Papers.md
... ...
@@ -5,8 +5,8 @@ bibliography: 'morinlab.bib'
5 5
6 6
|Year|Focus|Methodology|Study|
7 7
|:-:|:-:|:---:|:-------:|
8
-|1992|DLBCL|Sanger|[@tanakaFrequentIncidenceSomatic1992](papers/tanakaFrequentIncidenceSomatic1992.md)|
9 8
|1992|BL|Sanger|[@johnstonCmycHypermutationBurkitt1992](papers/johnstonCmycHypermutationBurkitt1992.md)|
9
+|1992|DLBCL|Sanger|[@tanakaFrequentIncidenceSomatic1992](papers/tanakaFrequentIncidenceSomatic1992.md)|
10 10
|2001|DLBCL|Sanger|[@pasqualucciHypermutationMultipleProtooncogenes2001a](papers/pasqualucciHypermutationMultipleProtooncogenes2001a.md)|
11 11
|2004|BL|Sanger|[@wildaInactivationARFMDM2p53Pathway2004](papers/wildaInactivationARFMDM2p53Pathway2004.md)|
12 12
|2006|DLBCL|Sanger|[@pasqualucciInactivationPRDM1BLIMP12006a](papers/pasqualucciInactivationPRDM1BLIMP12006a.md)|
... ...
@@ -15,77 +15,77 @@ bibliography: 'morinlab.bib'
15 15
|2008|DLBCL|Sanger|[@lenzOncogenicCARD11Mutations2008](papers/lenzOncogenicCARD11Mutations2008.md)|
16 16
|2008|DLBCL|Sanger|[@troenNOTCH2MutationsMarginal2008](papers/troenNOTCH2MutationsMarginal2008.md)|
17 17
|2009|PMBL|Sanger|[@schmitzTNFAIP3A20Tumor2009a](papers/schmitzTNFAIP3A20Tumor2009a.md)|
18
+|2009|DLBCL|Sanger|[@compagnoMutationsMultipleGenes2009a](papers/compagnoMutationsMultipleGenes2009a.md)|
18 19
|2009|PMBL|Sanger|[@ritzRecurrentMutationsSTAT62009a](papers/ritzRecurrentMutationsSTAT62009a.md)|
19 20
|2009|DLBCL|Sanger|[@lakeMutationsNFKBIAEncoding2009](papers/lakeMutationsNFKBIAEncoding2009.md)|
20
-|2009|DLBCL|Sanger|[@compagnoMutationsMultipleGenes2009a](papers/compagnoMutationsMultipleGenes2009a.md)|
21
-|2010|FL||[@morinSomaticMutationsAltering2010a](papers/morinSomaticMutationsAltering2010a.md)|
21
+|2010|FL|RNA-seq/WGS|[@morinSomaticMutationsAltering2010a](papers/morinSomaticMutationsAltering2010a.md)|
22 22
|2010|FL|Sanger|[@cheungAcquiredTNFRSF14Mutations2010a](papers/cheungAcquiredTNFRSF14Mutations2010a.md)|
23
-|2011|DLBCL|RNA-seq/WGS|[@morinFrequentMutationHistonemodifying2011](papers/morinFrequentMutationHistonemodifying2011.md)|
24 23
|2011|DLBCL|exome|[@pasqualucciAnalysisCodingGenome2011](papers/pasqualucciAnalysisCodingGenome2011.md)|
24
+|2011|DLBCL|RNA-seq/WGS|[@morinFrequentMutationHistonemodifying2011](papers/morinFrequentMutationHistonemodifying2011.md)|
25 25
|2011|MZL|Sanger|[@rossiAlterationBIRC3Multiple2011a](papers/rossiAlterationBIRC3Multiple2011a.md)|
26
-|2011|DLBCL|Sanger|[@ngoOncogenicallyActiveMYD882011a](papers/ngoOncogenicallyActiveMYD882011a.md)|
27
-|2011|DLBCL|exome|[@pasqualucciInactivatingMutationsAcetyltransferase2011a](papers/pasqualucciInactivatingMutationsAcetyltransferase2011a.md)|
28 26
|2011|DLBCL|exome/Sanger|[@tiacciBRAFMutationsHairycell2011a](papers/tiacciBRAFMutationsHairycell2011a.md)|
29
-|2012|BL|RNA-seq|[@schmitzBurkittLymphomaPathogenesis2012](papers/schmitzBurkittLymphomaPathogenesis2012.md)|
27
+|2011|FL|exome|[@pasqualucciInactivatingMutationsAcetyltransferase2011a](papers/pasqualucciInactivatingMutationsAcetyltransferase2011a.md)|
28
+|2011|DLBCL|Sanger|[@ngoOncogenicallyActiveMYD882011a](papers/ngoOncogenicallyActiveMYD882011a.md)|
29
+|2012|BL|RNA-seq/WGS/exome|[@richterRecurrentMutationID32012a](papers/richterRecurrentMutationID32012a.md)|
30 30
|2012|MZL|Panel|[@yanBCRTLRSignaling2012a](papers/yanBCRTLRSignaling2012a.md)|
31
-|2012|PMBL|Array/Sanger|[@ottoGeneticLesionsTRAF32012a](papers/ottoGeneticLesionsTRAF32012a.md)|
31
+|2012|DLBCL|exome|[@lohrDiscoveryPrioritizationSomatic2012a](papers/lohrDiscoveryPrioritizationSomatic2012a.md)|
32 32
|2012|MZL|exome|[@rossiCodingGenomeSplenic2012c](papers/rossiCodingGenomeSplenic2012c.md)|
33 33
|2012|DLBCL|WGS|[@khodabakhshiRecurrentTargetsAberrant2012](papers/khodabakhshiRecurrentTargetsAberrant2012.md)|
34
-|2012|MZL|Array/Sanger|[@braggioGenomicAnalysisMarginal2012](papers/braggioGenomicAnalysisMarginal2012.md)|
35
-|2012|DLBCL|exome|[@lohrDiscoveryPrioritizationSomatic2012a](papers/lohrDiscoveryPrioritizationSomatic2012a.md)|
36
-|2012|BL|RNA-seq/WGS/exome|[@richterRecurrentMutationID32012a](papers/richterRecurrentMutationID32012a.md)|
37
-|2012|BL|exome|[@loveGeneticLandscapeMutations2012](papers/loveGeneticLandscapeMutations2012.md)|
38 34
|2012|DLBCL|Sanger|[@kwanhianMicroRNA142Mutated202012b](papers/kwanhianMicroRNA142Mutated202012b.md)|
39
-|2013|DLBCL|WGS|[@morinMutationalStructuralAnalysis2013](papers/morinMutationalStructuralAnalysis2013.md)|
40
-|2013|DLBCL|exome|[@zhangGeneticHeterogeneityDiffuse2013](papers/zhangGeneticHeterogeneityDiffuse2013.md)|
41
-|2013|MZL|exome|[@parryWholeExomeSequencing2013](papers/parryWholeExomeSequencing2013.md)|
35
+|2012|BL|exome|[@loveGeneticLandscapeMutations2012](papers/loveGeneticLandscapeMutations2012.md)|
36
+|2012|BL|RNA-seq|[@schmitzBurkittLymphomaPathogenesis2012](papers/schmitzBurkittLymphomaPathogenesis2012.md)|
37
+|2012|PMBL|Array/Sanger|[@ottoGeneticLesionsTRAF32012a](papers/ottoGeneticLesionsTRAF32012a.md)|
38
+|2012|MZL|Array/Sanger|[@braggioGenomicAnalysisMarginal2012](papers/braggioGenomicAnalysisMarginal2012.md)|
42 39
|2013|MCL|WGS/exome|[@beaLandscapeSomaticMutations2013](papers/beaLandscapeSomaticMutations2013.md)|
40
+|2013|DLBCL|exome|[@zhangGeneticHeterogeneityDiffuse2013](papers/zhangGeneticHeterogeneityDiffuse2013.md)|
41
+|2013|DLBCL|WGS|[@morinMutationalStructuralAnalysis2013](papers/morinMutationalStructuralAnalysis2013.md)|
43 42
|2013|DLBCL|Sanger|[@bohleRoleEarlyBcell2013](papers/bohleRoleEarlyBcell2013.md)|
44
-|2014|PMBL|WGS/Sanger|[@gunawardanaRecurrentSomaticMutations2014c](papers/gunawardanaRecurrentSomaticMutations2014c.md)|
45
-|2014|MCL|exome|[@zhangGenomicLandscapeMantle2014](papers/zhangGenomicLandscapeMantle2014.md)|
43
+|2013|MZL|exome|[@parryWholeExomeSequencing2013](papers/parryWholeExomeSequencing2013.md)|
46 44
|2014|BL|Sanger|[@muppidiLossSignalingGa132014b](papers/muppidiLossSignalingGa132014b.md)|
45
+|2014|MCL|exome|[@zhangGenomicLandscapeMantle2014](papers/zhangGenomicLandscapeMantle2014.md)|
46
+|2014|PMBL|WGS/Sanger|[@gunawardanaRecurrentSomaticMutations2014c](papers/gunawardanaRecurrentSomaticMutations2014c.md)|
47
+|2015|DLBCL|Sanger|[@shinBRAFV600EMAP2K12015](papers/shinBRAFV600EMAP2K12015.md)|
48
+|2015|PMBL|Sanger|[@schneiderAlterationsCD58Gene2015a](papers/schneiderAlterationsCD58Gene2015a.md)|
49
+|2015|PMBL|Sanger|[@mottokGenomicAlterationsCIITA2015b](papers/mottokGenomicAlterationsCIITA2015b.md)|
47 50
|2015|DLBCL|Sanger|[@yildizActivatingSTAT6Mutations2015c](papers/yildizActivatingSTAT6Mutations2015c.md)|
48 51
|2015|PMBL|exome|[@reichelFlowSortingExome2015a](papers/reichelFlowSortingExome2015a.md)|
49
-|2015|DLBCL|Sanger|[@shinBRAFV600EMAP2K12015](papers/shinBRAFV600EMAP2K12015.md)|
50 52
|2015|BL|RNA-seq|[@abateDistinctViralMutational2015a](papers/abateDistinctViralMutational2015a.md)|
51
-|2015|PMBL|Sanger|[@mottokGenomicAlterationsCIITA2015b](papers/mottokGenomicAlterationsCIITA2015b.md)|
52
-|2015|PMBL|Sanger|[@schneiderAlterationsCD58Gene2015a](papers/schneiderAlterationsCD58Gene2015a.md)|
53
-|2016|FL|exome|[@louissaintPediatrictypeNodalFollicular2016a](papers/louissaintPediatrictypeNodalFollicular2016a.md)|
54 53
|2016|PMBL|Sanger|[@jardinRecurrentMutationsExportin2016a](papers/jardinRecurrentMutationsExportin2016a.md)|
55
-|2016|MZL|exome/panel|[@spinaGeneticsNodalMarginal2016b](papers/spinaGeneticsNodalMarginal2016b.md)|
56
-|2016|DLBCL|exome|[@morinGeneticLandscapesRelapsed2016](papers/morinGeneticLandscapesRelapsed2016.md)|
57 54
|2016|MZL|exome|[@ganapathiGeneticLandscapeDural2016](papers/ganapathiGeneticLandscapeDural2016.md)|
58
-|2016|FL|WGS|[@okosunRecurrentMTORC1activatingRRAGC2016a](papers/okosunRecurrentMTORC1activatingRRAGC2016a.md)|
59 55
|2016|DLBCL|exome|[@mareschalWholeExomeSequencing2016](papers/mareschalWholeExomeSequencing2016.md)|
56
+|2016|DLBCL|exome|[@morinGeneticLandscapesRelapsed2016](papers/morinGeneticLandscapesRelapsed2016.md)|
57
+|2016|MZL|exome/panel|[@spinaGeneticsNodalMarginal2016b](papers/spinaGeneticsNodalMarginal2016b.md)|
58
+|2016|FL|WGS|[@okosunRecurrentMTORC1activatingRRAGC2016a](papers/okosunRecurrentMTORC1activatingRRAGC2016a.md)|
60 59
|2016|MCL|exome|[@wuGeneticHeterogeneityPrimary2016](papers/wuGeneticHeterogeneityPrimary2016.md)|
60
+|2016|FL|exome|[@louissaintPediatrictypeNodalFollicular2016a](papers/louissaintPediatrictypeNodalFollicular2016a.md)|
61 61
|2016|PMBL|exome/Sanger|[@mansouriFrequentNFKBIEDeletions2016](papers/mansouriFrequentNFKBIEDeletions2016.md)|
62
-|2017|FL||[@oricchioGeneticEpigeneticInactivation2017b](papers/oricchioGeneticEpigeneticInactivation2017b.md)|
63 62
|2017|DLBCL|exome|[@albuquerqueEnhancingKnowledgeDiscovery2017a](papers/albuquerqueEnhancingKnowledgeDiscovery2017a.md)|
63
+|2017|FL||[@oricchioGeneticEpigeneticInactivation2017b](papers/oricchioGeneticEpigeneticInactivation2017b.md)|
64 64
|2017|MZL|panel|[@vandenbrandRecurrentMutationsGenes2017](papers/vandenbrandRecurrentMutationsGenes2017.md)|
65
+|2017|DLBCL|exome|[@reddyGeneticFunctionalDrivers2017](papers/reddyGeneticFunctionalDrivers2017.md)|
65 66
|2017|FL|exome|[@krysiakRecurrentSomaticMutations2017b](papers/krysiakRecurrentSomaticMutations2017b.md)|
66 67
|2017|MZL|exome|[@jalladesExomeSequencingIdentifies2017](papers/jalladesExomeSequencingIdentifies2017.md)|
67
-|2017|DLBCL|exome|[@reddyGeneticFunctionalDrivers2017](papers/reddyGeneticFunctionalDrivers2017.md)|
68
-|2018|DLBCL|WGS|[@arthurGenomewideDiscoverySomatic2018](papers/arthurGenomewideDiscoverySomatic2018.md)|
69
-|2018|DLBCL|exome|[@schmitzGeneticsPathogenesisDiffuse2018a](papers/schmitzGeneticsPathogenesisDiffuse2018a.md)|
70 68
|2018|DLBCL|exome|[@chapuyMolecularSubtypesDiffuse2018b](papers/chapuyMolecularSubtypesDiffuse2018b.md)|
71
-|2018|PMBL|Sanger|[@viganoSomaticIL4RMutations2018b](papers/viganoSomaticIL4RMutations2018b.md)|
72 69
|2018|PMBL|exome|[@tiacciPervasiveMutationsJAKSTAT2018b](papers/tiacciPervasiveMutationsJAKSTAT2018b.md)|
73
-|2019|PMBL|exome|[@wienandGenomicAnalysesFlowsorted2019b](papers/wienandGenomicAnalysesFlowsorted2019b.md)|
70
+|2018|DLBCL|WGS|[@arthurGenomewideDiscoverySomatic2018](papers/arthurGenomewideDiscoverySomatic2018.md)|
71
+|2018|PMBL|Sanger|[@viganoSomaticIL4RMutations2018b](papers/viganoSomaticIL4RMutations2018b.md)|
72
+|2018|DLBCL|exome|[@schmitzGeneticsPathogenesisDiffuse2018a](papers/schmitzGeneticsPathogenesisDiffuse2018a.md)|
74 73
|2019|BL|exome|[@zhouSporadicEndemicBurkitt2019](papers/zhouSporadicEndemicBurkitt2019.md)|
75
-|2019|BL|RNA-seq/exome|[@paneaWholeGenomeLandscape2019](papers/paneaWholeGenomeLandscape2019.md)|
74
+|2019|PMBL|exome|[@wienandGenomicAnalysesFlowsorted2019b](papers/wienandGenomicAnalysesFlowsorted2019b.md)|
76 75
|2019|BL|WGS|[@grandeGenomewideDiscoverySomatic2019](papers/grandeGenomewideDiscoverySomatic2019.md)|
76
+|2019|BL|RNA-seq/exome|[@paneaWholeGenomeLandscape2019](papers/paneaWholeGenomeLandscape2019.md)|
77 77
|2019|PMBL|exome|[@mottokIntegrativeGenomicAnalysis2019b](papers/mottokIntegrativeGenomicAnalysis2019b.md)|
78
-|2020|MCL|WGS/exome|[@pararajalingamCodingNoncodingDrivers2020](papers/pararajalingamCodingNoncodingDrivers2020.md)|
78
+|2020|DLBCL|exome/panel|[@rushtonGeneticEvolutionaryPatterns2020](papers/rushtonGeneticEvolutionaryPatterns2020.md)|
79
+|2020|MCL|WGS|[@nadeuGenomicEpigenomicInsights2020b](papers/nadeuGenomicEpigenomicInsights2020b.md)|
79 80
|2020|FL|panel|[@barariaCathepsinAlterationsInduce2020c](papers/barariaCathepsinAlterationsInduce2020c.md)|
81
+|2020|MCL|WGS/exome|[@pararajalingamCodingNoncodingDrivers2020](papers/pararajalingamCodingNoncodingDrivers2020.md)|
80 82
|2020|PMBL|panel|[@deschGenotypingCirculatingTumor2020](papers/deschGenotypingCirculatingTumor2020.md)|
81
-|2020|MCL|WGS|[@nadeuGenomicEpigenomicInsights2020b](papers/nadeuGenomicEpigenomicInsights2020b.md)|
82
-|2020|DLBCL|exome/panel|[@rushtonGeneticEvolutionaryPatterns2020](papers/rushtonGeneticEvolutionaryPatterns2020.md)|
83 83
|2021|PMBL|exome|[@dunsCharacterizationDLBCLPMBL2021b](papers/dunsCharacterizationDLBCLPMBL2021b.md)|
84
-|2021|PMBL|exome|[@sarkozyMutationalLandscapeGray2021a](papers/sarkozyMutationalLandscapeGray2021a.md)|
85 84
|2021|DLBCL|WGS|[@hubschmannMutationalMechanismsShaping2021b](papers/hubschmannMutationalMechanismsShaping2021b.md)|
85
+|2021|PMBL|exome|[@sarkozyMutationalLandscapeGray2021a](papers/sarkozyMutationalLandscapeGray2021a.md)|
86 86
|2022|BL|panel|[@burkhardtClinicalRelevanceMolecular2022b](papers/burkhardtClinicalRelevanceMolecular2022b.md)|
87
-|2023|FL|exome|[@russler-germainMutationsAssociatedProgression2023b](papers/russler-germainMutationsAssociatedProgression2023b.md)|
88 87
|2023|PMBL|exome|[@gomezUltraDeepSequencingReveals2023](papers/gomezUltraDeepSequencingReveals2023.md)|
88
+|2023|FL|exome|[@russler-germainMutationsAssociatedProgression2023b](papers/russler-germainMutationsAssociatedProgression2023b.md)|
89 89
|2023|BL|WGS|[@thomasGeneticSubgroupsInform2023](papers/thomasGeneticSubgroupsInform2023.md)|
90 90
91 91
# References