papers/loveGeneticLandscapeMutations2012.pdf
papers/loveGeneticLandscapeMutations2012_tmp.html
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-<h1 id="lovegeneticlandscapemutations2012">@loveGeneticLandscapeMutations2012</h1>
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-<h2 id="summary-of-novel-genes">Summary of novel genes</h2>
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-<table>
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-<thead>
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-<tr>
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-<th style="text-align:center">Entity</th>
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-<th style="text-align:center">Total</th>
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-<th style="text-align:center">Tier 1</th>
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-<th style="text-align:center">Tier 2</th>
377
-<th style="text-align:center">Tier 2 Pass</th>
378
-<th style="text-align:center">Tier 2 Fail</th>
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-<th style="text-align:center">Fail rate</th>
380
-</tr>
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-</thead>
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-<tbody>
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-<tr>
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-<td style="text-align:center">BL</td>
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-<td style="text-align:center">59</td>
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-<td style="text-align:center">3</td>
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-<td style="text-align:center">56</td>
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-<td style="text-align:center">9</td>
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-<td style="text-align:center">47</td>
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-<td style="text-align:center">80%</td>
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-</tr>
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-</tbody>
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-</table>
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----
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-sankey-beta
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-New to this study, BL Tier 1, 3
407
-New to this study, BL Tier 2, 56
408
-BL Tier 2, Pass QC, 9
409
-BL Tier 2, Fail QC, 47
410
-</div></code></pre>
411
-<h2 id="novel-genes-reported-in-this-study">Novel genes reported in this study</h2>
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-<h3 id="tier-1">Tier 1</h3>
413
-<table>
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-<thead>
415
-<tr>
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-<th style="text-align:left">New gene</th>
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-<th style="text-align:center">BL tier</th>
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-</tr>
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-</thead>
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-<tbody>
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-<tr>
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-<td style="text-align:left"><a href="../ARID1A">ARID1A</a></td>
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-<td style="text-align:center">1</td>
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-</tr>
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-<tr>
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-<td style="text-align:left"><a href="../GNA13">GNA13</a></td>
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-<td style="text-align:center">1</td>
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-</tr>
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-<tr>
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-<td style="text-align:left"><a href="../PTEN">PTEN</a></td>
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-<td style="text-align:center">1</td>
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-</tr>
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-</tbody>
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-</table>
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-<h3 id="tier-2">Tier 2</h3>
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-<table>
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-<thead>
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-<tr>
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-<th style="text-align:left">Novel gene</th>
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-<th style="text-align:center">DLBCL tier</th>
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-<th style="text-align:center">Average variant quality</th>
442
-<th style="text-align:center">QC outcome</th>
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-</tr>
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-</thead>
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-<tbody>
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-<tr>
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-<td style="text-align:left"><a href="../ACAD9">ACAD9</a></td>
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-<td style="text-align:center">2</td>
449
-<td style="text-align:center">★ ☆ ☆ ☆ ☆</td>
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-<td style="text-align:center"><strong>Fail</strong></td>
451
-</tr>
452
-<tr>
453
-<td style="text-align:left"><a href="../ACE">ACE</a></td>
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-<td style="text-align:center">2</td>
455
-<td style="text-align:center">★ ☆ ☆ ☆ ☆</td>
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-<td style="text-align:center"><strong>Fail</strong></td>
457
-</tr>
458
-<tr>
459
-<td style="text-align:left"><a href="../ATP2C2">ATP2C2</a></td>
460
-<td style="text-align:center">2</td>
461
-<td style="text-align:center">★ ★ ☆ ☆ ☆</td>
462
-<td style="text-align:center"><strong>Fail</strong></td>
463
-</tr>
464
-<tr>
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-<td style="text-align:left"><a href="../BCL6">BCL6</a></td>
466
-<td style="text-align:center">2</td>
467
-<td style="text-align:center">★ ★ ★ ★ ☆</td>
468
-<td style="text-align:center"><strong>Pass</strong></td>
469
-</tr>
470
-<tr>
471
-<td style="text-align:left"><a href="../BRAF">BRAF</a></td>
472
-<td style="text-align:center">2</td>
473
-<td style="text-align:center">★ ☆ ☆ ☆ ☆</td>
474
-<td style="text-align:center"><strong>Fail</strong></td>
475
-</tr>
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-<tr>
477
-<td style="text-align:left"><a href="../BRD4">BRD4</a></td>
478
-<td style="text-align:center">2</td>
479
-<td style="text-align:center">★ ☆ ☆ ☆ ☆</td>
480
-<td style="text-align:center"><strong>Fail</strong></td>
481
-</tr>
482
-<tr>
483
-<td style="text-align:left"><a href="../BTG2">BTG2</a></td>
484
-<td style="text-align:center">2</td>
485
-<td style="text-align:center">★ ☆ ☆ ☆ ☆</td>
486
-<td style="text-align:center"><strong>Fail</strong></td>
487
-</tr>
488
-<tr>
489
-<td style="text-align:left"><a href="../C6orf27">C6orf27</a></td>
490
-<td style="text-align:center">2</td>
491
-<td style="text-align:center">★ ☆ ☆ ☆ ☆</td>
492
-<td style="text-align:center"><strong>Fail</strong></td>
493
-</tr>
494
-<tr>
495
-<td style="text-align:left"><a href="../CAD">CAD</a></td>
496
-<td style="text-align:center">2</td>
497
-<td style="text-align:center">★ ☆ ☆ ☆ ☆</td>
498
-<td style="text-align:center"><strong>Fail</strong></td>
499
-</tr>
500
-<tr>
501
-<td style="text-align:left"><a href="../CARD4">CARD4</a></td>
502
-<td style="text-align:center">2</td>
503
-<td style="text-align:center">★ ★ ★ ★ ☆</td>
504
-<td style="text-align:center"><strong>Pass</strong></td>
505
-</tr>
506
-<tr>
507
-<td style="text-align:left"><a href="../CCT6B">CCT6B</a></td>
508
-<td style="text-align:center">2</td>
509
-<td style="text-align:center"><em>Germline</em></td>
510
-<td style="text-align:center"><strong>Fail</strong></td>
511
-</tr>
512
-<tr>
513
-<td style="text-align:left"><a href="../CDC73">CDC73</a></td>
514
-<td style="text-align:center">2</td>
515
-<td style="text-align:center">★ ★ ★ ☆ ☆</td>
516
-<td style="text-align:center"><strong>Pass</strong></td>
517
-</tr>
518
-<tr>
519
-<td style="text-align:left"><a href="../CDH17">CDH17</a></td>
520
-<td style="text-align:center">2</td>
521
-<td style="text-align:center">★ ☆ ☆ ☆ ☆</td>
522
-<td style="text-align:center"><strong>Fail</strong></td>
523
-</tr>
524
-<tr>
525
-<td style="text-align:left"><a href="../COL4A2">COL4A2</a></td>
526
-<td style="text-align:center">2</td>
527
-<td style="text-align:center">★ ☆ ☆ ☆ ☆</td>
528
-<td style="text-align:center"><strong>Fail</strong></td>
529
-</tr>
530
-<tr>
531
-<td style="text-align:left"><a href="../CREBBP">CREBBP</a></td>
532
-<td style="text-align:center">2</td>
533
-<td style="text-align:center">★ ★ ★ ★ ☆</td>
534
-<td style="text-align:center"><strong>Pass</strong></td>
535
-</tr>
536
-<tr>
537
-<td style="text-align:left"><a href="../CYB5D1">CYB5D1</a></td>
538
-<td style="text-align:center">2</td>
539
-<td style="text-align:center">★ ★ ☆ ☆ ☆</td>
540
-<td style="text-align:center"><strong>Fail</strong></td>
541
-</tr>
542
-<tr>
543
-<td style="text-align:left"><a href="../CYP4F22">CYP4F22</a></td>
544
-<td style="text-align:center">2</td>
545
-<td style="text-align:center">★ ☆ ☆ ☆ ☆</td>
546
-<td style="text-align:center"><strong>Fail</strong></td>
547
-</tr>
548
-<tr>
549
-<td style="text-align:left"><a href="../DLGAP1">DLGAP1</a></td>
550
-<td style="text-align:center">2</td>
551
-<td style="text-align:center">★ ☆ ☆ ☆ ☆</td>
552
-<td style="text-align:center"><strong>Fail</strong></td>
553
-</tr>
554
-<tr>
555
-<td style="text-align:left"><a href="../DTX1">DTX1</a></td>
556
-<td style="text-align:center">2</td>
557
-<td style="text-align:center">★ ☆ ☆ ☆ ☆</td>
558
-<td style="text-align:center"><strong>Fail</strong></td>
559
-</tr>
560
-<tr>
561
-<td style="text-align:left"><a href="../EIF2C4">EIF2C4</a></td>
562
-<td style="text-align:center">2</td>
563
-<td style="text-align:center">★ ☆ ☆ ☆ ☆</td>
564
-<td style="text-align:center"><strong>Fail</strong></td>
565
-</tr>
566
-<tr>
567
-<td style="text-align:left"><a href="../EML2">EML2</a></td>
568
-<td style="text-align:center">2</td>
569
-<td style="text-align:center">★ ☆ ☆ ☆ ☆</td>
570
-<td style="text-align:center"><strong>Fail</strong></td>
571
-</tr>
572
-<tr>
573
-<td style="text-align:left"><a href="../ENTPD3">ENTPD3</a></td>
574
-<td style="text-align:center">2</td>
575
-<td style="text-align:center">★ ★ ☆ ☆ ☆</td>
576
-<td style="text-align:center"><strong>Fail</strong></td>
577
-</tr>
578
-<tr>
579
-<td style="text-align:left"><a href="../EPHB2">EPHB2</a></td>
580
-<td style="text-align:center">2</td>
581
-<td style="text-align:center">★ ★ ☆ ☆ ☆</td>
582
-<td style="text-align:center"><strong>Fail</strong></td>
583
-</tr>
584
-<tr>
585
-<td style="text-align:left"><a href="../EZH2">EZH2</a></td>
586
-<td style="text-align:center">2</td>
587
-<td style="text-align:center">★ ★ ★ ★ ★</td>
588
-<td style="text-align:center"><strong>Pass</strong></td>
589
-</tr>
590
-<tr>
591
-<td style="text-align:left"><a href="../FAM129B">FAM129B</a></td>
592
-<td style="text-align:center">2</td>
593
-<td style="text-align:center">★ ★ ☆ ☆ ☆</td>
594
-<td style="text-align:center"><strong>Fail</strong></td>
595
-</tr>
596
-<tr>
597
-<td style="text-align:left"><a href="../FGFR3">FGFR3</a></td>
598
-<td style="text-align:center">2</td>
599
-<td style="text-align:center">★ ☆ ☆ ☆ ☆</td>
600
-<td style="text-align:center"><strong>Fail</strong></td>
601
-</tr>
602
-<tr>
603
-<td style="text-align:left"><a href="../FTCD">FTCD</a></td>
604
-<td style="text-align:center">2</td>
605
-<td style="text-align:center"><em>Germline</em></td>
606
-<td style="text-align:center"><strong>Fail</strong></td>
607
-</tr>
608
-<tr>
609
-<td style="text-align:left"><a href="../GGTLA4">GGTLA4</a></td>
610
-<td style="text-align:center">2</td>
611
-<td style="text-align:center">★ ★ ★ ★ ☆</td>
612
-<td style="text-align:center"><strong>Pass</strong></td>
613
-</tr>
614
-<tr>
615
-<td style="text-align:left"><a href="../GRIK5">GRIK5</a></td>
616
-<td style="text-align:center">2</td>
617
-<td style="text-align:center">★ ☆ ☆ ☆ ☆</td>
618
-<td style="text-align:center"><strong>Fail</strong></td>
619
-</tr>
620
-<tr>
621
-<td style="text-align:left"><a href="../ICK">ICK</a></td>
622
-<td style="text-align:center">2</td>
623
-<td style="text-align:center">★ ☆ ☆ ☆ ☆</td>
624
-<td style="text-align:center"><strong>Fail</strong></td>
625
-</tr>
626
-<tr>
627
-<td style="text-align:left"><a href="../ITPR3">ITPR3</a></td>
628
-<td style="text-align:center">2</td>
629
-<td style="text-align:center">★ ☆ ☆ ☆ ☆</td>
630
-<td style="text-align:center"><strong>Fail</strong></td>
631
-</tr>
632
-<tr>
633
-<td style="text-align:left"><a href="../KIFC3">KIFC3</a></td>
634
-<td style="text-align:center">2</td>
635
-<td style="text-align:center">★ ☆ ☆ ☆ ☆</td>
636
-<td style="text-align:center"><strong>Fail</strong></td>
637
-</tr>
638
-<tr>
639
-<td style="text-align:left"><a href="../MAP3K6">MAP3K6</a></td>
640
-<td style="text-align:center">2</td>
641
-<td style="text-align:center">★ ☆ ☆ ☆ ☆</td>
642
-<td style="text-align:center"><strong>Fail</strong></td>
643
-</tr>
644
-<tr>
645
-<td style="text-align:left"><a href="../MYH10">MYH10</a></td>
646
-<td style="text-align:center">2</td>
647
-<td style="text-align:center">★ ☆ ☆ ☆ ☆</td>
648
-<td style="text-align:center"><strong>Fail</strong></td>
649
-</tr>
650
-<tr>
651
-<td style="text-align:left"><a href="../NBEAL1">NBEAL1</a></td>
652
-<td style="text-align:center">2</td>
653
-<td style="text-align:center">★ ★ ★ ★ ☆</td>
654
-<td style="text-align:center"><strong>Pass</strong></td>
655
-</tr>
656
-<tr>
657
-<td style="text-align:left"><a href="../NOTCH1">NOTCH1</a></td>
658
-<td style="text-align:center">2</td>
659
-<td style="text-align:center">★ ☆ ☆ ☆ ☆</td>
660
-<td style="text-align:center"><strong>Fail</strong></td>
661
-</tr>
662
-<tr>
663
-<td style="text-align:left"><a href="../NRXN2">NRXN2</a></td>
664
-<td style="text-align:center">2</td>
665
-<td style="text-align:center">★ ☆ ☆ ☆ ☆</td>
666
-<td style="text-align:center"><strong>Fail</strong></td>
667
-</tr>
668
-<tr>
669
-<td style="text-align:left"><a href="../P2RY2">P2RY2</a></td>
670
-<td style="text-align:center">2</td>
671
-<td style="text-align:center">★ ★ ★ ★ ☆</td>
672
-<td style="text-align:center"><strong>Pass</strong></td>
673
-</tr>
674
-<tr>
675
-<td style="text-align:left"><a href="../PC">PC</a></td>
676
-<td style="text-align:center">2</td>
677
-<td style="text-align:center">★ ☆ ☆ ☆ ☆</td>
678
-<td style="text-align:center"><strong>Fail</strong></td>
679
-</tr>
680
-<tr>
681
-<td style="text-align:left"><a href="../POLRMT">POLRMT</a></td>
682
-<td style="text-align:center">2</td>
683
-<td style="text-align:center">★ ☆ ☆ ☆ ☆</td>
684
-<td style="text-align:center"><strong>Fail</strong></td>
685
-</tr>
686
-<tr>
687
-<td style="text-align:left"><a href="../POR">POR</a></td>
688
-<td style="text-align:center">2</td>
689
-<td style="text-align:center">★ ☆ ☆ ☆ ☆</td>
690
-<td style="text-align:center"><strong>Fail</strong></td>
691
-</tr>
692
-<tr>
693
-<td style="text-align:left"><a href="../PRSS22">PRSS22</a></td>
694
-<td style="text-align:center">2</td>
695
-<td style="text-align:center">★ ☆ ☆ ☆ ☆</td>
696
-<td style="text-align:center"><strong>Fail</strong></td>
697
-</tr>
698
-<tr>
699
-<td style="text-align:left"><a href="../PTPRN">PTPRN</a></td>
700
-<td style="text-align:center">2</td>
701
-<td style="text-align:center">★ ☆ ☆ ☆ ☆</td>
702
-<td style="text-align:center"><strong>Fail</strong></td>
703
-</tr>
704
-<tr>
705
-<td style="text-align:left"><a href="../RANBP6">RANBP6</a></td>
706
-<td style="text-align:center">2</td>
707
-<td style="text-align:center">★ ★ ★ ★ ★</td>
708
-<td style="text-align:center"><strong>Pass</strong></td>
709
-</tr>
710
-<tr>
711
-<td style="text-align:left"><a href="../RBP3">RBP3</a></td>
712
-<td style="text-align:center">2</td>
713
-<td style="text-align:center">★ ☆ ☆ ☆ ☆</td>
714
-<td style="text-align:center"><strong>Fail</strong></td>
715
-</tr>
716
-<tr>
717
-<td style="text-align:left"><a href="../RET">RET</a></td>
718
-<td style="text-align:center">2</td>
719
-<td style="text-align:center">★ ☆ ☆ ☆ ☆</td>
720
-<td style="text-align:center"><strong>Fail</strong></td>
721
-</tr>
722
-<tr>
723
-<td style="text-align:left"><a href="../SALL3">SALL3</a></td>
724
-<td style="text-align:center">2</td>
725
-<td style="text-align:center">★ ★ ☆ ☆ ☆</td>
726
-<td style="text-align:center"><strong>Fail</strong></td>
727
-</tr>
728
-<tr>
729
-<td style="text-align:left"><a href="../SAPS2">SAPS2</a></td>
730
-<td style="text-align:center">2</td>
731
-<td style="text-align:center">★ ☆ ☆ ☆ ☆</td>
732
-<td style="text-align:center"><strong>Fail</strong></td>
733
-</tr>
734
-<tr>
735
-<td style="text-align:left"><a href="../SBF1">SBF1</a></td>
736
-<td style="text-align:center">2</td>
737
-<td style="text-align:center">★ ★ ☆ ☆ ☆</td>
738
-<td style="text-align:center"><strong>Fail</strong></td>
739
-</tr>
740
-<tr>
741
-<td style="text-align:left"><a href="../SF3B1">SF3B1</a></td>
742
-<td style="text-align:center">2</td>
743
-<td style="text-align:center">★ ★ ★ ★ ☆</td>
744
-<td style="text-align:center"><strong>Fail</strong></td>
745
-</tr>
746
-<tr>
747
-<td style="text-align:left"><a href="../SHANK1">SHANK1</a></td>
748
-<td style="text-align:center">2</td>
749
-<td style="text-align:center">★ ☆ ☆ ☆ ☆</td>
750
-<td style="text-align:center"><strong>Fail</strong></td>
751
-</tr>
752
-<tr>
753
-<td style="text-align:left"><a href="../SLC29A2">SLC29A2</a></td>
754
-<td style="text-align:center">2</td>
755
-<td style="text-align:center">★ ☆ ☆ ☆ ☆</td>
756
-<td style="text-align:center"><strong>Fail</strong></td>
757
-</tr>
758
-<tr>
759
-<td style="text-align:left"><a href="../SYNGAP1">SYNGAP1</a></td>
760
-<td style="text-align:center">2</td>
761
-<td style="text-align:center">★ ☆ ☆ ☆ ☆</td>
762
-<td style="text-align:center"><strong>Fail</strong></td>
763
-</tr>
764
-<tr>
765
-<td style="text-align:left"><a href="../TBC1D9B">TBC1D9B</a></td>
766
-<td style="text-align:center">2</td>
767
-<td style="text-align:center">★ ☆ ☆ ☆ ☆</td>
768
-<td style="text-align:center"><strong>Fail</strong></td>
769
-</tr>
770
-<tr>
771
-<td style="text-align:left"><a href="../TIGD6">TIGD6</a></td>
772
-<td style="text-align:center">2</td>
773
-<td style="text-align:center">★ ☆ ☆ ☆ ☆</td>
774
-<td style="text-align:center"><strong>Fail</strong></td>
775
-</tr>
776
-<tr>
777
-<td style="text-align:left"><a href="../TPST2">TPST2</a></td>
778
-<td style="text-align:center">2</td>
779
-<td style="text-align:center">☆ ☆ ☆ ☆ ☆</td>
780
-<td style="text-align:center"><strong>Fail</strong></td>
781
-</tr>
782
-<tr>
783
-<td style="text-align:left"><a href="../ZNF229">ZNF229</a></td>
784
-<td style="text-align:center">2</td>
785
-<td style="text-align:center"><em>Germline</em></td>
786
-<td style="text-align:center"><strong>Fail</strong></td>
787
-</tr>
788
-</tbody>
789
-</table>
790
-<h2 id="see-also">See Also</h2>
791
-<p>The primary data supporting each of the mutations reported in this study can be viewed in <a href="https://www.bcgsc.ca/downloads/morinlab/GAMBL/Love/">IGV reports</a></p>
792
-<h1 id="details">Details</h1>
793
-
794
-</body>
795
-</html>
papers/reddyGeneticFunctionalDrivers2017.md
... ...
@@ -6,9 +6,9 @@ bibliography: 'morinlab.bib'
6 6
# @reddyGeneticFunctionalDrivers2017
7 7
## Summary of novel genes
8 8
9
-|Entity| Total| Tier 1| Tier 2| Tier 2 Pass| Tier 2 Fail|
10
-|:-:|:-:|:-:|:-:|:-:|:-:|
11
-|DLBCL|60| 7|53|24|29|
9
+|Entity| Total| Tier 1| Tier 2| Tier 2 Pass| Tier 2 Fail|Fail rate |
10
+|:-:|:-:|:-:|:-:|:-:|:-:|:-:|
11
+|DLBCL|60| 7|53|24|29|48%|
12 12
13 13
```mermaid
14 14
---
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280
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281
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282
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284
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285
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286
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287
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288
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290
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291
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302
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304
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306
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307
+ * Markdown PDF CSS
308
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309
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310
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311
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312
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313
+}
314
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315
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316
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317
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318
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319
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320
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321
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322
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323
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324
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325
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326
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327
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328
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331
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332
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333
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335
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336
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337
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344
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345
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346
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347
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348
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350
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351
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352
+ page-break-after: always;
353
+}
354
+
355
+</style>
356
+
357
+<script src="https://unpkg.com/mermaid/dist/mermaid.min.js"></script>
358
+</head>
359
+<body>
360
+ <script>
361
+ mermaid.initialize({
362
+ startOnLoad: true,
363
+ theme: document.body.classList.contains('vscode-dark') || document.body.classList.contains('vscode-high-contrast')
364
+ ? 'dark'
365
+ : 'default'
366
+ });
367
+ </script>
368
+<h1 id="reddygeneticfunctionaldrivers2017">@reddyGeneticFunctionalDrivers2017</h1>
369
+<h2 id="summary-of-novel-genes">Summary of novel genes</h2>
370
+<table>
371
+<thead>
372
+<tr>
373
+<th style="text-align:center">Entity</th>
374
+<th style="text-align:center">Total</th>
375
+<th style="text-align:center">Tier 1</th>
376
+<th style="text-align:center">Tier 2</th>
377
+<th style="text-align:center">Tier 2 Pass</th>
378
+<th style="text-align:center">Tier 2 Fail</th>
379
+<th style="text-align:center">Fail rate</th>
380
+</tr>
381
+</thead>
382
+<tbody>
383
+<tr>
384
+<td style="text-align:center">DLBCL</td>
385
+<td style="text-align:center">60</td>
386
+<td style="text-align:center">7</td>
387
+<td style="text-align:center">53</td>
388
+<td style="text-align:center">24</td>
389
+<td style="text-align:center">29</td>
390
+<td style="text-align:center">48%</td>
391
+</tr>
392
+</tbody>
393
+</table>
394
+<pre><code class="language-mermaid"><div class="mermaid">---
395
+config:
396
+ sankey:
397
+ showValues: true
398
+ linkColor: target
399
+ width: 600
400
+ height: 300
401
+ nodeAlignment: right
402
+ prefix: '('
403
+ suffix: ' genes)'
404
+---
405
+sankey-beta
406
+New to this study, DLBCL Tier 1, 7
407
+New to this study, DLBCL Tier 2, 53
408
+DLBCL Tier 2, Pass QC, 24
409
+DLBCL Tier 2, Fail QC, 29
410
+</div></code></pre>
411
+<h2 id="novel-genes-reported-in-this-study">Novel genes reported in this study</h2>
412
+<h3 id="tier-1">Tier 1</h3>
413
+<table>
414
+<thead>
415
+<tr>
416
+<th style="text-align:left">Novel gene</th>
417
+<th style="text-align:center">DLBCL tier</th>
418
+<th style="text-align:center">Average variant quality</th>
419
+</tr>
420
+</thead>
421
+<tbody>
422
+<tr>
423
+<td style="text-align:left"><a href="../ATM">ATM</a></td>
424
+<td style="text-align:center">1</td>
425
+<td style="text-align:center">★ ★ ★ ☆ ☆</td>
426
+</tr>
427
+<tr>
428
+<td style="text-align:left"><a href="../BIRC6">BIRC6</a></td>
429
+<td style="text-align:center">1</td>
430
+<td style="text-align:center">★ ★ ★ ☆ ☆</td>
431
+</tr>
432
+<tr>
433
+<td style="text-align:left"><a href="../HIST1H2BC">HIST1H2BC</a></td>
434
+<td style="text-align:center">1</td>
435
+<td style="text-align:center">★ ★ ★ ★ ☆</td>
436
+</tr>
437
+<tr>
438
+<td style="text-align:left"><a href="../HNRNPU">HNRNPU</a></td>
439
+<td style="text-align:center">1</td>
440
+<td style="text-align:center">★ ★ ★ ☆ ☆</td>
441
+</tr>
442
+<tr>
443
+<td style="text-align:left"><a href="../SETD1B">SETD1B</a></td>
444
+<td style="text-align:center">1</td>
445
+<td style="text-align:center">★ ★ ☆ ☆ ☆</td>
446
+</tr>
447
+<tr>
448
+<td style="text-align:left"><a href="../TOX">TOX</a></td>
449
+<td style="text-align:center">1</td>
450
+<td style="text-align:center">★ ★ ★ ☆ ☆</td>
451
+</tr>
452
+<tr>
453
+<td style="text-align:left"><a href="../UBE2A">UBE2A</a></td>
454
+<td style="text-align:center">1</td>
455
+<td style="text-align:center">★ ★ ★ ☆ ☆</td>
456
+</tr>
457
+</tbody>
458
+</table>
459
+<h3 id="tier-2">Tier 2</h3>
460
+<table>
461
+<thead>
462
+<tr>
463
+<th style="text-align:left">Novel gene</th>
464
+<th style="text-align:center">DLBCL tier</th>
465
+<th style="text-align:center">Average variant quality</th>
466
+<th style="text-align:center">QC outcome</th>
467
+</tr>
468
+</thead>
469
+<tbody>
470
+<tr>
471
+<td style="text-align:left"><a href="../ARID5B">ARID5B</a></td>
472
+<td style="text-align:center">2</td>
473
+<td style="text-align:center">★ ★ ★ ★ ☆</td>
474
+<td style="text-align:center"><strong>Pass</strong></td>
475
+</tr>
476
+<tr>
477
+<td style="text-align:left"><a href="../BTBD3">BTBD3</a></td>
478
+<td style="text-align:center">2</td>
479
+<td style="text-align:center">★ ★ ★ ★ ☆</td>
480
+<td style="text-align:center"><strong>Pass</strong></td>
481
+</tr>
482
+<tr>
483
+<td style="text-align:left"><a href="../SETD5">SETD5</a></td>
484
+<td style="text-align:center">2</td>
485
+<td style="text-align:center">★ ★ ★ ☆ ☆</td>
486
+<td style="text-align:center"><strong>Pass</strong></td>
487
+</tr>
488
+<tr>
489
+<td style="text-align:left"><a href="../ATR">ATR</a></td>
490
+<td style="text-align:center">2</td>
491
+<td style="text-align:center">★ ★ ★ ☆ ☆</td>
492
+<td style="text-align:center"><strong>Pass</strong></td>
493
+</tr>
494
+<tr>
495
+<td style="text-align:left"><a href="../BRINP3">BRINP3</a></td>
496
+<td style="text-align:center">2</td>
497
+<td style="text-align:center">★ ★ ★ ☆ ☆</td>
498
+<td style="text-align:center"><strong>Pass</strong></td>
499
+</tr>
500
+<tr>
501
+<td style="text-align:left"><a href="../CASP8">CASP8</a></td>
502
+<td style="text-align:center">2</td>
503
+<td style="text-align:center">★ ★ ★ ☆ ☆</td>
504
+<td style="text-align:center"><strong>Pass</strong></td>
505
+</tr>
506
+<tr>
507
+<td style="text-align:left"><a href="../TGFBR2">TGFBR2</a></td>
508
+<td style="text-align:center">2</td>
509
+<td style="text-align:center">★ ★ ★ ☆ ☆</td>
510
+<td style="text-align:center"><strong>Pass</strong></td>
511
+</tr>
512
+<tr>
513
+<td style="text-align:left"><a href="../TIPARP">TIPARP</a></td>
514
+<td style="text-align:center">2</td>
515
+<td style="text-align:center">★ ★ ★ ☆ ☆</td>
516
+<td style="text-align:center"><strong>Pass</strong></td>
517
+</tr>
518
+<tr>
519
+<td style="text-align:left"><a href="../CD22">CD22</a></td>
520
+<td style="text-align:center">2</td>
521
+<td style="text-align:center">★ ★ ★ ☆ ☆</td>
522
+<td style="text-align:center"><strong>Pass</strong></td>
523
+</tr>
524
+<tr>
525
+<td style="text-align:left"><a href="../NF1">NF1</a></td>
526
+<td style="text-align:center">2</td>
527
+<td style="text-align:center">★ ★ ★ ☆ ☆</td>
528
+<td style="text-align:center"><strong>Pass</strong></td>
529
+</tr>
530
+<tr>
531
+<td style="text-align:left"><a href="../IKBKB">IKBKB</a></td>
532
+<td style="text-align:center">2</td>
533
+<td style="text-align:center">★ ★ ★ ☆ ☆</td>
534
+<td style="text-align:center"><strong>Pass</strong></td>
535
+</tr>
536
+<tr>
537
+<td style="text-align:left"><a href="../JUNB">JUNB</a></td>
538
+<td style="text-align:center">2</td>
539
+<td style="text-align:center">★ ★ ★ ☆ ☆</td>
540
+<td style="text-align:center"><strong>Pass</strong></td>
541
+</tr>
542
+<tr>
543
+<td style="text-align:left"><a href="../KCMF1">KCMF1</a></td>
544
+<td style="text-align:center">2</td>
545
+<td style="text-align:center">★ ★ ★ ☆ ☆</td>
546
+<td style="text-align:center"><strong>Pass</strong></td>
547
+</tr>
548
+<tr>
549
+<td style="text-align:left"><a href="../MAGT1">MAGT1</a></td>
550
+<td style="text-align:center">2</td>
551
+<td style="text-align:center">★ ★ ★ ☆ ☆</td>
552
+<td style="text-align:center"><strong>Pass</strong></td>
553
+</tr>
554
+<tr>
555
+<td style="text-align:left"><a href="../MECOM">MECOM</a></td>
556
+<td style="text-align:center">2</td>
557
+<td style="text-align:center">★ ★ ★ ☆ ☆</td>
558
+<td style="text-align:center"><strong>Pass</strong></td>
559
+</tr>
560
+<tr>
561
+<td style="text-align:left"><a href="../PTPN6">PTPN6</a></td>
562
+<td style="text-align:center">2</td>
563
+<td style="text-align:center">★ ★ ★ ☆ ☆</td>
564
+<td style="text-align:center"><strong>Pass</strong></td>
565
+</tr>
566
+<tr>
567
+<td style="text-align:left"><a href="../MET">MET</a></td>
568
+<td style="text-align:center">2</td>
569
+<td style="text-align:center">★ ★ ★ ☆ ☆</td>
570
+<td style="text-align:center"><strong>Pass</strong></td>
571
+</tr>
572
+<tr>
573
+<td style="text-align:left"><a href="../ZFX">ZFX</a></td>
574
+<td style="text-align:center">2</td>
575
+<td style="text-align:center">★ ★ ★ ☆ ☆</td>
576
+<td style="text-align:center"><strong>Pass</strong></td>
577
+</tr>
578
+<tr>
579
+<td style="text-align:left"><a href="../YY1">YY1</a></td>
580
+<td style="text-align:center">2</td>
581
+<td style="text-align:center">★ ★ ★ ☆ ☆</td>
582
+<td style="text-align:center"><strong>Pass</strong></td>
583
+</tr>
584
+<tr>
585
+<td style="text-align:left"><a href="../FOXP1">FOXP1</a></td>
586
+<td style="text-align:center">2</td>
587
+<td style="text-align:center">★ ★ ★ ☆ ☆</td>
588
+<td style="text-align:center"><strong>Pass</strong></td>
589
+</tr>
590
+<tr>
591
+<td style="text-align:left"><a href="../FUBP1">FUBP1</a></td>
592
+<td style="text-align:center">2</td>
593
+<td style="text-align:center">★ ★ ★ ☆ ☆</td>
594
+<td style="text-align:center"><strong>Pass</strong></td>
595
+</tr>
596
+<tr>
597
+<td style="text-align:left"><a href="../GOLGA5">GOLGA5</a></td>
598
+<td style="text-align:center">2</td>
599
+<td style="text-align:center">★ ★ ★ ☆ ☆</td>
600
+<td style="text-align:center"><strong>Pass</strong></td>
601
+</tr>
602
+<tr>
603
+<td style="text-align:left"><a href="../MSH6">MSH6</a></td>
604
+<td style="text-align:center">2</td>
605
+<td style="text-align:center">★ ★ ★ ☆ ☆</td>
606
+<td style="text-align:center"><strong>Pass</strong></td>
607
+</tr>
608
+<tr>
609
+<td style="text-align:left"><a href="../MCL1">MCL1</a></td>
610
+<td style="text-align:center">2</td>
611
+<td style="text-align:center">★ ★ ★ ☆ ☆</td>
612
+<td style="text-align:center"><strong>Pass</strong></td>
613
+</tr>
614
+<tr>
615
+<td style="text-align:left"><a href="../ANKRD17">ANKRD17</a></td>
616
+<td style="text-align:center">2</td>
617
+<td style="text-align:center">★ ★ ★ ☆ ☆</td>
618
+<td style="text-align:center"><strong>Fail</strong></td>
619
+</tr>
620
+<tr>
621
+<td style="text-align:left"><a href="../CDC73">CDC73</a></td>
622
+<td style="text-align:center">2</td>
623
+<td style="text-align:center">★ ★ ☆ ☆ ☆</td>
624
+<td style="text-align:center"><strong>Fail</strong></td>
625
+</tr>
626
+<tr>
627
+<td style="text-align:left"><a href="../CHD1">CHD1</a></td>
628
+<td style="text-align:center">2</td>
629
+<td style="text-align:center">★ ★ ☆ ☆ ☆</td>
630
+<td style="text-align:center"><strong>Fail</strong></td>
631
+</tr>
632
+<tr>
633
+<td style="text-align:left"><a href="../CHD8">CHD8</a></td>
634
+<td style="text-align:center">2</td>
635
+<td style="text-align:center">★ ★ ☆ ☆ ☆</td>
636
+<td style="text-align:center"><strong>Fail</strong></td>
637
+</tr>
638
+<tr>
639
+<td style="text-align:left"><a href="../CHST2">CHST2</a></td>
640
+<td style="text-align:center">2</td>
641
+<td style="text-align:center">★ ★ ☆ ☆ ☆</td>
642
+<td style="text-align:center"><strong>Fail</strong></td>
643
+</tr>
644
+<tr>
645
+<td style="text-align:left"><a href="../DCAF6">DCAF6</a></td>
646
+<td style="text-align:center">2</td>
647
+<td style="text-align:center">★ ★ ☆ ☆ ☆</td>
648
+<td style="text-align:center"><strong>Fail</strong></td>
649
+</tr>
650
+<tr>
651
+<td style="text-align:left"><a href="../DDX10">DDX10</a></td>
652
+<td style="text-align:center">2</td>
653
+<td style="text-align:center">★ ★ ☆ ☆ ☆</td>
654
+<td style="text-align:center"><strong>Fail</strong></td>
655
+</tr>
656
+<tr>
657
+<td style="text-align:left"><a href="../DICER1">DICER1</a></td>
658
+<td style="text-align:center">2</td>
659
+<td style="text-align:center">★ ★ ☆ ☆ ☆</td>
660
+<td style="text-align:center"><strong>Fail</strong></td>
661
+</tr>
662
+<tr>
663
+<td style="text-align:left"><a href="../HRAS">HRAS</a></td>
664
+<td style="text-align:center">2</td>
665
+<td style="text-align:center">★ ★ ☆ ☆ ☆</td>
666
+<td style="text-align:center"><strong>Fail</strong></td>
667
+</tr>
668
+<tr>
669
+<td style="text-align:left"><a href="../LIN54">LIN54</a></td>
670
+<td style="text-align:center">2</td>
671
+<td style="text-align:center">★ ★ ☆ ☆ ☆</td>
672
+<td style="text-align:center"><strong>Fail</strong></td>
673
+</tr>
674
+<tr>
675
+<td style="text-align:left"><a href="../MAP4K4">MAP4K4</a></td>
676
+<td style="text-align:center">2</td>
677
+<td style="text-align:center">★ ★ ☆ ☆ ☆</td>
678
+<td style="text-align:center"><strong>Fail</strong></td>
679
+</tr>
680
+<tr>
681
+<td style="text-align:left"><a href="../MSH2">MSH2</a></td>
682
+<td style="text-align:center">2</td>
683
+<td style="text-align:center">★ ★ ☆ ☆ ☆</td>
684
+<td style="text-align:center"><strong>Fail</strong></td>
685
+</tr>
686
+<tr>
687
+<td style="text-align:left"><a href="../GNAS">GNAS</a></td>
688
+<td style="text-align:center">2</td>
689
+<td style="text-align:center">★ ★ ☆ ☆ ☆</td>
690
+<td style="text-align:center"><strong>Fail</strong></td>
691
+</tr>
692
+<tr>
693
+<td style="text-align:left"><a href="../MYB">MYB</a></td>
694
+<td style="text-align:center">2</td>
695
+<td style="text-align:center">★ ★ ☆ ☆ ☆</td>
696
+<td style="text-align:center"><strong>Fail</strong></td>
697
+</tr>
698
+<tr>
699
+<td style="text-align:left"><a href="../NCOR1">NCOR1</a></td>
700
+<td style="text-align:center">2</td>
701
+<td style="text-align:center">★ ★ ☆ ☆ ☆</td>
702
+<td style="text-align:center"><strong>Fail</strong></td>
703
+</tr>
704
+<tr>
705
+<td style="text-align:left"><a href="../NFKB2">NFKB2</a></td>
706
+<td style="text-align:center">2</td>
707
+<td style="text-align:center">★ ★ ☆ ☆ ☆</td>
708
+<td style="text-align:center"><strong>Fail</strong></td>
709
+</tr>
710
+<tr>
711
+<td style="text-align:left"><a href="../PHF6">PHF6</a></td>
712
+<td style="text-align:center">2</td>
713
+<td style="text-align:center">★ ★ ☆ ☆ ☆</td>
714
+<td style="text-align:center"><strong>Fail</strong></td>
715
+</tr>
716
+<tr>
717
+<td style="text-align:left"><a href="../PIK3CD">PIK3CD</a></td>
718
+<td style="text-align:center">2</td>
719
+<td style="text-align:center">★ ★ ☆ ☆ ☆</td>
720
+<td style="text-align:center"><strong>Fail</strong></td>
721
+</tr>
722
+<tr>
723
+<td style="text-align:left"><a href="../PTPRK">PTPRK</a></td>
724
+<td style="text-align:center">2</td>
725
+<td style="text-align:center">★ ★ ☆ ☆ ☆</td>
726
+<td style="text-align:center"><strong>Fail</strong></td>
727
+</tr>
728
+<tr>
729
+<td style="text-align:left"><a href="../ZFAT">ZFAT</a></td>
730
+<td style="text-align:center">2</td>
731
+<td style="text-align:center">★ ★ ☆ ☆ ☆</td>
732
+<td style="text-align:center"><strong>Fail</strong></td>
733
+</tr>
734
+<tr>
735
+<td style="text-align:left"><a href="../ARID1B">ARID1B</a></td>
736
+<td style="text-align:center">2</td>
737
+<td style="text-align:center">★ ★ ☆ ☆ ☆</td>
738
+<td style="text-align:center"><strong>Fail</strong></td>
739
+</tr>
740
+<tr>
741
+<td style="text-align:left"><a href="../RUNX1">RUNX1</a></td>
742
+<td style="text-align:center">2</td>
743
+<td style="text-align:center">★ ★ ☆ ☆ ☆</td>
744
+<td style="text-align:center"><strong>Fail</strong></td>
745
+</tr>
746
+<tr>
747
+<td style="text-align:left"><a href="../CBLB">CBLB</a></td>
748
+<td style="text-align:center">2</td>
749
+<td style="text-align:center">★ ★ ☆ ☆ ☆</td>
750
+<td style="text-align:center"><strong>Fail</strong></td>
751
+</tr>
752
+<tr>
753
+<td style="text-align:left"><a href="../SYK">SYK</a></td>
754
+<td style="text-align:center">2</td>
755
+<td style="text-align:center">★ ★ ☆ ☆ ☆</td>
756
+<td style="text-align:center"><strong>Fail</strong></td>
757
+</tr>
758
+<tr>
759
+<td style="text-align:left"><a href="../WAC">WAC</a></td>
760
+<td style="text-align:center">2</td>
761
+<td style="text-align:center">★ ★ ☆ ☆ ☆</td>
762
+<td style="text-align:center"><strong>Fail</strong></td>
763
+</tr>
764
+<tr>
765
+<td style="text-align:left"><a href="../ZBTB7A">ZBTB7A</a></td>
766
+<td style="text-align:center">2</td>
767
+<td style="text-align:center">★ ☆ ☆ ☆ ☆</td>
768
+<td style="text-align:center"><strong>Fail</strong></td>
769
+</tr>
770
+<tr>
771
+<td style="text-align:left"><a href="../RARA">RARA</a></td>
772
+<td style="text-align:center">2</td>
773
+<td style="text-align:center">★ ☆ ☆ ☆ ☆</td>
774
+<td style="text-align:center"><strong>Fail</strong></td>
775
+</tr>
776
+<tr>
777
+<td style="text-align:left"><a href="../DNMT3A">DNMT3A</a></td>
778
+<td style="text-align:center">2</td>
779
+<td style="text-align:center">★ ☆ ☆ ☆ ☆</td>
780
+<td style="text-align:center"><strong>Fail</strong></td>
781
+</tr>
782
+<tr>
783
+<td style="text-align:left"><a href="../MARK1">MARK1</a></td>
784
+<td style="text-align:center">2</td>
785
+<td style="text-align:center">★ ☆ ☆ ☆ ☆</td>
786
+<td style="text-align:center"><strong>Fail</strong></td>
787
+</tr>
788
+</tbody>
789
+</table>
790
+<h2 id="see-also">See Also</h2>
791
+<p>The primary data supporting each of the mutations reported in this study can be viewed in <a href="https://www.bcgsc.ca/downloads/morinlab/GAMBL/Reddy/igv_reports/">IGV reports</a> along with mutations unique to the GAMBL re-analysis.[@drevalRevisitingReddyDLBCL2023]</p>
792
+<h1 id="references">References</h1>
793
+
794
+</body>
795
+</html>