPGEF1.md
... ...
@@ -19,7 +19,7 @@ nocite: |
19 19
20 20
21 21
22
-[[include:mermaid_RAPGEF1.md]]
22
+[[include:tables/mermaid_RAPGEF1.md]]
23 23
24 24
## References
25 25
RAPGEF2.md
... ...
@@ -19,7 +19,7 @@ nocite: |
19 19
20 20
21 21
22
-[[include:mermaid_RAPGEF2.md]]
22
+[[include:tables/mermaid_RAPGEF2.md]]
23 23
24 24
## References
25 25
RAPGEF3.md
... ...
@@ -19,7 +19,7 @@ nocite: |
19 19
20 20
21 21
22
-[[include:mermaid_RAPGEF3.md]]
22
+[[include:tables/mermaid_RAPGEF3.md]]
23 23
24 24
## References
25 25
RARA.md
... ...
@@ -39,7 +39,7 @@ nocite: |
39 39
<!-- ORIGIN: reddyGeneticFunctionalDrivers2017 -->
40 40
<!-- DLBCL: reddyGeneticFunctionalDrivers2017 -->
41 41
42
-[[include:mermaid_RARA.md]]
42
+[[include:tables/mermaid_RARA.md]]
43 43
44 44
## References
45 45
RASGEF1A.md
... ...
@@ -19,7 +19,7 @@ nocite: |
19 19
20 20
21 21
22
-[[include:mermaid_RASGEF1A.md]]
22
+[[include:tables/mermaid_RASGEF1A.md]]
23 23
24 24
## References
25 25
RB1.md
... ...
@@ -34,7 +34,7 @@ Driver mutations affecting this gene in DLBCL have been experimentally demonstra
34 34
<!-- DLBCL: morinMutationalStructuralAnalysis2013 -->
35 35
<!-- MCL: zhangGenomicLandscapeMantle2014 -->
36 36
37
-[[include:mermaid_RB1.md]]
37
+[[include:tables/mermaid_RB1.md]]
38 38
39 39
## References
40 40
RBM15B.md
... ...
@@ -19,7 +19,7 @@ nocite: |
19 19
20 20
21 21
22
-[[include:mermaid_RBM15B.md]]
22
+[[include:tables/mermaid_RBM15B.md]]
23 23
24 24
## References
25 25
RBM38.md
... ...
@@ -28,7 +28,7 @@ nocite: |
28 28
|MCL|GAMBL Genome |0.585 |
29 29
30 30
31
-[[include:mermaid_RBM38.md]]
31
+[[include:tables/mermaid_RBM38.md]]
32 32
33 33
## References
34 34
RBM6.md
... ...
@@ -37,7 +37,7 @@ Mutations in this gene were first described in DLBCL and FL in 2021 by Hübschma
37 37
[SP193025](https://www.bcgsc.ca/downloads/morinlab/GAMBL/MALY/SP193025.html)
38 38
[SP59320](https://www.bcgsc.ca/downloads/morinlab/GAMBL/MALY/SP59320.html)
39 39
40
-[[include:mermaid_RBM6.md]]
40
+[[include:tables/mermaid_RBM6.md]]
41 41
42 42
## References
43 43
RBP3.md
... ...
@@ -45,7 +45,7 @@ nocite: |
45 45
&starf; &star; &star; &star; &star;
46 46
47 47
48
-[[include:mermaid_RBP3.md]]
48
+[[include:tables/mermaid_RBP3.md]]
49 49
50 50
## References
51 51
RCOR1.md
... ...
@@ -27,7 +27,7 @@ nocite: |
27 27
|FL|GAMBL Exome |0.573 |
28 28
29 29
30
-[[include:mermaid_RCOR1.md]]
30
+[[include:tables/mermaid_RCOR1.md]]
31 31
32 32
## References
33 33
RECQL4.md
... ...
@@ -19,7 +19,7 @@ nocite: |
19 19
20 20
21 21
22
-[[include:mermaid_RECQL4.md]]
22
+[[include:tables/mermaid_RECQL4.md]]
23 23
24 24
## References
25 25
RELN.md
... ...
@@ -28,7 +28,7 @@ nocite: |
28 28
|MCL|GAMBL Genome |2.339 |
29 29
30 30
31
-[[include:mermaid_RELN.md]]
31
+[[include:tables/mermaid_RELN.md]]
32 32
33 33
## References
34 34
RET.md
... ...
@@ -51,7 +51,7 @@ Due to [minimal support](RET#representative-mutation) in the original primary da
51 51
&starf; &star; &star; &star; &star;
52 52
53 53
54
-[[include:mermaid_RET.md]]
54
+[[include:tables/mermaid_RET.md]]
55 55
56 56
## References
57 57
REV3L.md
... ...
@@ -34,7 +34,7 @@ nocite: |
34 34
<!-- ORIGIN: burkhardtClinicalRelevanceMolecular2022b -->
35 35
<!-- BL: burkhardtClinicalRelevanceMolecular2022b -->
36 36
37
-[[include:mermaid_REV3L.md]]
37
+[[include:tables/mermaid_REV3L.md]]
38 38
39 39
## References
40 40
RFC1.md
... ...
@@ -19,7 +19,7 @@ nocite: |
19 19
20 20
21 21
22
-[[include:mermaid_RFC1.md]]
22
+[[include:tables/mermaid_RFC1.md]]
23 23
24 24
## References
25 25
RFTN1.md
... ...
@@ -41,7 +41,7 @@ nocite: |
41 41
<!-- PMBL: dunsCharacterizationDLBCLPMBL2021b -->
42 42
<!-- DLBCL: arthurGenomewideDiscoverySomatic2018 -->
43 43
44
-[[include:mermaid_RFTN1.md]]
44
+[[include:tables/mermaid_RFTN1.md]]
45 45
46 46
## References
47 47
RFX7.md
... ...
@@ -38,7 +38,7 @@ Driver mutations affecting this gene in DLBCL/BL have been experimentally demons
38 38
## Expression
39 39
![](images/gene_expression/RFX7_by_pathology.svg)
40 40
41
-[[include:mermaid_RFX7.md]]
41
+[[include:tables/mermaid_RFX7.md]]
42 42
43 43
## References
44 44
RGAG1.md
... ...
@@ -19,7 +19,7 @@ nocite: |
19 19
20 20
21 21
22
-[[include:mermaid_RGAG1.md]]
22
+[[include:tables/mermaid_RGAG1.md]]
23 23
24 24
## References
25 25
RGS1.md
... ...
@@ -25,7 +25,7 @@ nocite: |
25 25
|DLBCL|GAMBL Genome |1.316 |
26 26
27 27
28
-[[include:mermaid_RGS1.md]]
28
+[[include:tables/mermaid_RGS1.md]]
29 29
30 30
## References
31 31
RGS4.md
... ...
@@ -27,7 +27,7 @@ nocite: |
27 27
|MCL|GAMBL Genome |1.17 |
28 28
29 29
30
-[[include:mermaid_RGS4.md]]
30
+[[include:tables/mermaid_RGS4.md]]
31 31
32 32
## References
33 33
RHOA.md
... ...
@@ -48,7 +48,7 @@ Driver mutations affecting this gene in DLBCL/BL have been experimentally demons
48 48
<!-- DLBCL: pasqualucciHypermutationMultipleProtooncogenes2001a -->
49 49
<!-- BL: richterRecurrentMutationID32012a -->
50 50
51
-[[include:mermaid_RHOA.md]]
51
+[[include:tables/mermaid_RHOA.md]]
52 52
53 53
## References
54 54
RHPN2.md
... ...
@@ -19,7 +19,7 @@ nocite: |
19 19
20 20
21 21
22
-[[include:mermaid_RHPN2.md]]
22
+[[include:tables/mermaid_RHPN2.md]]
23 23
24 24
## References
25 25
RIF1.md
... ...
@@ -19,7 +19,7 @@ nocite: |
19 19
20 20
21 21
22
-[[include:mermaid_RIF1.md]]
22
+[[include:tables/mermaid_RIF1.md]]
23 23
24 24
## References
25 25
RIMS4.md
... ...
@@ -19,7 +19,7 @@ nocite: |
19 19
20 20
21 21
22
-[[include:mermaid_RIMS4.md]]
22
+[[include:tables/mermaid_RIMS4.md]]
23 23
24 24
## References
25 25
RNF144B.md
... ...
@@ -39,7 +39,7 @@ nocite: |
39 39
<!-- ORIGIN: paneaWholeGenomeLandscape2019 -->
40 40
<!-- BL: paneaWholeGenomeLandscape2019 -->
41 41
42
-[[include:mermaid_RNF144B.md]]
42
+[[include:tables/mermaid_RNF144B.md]]
43 43
44 44
## References
45 45
ROBO2.md
... ...
@@ -32,7 +32,7 @@ nocite: |
32 32
<!-- ORIGIN: zhangGenomicLandscapeMantle2014 -->
33 33
<!-- MCL: zhangGenomicLandscapeMantle2014 -->
34 34
35
-[[include:mermaid_ROBO2.md]]
35
+[[include:tables/mermaid_ROBO2.md]]
36 36
37 37
## References
38 38
ROCK1.md
... ...
@@ -28,7 +28,7 @@ nocite: |
28 28
|MCL|GAMBL Genome |0.585 |
29 29
30 30
31
-[[include:mermaid_ROCK1.md]]
31
+[[include:tables/mermaid_ROCK1.md]]
32 32
33 33
## References
34 34
ROR2.md
... ...
@@ -19,7 +19,7 @@ nocite: |
19 19
20 20
21 21
22
-[[include:mermaid_ROR2.md]]
22
+[[include:tables/mermaid_ROR2.md]]
23 23
24 24
## References
25 25
RPL10.md
... ...
@@ -34,7 +34,7 @@ nocite: |
34 34
<!-- ORIGIN: burkhardtClinicalRelevanceMolecular2022b -->
35 35
<!-- BL: burkhardtClinicalRelevanceMolecular2022b -->
36 36
37
-[[include:mermaid_RPL10.md]]
37
+[[include:tables/mermaid_RPL10.md]]
38 38
39 39
## References
40 40
RPL1L.md
... ...
@@ -22,7 +22,7 @@ nocite: |
22 22
|:------:|:----:|:----:|
23 23
24 24
25
-[[include:mermaid_RPL1L.md]]
25
+[[include:tables/mermaid_RPL1L.md]]
26 26
27 27
## References
28 28
RPTOR.md
... ...
@@ -19,7 +19,7 @@ nocite: |
19 19
20 20
21 21
22
-[[include:mermaid_RPTOR.md]]
22
+[[include:tables/mermaid_RPTOR.md]]
23 23
24 24
## References
25 25
RRAGC.md
... ...
@@ -35,7 +35,7 @@ Driver mutations affecting this gene in DLBCL/FL have been experimentally demons
35 35
<!-- ORIGIN: okosunRecurrentMTORC1activatingRRAGC2016a -->
36 36
<!-- DLBCL: okosunRecurrentMTORC1activatingRRAGC2016a -->
37 37
38
-[[include:mermaid_RRAGC.md]]
38
+[[include:tables/mermaid_RRAGC.md]]
39 39
40 40
## References
41 41
RSL1D1.md
... ...
@@ -19,7 +19,7 @@ nocite: |
19 19
20 20
21 21
22
-[[include:mermaid_RSL1D1.md]]
22
+[[include:tables/mermaid_RSL1D1.md]]
23 23
24 24
## References
25 25
RUNDC1.md
... ...
@@ -19,7 +19,7 @@ nocite: |
19 19
20 20
21 21
22
-[[include:mermaid_RUNDC1.md]]
22
+[[include:tables/mermaid_RUNDC1.md]]
23 23
24 24
## References
25 25
RUNX1.md
... ...
@@ -62,7 +62,7 @@ nocite: |
62 62
[Reddy_799T](https://www.bcgsc.ca/downloads/morinlab/GAMBL/Reddy/igv_reports/Reddy_799T.html)
63 63
[Reddy_830T](https://www.bcgsc.ca/downloads/morinlab/GAMBL/Reddy/igv_reports/Reddy_830T.html)
64 64
65
-[[include:mermaid_RUNX1.md]]
65
+[[include:tables/mermaid_RUNX1.md]]
66 66
67 67
## References
68 68
RYR1.md
... ...
@@ -19,7 +19,7 @@ nocite: |
19 19
20 20
21 21
22
-[[include:mermaid_RYR1.md]]
22
+[[include:tables/mermaid_RYR1.md]]
23 23
24 24
## References
25 25
S1PR1.md
... ...
@@ -34,7 +34,7 @@ nocite: |
34 34
<!-- MCL: pararajalingamCodingNoncodingDrivers2020 -->
35 35
<!-- DLBCL: lohrDiscoveryPrioritizationSomatic2012a -->
36 36
37
-[[include:mermaid_S1PR1.md]]
37
+[[include:tables/mermaid_S1PR1.md]]
38 38
39 39
## References
40 40
S1PR2.md
... ...
@@ -49,7 +49,7 @@ Driver mutations affecting this gene in DLBCL have been experimentally demonstra
49 49
<!-- BL: muppidiLossSignalingGa132014b -->
50 50
<!-- DLBCL: morinFrequentMutationHistonemodifying2011 -->
51 51
52
-[[include:mermaid_S1PR2.md]]
52
+[[include:tables/mermaid_S1PR2.md]]
53 53
54 54
## References
55 55
SALL3.md
... ...
@@ -54,7 +54,7 @@ nocite: |
54 54
[513](https://www.bcgsc.ca/downloads/morinlab/GAMBL/Love/513_reports.html)
55 55
[515](https://www.bcgsc.ca/downloads/morinlab/GAMBL/Love/515_reports.html)
56 56
57
-[[include:mermaid_SALL3.md]]
57
+[[include:tables/mermaid_SALL3.md]]
58 58
59 59
## References
60 60
SAMD5.md
... ...
@@ -25,7 +25,7 @@ nocite: |
25 25
|FL|GAMBL Exome |0.287 |
26 26
27 27
28
-[[include:mermaid_SAMD5.md]]
28
+[[include:tables/mermaid_SAMD5.md]]
29 29
30 30
## References
31 31
SAMD9L.md
... ...
@@ -38,7 +38,7 @@ nocite: |
38 38
39 39
[RG014](https://www.bcgsc.ca/downloads/morinlab/GAMBL/Morin_2013/RG014.html)
40 40
41
-[[include:mermaid_SAMD9L.md]]
41
+[[include:tables/mermaid_SAMD9L.md]]
42 42
43 43
## References
44 44
SAPS3.md
... ...
@@ -19,7 +19,7 @@ nocite: |
19 19
20 20
21 21
22
-[[include:mermaid_SAPS3.md]]
22
+[[include:tables/mermaid_SAPS3.md]]
23 23
24 24
## References
25 25
SARM1.md
... ...
@@ -39,7 +39,7 @@ nocite: |
39 39
40 40
[RG043](https://www.bcgsc.ca/downloads/morinlab/GAMBL/Morin_2013/RG043.html)
41 41
42
-[[include:mermaid_SARM1.md]]
42
+[[include:tables/mermaid_SARM1.md]]
43 43
44 44
## References
45 45
SBF1.md
... ...
@@ -41,7 +41,7 @@ nocite: |
41 41
&starf; &starf; &star; &star; &star;
42 42
43 43
44
-[[include:mermaid_SBF1.md]]
44
+[[include:tables/mermaid_SBF1.md]]
45 45
46 46
## References
47 47
SCG3.md
... ...
@@ -26,7 +26,7 @@ nocite: |
26 26
|FL|GAMBL Exome |0.287 |
27 27
28 28
29
-[[include:mermaid_SCG3.md]]
29
+[[include:tables/mermaid_SCG3.md]]
30 30
31 31
## References
32 32
SCYL1.md
... ...
@@ -19,7 +19,7 @@ nocite: |
19 19
20 20
21 21
22
-[[include:mermaid_SCYL1.md]]
22
+[[include:tables/mermaid_SCYL1.md]]
23 23
24 24
## References
25 25
SDK2.md
... ...
@@ -19,7 +19,7 @@ nocite: |
19 19
20 20
21 21
22
-[[include:mermaid_SDK2.md]]
22
+[[include:tables/mermaid_SDK2.md]]
23 23
24 24
## References
25 25
SEC14L5.md
... ...
@@ -19,7 +19,7 @@ nocite: |
19 19
20 20
21 21
22
-[[include:mermaid_SEC14L5.md]]
22
+[[include:tables/mermaid_SEC14L5.md]]
23 23
24 24
## References
25 25
SEL1L3.md
... ...
@@ -37,6 +37,6 @@ nocite: |
37 37
![](images/gene_expression/SEL1L3_by_pathology.svg)
38 38
<!-- ORIGIN: Unknown -->
39 39
40
-[[include:mermaid_SEL1L3.md]]
40
+[[include:tables/mermaid_SEL1L3.md]]
41 41
42 42
## References
SEMA3A.md
... ...
@@ -19,7 +19,7 @@ nocite: |
19 19
20 20
21 21
22
-[[include:mermaid_SEMA3A.md]]
22
+[[include:tables/mermaid_SEMA3A.md]]
23 23
24 24
## References
25 25
SEMA3D.md
... ...
@@ -19,7 +19,7 @@ nocite: |
19 19
20 20
21 21
22
-[[include:mermaid_SEMA3D.md]]
22
+[[include:tables/mermaid_SEMA3D.md]]
23 23
24 24
## References
25 25
SEMA5A.md
... ...
@@ -19,7 +19,7 @@ nocite: |
19 19
20 20
21 21
22
-[[include:mermaid_SEMA5A.md]]
22
+[[include:tables/mermaid_SEMA5A.md]]
23 23
24 24
## References
25 25
SENP7.md
... ...
@@ -26,7 +26,7 @@ nocite: |
26 26
|DLBCL|GAMBL Genome |0.564 |
27 27
28 28
29
-[[include:mermaid_SENP7.md]]
29
+[[include:tables/mermaid_SENP7.md]]
30 30
31 31
## References
32 32
SERINC2.md
... ...
@@ -19,7 +19,7 @@ nocite: |
19 19
20 20
21 21
22
-[[include:mermaid_SERINC2.md]]
22
+[[include:tables/mermaid_SERINC2.md]]
23 23
24 24
## References
25 25
SERPINA1.md
... ...
@@ -19,7 +19,7 @@ nocite: |
19 19
20 20
21 21
22
-[[include:mermaid_SERPINA1.md]]
22
+[[include:tables/mermaid_SERPINA1.md]]
23 23
24 24
## References
25 25
SERPINA9.md
... ...
@@ -40,7 +40,7 @@ nocite: |
40 40
<!-- ORIGIN: arthurGenomewideDiscoverySomatic2018 -->
41 41
<!-- DLBCL: arthurGenomewideDiscoverySomatic2018 -->
42 42
43
-[[include:mermaid_SERPINA9.md]]
43
+[[include:tables/mermaid_SERPINA9.md]]
44 44
45 45
## References
46 46
SETD1B.md
... ...
@@ -120,7 +120,7 @@ Driver mutations affecting this gene in DLBCL have been experimentally demonstra
120 120
[Reddy_3998T](https://www.bcgsc.ca/downloads/morinlab/GAMBL/Reddy/igv_reports/Reddy_3998T.html)
121 121
[Reddy_790T](https://www.bcgsc.ca/downloads/morinlab/GAMBL/Reddy/igv_reports/Reddy_790T.html)
122 122
123
-[[include:mermaid_SETD1B.md]]
123
+[[include:tables/mermaid_SETD1B.md]]
124 124
125 125
## References
126 126
SETD2.md
... ...
@@ -39,7 +39,7 @@ Mutations in this gene were first described in DLBCL in 2013[@zhangGeneticHetero
39 39
<!-- ORIGIN: zhangGeneticHeterogeneityDiffuse2013 -->
40 40
<!-- DLBCL: zhangGeneticHeterogeneityDiffuse2013 -->
41 41
42
-[[include:mermaid_SETD2.md]]
42
+[[include:tables/mermaid_SETD2.md]]
43 43
44 44
## References
45 45
SETD5.md
... ...
@@ -101,6 +101,6 @@ Mutations in this gene were reported to be inflated in the original results acco
101 101
[Reddy_3995T](https://www.bcgsc.ca/downloads/morinlab/GAMBL/Reddy/igv_reports/Reddy_3995T.html)
102 102
[Reddy_695T](https://www.bcgsc.ca/downloads/morinlab/GAMBL/Reddy/igv_reports/Reddy_695T.html)
103 103
104
-[[include:mermaid_SETD5.md]]
104
+[[include:tables/mermaid_SETD5.md]]
105 105
106 106
## References
SETDB1.md
... ...
@@ -27,7 +27,7 @@ nocite: |
27 27
|FL|GAMBL Exome |0.287 |
28 28
29 29
30
-[[include:mermaid_SETDB1.md]]
30
+[[include:tables/mermaid_SETDB1.md]]
31 31
32 32
## References
33 33
SF3B1.md
... ...
@@ -57,7 +57,7 @@ Driver mutations affecting this gene in DLBCL have been experimentally demonstra
57 57
&starf; &starf; &starf; &starf; &star;
58 58
59 59
60
-[[include:mermaid_SF3B1.md]]
60
+[[include:tables/mermaid_SF3B1.md]]
61 61
62 62
## References
63 63
SH3PXD2B.md
... ...
@@ -19,7 +19,7 @@ nocite: |
19 19
20 20
21 21
22
-[[include:mermaid_SH3PXD2B.md]]
22
+[[include:tables/mermaid_SH3PXD2B.md]]
23 23
24 24
## References
25 25
SHANK1.md
... ...
@@ -44,7 +44,7 @@ nocite: |
44 44
**Rating**
45 45
&starf; &star; &star; &star; &star;
46 46
47
-[[include:mermaid_SHANK1.md]]
47
+[[include:tables/mermaid_SHANK1.md]]
48 48
49 49
## References
50 50
SHMT2.md
... ...
@@ -19,7 +19,7 @@ nocite: |
19 19
20 20
21 21
22
-[[include:mermaid_SHMT2.md]]
22
+[[include:tables/mermaid_SHMT2.md]]
23 23
24 24
## References
25 25
SHROOM3.md
... ...
@@ -32,7 +32,7 @@ nocite: |
32 32
<!-- ORIGIN: russler-germainMutationsAssociatedProgression2023a -->
33 33
<!-- FL: russler-germainMutationsAssociatedProgression2023b -->
34 34
35
-[[include:mermaid_SHROOM3.md]]
35
+[[include:tables/mermaid_SHROOM3.md]]
36 36
37 37
## References
38 38
SI.md
... ...
@@ -35,7 +35,7 @@ nocite: |
35 35
<!-- ORIGIN: zhangGenomicLandscapeMantle2014 -->
36 36
<!-- MCL: zhangGenomicLandscapeMantle2014 -->
37 37
38
-[[include:mermaid_SI.md]]
38
+[[include:tables/mermaid_SI.md]]
39 39
40 40
## References
41 41
SIAH2.md
... ...
@@ -43,6 +43,6 @@ nocite: |
43 43
[SP59304](https://www.bcgsc.ca/downloads/morinlab/GAMBL/MALY/SP59304.html)
44 44
[SP59416](https://www.bcgsc.ca/downloads/morinlab/GAMBL/MALY/SP59416.html)
45 45
46
-[[include:mermaid_SIAH2.md]]
46
+[[include:tables/mermaid_SIAH2.md]]
47 47
48 48
## References
SIGLEC10.md
... ...
@@ -19,7 +19,7 @@ nocite: |
19 19
20 20
21 21
22
-[[include:mermaid_SIGLEC10.md]]
22
+[[include:tables/mermaid_SIGLEC10.md]]
23 23
24 24
## References
25 25
SIN3A.md
... ...
@@ -30,7 +30,7 @@ nocite: |
30 30
## Expression
31 31
![](images/gene_expression/SIN3A_by_pathology.svg)
32 32
33
-[[include:mermaid_SIN3A.md]]
33
+[[include:tables/mermaid_SIN3A.md]]
34 34
35 35
## References
36 36
SLC16A7.md
... ...
@@ -19,7 +19,7 @@ nocite: |
19 19
20 20
21 21
22
-[[include:mermaid_SLC16A7.md]]
22
+[[include:tables/mermaid_SLC16A7.md]]
23 23
24 24
## References
25 25
SLC16A8.md
... ...
@@ -19,7 +19,7 @@ nocite: |
19 19
20 20
21 21
22
-[[include:mermaid_SLC16A8.md]]
22
+[[include:tables/mermaid_SLC16A8.md]]
23 23
24 24
## References
25 25
SLC17A6.md
... ...
@@ -27,7 +27,7 @@ nocite: |
27 27
|MCL|GAMBL Genome |0.585 |
28 28
29 29
30
-[[include:mermaid_SLC17A6.md]]
30
+[[include:tables/mermaid_SLC17A6.md]]
31 31
32 32
## References
33 33
SLC29A2.md
... ...
@@ -47,7 +47,7 @@ nocite: |
47 47
48 48
49 49
50
-[[include:mermaid_SLC29A2.md]]
50
+[[include:tables/mermaid_SLC29A2.md]]
51 51
52 52
## References
53 53
SLC34A2.md
... ...
@@ -40,7 +40,7 @@ nocite: |
40 40
[SP193312](https://www.bcgsc.ca/downloads/morinlab/GAMBL/MALY/SP193312.html)
41 41
[SP194108](https://www.bcgsc.ca/downloads/morinlab/GAMBL/MALY/SP194108.html)
42 42
43
-[[include:mermaid_SLC34A2.md]]
43
+[[include:tables/mermaid_SLC34A2.md]]
44 44
45 45
## References
46 46
SLC38A8.md
... ...
@@ -27,7 +27,7 @@ nocite: |
27 27
|FL|GAMBL Exome |0.287 |
28 28
29 29
30
-[[include:mermaid_SLC38A8.md]]
30
+[[include:tables/mermaid_SLC38A8.md]]
31 31
32 32
## References
33 33
SLC4A8.md
... ...
@@ -19,7 +19,7 @@ nocite: |
19 19
20 20
21 21
22
-[[include:mermaid_SLC4A8.md]]
22
+[[include:tables/mermaid_SLC4A8.md]]
23 23
24 24
## References
25 25
SLC5A1.md
... ...
@@ -19,7 +19,7 @@ nocite: |
19 19
20 20
21 21
22
-[[include:mermaid_SLC5A1.md]]
22
+[[include:tables/mermaid_SLC5A1.md]]
23 23
24 24
## References
25 25
SLC9A5.md
... ...
@@ -19,7 +19,7 @@ nocite: |
19 19
20 20
21 21
22
-[[include:mermaid_SLC9A5.md]]
22
+[[include:tables/mermaid_SLC9A5.md]]
23 23
24 24
## References
25 25
SLITRK6.md
... ...
@@ -27,7 +27,7 @@ nocite: |
27 27
|FL|GAMBL Exome |2.865 |
28 28
29 29
30
-[[include:mermaid_SLITRK6.md]]
30
+[[include:tables/mermaid_SLITRK6.md]]
31 31
32 32
## References
33 33
SMARCA1.md
... ...
@@ -19,7 +19,7 @@ nocite: |
19 19
20 20
21 21
22
-[[include:mermaid_SMARCA1.md]]
22
+[[include:tables/mermaid_SMARCA1.md]]
23 23
24 24
## References
25 25
SMARCA4.md
... ...
@@ -47,6 +47,6 @@ Driver mutations affecting this gene in DLBCL/FL/BL have been experimentally dem
47 47
<!-- FL: krysiakRecurrentSomaticMutations2017b -->
48 48
<!-- BL: richterRecurrentMutationID32012a -->
49 49
50
-[[include:mermaid_SMARCA4.md]]
50
+[[include:tables/mermaid_SMARCA4.md]]
51 51
52 52
## References
SMARCB1.md
... ...
@@ -36,7 +36,7 @@ nocite: |
36 36
<!-- ORIGIN: nadeuGenomicEpigenomicInsights2020a -->
37 37
<!-- MCL: nadeuGenomicEpigenomicInsights2020b -->
38 38
39
-[[include:mermaid_SMARCB1.md]]
39
+[[include:tables/mermaid_SMARCB1.md]]
40 40
41 41
## References
42 42
SMC1A.md
... ...
@@ -35,6 +35,6 @@ nocite: |
35 35
<!-- ORIGIN: zhangGenomicLandscapeMantle2014 -->
36 36
<!-- MCL: zhangGenomicLandscapeMantle2014 -->
37 37
38
-[[include:mermaid_SMC1A.md]]
38
+[[include:tables/mermaid_SMC1A.md]]
39 39
40 40
## References
SMEK1.md
... ...
@@ -37,7 +37,7 @@ nocite: |
37 37
<!-- ORIGIN: chapuyMolecularSubtypesDiffuse2018b -->
38 38
<!-- DLBCL: chapuyMolecularSubtypesDiffuse2018b -->
39 39
40
-[[include:mermaid_SMEK1.md]]
40
+[[include:tables/mermaid_SMEK1.md]]
41 41
42 42
## References
43 43
SMO.md
... ...
@@ -19,7 +19,7 @@ nocite: |
19 19
20 20
21 21
22
-[[include:mermaid_SMO.md]]
22
+[[include:tables/mermaid_SMO.md]]
23 23
24 24
## References
25 25
SNTB2.md
... ...
@@ -51,6 +51,6 @@ nocite: |
51 51
&starf; &starf; &starf; &starf; &star;
52 52
53 53
54
-[[include:mermaid_SNTB2.md]]
54
+[[include:tables/mermaid_SNTB2.md]]
55 55
56 56
## References
SOCS1.md
... ...
@@ -43,6 +43,6 @@ Driver mutations affecting this gene in FL/DLBCL have been experimentally demons
43 43
<!-- PMBL: wenigerMutationsTumorSuppressor2006a -->
44 44
<!-- DLBCL: morinFrequentMutationHistonemodifying2011 -->
45 45
46
-[[include:mermaid_SOCS1.md]]
46
+[[include:tables/mermaid_SOCS1.md]]
47 47
48 48
## References
SOS2.md
... ...
@@ -19,7 +19,7 @@ nocite: |
19 19
20 20
21 21
22
-[[include:mermaid_SOS2.md]]
22
+[[include:tables/mermaid_SOS2.md]]
23 23
24 24
## References
25 25
SOX6.md
... ...
@@ -19,7 +19,7 @@ nocite: |
19 19
20 20
21 21
22
-[[include:mermaid_SOX6.md]]
22
+[[include:tables/mermaid_SOX6.md]]
23 23
24 24
## References
25 25
SP140.md
... ...
@@ -36,7 +36,7 @@ nocite: |
36 36
<!-- ORIGIN: beaLandscapeSomaticMutations2013 -->
37 37
<!-- MCL: beaLandscapeSomaticMutations2013 -->
38 38
39
-[[include:mermaid_SP140.md]]
39
+[[include:tables/mermaid_SP140.md]]
40 40
41 41
## References
42 42
SPEG.md
... ...
@@ -19,7 +19,7 @@ nocite: |
19 19
20 20
21 21
22
-[[include:mermaid_SPEG.md]]
22
+[[include:tables/mermaid_SPEG.md]]
23 23
24 24
## References
25 25
SPEN.md
... ...
@@ -38,7 +38,7 @@ nocite: |
38 38
<!-- MZL: rossiCodingGenomeSplenic2012c -->
39 39
<!-- PMBL: sarkozyMutationalLandscapeGray2021a -->
40 40
41
-[[include:mermaid_SPEN.md]]
41
+[[include:tables/mermaid_SPEN.md]]
42 42
43 43
## References
44 44
SPTBN1.md
... ...
@@ -19,7 +19,7 @@ nocite: |
19 19
20 20
21 21
22
-[[include:mermaid_SPTBN1.md]]
22
+[[include:tables/mermaid_SPTBN1.md]]
23 23
24 24
## References
25 25
SRPX.md
... ...
@@ -27,7 +27,7 @@ nocite: |
27 27
|FL|GAMBL Exome |0.287 |
28 28
29 29
30
-[[include:mermaid_SRPX.md]]
30
+[[include:tables/mermaid_SRPX.md]]
31 31
32 32
## References
33 33
SRRM2.md
... ...
@@ -40,7 +40,7 @@ nocite: |
40 40
41 41
[RG043](https://www.bcgsc.ca/downloads/morinlab/GAMBL/Morin_2013/RG043.html)
42 42
43
-[[include:mermaid_SRRM2.md]]
43
+[[include:tables/mermaid_SRRM2.md]]
44 44
45 45
## References
46 46
ST6GAL1.md
... ...
@@ -42,7 +42,7 @@ nocite: |
42 42
<!-- ORIGIN: arthurGenomewideDiscoverySomatic2018 -->
43 43
<!-- DLBCL: arthurGenomewideDiscoverySomatic2018 -->
44 44
45
-[[include:mermaid_ST6GAL1.md]]
45
+[[include:tables/mermaid_ST6GAL1.md]]
46 46
47 47
## References
48 48
ST8SIA3.md
... ...
@@ -19,7 +19,7 @@ nocite: |
19 19
20 20
21 21
22
-[[include:mermaid_ST8SIA3.md]]
22
+[[include:tables/mermaid_ST8SIA3.md]]
23 23
24 24
## References
25 25
STAB2.md
... ...
@@ -31,6 +31,6 @@ nocite: |
31 31
<!-- ORIGIN: russler-germainMutationsAssociatedProgression2023a -->
32 32
<!-- FL: russler-germainMutationsAssociatedProgression2023b -->
33 33
34
-[[include:mermaid_STAB2.md]]
34
+[[include:tables/mermaid_STAB2.md]]
35 35
36 36
## References
STAT3.md
... ...
@@ -43,7 +43,7 @@ Driver mutations affecting this gene in DLBCL have been experimentally demonstra
43 43
<!-- ORIGIN: ohgamiSTAT3MutationsAre2014 -->
44 44
<!-- DLBCL: ohgamiSTAT3MutationsAre2014 -->
45 45
46
-[[include:mermaid_STAT3.md]]
46
+[[include:tables/mermaid_STAT3.md]]
47 47
48 48
## References
49 49
STAT5B.md
... ...
@@ -40,6 +40,6 @@ Mutations in this gene were first described in DLBCL in 2013[@zhangGeneticHetero
40 40
<!-- PMBL: tiacciPervasiveMutationsJAKSTAT2018b -->
41 41
<!-- DLBCL: zhangGeneticHeterogeneityDiffuse2013 -->
42 42
43
-[[include:mermaid_STAT5B.md]]
43
+[[include:tables/mermaid_STAT5B.md]]
44 44
45 45
## References
STAT6.md
... ...
@@ -61,7 +61,7 @@ Recurrent mutations at the D419 amino acid residue are a common feature in DLBCL
61 61
<!-- FL: yildizActivatingSTAT6Mutations2015c -->
62 62
<!-- DLBCL: yildizActivatingSTAT6Mutations2015c -->
63 63
64
-[[include:mermaid_STAT6.md]]
64
+[[include:tables/mermaid_STAT6.md]]
65 65
66 66
## References
67 67
STXBP5.md
... ...
@@ -26,7 +26,7 @@ nocite: |
26 26
|DLBCL|GAMBL Genome |1.504 |
27 27
28 28
29
-[[include:mermaid_STXBP5.md]]
29
+[[include:tables/mermaid_STXBP5.md]]
30 30
31 31
## References
32 32
SULF2.md
... ...
@@ -19,7 +19,7 @@ nocite: |
19 19
20 20
21 21
22
-[[include:mermaid_SULF2.md]]
22
+[[include:tables/mermaid_SULF2.md]]
23 23
24 24
## References
25 25
SWAP70.md
... ...
@@ -27,7 +27,7 @@ nocite: |
27 27
|FL|GAMBL Exome |0.86 |
28 28
29 29
30
-[[include:mermaid_SWAP70.md]]
30
+[[include:tables/mermaid_SWAP70.md]]
31 31
32 32
## References
33 33
SYK.md
... ...
@@ -55,7 +55,7 @@ nocite: |
55 55
[Reddy_3698T](https://www.bcgsc.ca/downloads/morinlab/GAMBL/Reddy/igv_reports/Reddy_3698T.html)
56 56
[Reddy_683T](https://www.bcgsc.ca/downloads/morinlab/GAMBL/Reddy/igv_reports/Reddy_683T.html)
57 57
58
-[[include:mermaid_SYK.md]]
58
+[[include:tables/mermaid_SYK.md]]
59 59
60 60
## References
61 61
SYN2.md
... ...
@@ -24,7 +24,7 @@ nocite: |
24 24
|FL|GAMBL Exome |0.287 |
25 25
26 26
27
-[[include:mermaid_SYN2.md]]
27
+[[include:tables/mermaid_SYN2.md]]
28 28
29 29
## References
30 30
SYNE1.md
... ...
@@ -36,7 +36,7 @@ nocite: |
36 36
<!-- ORIGIN: nadeuGenomicEpigenomicInsights2020a -->
37 37
<!-- MCL: nadeuGenomicEpigenomicInsights2020b -->
38 38
39
-[[include:mermaid_SYNE1.md]]
39
+[[include:tables/mermaid_SYNE1.md]]
40 40
41 41
## References
42 42
SYNGAP1.md
... ...
@@ -48,7 +48,7 @@ Due to [minimal support](SYNGAP1#representative-mutation) in the original primar
48 48
&starf; &star; &star; &star; &star;
49 49
50 50
51
-[[include:mermaid_SYNGAP1.md]]
51
+[[include:tables/mermaid_SYNGAP1.md]]
52 52
53 53
## References
54 54
SYPL1.md
... ...
@@ -39,7 +39,7 @@ nocite: |
39 39
[RG054](https://www.bcgsc.ca/downloads/morinlab/GAMBL/Morin_2013/RG054.html)
40 40
[RG082](https://www.bcgsc.ca/downloads/morinlab/GAMBL/Morin_2013/RG082.html)
41 41
42
-[[include:mermaid_SYPL1.md]]
42
+[[include:tables/mermaid_SYPL1.md]]
43 43
44 44
## References
45 45
TAF1.md
... ...
@@ -30,6 +30,6 @@ nocite: |
30 30
<!-- MZL: spinaGeneticsNodalMarginal2016b -->
31 31
<!-- DLBCL: morinMutationalStructuralAnalysis2013 -->
32 32
33
-[[include:mermaid_TAF1.md]]
33
+[[include:tables/mermaid_TAF1.md]]
34 34
35 35
## References
TAF1L.md
... ...
@@ -19,7 +19,7 @@ nocite: |
19 19
20 20
21 21
22
-[[include:mermaid_TAF1L.md]]
22
+[[include:tables/mermaid_TAF1L.md]]
23 23
24 24
## References
25 25
TAF4B.md
... ...
@@ -19,7 +19,7 @@ nocite: |
19 19
20 20
21 21
22
-[[include:mermaid_TAF4B.md]]
22
+[[include:tables/mermaid_TAF4B.md]]
23 23
24 24
## References
25 25
TAP1.md
... ...
@@ -32,7 +32,7 @@ nocite: |
32 32
<!-- ORIGIN: schmitzGeneticsPathogenesisDiffuse2018a -->
33 33
<!-- DLBCL: schmitzGeneticsPathogenesisDiffuse2018a -->
34 34
35
-[[include:mermaid_TAP1.md]]
35
+[[include:tables/mermaid_TAP1.md]]
36 36
37 37
## References
38 38
TBC1D15.md
... ...
@@ -24,7 +24,7 @@ nocite: |
24 24
|DLBCL|GAMBL Exome |0.809 |
25 25
26 26
27
-[[include:mermaid_TBC1D15.md]]
27
+[[include:tables/mermaid_TBC1D15.md]]
28 28
29 29
## References
30 30
TBC1D26.md
... ...
@@ -36,7 +36,7 @@ nocite: |
36 36
<!-- ORIGIN: zhangGenomicLandscapeMantle2014 -->
37 37
<!-- MCL: zhangGenomicLandscapeMantle2014 -->
38 38
39
-[[include:mermaid_TBC1D26.md]]
39
+[[include:tables/mermaid_TBC1D26.md]]
40 40
41 41
## References
42 42
TBC1D3F.md
... ...
@@ -19,7 +19,7 @@ nocite: |
19 19
20 20
21 21
22
-[[include:mermaid_TBC1D3F.md]]
22
+[[include:tables/mermaid_TBC1D3F.md]]
23 23
24 24
## References
25 25
TBC1D9B.md
... ...
@@ -45,7 +45,7 @@ nocite: |
45 45
46 46
47 47
48
-[[include:mermaid_TBC1D9B.md]]
48
+[[include:tables/mermaid_TBC1D9B.md]]
49 49
50 50
## References
51 51
TBK1.md
... ...
@@ -28,7 +28,7 @@ nocite: |
28 28
|MCL|GAMBL Genome |1.17 |
29 29
30 30
31
-[[include:mermaid_TBK1.md]]
31
+[[include:tables/mermaid_TBK1.md]]
32 32
33 33
## References
34 34
TBL1XR1.md
... ...
@@ -49,7 +49,7 @@ Driver mutations affecting this gene in FL/DLBCL have been experimentally demons
49 49
<!-- MZL: rossiCodingGenomeSplenic2012c -->
50 50
<!-- DLBCL: mareschalWholeExomeSequencing2016 -->
51 51
52
-[[include:mermaid_TBL1XR1.md]]
52
+[[include:tables/mermaid_TBL1XR1.md]]
53 53
54 54
## References
55 55
TBP.md
... ...
@@ -19,7 +19,7 @@ nocite: |
19 19
20 20
21 21
22
-[[include:mermaid_TBP.md]]
22
+[[include:tables/mermaid_TBP.md]]
23 23
24 24
## References
25 25
TCF3.md
... ...
@@ -49,6 +49,6 @@ Driver mutations affecting this gene in BL have been experimentally demonstrated
49 49
<!-- ORIGIN: schmitzBurkittLymphomaPathogenesis2012 -->
50 50
<!-- BL: schmitzBurkittLymphomaPathogenesis2012 -->
51 51
52
-[[include:mermaid_TCF3.md]]
52
+[[include:tables/mermaid_TCF3.md]]
53 53
54 54
# References
TCL1A.md
... ...
@@ -38,7 +38,7 @@ nocite: |
38 38
## Expression
39 39
![](images/gene_expression/TCL1A_by_pathology.svg)
40 40
41
-[[include:mermaid_TCL1A.md]]
41
+[[include:tables/mermaid_TCL1A.md]]
42 42
43 43
## References
44 44
TCTN2.md
... ...
@@ -27,7 +27,7 @@ nocite: |
27 27
|MCL|GAMBL Genome |0.585 |
28 28
29 29
30
-[[include:mermaid_TCTN2.md]]
30
+[[include:tables/mermaid_TCTN2.md]]
31 31
32 32
## References
33 33
TECRL.md
... ...
@@ -19,7 +19,7 @@ nocite: |
19 19
20 20
21 21
22
-[[include:mermaid_TECRL.md]]
22
+[[include:tables/mermaid_TECRL.md]]
23 23
24 24
## References
25 25
TERT.md
... ...
@@ -36,7 +36,7 @@ nocite: |
36 36
<!-- ORIGIN: nadeuGenomicEpigenomicInsights2020a -->
37 37
<!-- MCL: nadeuGenomicEpigenomicInsights2020b -->
38 38
39
-[[include:mermaid_TERT.md]]
39
+[[include:tables/mermaid_TERT.md]]
40 40
41 41
## References
42 42
TET2.md
... ...
@@ -33,7 +33,7 @@ Driver mutations affecting this gene in DLBCL have been experimentally demonstra
33 33
<!-- ORIGIN: 28327945 -->
34 34
<!-- DLBCL: albuquerqueEnhancingKnowledgeDiscovery2017a -->
35 35
36
-[[include:mermaid_TET2.md]]
36
+[[include:tables/mermaid_TET2.md]]
37 37
38 38
## References
39 39
TFAP4.md
... ...
@@ -37,7 +37,7 @@ Driver mutations affecting this gene in BL have been experimentally demonstrated
37 37
## Expression
38 38
![](images/gene_expression/TFAP4_by_pathology.svg)
39 39
40
-[[include:mermaid_TFAP4.md]]
40
+[[include:tables/mermaid_TFAP4.md]]
41 41
42 42
## References
43 43
TGFBR2.md
... ...
@@ -35,7 +35,7 @@ nocite: |
35 35
<!-- ORIGIN: reddyGeneticFunctionalDrivers2017 -->
36 36
<!-- DLBCL: reddyGeneticFunctionalDrivers2017 -->
37 37
38
-[[include:mermaid_TGFBR2.md]]
38
+[[include:tables/mermaid_TGFBR2.md]]
39 39
40 40
## References
41 41
THBS4.md
... ...
@@ -19,7 +19,7 @@ nocite: |
19 19
20 20
21 21
22
-[[include:mermaid_THBS4.md]]
22
+[[include:tables/mermaid_THBS4.md]]
23 23
24 24
## References
25 25
TICRR.md
... ...
@@ -27,7 +27,7 @@ nocite: |
27 27
|MCL|GAMBL Genome |0.585 |
28 28
29 29
30
-[[include:mermaid_TICRR.md]]
30
+[[include:tables/mermaid_TICRR.md]]
31 31
32 32
## References
33 33
TIGD6.md
... ...
@@ -46,7 +46,7 @@ nocite: |
46 46
47 47
48 48
49
-[[include:mermaid_TIGD6.md]]
49
+[[include:tables/mermaid_TIGD6.md]]
50 50
51 51
## References
52 52
TIMM50.md
... ...
@@ -19,7 +19,7 @@ nocite: |
19 19
20 20
21 21
22
-[[include:mermaid_TIMM50.md]]
22
+[[include:tables/mermaid_TIMM50.md]]
23 23
24 24
## References
25 25
TIPARP.md
... ...
@@ -35,7 +35,7 @@ nocite: |
35 35
<!-- ORIGIN: reddyGeneticFunctionalDrivers2017 -->
36 36
<!-- DLBCL: reddyGeneticFunctionalDrivers2017 -->
37 37
38
-[[include:mermaid_TIPARP.md]]
38
+[[include:tables/mermaid_TIPARP.md]]
39 39
40 40
## References
41 41
TLL2.md
... ...
@@ -19,7 +19,7 @@ nocite: |
19 19
20 20
21 21
22
-[[include:mermaid_TLL2.md]]
22
+[[include:tables/mermaid_TLL2.md]]
23 23
24 24
## References
25 25
TLN1.md
... ...
@@ -19,7 +19,7 @@ nocite: |
19 19
20 20
21 21
22
-[[include:mermaid_TLN1.md]]
22
+[[include:tables/mermaid_TLN1.md]]
23 23
24 24
## References
25 25
TLN2.md
... ...
@@ -19,7 +19,7 @@ nocite: |
19 19
20 20
21 21
22
-[[include:mermaid_TLN2.md]]
22
+[[include:tables/mermaid_TLN2.md]]
23 23
24 24
## References
25 25
TLR2.md
... ...
@@ -46,7 +46,7 @@ nocite: |
46 46
[DLBCL-RICOVER_1269-Tumor](https://bcgsc.ca/downloads/morinlab/GAMBL/Chapuy_2018/DLBCL-RICOVER_1269-Tumor.html)
47 47
[DLBCL-RICOVER_174-Tumor](https://bcgsc.ca/downloads/morinlab/GAMBL/Chapuy_2018/DLBCL-RICOVER_174-Tumor.html)
48 48
49
-[[include:mermaid_TLR2.md]]
49
+[[include:tables/mermaid_TLR2.md]]
50 50
51 51
## References
52 52
TLR4.md
... ...
@@ -19,7 +19,7 @@ nocite: |
19 19
20 20
21 21
22
-[[include:mermaid_TLR4.md]]
22
+[[include:tables/mermaid_TLR4.md]]
23 23
24 24
## References
25 25
TMC1.md
... ...
@@ -19,7 +19,7 @@ nocite: |
19 19
20 20
21 21
22
-[[include:mermaid_TMC1.md]]
22
+[[include:tables/mermaid_TMC1.md]]
23 23
24 24
## References
25 25
TMEM161A.md
... ...
@@ -19,7 +19,7 @@ nocite: |
19 19
20 20
21 21
22
-[[include:mermaid_TMEM161A.md]]
22
+[[include:tables/mermaid_TMEM161A.md]]
23 23
24 24
## References
25 25
TMEM16E.md
... ...
@@ -19,7 +19,7 @@ nocite: |
19 19
20 20
21 21
22
-[[include:mermaid_TMEM16E.md]]
22
+[[include:tables/mermaid_TMEM16E.md]]
23 23
24 24
## References
25 25
TMEM30A.md
... ...
@@ -44,6 +44,6 @@ Driver mutations affecting this gene in DLBCL have been experimentally demonstra
44 44
<!-- ORIGIN: morinFrequentMutationHistonemodifying2011 -->
45 45
<!-- DLBCL: morinFrequentMutationHistonemodifying2011 -->
46 46
<!-- FL: morinFrequentMutationHistonemodifying2011 -->
47
-[[include:mermaid_TMEM30A.md]]
47
+[[include:tables/mermaid_TMEM30A.md]]
48 48
49 49
## References
TMEM63A.md
... ...
@@ -19,7 +19,7 @@ nocite: |
19 19
20 20
21 21
22
-[[include:mermaid_TMEM63A.md]]
22
+[[include:tables/mermaid_TMEM63A.md]]
23 23
24 24
## References
25 25
TMSB4X.md
... ...
@@ -43,7 +43,7 @@ TMSB4X is one of [a number of genes](https://github.com/morinlab/LLMPP/wiki/ashm
43 43
<!-- ORIGIN: albuquerqueEnhancingKnowledgeDiscovery2017a -->
44 44
<!-- DLBCL: albuquerqueEnhancingKnowledgeDiscovery2017a -->
45 45
46
-[[include:mermaid_TMSB4X.md]]
46
+[[include:tables/mermaid_TMSB4X.md]]
47 47
48 48
## References
49 49
TMSL3.md
... ...
@@ -22,7 +22,7 @@ nocite: |
22 22
|:------:|:----:|:----:|
23 23
24 24
25
-[[include:mermaid_TMSL3.md]]
25
+[[include:tables/mermaid_TMSL3.md]]
26 26
27 27
## References
28 28
TNF.md
... ...
@@ -22,7 +22,7 @@ nocite: |
22 22
[[include:tables/DLBCL_TNF.md]]
23 23
[[include:tables/FL_TNF.md]]
24 24
25
-[[include:mermaid_TNF.md]]
25
+[[include:tables/mermaid_TNF.md]]
26 26
27 27
## References
28 28
TNFAIP3.md
... ...
@@ -42,7 +42,7 @@ Driver mutations affecting this gene in FL/DLBCL have been experimentally demons
42 42
43 43
![](images/gene_expression/TNFAIP3_by_pathology.svg)
44 44
45
-[[include:mermaid_TNFAIP3.md]]
45
+[[include:tables/mermaid_TNFAIP3.md]]
46 46
47 47
## References
48 48
<!-- ORIGIN: rossiAlterationBIRC3Multiple2011a -->
TNFRSF14.md
... ...
@@ -58,7 +58,7 @@ Driver mutations affecting this gene in DLBCL have been experimentally demonstra
58 58
<!-- MZL: spinaGeneticsNodalMarginal2016b @spinaGeneticsNodalMarginal2016b -->
59 59
<!-- DLBCL: morinFrequentMutationHistonemodifying2011 -->
60 60
61
-[[include:mermaid_TNFRSF14.md]]
61
+[[include:tables/mermaid_TNFRSF14.md]]
62 62
63 63
# References
64 64
TNIP1.md
... ...
@@ -27,7 +27,7 @@ nocite: |
27 27
|FL|GAMBL Exome |0.287 |
28 28
29 29
30
-[[include:mermaid_TNIP1.md]]
30
+[[include:tables/mermaid_TNIP1.md]]
31 31
32 32
## References
33 33
TNIP2.md
... ...
@@ -24,7 +24,7 @@ nocite: |
24 24
|DLBCL|GAMBL Exome |0.593 |
25 25
26 26
27
-[[include:mermaid_TNIP2.md]]
27
+[[include:tables/mermaid_TNIP2.md]]
28 28
29 29
## References
30 30
TNPO1.md
... ...
@@ -19,7 +19,7 @@ nocite: |
19 19
20 20
21 21
22
-[[include:mermaid_TNPO1.md]]
22
+[[include:tables/mermaid_TNPO1.md]]
23 23
24 24
## References
25 25
TNRC6B.md
... ...
@@ -28,7 +28,7 @@ nocite: |
28 28
|MCL|GAMBL Genome |0.585 |
29 29
30 30
31
-[[include:mermaid_TNRC6B.md]]
31
+[[include:tables/mermaid_TNRC6B.md]]
32 32
33 33
## References
34 34
TOP2A.md
... ...
@@ -34,7 +34,7 @@ nocite: |
34 34
<!-- ORIGIN: schmitzBurkittLymphomaPathogenesis2012 -->
35 35
<!-- BL: schmitzBurkittLymphomaPathogenesis2012 -->
36 36
37
-[[include:mermaid_TOP2A.md]]
37
+[[include:tables/mermaid_TOP2A.md]]
38 38
39 39
## References
40 40
TOX.md
... ...
@@ -36,6 +36,6 @@ nocite: |
36 36
<!-- ORIGIN: reddyGeneticFunctionalDrivers2017 -->
37 37
<!-- DLBCL: reddyGeneticFunctionalDrivers2017 -->
38 38
39
-[[include:mermaid_TOX.md]]
39
+[[include:tables/mermaid_TOX.md]]
40 40
41 41
## References
TP53.md
... ...
@@ -46,6 +46,6 @@ Driver mutations affecting this gene in BL/FL/DLBCL have been experimentally dem
46 46
<!-- MZL: rossiCodingGenomeSplenic2012c -->
47 47
<!-- PMBL: tiacciPervasiveMutationsJAKSTAT2018b -->
48 48
49
-[[include:mermaid_TP53.md]]
49
+[[include:tables/mermaid_TP53.md]]
50 50
51 51
## References
TPP1.md
... ...
@@ -40,7 +40,7 @@ nocite: |
40 40
[SP194043](https://www.bcgsc.ca/downloads/morinlab/GAMBL/MALY/SP194043.html)
41 41
[SP59416](https://www.bcgsc.ca/downloads/morinlab/GAMBL/MALY/SP59416.html)
42 42
43
-[[include:mermaid_TPP1.md]]
43
+[[include:tables/mermaid_TPP1.md]]
44 44
45 45
## References
46 46
TPR.md
... ...
@@ -19,7 +19,7 @@ nocite: |
19 19
20 20
21 21
22
-[[include:mermaid_TPR.md]]
22
+[[include:tables/mermaid_TPR.md]]
23 23
24 24
## References
25 25
TPRKB.md
... ...
@@ -19,7 +19,7 @@ nocite: |
19 19
20 20
21 21
22
-[[include:mermaid_TPRKB.md]]
22
+[[include:tables/mermaid_TPRKB.md]]
23 23
24 24
## References
25 25
TPST2.md
... ...
@@ -47,7 +47,7 @@ nocite: |
47 47
&star; &star; &star; &star; &star;
48 48
49 49
50
-[[include:mermaid_TPST2.md]]
50
+[[include:tables/mermaid_TPST2.md]]
51 51
52 52
## References
53 53
TRAF3.md
... ...
@@ -36,6 +36,6 @@ nocite: |
36 36
<!-- DLBCL: pasqualucciAnalysisCodingGenome2011 -->
37 37
<!-- PMBL: ottoGeneticLesionsTRAF32012a -->
38 38
39
-[[include:mermaid_TRAF3.md]]
39
+[[include:tables/mermaid_TRAF3.md]]
40 40
41 41
## References
TRAF6.md
... ...
@@ -49,6 +49,6 @@ nocite: |
49 49
[SP193312](https://www.bcgsc.ca/downloads/morinlab/GAMBL/MALY/SP193312.html)
50 50
[SP59456](https://www.bcgsc.ca/downloads/morinlab/GAMBL/MALY/SP59456.html)
51 51
52
-[[include:mermaid_TRAF6.md]]
52
+[[include:tables/mermaid_TRAF6.md]]
53 53
54 54
## References
TRIM2.md
... ...
@@ -19,7 +19,7 @@ nocite: |
19 19
20 20
21 21
22
-[[include:mermaid_TRIM2.md]]
22
+[[include:tables/mermaid_TRIM2.md]]
23 23
24 24
## References
25 25
TRIM37.md
... ...
@@ -19,7 +19,7 @@ nocite: |
19 19
20 20
21 21
22
-[[include:mermaid_TRIM37.md]]
22
+[[include:tables/mermaid_TRIM37.md]]
23 23
24 24
## References
25 25
TRIP11.md
... ...
@@ -27,7 +27,7 @@ nocite: |
27 27
|FL|GAMBL Exome |0.573 |
28 28
29 29
30
-[[include:mermaid_TRIP11.md]]
30
+[[include:tables/mermaid_TRIP11.md]]
31 31
32 32
## References
33 33
TRPM6.md
... ...
@@ -28,7 +28,7 @@ nocite: |
28 28
|MCL|GAMBL Genome |2.924 |
29 29
30 30
31
-[[include:mermaid_TRPM6.md]]
31
+[[include:tables/mermaid_TRPM6.md]]
32 32
33 33
## References
34 34
TRRAP.md
... ...
@@ -42,6 +42,6 @@ nocite: |
42 42
<!-- DLBCL: parryWholeExomeSequencing2013 -->
43 43
<!-- MZL: rossiCodingGenomeSplenic2012c -->
44 44
45
-[[include:mermaid_TRRAP.md]]
45
+[[include:tables/mermaid_TRRAP.md]]
46 46
47 47
## References
TSC2.md
... ...
@@ -19,7 +19,7 @@ nocite: |
19 19
20 20
21 21
22
-[[include:mermaid_TSC2.md]]
22
+[[include:tables/mermaid_TSC2.md]]
23 23
24 24
## References
25 25
TSC22D1.md
... ...
@@ -19,7 +19,7 @@ nocite: |
19 19
20 20
21 21
22
-[[include:mermaid_TSC22D1.md]]
22
+[[include:tables/mermaid_TSC22D1.md]]
23 23
24 24
## References
25 25
TSHZ2.md
... ...
@@ -19,7 +19,7 @@ nocite: |
19 19
20 20
21 21
22
-[[include:mermaid_TSHZ2.md]]
22
+[[include:tables/mermaid_TSHZ2.md]]
23 23
24 24
## References
25 25
TTN.md
... ...
@@ -38,6 +38,6 @@ nocite: |
38 38
<!-- ORIGIN: burkhardtClinicalRelevanceMolecular2022b -->
39 39
<!-- BL: burkhardtClinicalRelevanceMolecular2022b -->
40 40
41
-[[include:mermaid_TTN.md]]
41
+[[include:tables/mermaid_TTN.md]]
42 42
43 43
## References
TYRO3.md
... ...
@@ -19,7 +19,7 @@ nocite: |
19 19
20 20
21 21
22
-[[include:mermaid_TYRO3.md]]
22
+[[include:tables/mermaid_TYRO3.md]]
23 23
24 24
## References
25 25
UBE2A.md
... ...
@@ -29,7 +29,7 @@ nocite: |
29 29
<!-- DLBCL: reddyGeneticFunctionalDrivers2017 -->
30 30
<!-- PMBL: reichelFlowSortingExome2015a -->
31 31
32
-[[include:mermaid_UBE2A.md]]
32
+[[include:tables/mermaid_UBE2A.md]]
33 33
34 34
## References
35 35
UBR5.md
... ...
@@ -42,7 +42,7 @@ Mutations in this gene were first described in DLBCL in 2013[@zhangGeneticHetero
42 42
<!-- DLBCL: zhangGeneticHeterogeneityDiffuse2013 -->
43 43
<!-- MCL: pararajalingamCodingNoncodingDrivers2020 -->
44 44
45
-[[include:mermaid_UBR5.md]]
45
+[[include:tables/mermaid_UBR5.md]]
46 46
47 47
## References
48 48
UBXN11.md
... ...
@@ -19,7 +19,7 @@ nocite: |
19 19
20 20
21 21
22
-[[include:mermaid_UBXN11.md]]
22
+[[include:tables/mermaid_UBXN11.md]]
23 23
24 24
## References
25 25
UBXN2B.md
... ...
@@ -19,7 +19,7 @@ nocite: |
19 19
20 20
21 21
22
-[[include:mermaid_UBXN2B.md]]
22
+[[include:tables/mermaid_UBXN2B.md]]
23 23
24 24
## References
25 25
UHRF1BP1.md
... ...
@@ -19,7 +19,7 @@ nocite: |
19 19
20 20
21 21
22
-[[include:mermaid_UHRF1BP1.md]]
22
+[[include:tables/mermaid_UHRF1BP1.md]]
23 23
24 24
## References
25 25
UHRF1BP1L.md
... ...
@@ -19,7 +19,7 @@ nocite: |
19 19
20 20
21 21
22
-[[include:mermaid_UHRF1BP1L.md]]
22
+[[include:tables/mermaid_UHRF1BP1L.md]]
23 23
24 24
## References
25 25
UNC13B.md
... ...
@@ -19,7 +19,7 @@ nocite: |
19 19
20 20
21 21
22
-[[include:mermaid_UNC13B.md]]
22
+[[include:tables/mermaid_UNC13B.md]]
23 23
24 24
## References
25 25
UNC5B.md
... ...
@@ -40,7 +40,7 @@ nocite: |
40 40
[SP59400](https://www.bcgsc.ca/downloads/morinlab/GAMBL/MALY/SP59400.html)
41 41
[SP59448](https://www.bcgsc.ca/downloads/morinlab/GAMBL/MALY/SP59448.html)
42 42
43
-[[include:mermaid_UNC5B.md]]
43
+[[include:tables/mermaid_UNC5B.md]]
44 44
45 45
## References
46 46
UNC5C.md
... ...
@@ -33,6 +33,6 @@ nocite: |
33 33
![](images/gene_expression/UNC5C_by_pathology.svg)
34 34
<!-- ORIGIN: Unknown -->
35 35
36
-[[include:mermaid_UNC5C.md]]
36
+[[include:tables/mermaid_UNC5C.md]]
37 37
38 38
## References
UQCRC1.md
... ...
@@ -19,7 +19,7 @@ nocite: |
19 19
20 20
21 21
22
-[[include:mermaid_UQCRC1.md]]
22
+[[include:tables/mermaid_UQCRC1.md]]
23 23
24 24
## References
25 25
USH2A.md
... ...
@@ -28,7 +28,7 @@ nocite: |
28 28
|MCL|GAMBL Genome |6.433 |
29 29
30 30
31
-[[include:mermaid_USH2A.md]]
31
+[[include:tables/mermaid_USH2A.md]]
32 32
33 33
## References
34 34
USP7.md
... ...
@@ -29,7 +29,7 @@ nocite: |
29 29
## Expression
30 30
![](images/gene_expression/USP7_by_pathology.svg)
31 31
32
-[[include:mermaid_USP7.md]]
32
+[[include:tables/mermaid_USP7.md]]
33 33
34 34
## References
35 35
VANGL1.md
... ...
@@ -19,7 +19,7 @@ nocite: |
19 19
20 20
21 21
22
-[[include:mermaid_VANGL1.md]]
22
+[[include:tables/mermaid_VANGL1.md]]
23 23
24 24
## References
25 25
VAX1.md
... ...
@@ -19,7 +19,7 @@ nocite: |
19 19
20 20
21 21
22
-[[include:mermaid_VAX1.md]]
22
+[[include:tables/mermaid_VAX1.md]]
23 23
24 24
## References
25 25
VMP1.md
... ...
@@ -26,7 +26,7 @@ nocite: |
26 26
|FL|GAMBL Exome |0.573 |
27 27
28 28
29
-[[include:mermaid_VMP1.md]]
29
+[[include:tables/mermaid_VMP1.md]]
30 30
31 31
## References
32 32
VPS13A.md
... ...
@@ -19,7 +19,7 @@ nocite: |
19 19
20 20
21 21
22
-[[include:mermaid_VPS13A.md]]
22
+[[include:tables/mermaid_VPS13A.md]]
23 23
24 24
## References
25 25
VWA7.md
... ...
@@ -34,6 +34,6 @@ nocite: |
34 34
<!-- ORIGIN: burkhardtClinicalRelevanceMolecular2022b -->
35 35
<!-- BL: burkhardtClinicalRelevanceMolecular2022b -->
36 36
37
-[[include:mermaid_VWA7.md]]
37
+[[include:tables/mermaid_VWA7.md]]
38 38
39 39
## References
WAC.md
... ...
@@ -66,6 +66,6 @@ nocite: |
66 66
[Reddy_3758T](https://www.bcgsc.ca/downloads/morinlab/GAMBL/Reddy/igv_reports/Reddy_3758T.html)
67 67
[Reddy_3977T](https://www.bcgsc.ca/downloads/morinlab/GAMBL/Reddy/igv_reports/Reddy_3977T.html)
68 68
69
-[[include:mermaid_WAC.md]]
69
+[[include:tables/mermaid_WAC.md]]
70 70
71 71
## References
WDFY3.md
... ...
@@ -43,6 +43,6 @@ nocite: |
43 43
[RG067](https://www.bcgsc.ca/downloads/morinlab/GAMBL/Morin_2013/RG067.html)
44 44
[RG083](https://www.bcgsc.ca/downloads/morinlab/GAMBL/Morin_2013/RG083.html)
45 45
46
-[[include:mermaid_WDFY3.md]]
46
+[[include:tables/mermaid_WDFY3.md]]
47 47
48 48
## References
WDR65.md
... ...
@@ -19,7 +19,7 @@ nocite: |
19 19
20 20
21 21
22
-[[include:mermaid_WDR65.md]]
22
+[[include:tables/mermaid_WDR65.md]]
23 23
24 24
## References
25 25
WDR66.md
... ...
@@ -19,7 +19,7 @@ nocite: |
19 19
20 20
21 21
22
-[[include:mermaid_WDR66.md]]
22
+[[include:tables/mermaid_WDR66.md]]
23 23
24 24
## References
25 25
WDR67.md
... ...
@@ -19,7 +19,7 @@ nocite: |
19 19
20 20
21 21
22
-[[include:mermaid_WDR67.md]]
22
+[[include:tables/mermaid_WDR67.md]]
23 23
24 24
## References
25 25
WDR7.md
... ...
@@ -54,6 +54,6 @@ nocite: |
54 54
55 55
56 56
57
-[[include:mermaid_WDR7.md]]
57
+[[include:tables/mermaid_WDR7.md]]
58 58
59 59
## References
WDR87.md
... ...
@@ -27,7 +27,7 @@ nocite: |
27 27
|FL|GAMBL Exome |0.287 |
28 28
29 29
30
-[[include:mermaid_WDR87.md]]
30
+[[include:tables/mermaid_WDR87.md]]
31 31
32 32
## References
33 33
WDR90.md
... ...
@@ -34,6 +34,6 @@ nocite: |
34 34
<!-- ORIGIN: schmitzBurkittLymphomaPathogenesis2012 -->
35 35
<!-- BL: schmitzBurkittLymphomaPathogenesis2012 -->
36 36
37
-[[include:mermaid_WDR90.md]]
37
+[[include:tables/mermaid_WDR90.md]]
38 38
39 39
## References
WEE1.md
... ...
@@ -49,6 +49,6 @@ WEE1 is one of [a number of genes](https://github.com/morinlab/LLMPP/wiki/ashm)
49 49
<!-- PMBL: reichelFlowSortingExome2015a -->
50 50
<!-- DLBCL: schmitzGeneticsPathogenesisDiffuse2018a -->
51 51
52
-[[include:mermaid_WEE1.md]]
52
+[[include:tables/mermaid_WEE1.md]]
53 53
54 54
## References
WHAMM.md
... ...
@@ -33,6 +33,6 @@ nocite: |
33 33
<!-- ORIGIN: schmitzBurkittLymphomaPathogenesis2012 -->
34 34
<!-- BL: schmitzBurkittLymphomaPathogenesis2012 -->
35 35
36
-[[include:mermaid_WHAMM.md]]
36
+[[include:tables/mermaid_WHAMM.md]]
37 37
38 38
## References
WIF1.md
... ...
@@ -19,7 +19,7 @@ nocite: |
19 19
20 20
21 21
22
-[[include:mermaid_WIF1.md]]
22
+[[include:tables/mermaid_WIF1.md]]
23 23
24 24
## References
25 25
WNK1.md
... ...
@@ -51,6 +51,6 @@ nocite: |
51 51
[SP59344](https://www.bcgsc.ca/downloads/morinlab/GAMBL/MALY/SP59344.html)
52 52
[SP59452](https://www.bcgsc.ca/downloads/morinlab/GAMBL/MALY/SP59452.html)
53 53
54
-[[include:mermaid_WNK1.md]]
54
+[[include:tables/mermaid_WNK1.md]]
55 55
56 56
## References
WNK2.md
... ...
@@ -40,6 +40,6 @@ nocite: |
40 40
<!-- ORIGIN: paneaWholeGenomeLandscape2019 -->
41 41
<!-- BL: paneaWholeGenomeLandscape2019 -->
42 42
43
-[[include:mermaid_WNK2.md]]
43
+[[include:tables/mermaid_WNK2.md]]
44 44
45 45
## References
WNK4.md
... ...
@@ -19,7 +19,7 @@ nocite: |
19 19
20 20
21 21
22
-[[include:mermaid_WNK4.md]]
22
+[[include:tables/mermaid_WNK4.md]]
23 23
24 24
## References
25 25
WT1.md
... ...
@@ -19,7 +19,7 @@ nocite: |
19 19
20 20
21 21
22
-[[include:mermaid_WT1.md]]
22
+[[include:tables/mermaid_WT1.md]]
23 23
24 24
## References
25 25
XDH.md
... ...
@@ -19,7 +19,7 @@ nocite: |
19 19
20 20
21 21
22
-[[include:mermaid_XDH.md]]
22
+[[include:tables/mermaid_XDH.md]]
23 23
24 24
## References
25 25
XIRP2.md
... ...
@@ -38,6 +38,6 @@ nocite: |
38 38
<!-- ORIGIN: russler-germainMutationsAssociatedProgression2023a -->
39 39
<!-- FL: russler-germainMutationsAssociatedProgression2023b -->
40 40
41
-[[include:mermaid_XIRP2.md]]
41
+[[include:tables/mermaid_XIRP2.md]]
42 42
43 43
## References
XPO1.md
... ...
@@ -41,6 +41,6 @@ Driver mutations affecting this gene in DLBCL have been experimentally demonstra
41 41
<!-- DLBCL: mareschalWholeExomeSequencing2016 -->
42 42
<!-- PMBL: jardinRecurrentMutationsExportin2016a -->
43 43
44
-[[include:mermaid_XPO1.md]]
44
+[[include:tables/mermaid_XPO1.md]]
45 45
46 46
## References
YY1.md
... ...
@@ -43,6 +43,6 @@ Mutations in this gene were reported to be inflated in the original results acco
43 43
<!-- ORIGIN: reddyGeneticFunctionalDrivers2017 -->
44 44
<!-- DLBCL: reddyGeneticFunctionalDrivers2017 -->
45 45
46
-[[include:mermaid_YY1.md]]
46
+[[include:tables/mermaid_YY1.md]]
47 47
48 48
## References
YY1AP1.md
... ...
@@ -34,6 +34,6 @@ nocite: |
34 34
<!-- ORIGIN: schmitzBurkittLymphomaPathogenesis2012 -->
35 35
<!-- BL: schmitzBurkittLymphomaPathogenesis2012 -->
36 36
37
-[[include:mermaid_YY1AP1.md]]
37
+[[include:tables/mermaid_YY1AP1.md]]
38 38
39 39
## References
ZAN.md
... ...
@@ -33,6 +33,6 @@ nocite: |
33 33
<!-- ORIGIN: burkhardtClinicalRelevanceMolecular2022b -->
34 34
<!-- BL: burkhardtClinicalRelevanceMolecular2022b -->
35 35
36
-[[include:mermaid_ZAN.md]]
36
+[[include:tables/mermaid_ZAN.md]]
37 37
38 38
## References
ZBTB7A.md
... ...
@@ -93,6 +93,6 @@ nocite: |
93 93
[Reddy_3997T](https://www.bcgsc.ca/downloads/morinlab/GAMBL/Reddy/igv_reports/Reddy_3997T.html)
94 94
[Reddy_648T](https://www.bcgsc.ca/downloads/morinlab/GAMBL/Reddy/igv_reports/Reddy_648T.html)
95 95
96
-[[include:mermaid_ZBTB7A.md]]
96
+[[include:tables/mermaid_ZBTB7A.md]]
97 97
98 98
## References
ZC3H12A.md
... ...
@@ -36,6 +36,6 @@ Driver mutations affecting this gene in DLBCL have been experimentally demonstra
36 36
<!-- ORIGIN: arthurGenomewideDiscoverySomatic2018 -->
37 37
<!-- DLBCL: arthurGenomewideDiscoverySomatic2018 -->
38 38
39
-[[include:mermaid_ZC3H12A.md]]
39
+[[include:tables/mermaid_ZC3H12A.md]]
40 40
41 41
## References
ZCCHC11.md
... ...
@@ -28,7 +28,7 @@ nocite: |
28 28
|MCL|GAMBL Genome |1.17 |
29 29
30 30
31
-[[include:mermaid_ZCCHC11.md]]
31
+[[include:tables/mermaid_ZCCHC11.md]]
32 32
33 33
## References
34 34
ZCCHC7.md
... ...
@@ -40,6 +40,6 @@ nocite: |
40 40
<!-- ORIGIN: arthurGenomewideDiscoverySomatic2018 -->
41 41
<!-- DLBCL: arthurGenomewideDiscoverySomatic2018 -->
42 42
43
-[[include:mermaid_ZCCHC7.md]]
43
+[[include:tables/mermaid_ZCCHC7.md]]
44 44
45 45
## References
ZEB2.md
... ...
@@ -40,6 +40,6 @@ Mutations in this gene were first described in DLBCL in 2013[@zhangGeneticHetero
40 40
<!-- ORIGIN: zhangGeneticHeterogeneityDiffuse2013 -->
41 41
<!-- DLBCL: zhangGeneticHeterogeneityDiffuse2013 -->
42 42
43
-[[include:mermaid_ZEB2.md]]
43
+[[include:tables/mermaid_ZEB2.md]]
44 44
45 45
## References
ZFAT.md
... ...
@@ -65,7 +65,7 @@ nocite: |
65 65
[Reddy_3991T](https://www.bcgsc.ca/downloads/morinlab/GAMBL/Reddy/igv_reports/Reddy_3991T.html)
66 66
[Reddy_4000T](https://www.bcgsc.ca/downloads/morinlab/GAMBL/Reddy/igv_reports/Reddy_4000T.html)
67 67
68
-[[include:mermaid_ZFAT.md]]
68
+[[include:tables/mermaid_ZFAT.md]]
69 69
70 70
## References
71 71
ZFP36L1.md
... ...
@@ -39,7 +39,7 @@ ZFP36L1 is one of [a number of genes](https://github.com/morinlab/LLMPP/wiki/ash
39 39
## Expression
40 40
![](images/gene_expression/ZFP36L1_by_pathology.svg)
41 41
42
-[[include:mermaid_ZFP36L1.md]]
42
+[[include:tables/mermaid_ZFP36L1.md]]
43 43
44 44
## References
45 45
ZFX.md
... ...
@@ -43,6 +43,6 @@ Mutations in this gene were reported to be inflated in the original results acco
43 43
<!-- ORIGIN: reddyGeneticFunctionalDrivers2017 -->
44 44
<!-- DLBCL: reddyGeneticFunctionalDrivers2017 -->
45 45
46
-[[include:mermaid_ZFX.md]]
46
+[[include:tables/mermaid_ZFX.md]]
47 47
48 48
## References
ZIC4.md
... ...
@@ -19,7 +19,7 @@ nocite: |
19 19
20 20
21 21
22
-[[include:mermaid_ZIC4.md]]
22
+[[include:tables/mermaid_ZIC4.md]]
23 23
24 24
## References
25 25
ZMYM4.md
... ...
@@ -19,7 +19,7 @@ nocite: |
19 19
20 20
21 21
22
-[[include:mermaid_ZMYM4.md]]
22
+[[include:tables/mermaid_ZMYM4.md]]
23 23
24 24
## References
25 25
ZNF117.md
... ...
@@ -36,6 +36,6 @@ nocite: |
36 36
<!-- ORIGIN: zhangGenomicLandscapeMantle2014 -->
37 37
<!-- MCL: zhangGenomicLandscapeMantle2014 -->
38 38
39
-[[include:mermaid_ZNF117.md]]
39
+[[include:tables/mermaid_ZNF117.md]]
40 40
41 41
## References
ZNF217.md
... ...
@@ -46,6 +46,6 @@ nocite: |
46 46
[SP193725](https://www.bcgsc.ca/downloads/morinlab/GAMBL/MALY/SP193725.html)
47 47
[SP59448](https://www.bcgsc.ca/downloads/morinlab/GAMBL/MALY/SP59448.html)
48 48
49
-[[include:mermaid_ZNF217.md]]
49
+[[include:tables/mermaid_ZNF217.md]]
50 50
51 51
## References
ZNF229.md
... ...
@@ -49,6 +49,6 @@ Due to [minimal support](ZNF229#representative-mutation) in the original primary
49 49
**Although well supported in the data, this mutation is clearly germline**
50 50
51 51
52
-[[include:mermaid_ZNF229.md]]
52
+[[include:tables/mermaid_ZNF229.md]]
53 53
54 54
## References
ZNF292.md
... ...
@@ -26,6 +26,6 @@ nocite: |
26 26
## Expression
27 27
![](images/gene_expression/ZNF292_by_pathology.svg)
28 28
29
-[[include:mermaid_ZNF292.md]]
29
+[[include:tables/mermaid_ZNF292.md]]
30 30
31 31
## References
ZNF296.md
... ...
@@ -36,6 +36,6 @@ nocite: |
36 36
<!-- ORIGIN: zhangGenomicLandscapeMantle2014 -->
37 37
<!-- MCL: zhangGenomicLandscapeMantle2014 -->
38 38
39
-[[include:mermaid_ZNF296.md]]
39
+[[include:tables/mermaid_ZNF296.md]]
40 40
41 41
## References
ZNF354A.md
... ...
@@ -19,7 +19,7 @@ nocite: |
19 19
20 20
21 21
22
-[[include:mermaid_ZNF354A.md]]
22
+[[include:tables/mermaid_ZNF354A.md]]
23 23
24 24
## References
25 25
ZNF366.md
... ...
@@ -19,7 +19,7 @@ nocite: |
19 19
20 20
21 21
22
-[[include:mermaid_ZNF366.md]]
22
+[[include:tables/mermaid_ZNF366.md]]
23 23
24 24
## References
25 25
ZNF385B.md
... ...
@@ -19,7 +19,7 @@ nocite: |
19 19
20 20
21 21
22
-[[include:mermaid_ZNF385B.md]]
22
+[[include:tables/mermaid_ZNF385B.md]]
23 23
24 24
## References
25 25
ZNF423.md
... ...
@@ -39,6 +39,6 @@ nocite: |
39 39
40 40
[DLBCL-RICOVER_181-Tumor](https://bcgsc.ca/downloads/morinlab/GAMBL/Chapuy_2018/DLBCL-RICOVER_181-Tumor.html)
41 41
42
-[[include:mermaid_ZNF423.md]]
42
+[[include:tables/mermaid_ZNF423.md]]
43 43
44 44
## References
ZNF439.md
... ...
@@ -19,7 +19,7 @@ nocite: |
19 19
20 20
21 21
22
-[[include:mermaid_ZNF439.md]]
22
+[[include:tables/mermaid_ZNF439.md]]
23 23
24 24
## References
25 25
ZNF474.md
... ...
@@ -19,7 +19,7 @@ nocite: |
19 19
20 20
21 21
22
-[[include:mermaid_ZNF474.md]]
22
+[[include:tables/mermaid_ZNF474.md]]
23 23
24 24
## References
25 25
ZNF521.md
... ...
@@ -19,7 +19,7 @@ nocite: |
19 19
20 20
21 21
22
-[[include:mermaid_ZNF521.md]]
22
+[[include:tables/mermaid_ZNF521.md]]
23 23
24 24
## References
25 25
ZNF608.md
... ...
@@ -32,6 +32,6 @@ nocite: |
32 32
<!-- FL: krysiakRecurrentSomaticMutations2017b -->
33 33
<!-- DLBCL: zhangGeneticHeterogeneityDiffuse2013 -->
34 34
35
-[[include:mermaid_ZNF608.md]]
35
+[[include:tables/mermaid_ZNF608.md]]
36 36
37 37
## References
ZNF700.md
... ...
@@ -19,7 +19,7 @@ nocite: |
19 19
20 20
21 21
22
-[[include:mermaid_ZNF700.md]]
22
+[[include:tables/mermaid_ZNF700.md]]
23 23
24 24
## References
25 25
ZNF790.md
... ...
@@ -19,7 +19,7 @@ nocite: |
19 19
20 20
21 21
22
-[[include:mermaid_ZNF790.md]]
22
+[[include:tables/mermaid_ZNF790.md]]
23 23
24 24
## References
25 25
ZNF814.md
... ...
@@ -19,7 +19,7 @@ nocite: |
19 19
20 20
21 21
22
-[[include:mermaid_ZNF814.md]]
22
+[[include:tables/mermaid_ZNF814.md]]
23 23
24 24
## References
25 25
ZNF85.md
... ...
@@ -34,6 +34,6 @@ nocite: |
34 34
<!-- ORIGIN: burkhardtClinicalRelevanceMolecular2022b -->
35 35
<!-- BL: burkhardtClinicalRelevanceMolecular2022b -->
36 36
37
-[[include:mermaid_ZNF85.md]]
37
+[[include:tables/mermaid_ZNF85.md]]
38 38
39 39
## References
ZNF91.md
... ...
@@ -15,7 +15,7 @@ nocite: |
15 15
16 16
[[include:table1_ZNF91.md]]
17 17
18
-[[include:mermaid_ZNF91.md]]
18
+[[include:tables/mermaid_ZNF91.md]]
19 19
20 20
## References
21 21
ZP1.md
... ...
@@ -16,7 +16,7 @@ nocite: |
16 16
[[include:table1_ZP1.md]]
17 17
18 18
19
-[[include:mermaid_ZP1.md]]
19
+[[include:tables/mermaid_ZP1.md]]
20 20
21 21
## References
22 22
ZWILCH.md
... ...
@@ -16,7 +16,7 @@ nocite: |
16 16
[[include:table1_ZWILCH.md]]
17 17
18 18
19
-[[include:mermaid_ZWILCH.md]]
19
+[[include:tables/mermaid_ZWILCH.md]]
20 20
21 21
## References
22 22
browser_ICK.md
... ...
@@ -7,21 +7,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/I
7 7
8 8
![](images/proteinpaint/ICK.svg)
9 9
10
-<!-- ORIGIN: loveGeneticLandscapeMutations2012 -->
11
-<!-- BL: loveGeneticLandscapeMutations2012 -->
12 10
13
-## Representative Mutations
14
-
15
-![](primary/Love_ICK.svg)
16
-**Rating**
17
-&starf; &star; &star; &star; &star;
18
-
19
-
20
-## All Mutations
21
-
22
-[1092](https://www.bcgsc.ca/downloads/morinlab/GAMBL/Love/1092_reports.html)
23
-[516](https://www.bcgsc.ca/downloads/morinlab/GAMBL/Love/516_reports.html)
24
-
25
-[[include:mermaid_ICK.md]]
26
-
27
-## References
update_link.pl
... ...
@@ -0,0 +1,31 @@
1
+#!/usr/bin/env perl
2
+use Data::Dumper;
3
+use strict;
4
+chomp(my @md_files = `ls *md`);
5
+my $pattern = "mermaid_";
6
+sub fix_dnds{
7
+ my $md = shift;
8
+ open IN, $md or die "$!\n";
9
+ my @lines = <IN>;
10
+ close IN;
11
+ open OUT, ">$md" or die "$!\n";
12
+ for(@lines){
13
+ if(/$pattern/){
14
+ s/$pattern/tables\/$pattern/;
15
+ }
16
+ print OUT;
17
+ }
18
+ close OUT;
19
+}
20
+
21
+for my $md (@md_files){
22
+ next if $md =~ /table1/ || $md =~ /FL_/ || $md =~ /BL_/ || $md =~ /DLBCL_/;
23
+ my @match_lines = `grep $pattern $md | grep -v tables`;
24
+ if(@match_lines){
25
+ print "MATCH: $md\n";
26
+ fix_dnds($md);
27
+ #die;
28
+ }else{
29
+ #print "SKIP: $md\n";
30
+ }
31
+}