papers/hubschmannMutationalMechanismsShaping2021b.md
... ...
@@ -6,10 +6,11 @@ bibliography: 'morinlab.bib'
6 6
# @hubschmannMutationalMechanismsShaping2021b
7 7
## Summary of novel genes
8 8
9
-|Entity| Tier 1 genes| Tier 2 genes|
10
-|:-:|:-:|:-:|
11
-|FL|2|15|
12
-|DLBCL|3|23|
9
+|Entity| Total| Tier 1| Tier 2| Tier 2 Pass| Tier 2 Fail| Fail rate |
10
+|:-:|:-:|:-:|:-:|:-:|:-:|:-:|
11
+|DLBCL or FL|38|4|34|31|3| 9% |
12
+
13
+
13 14
```mermaid
14 15
---
15 16
config:
... ...
@@ -23,12 +24,10 @@ config:
23 24
suffix: ' genes)'
24 25
---
25 26
sankey-beta
26
-This study, New Tier 1, 3
27
-New Tier 1, DLBCL Tier 1, 3
28
-This study, New Tier 2, 23
29
-New Tier 2, DLBCL Tier 2, 23
30
-All other DLBCL studies, DLBCL Tier 1, 125
31
-All other DLBCL studies, DLBCL Tier 2, 175
27
+New to this study, FL or DLBCL Tier 1, 4
28
+New to this study, FL or DLBCL Tier 2, 34
29
+FL or DLBCL Tier 2, Pass QC, 31
30
+FL or DLBCL Tier 2, Fail QC, 3
32 31
```
33 32
34 33
## Novel genes reported in this study
... ...
@@ -55,7 +54,6 @@ All other DLBCL studies, DLBCL Tier 2, 175
55 54
|[DHX16](../DHX16)| |2 |★ ★ ★ ★ ☆|**Pass**|
56 55
|[DNM2](../DNM2)| |2 |★ ★ ★ ☆ ☆|**Pass**|
57 56
|[FZR1](../FZR1)|2 | |★ ★ ★ ☆ ☆|**Pass**|
58
-|[HLA-DQA1](../HLA-DQA1)| |2 |★ ★☆ ☆ ☆|**Fail**|
59 57
|[IKBKE](../IKBKE)| |2 |★ ★ ★ ★ ☆|**Pass**|
60 58
|[IRF1](../IRF1)| |2 |★ ★ ★ ☆ ☆|**Pass**|
61 59
|[JUP](../JUP)|2 | |★ ★ ★ ★ ☆|**Pass**|
... ...
@@ -76,6 +74,7 @@ All other DLBCL studies, DLBCL Tier 2, 175
76 74
|[UNC5B](../UNC5B)| |2 |★ ★ ★ ☆ ☆|**Pass**|
77 75
|[WNK1](../WNK1)| |2 |★ ★ ★ ☆ ☆|**Pass**|
78 76
|[ZNF217](../ZNF217)| |2 |★ ★ ★ ☆ ☆|**Pass**|
77
+|[HLA-DQA1](../HLA-DQA1)| |2 |★ ★☆ ☆ ☆|**Fail**|
79 78
|[GAK](../GAK)| |2 |★ ★ ☆ ☆ ☆|**Fail**|
80 79
|[NR2F2](../NR2F2)| |2 |★ ★ ☆ ☆ ☆|**Fail**|
81 80