2a8a5b3f420701ad4bbd3a07a631b4292afedcab
BL_genes.md
| ... | ... | @@ -15,35 +15,35 @@ link-citations: true |
| 15 | 15 | |
| 16 | 16 | |Gene|Tier| First BL evidence | Other entities | |
| 17 | 17 | |:-:|:-:|:--|:-| |
| 18 | -|[ARID1A](ARID1A)|1|[Love et al](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|[@wienandGenomicAnalysesFlowsorted2019b; @zhangGeneticHeterogeneityDiffuse2013; @krysiakRecurrentSomaticMutations2017b; @rossiCodingGenomeSplenic2012c]| |
|
| 19 | -|[BCL7A](BCL7A)|1|[Grande et al](papers/grandeGenomewideDiscoverySomatic2019)[@grandeGenomewideDiscoverySomatic2019]|[@zhangGeneticHeterogeneityDiffuse2013; @krysiakRecurrentSomaticMutations2017b; @reichelFlowSortingExome2015a]| |
|
| 18 | +|[ARID1A](ARID1A)|1|[Love et al](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|[@wienandGenomicAnalysesFlowsorted2019b; @krysiakRecurrentSomaticMutations2017b; @rossiCodingGenomeSplenic2012c; @zhangGeneticHeterogeneityDiffuse2013]| |
|
| 19 | +|[BCL7A](BCL7A)|1|[Grande et al](papers/grandeGenomewideDiscoverySomatic2019)[@grandeGenomewideDiscoverySomatic2019]|[@reichelFlowSortingExome2015a; @zhangGeneticHeterogeneityDiffuse2013; @krysiakRecurrentSomaticMutations2017b]| |
|
| 20 | 20 | |[BMP7](BMP7)|1|[Panea et al](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|| |
| 21 | -|[CCND3](CCND3)|1|[Richter et al](papers/richterRecurrentMutationID32012a)[@richterRecurrentMutationID32012a]|[@jalladesExomeSequencingIdentifies2017; @deschGenotypingCirculatingTumor2020; @morinFrequentMutationHistonemodifying2011]| |
|
| 21 | +|[CCND3](CCND3)|1|[Richter et al](papers/richterRecurrentMutationID32012a)[@richterRecurrentMutationID32012a]|[@deschGenotypingCirculatingTumor2020; @morinFrequentMutationHistonemodifying2011; @jalladesExomeSequencingIdentifies2017]| |
|
| 22 | 22 | |[CHD8](CHD8)|1|[Grande et al](papers/grandeGenomewideDiscoverySomatic2019)[@grandeGenomewideDiscoverySomatic2019]|| |
| 23 | -|[DDX3X](DDX3X)|1|[Schmitz et al](papers/schmitzBurkittLymphomaPathogenesis2012)[@schmitzBurkittLymphomaPathogenesis2012]|[@schmitzGeneticsPathogenesisDiffuse2018a; @mottokIntegrativeGenomicAnalysis2019b]| |
|
| 23 | +|[DDX3X](DDX3X)|1|[Schmitz et al](papers/schmitzBurkittLymphomaPathogenesis2012)[@schmitzBurkittLymphomaPathogenesis2012]|[@reddyGeneticFunctionalDrivers2017; @mottokIntegrativeGenomicAnalysis2019b]| |
|
| 24 | 24 | |[EIF4A1](EIF4A1)|1|[Panea et al](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|| |
| 25 | 25 | |[EPPK1](EPPK1)|1|[Panea et al](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|| |
| 26 | 26 | |[FBXO11](FBXO11)|1|[Richter et al](papers/richterRecurrentMutationID32012a)[@richterRecurrentMutationID32012a]|[@parryWholeExomeSequencing2013; @hubschmannMutationalMechanismsShaping2021b]| |
| 27 | -|[FOXO1](FOXO1)|1|[Schmitz et al](papers/schmitzBurkittLymphomaPathogenesis2012)[@schmitzBurkittLymphomaPathogenesis2012]|[@morinFrequentMutationHistonemodifying2011; @dunsCharacterizationDLBCLPMBL2021b]| |
|
| 27 | +|[FOXO1](FOXO1)|1|[Schmitz et al](papers/schmitzBurkittLymphomaPathogenesis2012)[@schmitzBurkittLymphomaPathogenesis2012]|[@dunsCharacterizationDLBCLPMBL2021b; @morinFrequentMutationHistonemodifying2011]| |
|
| 28 | 28 | |[GNA13](GNA13)|1|[Love et al](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|[@reichelFlowSortingExome2015a; @morinFrequentMutationHistonemodifying2011]| |
| 29 | 29 | |[GNAI2](GNAI2)|1|[Grande et al](papers/grandeGenomewideDiscoverySomatic2019)[@grandeGenomewideDiscoverySomatic2019]|[@morinMutationalStructuralAnalysis2013]| |
| 30 | 30 | |[HNRNPU](HNRNPU)|1|[Panea et al](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|[@reddyGeneticFunctionalDrivers2017]| |
| 31 | -|[ID3](ID3)|1|[Richter et al](papers/richterRecurrentMutationID32012a)[@richterRecurrentMutationID32012a]|[@spinaGeneticsNodalMarginal2016b; @schmitzBurkittLymphomaPathogenesis2012]| |
|
| 32 | -|[KMT2D](KMT2D)|1|[Grande et al](papers/grandeGenomewideDiscoverySomatic2019)[@grandeGenomewideDiscoverySomatic2019]|[@morinFrequentMutationHistonemodifying2011; @deschGenotypingCirculatingTumor2020; @beaLandscapeSomaticMutations2013; @rossiCodingGenomeSplenic2012c]| |
|
| 33 | -|[MYC](MYC)|1|[Johnston et al](papers/johnstonCmycHypermutationBurkitt1992)[@johnstonCmycHypermutationBurkitt1992]|[@jalladesExomeSequencingIdentifies2017; @pasqualucciHypermutationMultipleProtooncogenes2001a; @dunsCharacterizationDLBCLPMBL2021b]| |
|
| 31 | +|[ID3](ID3)|1|[Richter et al](papers/richterRecurrentMutationID32012a)[@richterRecurrentMutationID32012a]|[@schmitzBurkittLymphomaPathogenesis2012; @spinaGeneticsNodalMarginal2016b]| |
|
| 32 | +|[KMT2D](KMT2D)|1|[Grande et al](papers/grandeGenomewideDiscoverySomatic2019)[@grandeGenomewideDiscoverySomatic2019]|[@beaLandscapeSomaticMutations2013; @morinFrequentMutationHistonemodifying2011; @deschGenotypingCirculatingTumor2020; @rossiCodingGenomeSplenic2012c]| |
|
| 33 | +|[MYC](MYC)|1|[Johnston et al](papers/johnstonCmycHypermutationBurkitt1992)[@johnstonCmycHypermutationBurkitt1992]|[@jalladesExomeSequencingIdentifies2017; @dunsCharacterizationDLBCLPMBL2021b; @pasqualucciHypermutationMultipleProtooncogenes2001a]| |
|
| 34 | 34 | |[P2RY8](P2RY8)|1|[Muppidi et al](papers/muppidiLossSignalingGa132014b)[@muppidiLossSignalingGa132014b]|[@lohrDiscoveryPrioritizationSomatic2012a]| |
| 35 | 35 | |[PHF6](PHF6)|1|[Thomas et al](papers/thomasGeneticSubgroupsInform2023)[@thomasGeneticSubgroupsInform2023]|[@reddyGeneticFunctionalDrivers2017]| |
| 36 | -|[PTEN](PTEN)|1|[Love et al](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|| |
|
| 36 | +|[PTEN](PTEN)|1|[Love et al](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|[@reddyGeneticFunctionalDrivers2017]| |
|
| 37 | 37 | |[RFX7](RFX7)|1|[Grande et al](papers/grandeGenomewideDiscoverySomatic2019)[@grandeGenomewideDiscoverySomatic2019]|| |
| 38 | 38 | |[RHOA](RHOA)|1|[Richter et al](papers/richterRecurrentMutationID32012a)[@richterRecurrentMutationID32012a]|[@zhangGeneticHeterogeneityDiffuse2013]| |
| 39 | -|[SIN3A](SIN3A)|1|[Grande et al](papers/grandeGenomewideDiscoverySomatic2019)[@grandeGenomewideDiscoverySomatic2019]|[@rossiCodingGenomeSplenic2012c]| |
|
| 40 | -|[SMARCA4](SMARCA4)|1|[Richter et al](papers/richterRecurrentMutationID32012a)[@richterRecurrentMutationID32012a]|[@krysiakRecurrentSomaticMutations2017b; @nadeuGenomicEpigenomicInsights2020b; @lohrDiscoveryPrioritizationSomatic2012a]| |
|
| 39 | +|[SIN3A](SIN3A)|1|[Grande et al](papers/grandeGenomewideDiscoverySomatic2019)[@grandeGenomewideDiscoverySomatic2019]|[@rossiCodingGenomeSplenic2012c; @chapuyMolecularSubtypesDiffuse2018b]| |
|
| 40 | +|[SMARCA4](SMARCA4)|1|[Richter et al](papers/richterRecurrentMutationID32012a)[@richterRecurrentMutationID32012a]|[@lohrDiscoveryPrioritizationSomatic2012a; @nadeuGenomicEpigenomicInsights2020b; @krysiakRecurrentSomaticMutations2017b]| |
|
| 41 | 41 | |[TCF3](TCF3)|1|[Schmitz et al](papers/schmitzBurkittLymphomaPathogenesis2012)[@schmitzBurkittLymphomaPathogenesis2012]|| |
| 42 | -|[TCL1A](TCL1A)|1|[Grande et al](papers/grandeGenomewideDiscoverySomatic2019)[@grandeGenomewideDiscoverySomatic2019]|| |
|
| 42 | +|[TCL1A](TCL1A)|1|[Grande et al](papers/grandeGenomewideDiscoverySomatic2019)[@grandeGenomewideDiscoverySomatic2019]|[@reddyGeneticFunctionalDrivers2017]| |
|
| 43 | 43 | |[TFAP4](TFAP4)|1|[Grande et al](papers/grandeGenomewideDiscoverySomatic2019)[@grandeGenomewideDiscoverySomatic2019]|| |
| 44 | -|[TP53](TP53)|1|[Wilda et al](papers/wildaInactivationARFMDM2p53Pathway2004)[@wildaInactivationARFMDM2p53Pathway2004]|[@morinFrequentMutationHistonemodifying2011; @beaLandscapeSomaticMutations2013; @tiacciPervasiveMutationsJAKSTAT2018b; @rossiCodingGenomeSplenic2012c; @lohrDiscoveryPrioritizationSomatic2012a]| |
|
| 44 | +|[TP53](TP53)|1|[Wilda et al](papers/wildaInactivationARFMDM2p53Pathway2004)[@wildaInactivationARFMDM2p53Pathway2004]|[@lohrDiscoveryPrioritizationSomatic2012a; @rossiCodingGenomeSplenic2012c; @tiacciPervasiveMutationsJAKSTAT2018b; @morinFrequentMutationHistonemodifying2011; @beaLandscapeSomaticMutations2013]| |
|
| 45 | 45 | |[USP7](USP7)|1|[Grande et al](papers/grandeGenomewideDiscoverySomatic2019)[@grandeGenomewideDiscoverySomatic2019]|| |
| 46 | -|[WNK1](WNK1)|1|[Thomas et al](papers/thomasGeneticSubgroupsInform2023)[@thomasGeneticSubgroupsInform2023]|[@jalladesExomeSequencingIdentifies2017; @hubschmannMutationalMechanismsShaping2021b]| |
|
| 46 | +|[WNK1](WNK1)|1|[Thomas et al](papers/thomasGeneticSubgroupsInform2023)[@thomasGeneticSubgroupsInform2023]|[@hubschmannMutationalMechanismsShaping2021b; @jalladesExomeSequencingIdentifies2017]| |
|
| 47 | 47 | |
| 48 | 48 | ## Tier 2 BL genes |
| 49 | 49 | |
| ... | ... | @@ -56,20 +56,20 @@ link-citations: true |
| 56 | 56 | |[AGO4](AGO4)|2|[Burkhardt et al](papers/burkhardtClinicalRelevanceMolecular2022b)[@burkhardtClinicalRelevanceMolecular2022b]|| |
| 57 | 57 | |[ARHGEF1](ARHGEF1)|2|[Muppidi et al](papers/muppidiLossSignalingGa132014b)[@muppidiLossSignalingGa132014b]|| |
| 58 | 58 | |[BACH2](BACH2)|2|[Grande et al](papers/grandeGenomewideDiscoverySomatic2019)[@grandeGenomewideDiscoverySomatic2019]|| |
| 59 | -|[BCL2](BCL2)|2|[Burkhardt et al](papers/burkhardtClinicalRelevanceMolecular2022b)[@burkhardtClinicalRelevanceMolecular2022b]|[@tanakaFrequentIncidenceSomatic1992; @sarkozyMutationalLandscapeGray2021a; @morinFrequentMutationHistonemodifying2011]| |
|
| 59 | +|[BCL2](BCL2)|2|[Burkhardt et al](papers/burkhardtClinicalRelevanceMolecular2022b)[@burkhardtClinicalRelevanceMolecular2022b]|[@morinFrequentMutationHistonemodifying2011; @tanakaFrequentIncidenceSomatic1992; @sarkozyMutationalLandscapeGray2021a]| |
|
| 60 | 60 | |[BCL6](BCL6)|2|[Love et al](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|[@morinFrequentMutationHistonemodifying2011]| |
| 61 | 61 | |[BTG1](BTG1)|2|[Burkhardt et al](papers/burkhardtClinicalRelevanceMolecular2022b)[@burkhardtClinicalRelevanceMolecular2022b]|[@morinFrequentMutationHistonemodifying2011; @sarkozyMutationalLandscapeGray2021a]| |
| 62 | 62 | |[C16orf48](C16orf48)|2|[Schmitz et al](papers/schmitzBurkittLymphomaPathogenesis2012)[@schmitzBurkittLymphomaPathogenesis2012]|| |
| 63 | 63 | |[CARD4](CARD4)|2|[Love et al](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|| |
| 64 | 64 | |[CCNF](CCNF)|2|[Abate et al](papers/abateDistinctViralMutational2015a)[@abateDistinctViralMutational2015a]|[@zhangGeneticHeterogeneityDiffuse2013]| |
| 65 | 65 | |[CD79A](CD79A)|2|[Burkhardt et al](papers/burkhardtClinicalRelevanceMolecular2022b)[@burkhardtClinicalRelevanceMolecular2022b]|[@rossiCodingGenomeSplenic2012c]| |
| 66 | -|[CD83](CD83)|2|[Panea et al](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|[@dunsCharacterizationDLBCLPMBL2021b; @russler-germainMutationsAssociatedProgression2023b; @morinMutationalStructuralAnalysis2013]| |
|
| 66 | +|[CD83](CD83)|2|[Panea et al](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|[@russler-germainMutationsAssociatedProgression2023b; @dunsCharacterizationDLBCLPMBL2021b; @morinMutationalStructuralAnalysis2013]| |
|
| 67 | 67 | |[CDC73](CDC73)|2|[Love et al](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|[@reddyGeneticFunctionalDrivers2017]| |
| 68 | -|[CDKN2A](CDKN2A)|2|[Grande et al](papers/grandeGenomewideDiscoverySomatic2019)[@grandeGenomewideDiscoverySomatic2019]|[@morinMutationalStructuralAnalysis2013; @spinaGeneticsNodalMarginal2016b]| |
|
| 68 | +|[CDKN2A](CDKN2A)|2|[Grande et al](papers/grandeGenomewideDiscoverySomatic2019)[@grandeGenomewideDiscoverySomatic2019]|[@spinaGeneticsNodalMarginal2016b; @morinMutationalStructuralAnalysis2013]| |
|
| 69 | 69 | |[CDKN2C](CDKN2C)|2|[Thomas et al](papers/thomasGeneticSubgroupsInform2023)[@thomasGeneticSubgroupsInform2023]|| |
| 70 | 70 | |[CHD4](CHD4)|2|[Burkhardt et al](papers/burkhardtClinicalRelevanceMolecular2022b)[@burkhardtClinicalRelevanceMolecular2022b]|| |
| 71 | 71 | |[CPXM2](CPXM2)|2|[Burkhardt et al](papers/burkhardtClinicalRelevanceMolecular2022b)[@burkhardtClinicalRelevanceMolecular2022b]|| |
| 72 | -|[CREBBP](CREBBP)|2|[Love et al](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|[@dunsCharacterizationDLBCLPMBL2021b; @pasqualucciInactivatingMutationsAcetyltransferase2011a; @parryWholeExomeSequencing2013]| |
|
| 72 | +|[CREBBP](CREBBP)|2|[Love et al](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|[@parryWholeExomeSequencing2013; @pasqualucciInactivatingMutationsAcetyltransferase2011a; @dunsCharacterizationDLBCLPMBL2021b]| |
|
| 73 | 73 | |[CXCR4](CXCR4)|2|[Panea et al](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|[@krysiakRecurrentSomaticMutations2017b; @khodabakhshiRecurrentTargetsAberrant2012]| |
| 74 | 74 | |[DHCR7](DHCR7)|2|[Schmitz et al](papers/schmitzBurkittLymphomaPathogenesis2012)[@schmitzBurkittLymphomaPathogenesis2012]|| |
| 75 | 75 | |[E2F2](E2F2)|2|[Burkhardt et al](papers/burkhardtClinicalRelevanceMolecular2022b)[@burkhardtClinicalRelevanceMolecular2022b]|| |
| ... | ... | @@ -83,28 +83,28 @@ link-citations: true |
| 83 | 83 | |[FLYWCH1](FLYWCH1)|2|[Schmitz et al](papers/schmitzBurkittLymphomaPathogenesis2012)[@schmitzBurkittLymphomaPathogenesis2012]|| |
| 84 | 84 | |[GGTLA4](GGTLA4)|2|[Love et al](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|| |
| 85 | 85 | |[GTSE1](GTSE1)|2|[Schmitz et al](papers/schmitzBurkittLymphomaPathogenesis2012)[@schmitzBurkittLymphomaPathogenesis2012]|| |
| 86 | -|[HIST1H1E](HIST1H1E)|2|[Grande et al](papers/grandeGenomewideDiscoverySomatic2019)[@grandeGenomewideDiscoverySomatic2019]|[@reichelFlowSortingExome2015a; @krysiakRecurrentSomaticMutations2017b; @lohrDiscoveryPrioritizationSomatic2012a]| |
|
| 86 | +|[HIST1H1E](HIST1H1E)|2|[Grande et al](papers/grandeGenomewideDiscoverySomatic2019)[@grandeGenomewideDiscoverySomatic2019]|[@lohrDiscoveryPrioritizationSomatic2012a; @krysiakRecurrentSomaticMutations2017b; @reichelFlowSortingExome2015a]| |
|
| 87 | 87 | |[HIST1H3D](HIST1H3D)|2|[Panea et al](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|| |
| 88 | 88 | |[HIST1H3I](HIST1H3I)|2|[Panea et al](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|[@krysiakRecurrentSomaticMutations2017b]| |
| 89 | 89 | |[HIST1H4J](HIST1H4J)|2|[Panea et al](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|[@mottokIntegrativeGenomicAnalysis2019b]| |
| 90 | 90 | |[HLA-DQB1](HLA-DQB1)|2|[Burkhardt et al](papers/burkhardtClinicalRelevanceMolecular2022b)[@burkhardtClinicalRelevanceMolecular2022b]|| |
| 91 | -|[IGLL5](IGLL5)|2|[Panea et al](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|[@russler-germainMutationsAssociatedProgression2023b; @deschGenotypingCirculatingTumor2020]| |
|
| 91 | +|[IGLL5](IGLL5)|2|[Panea et al](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|[@deschGenotypingCirculatingTumor2020; @russler-germainMutationsAssociatedProgression2023b; @chapuyMolecularSubtypesDiffuse2018b]| |
|
| 92 | 92 | |[IKZF3](IKZF3)|2|[Panea et al](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|[@morinMutationalStructuralAnalysis2013]| |
| 93 | -|[IRF8](IRF8)|2|[Panea et al](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|[@morinFrequentMutationHistonemodifying2011; @mottokIntegrativeGenomicAnalysis2019b]| |
|
| 93 | +|[IRF8](IRF8)|2|[Panea et al](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|[@mottokIntegrativeGenomicAnalysis2019b; @morinFrequentMutationHistonemodifying2011]| |
|
| 94 | 94 | |[KANK2](KANK2)|2|[Schmitz et al](papers/schmitzBurkittLymphomaPathogenesis2012)[@schmitzBurkittLymphomaPathogenesis2012]|| |
| 95 | 95 | |[KLHL26](KLHL26)|2|[Burkhardt et al](papers/burkhardtClinicalRelevanceMolecular2022b)[@burkhardtClinicalRelevanceMolecular2022b]|| |
| 96 | -|[KMT2C](KMT2C)|2|[Zhou et al](papers/zhouSporadicEndemicBurkitt2019)[@zhouSporadicEndemicBurkitt2019]|[@zhangGeneticHeterogeneityDiffuse2013; @zhangGenomicLandscapeMantle2014; @sarkozyMutationalLandscapeGray2021a]| |
|
| 96 | +|[KMT2C](KMT2C)|2|[Zhou et al](papers/zhouSporadicEndemicBurkitt2019)[@zhouSporadicEndemicBurkitt2019]|[@zhangGenomicLandscapeMantle2014; @sarkozyMutationalLandscapeGray2021a; @zhangGeneticHeterogeneityDiffuse2013]| |
|
| 97 | 97 | |[MCL1](MCL1)|2|[Panea et al](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|[@dunsCharacterizationDLBCLPMBL2021b; @reddyGeneticFunctionalDrivers2017]| |
| 98 | 98 | |[MIR142](MIR142)|2|[Grande et al](papers/grandeGenomewideDiscoverySomatic2019)[@grandeGenomewideDiscoverySomatic2019]|[@kwanhianMicroRNA142Mutated202012b]| |
| 99 | 99 | |[MKI67](MKI67)|2|[Schmitz et al](papers/schmitzBurkittLymphomaPathogenesis2012)[@schmitzBurkittLymphomaPathogenesis2012]|[@russler-germainMutationsAssociatedProgression2023b]| |
| 100 | 100 | |[MYO18A](MYO18A)|2|[Schmitz et al](papers/schmitzBurkittLymphomaPathogenesis2012)[@schmitzBurkittLymphomaPathogenesis2012]|| |
| 101 | 101 | |[NBEAL1](NBEAL1)|2|[Love et al](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|| |
| 102 | -|[NCOR2](NCOR2)|2|[Schmitz et al](papers/schmitzBurkittLymphomaPathogenesis2012)[@schmitzBurkittLymphomaPathogenesis2012]|[@sarkozyMutationalLandscapeGray2021a; @spinaGeneticsNodalMarginal2016b]| |
|
| 102 | +|[NCOR2](NCOR2)|2|[Schmitz et al](papers/schmitzBurkittLymphomaPathogenesis2012)[@schmitzBurkittLymphomaPathogenesis2012]|[@spinaGeneticsNodalMarginal2016b; @sarkozyMutationalLandscapeGray2021a]| |
|
| 103 | 103 | |[NOA1](NOA1)|2|[Burkhardt et al](papers/burkhardtClinicalRelevanceMolecular2022b)[@burkhardtClinicalRelevanceMolecular2022b]|| |
| 104 | 104 | |[P2RY2](P2RY2)|2|[Love et al](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|| |
| 105 | 105 | |[PCBP1](PCBP1)|2|[Schmitz et al](papers/schmitzBurkittLymphomaPathogenesis2012)[@schmitzBurkittLymphomaPathogenesis2012]|| |
| 106 | 106 | |[PDCD11](PDCD11)|2|[Schmitz et al](papers/schmitzBurkittLymphomaPathogenesis2012)[@schmitzBurkittLymphomaPathogenesis2012]|| |
| 107 | -|[PIM1](PIM1)|2|[Burkhardt et al](papers/burkhardtClinicalRelevanceMolecular2022b)[@burkhardtClinicalRelevanceMolecular2022b]|[@dunsCharacterizationDLBCLPMBL2021b; @pasqualucciHypermutationMultipleProtooncogenes2001a]| |
|
| 107 | +|[PIM1](PIM1)|2|[Burkhardt et al](papers/burkhardtClinicalRelevanceMolecular2022b)[@burkhardtClinicalRelevanceMolecular2022b]|[@pasqualucciHypermutationMultipleProtooncogenes2001a; @dunsCharacterizationDLBCLPMBL2021b]| |
|
| 108 | 108 | |[PLCG2](PLCG2)|2|[Panea et al](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|[@fanComprehensiveCharacterizationDriver2020b]| |
| 109 | 109 | |[PPP6R2](PPP6R2)|2|[Burkhardt et al](papers/burkhardtClinicalRelevanceMolecular2022b)[@burkhardtClinicalRelevanceMolecular2022b]|| |
| 110 | 110 | |[PREX1](PREX1)|2|[Burkhardt et al](papers/burkhardtClinicalRelevanceMolecular2022b)[@burkhardtClinicalRelevanceMolecular2022b]|| |
| ... | ... | @@ -124,7 +124,7 @@ link-citations: true |
| 124 | 124 | |[YY1AP1](YY1AP1)|2|[Schmitz et al](papers/schmitzBurkittLymphomaPathogenesis2012)[@schmitzBurkittLymphomaPathogenesis2012]|| |
| 125 | 125 | |[ZAN](ZAN)|2|[Burkhardt et al](papers/burkhardtClinicalRelevanceMolecular2022b)[@burkhardtClinicalRelevanceMolecular2022b]|| |
| 126 | 126 | |[ZBTB7A](ZBTB7A)|2|[Burkhardt et al](papers/burkhardtClinicalRelevanceMolecular2022b)[@burkhardtClinicalRelevanceMolecular2022b]|[@reddyGeneticFunctionalDrivers2017]| |
| 127 | -|[ZFP36L1](ZFP36L1)|2|[Panea et al](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|[@morinFrequentMutationHistonemodifying2011; @reichelFlowSortingExome2015a]| |
|
| 127 | +|[ZFP36L1](ZFP36L1)|2|[Panea et al](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|[@reichelFlowSortingExome2015a; @morinFrequentMutationHistonemodifying2011]| |
|
| 128 | 128 | |[ZNF85](ZNF85)|2|[Burkhardt et al](papers/burkhardtClinicalRelevanceMolecular2022b)[@burkhardtClinicalRelevanceMolecular2022b]|| |
| 129 | 129 | |
| 130 | 130 | ## Tier 3 BL genes |
| ... | ... | @@ -133,76 +133,76 @@ link-citations: true |
| 133 | 133 | |
| 134 | 134 | |Gene|Tier| First BL evidence | Other entities | |
| 135 | 135 | |:-:|:-:|:--|:-| |
| 136 | -|[ACAD9](ACAD9)|2-F|[Love et al](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|| |
|
| 137 | -|[ACE](ACE)|2-F|[Love et al](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|[@zhangGeneticHeterogeneityDiffuse2013]| |
|
| 138 | -|[ALPK2](ALPK2)|2-F|[Panea et al](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|| |
|
| 139 | -|[ATP2C2](ATP2C2)|2-F|[Love et al](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|| |
|
| 140 | -|[BRAF](BRAF)|2-F|[Love et al](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|[@tiacciBRAFMutationsHairycell2011a]| |
|
| 141 | -|[BRD4](BRD4)|2-F|[Love et al](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|[@zhangGeneticHeterogeneityDiffuse2013]| |
|
| 142 | -|[BTG2](BTG2)|2-F|[Love et al](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|[@morinFrequentMutationHistonemodifying2011]| |
|
| 143 | -|[C6orf27](C6orf27)|2-F|[Love et al](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|| |
|
| 144 | -|[CAD](CAD)|2-F|[Love et al](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|[@zhangGeneticHeterogeneityDiffuse2013]| |
|
| 145 | -|[CCT6B](CCT6B)|2-F|[Love et al](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|| |
|
| 146 | -|[CD79B](CD79B)|2-F|[Panea et al](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|[@morinFrequentMutationHistonemodifying2011]| |
|
| 147 | -|[CDH17](CDH17)|2-F|[Love et al](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|| |
|
| 148 | -|[COL4A2](COL4A2)|2-F|[Love et al](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|| |
|
| 149 | -|[CTCF](CTCF)|2-F|[Panea et al](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|| |
|
| 150 | -|[CYB5D1](CYB5D1)|2-F|[Love et al](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|| |
|
| 151 | -|[CYP4F22](CYP4F22)|2-F|[Love et al](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|| |
|
| 152 | -|[DLGAP1](DLGAP1)|2-F|[Love et al](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|[@zhangGeneticHeterogeneityDiffuse2013]| |
|
| 153 | -|[DNMT1](DNMT1)|2-F|[Panea et al](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|| |
|
| 154 | -|[DTX1](DTX1)|2-F|[Love et al](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|[@rossiCodingGenomeSplenic2012c; @gomezUltraDeepSequencingReveals2023; @zhangGeneticHeterogeneityDiffuse2013]| |
|
| 155 | -|[EIF2C4](EIF2C4)|2-F|[Love et al](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|| |
|
| 156 | -|[EML2](EML2)|2-F|[Love et al](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|| |
|
| 157 | -|[ENTPD3](ENTPD3)|2-F|[Love et al](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|| |
|
| 158 | -|[EPHB2](EPHB2)|2-F|[Love et al](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|| |
|
| 159 | -|[ETS1](ETS1)|2-F|[Panea et al](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|[@morinFrequentMutationHistonemodifying2011]| |
|
| 160 | -|[FAM129B](FAM129B)|2-F|[Love et al](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|| |
|
| 161 | -|[FGFR3](FGFR3)|2-F|[Love et al](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|| |
|
| 162 | -|[FTCD](FTCD)|2-F|[Love et al](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|| |
|
| 163 | -|[FZD3](FZD3)|2-F|[Panea et al](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|| |
|
| 164 | -|[GRIK5](GRIK5)|2-F|[Love et al](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|| |
|
| 165 | -|[HIST1H1C](HIST1H1C)|2-F|[Panea et al](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|[@morinFrequentMutationHistonemodifying2011]| |
|
| 166 | -|[HIST1H2AG](HIST1H2AG)|2-F|[Panea et al](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|[@krysiakRecurrentSomaticMutations2017b; @rossiCodingGenomeSplenic2012c; @morinMutationalStructuralAnalysis2013]| |
|
| 167 | -|[HIST1H2AM](HIST1H2AM)|2-F|[Panea et al](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|[@krysiakRecurrentSomaticMutations2017b]| |
|
| 168 | -|[HIST1H2BK](HIST1H2BK)|2-F|[Panea et al](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|[@rossiCodingGenomeSplenic2012c]| |
|
| 169 | -|[HIST1H3H](HIST1H3H)|2-F|[Panea et al](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|| |
|
| 170 | -|[HIST1H3J](HIST1H3J)|2-F|[Panea et al](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|| |
|
| 171 | -|[ICK](ICK)|2-F|[Love et al](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|| |
|
| 172 | -|[ITPR3](ITPR3)|2-F|[Love et al](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|[@tiacciPervasiveMutationsJAKSTAT2018b]| |
|
| 173 | -|[KCNK10](KCNK10)|2-F|[Panea et al](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|| |
|
| 174 | -|[KIFC3](KIFC3)|2-F|[Love et al](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|| |
|
| 175 | -|[MAP3K6](MAP3K6)|2-F|[Love et al](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|| |
|
| 176 | -|[MME](MME)|2-F|[Panea et al](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|| |
|
| 177 | -|[MTOR](MTOR)|2-F|[Panea et al](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|[@zhangGeneticHeterogeneityDiffuse2013]| |
|
| 178 | -|[MYH10](MYH10)|2-F|[Love et al](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|| |
|
| 179 | -|[NOTCH1](NOTCH1)|2-F|[Love et al](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|[@pasqualucciAnalysisCodingGenome2011; @rossiCodingGenomeSplenic2012c; @beaLandscapeSomaticMutations2013]| |
|
| 180 | -|[NRXN2](NRXN2)|2-F|[Love et al](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|[@zhangGeneticHeterogeneityDiffuse2013]| |
|
| 181 | -|[PABPC4L](PABPC4L)|2-F|[Panea et al](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|| |
|
| 182 | -|[PC](PC)|2-F|[Love et al](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|| |
|
| 183 | -|[PCDHA11](PCDHA11)|2-F|[Panea et al](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|| |
|
| 184 | -|[PDZRN3](PDZRN3)|2-F|[Panea et al](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|[@zhangGeneticHeterogeneityDiffuse2013]| |
|
| 185 | -|[PIK3R1](PIK3R1)|2-F|[Panea et al](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|[@zhangGeneticHeterogeneityDiffuse2013]| |
|
| 186 | -|[POLRMT](POLRMT)|2-F|[Love et al](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|| |
|
| 187 | -|[POR](POR)|2-F|[Love et al](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|| |
|
| 188 | -|[PRSS22](PRSS22)|2-F|[Love et al](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|| |
|
| 189 | -|[PTPRN](PTPRN)|2-F|[Love et al](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|| |
|
| 190 | -|[PXDNL](PXDNL)|2-F|[Panea et al](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|| |
|
| 191 | -|[RBP3](RBP3)|2-F|[Love et al](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|| |
|
| 192 | -|[RET](RET)|2-F|[Love et al](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|[@fanComprehensiveCharacterizationDriver2020b]| |
|
| 193 | -|[SALL3](SALL3)|2-F|[Love et al](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|[@zhangGenomicLandscapeMantle2014]| |
|
| 194 | -|[SAPS2](SAPS2)|2-F|[Love et al](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|| |
|
| 195 | -|[SBF1](SBF1)|2-F|[Love et al](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|| |
|
| 196 | -|[SF3B1](SF3B1)|2-F|[Love et al](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|| |
|
| 197 | -|[SHANK1](SHANK1)|2-F|[Love et al](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|| |
|
| 198 | -|[SLC29A2](SLC29A2)|2-F|[Love et al](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|| |
|
| 199 | -|[SNTB2](SNTB2)|2-F|[Panea et al](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|| |
|
| 200 | -|[SYNGAP1](SYNGAP1)|2-F|[Love et al](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|| |
|
| 201 | -|[TBC1D9B](TBC1D9B)|2-F|[Love et al](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|| |
|
| 202 | -|[TIGD6](TIGD6)|2-F|[Love et al](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|| |
|
| 203 | -|[TPST2](TPST2)|2-F|[Love et al](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|| |
|
| 204 | -|[WDR7](WDR7)|2-F|[Panea et al](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|| |
|
| 205 | -|[ZNF229](ZNF229)|2-F|[Love et al](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|| |
|
| 136 | +|[ACAD9](ACAD9)|3|[Love et al](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|| |
|
| 137 | +|[ACE](ACE)|3|[Love et al](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|[@zhangGeneticHeterogeneityDiffuse2013]| |
|
| 138 | +|[ALPK2](ALPK2)|3|[Panea et al](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|| |
|
| 139 | +|[ATP2C2](ATP2C2)|3|[Love et al](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|| |
|
| 140 | +|[BRAF](BRAF)|3|[Love et al](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|[@tiacciBRAFMutationsHairycell2011a]| |
|
| 141 | +|[BRD4](BRD4)|3|[Love et al](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|[@zhangGeneticHeterogeneityDiffuse2013]| |
|
| 142 | +|[BTG2](BTG2)|3|[Love et al](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|[@morinFrequentMutationHistonemodifying2011]| |
|
| 143 | +|[C6orf27](C6orf27)|3|[Love et al](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|| |
|
| 144 | +|[CAD](CAD)|3|[Love et al](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|[@zhangGeneticHeterogeneityDiffuse2013]| |
|
| 145 | +|[CCT6B](CCT6B)|3|[Love et al](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|| |
|
| 146 | +|[CD79B](CD79B)|3|[Panea et al](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|[@morinFrequentMutationHistonemodifying2011]| |
|
| 147 | +|[CDH17](CDH17)|3|[Love et al](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|| |
|
| 148 | +|[COL4A2](COL4A2)|3|[Love et al](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|| |
|
| 149 | +|[CTCF](CTCF)|3|[Panea et al](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|| |
|
| 150 | +|[CYB5D1](CYB5D1)|3|[Love et al](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|| |
|
| 151 | +|[CYP4F22](CYP4F22)|3|[Love et al](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|| |
|
| 152 | +|[DLGAP1](DLGAP1)|3|[Love et al](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|[@zhangGeneticHeterogeneityDiffuse2013]| |
|
| 153 | +|[DNMT1](DNMT1)|3|[Panea et al](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|| |
|
| 154 | +|[DTX1](DTX1)|3|[Love et al](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|[@gomezUltraDeepSequencingReveals2023; @rossiCodingGenomeSplenic2012c; @zhangGeneticHeterogeneityDiffuse2013]| |
|
| 155 | +|[EIF2C4](EIF2C4)|3|[Love et al](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|| |
|
| 156 | +|[EML2](EML2)|3|[Love et al](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|| |
|
| 157 | +|[ENTPD3](ENTPD3)|3|[Love et al](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|| |
|
| 158 | +|[EPHB2](EPHB2)|3|[Love et al](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|| |
|
| 159 | +|[ETS1](ETS1)|3|[Panea et al](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|[@morinFrequentMutationHistonemodifying2011]| |
|
| 160 | +|[FAM129B](FAM129B)|3|[Love et al](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|| |
|
| 161 | +|[FGFR3](FGFR3)|3|[Love et al](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|| |
|
| 162 | +|[FTCD](FTCD)|3|[Love et al](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|| |
|
| 163 | +|[FZD3](FZD3)|3|[Panea et al](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|| |
|
| 164 | +|[GRIK5](GRIK5)|3|[Love et al](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|| |
|
| 165 | +|[HIST1H1C](HIST1H1C)|3|[Panea et al](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|[@morinFrequentMutationHistonemodifying2011]| |
|
| 166 | +|[HIST1H2AG](HIST1H2AG)|3|[Panea et al](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|[@krysiakRecurrentSomaticMutations2017b; @rossiCodingGenomeSplenic2012c; @morinMutationalStructuralAnalysis2013]| |
|
| 167 | +|[HIST1H2AM](HIST1H2AM)|3|[Panea et al](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|[@chapuyMolecularSubtypesDiffuse2018b; @krysiakRecurrentSomaticMutations2017b]| |
|
| 168 | +|[HIST1H2BK](HIST1H2BK)|3|[Panea et al](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|[@zhangGeneticHeterogeneityDiffuse2013; @rossiCodingGenomeSplenic2012c]| |
|
| 169 | +|[HIST1H3H](HIST1H3H)|3|[Panea et al](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|| |
|
| 170 | +|[HIST1H3J](HIST1H3J)|3|[Panea et al](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|| |
|
| 171 | +|[ICK](ICK)|3|[Love et al](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|| |
|
| 172 | +|[ITPR3](ITPR3)|3|[Love et al](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|[@tiacciPervasiveMutationsJAKSTAT2018b]| |
|
| 173 | +|[KCNK10](KCNK10)|3|[Panea et al](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|| |
|
| 174 | +|[KIFC3](KIFC3)|3|[Love et al](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|| |
|
| 175 | +|[MAP3K6](MAP3K6)|3|[Love et al](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|| |
|
| 176 | +|[MME](MME)|3|[Panea et al](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|| |
|
| 177 | +|[MTOR](MTOR)|3|[Panea et al](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|[@zhangGeneticHeterogeneityDiffuse2013]| |
|
| 178 | +|[MYH10](MYH10)|3|[Love et al](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|| |
|
| 179 | +|[NOTCH1](NOTCH1)|3|[Love et al](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|[@beaLandscapeSomaticMutations2013; @pasqualucciAnalysisCodingGenome2011; @rossiCodingGenomeSplenic2012c]| |
|
| 180 | +|[NRXN2](NRXN2)|3|[Love et al](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|[@zhangGeneticHeterogeneityDiffuse2013]| |
|
| 181 | +|[PABPC4L](PABPC4L)|3|[Panea et al](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|| |
|
| 182 | +|[PC](PC)|3|[Love et al](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|| |
|
| 183 | +|[PCDHA11](PCDHA11)|3|[Panea et al](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|| |
|
| 184 | +|[PDZRN3](PDZRN3)|3|[Panea et al](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|[@zhangGeneticHeterogeneityDiffuse2013]| |
|
| 185 | +|[PIK3R1](PIK3R1)|3|[Panea et al](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|[@zhangGeneticHeterogeneityDiffuse2013]| |
|
| 186 | +|[POLRMT](POLRMT)|3|[Love et al](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|| |
|
| 187 | +|[POR](POR)|3|[Love et al](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|| |
|
| 188 | +|[PRSS22](PRSS22)|3|[Love et al](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|| |
|
| 189 | +|[PTPRN](PTPRN)|3|[Love et al](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|| |
|
| 190 | +|[PXDNL](PXDNL)|3|[Panea et al](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|| |
|
| 191 | +|[RBP3](RBP3)|3|[Love et al](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|| |
|
| 192 | +|[RET](RET)|3|[Love et al](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|[@fanComprehensiveCharacterizationDriver2020b]| |
|
| 193 | +|[SALL3](SALL3)|3|[Love et al](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|[@zhangGenomicLandscapeMantle2014]| |
|
| 194 | +|[SAPS2](SAPS2)|3|[Love et al](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|| |
|
| 195 | +|[SBF1](SBF1)|3|[Love et al](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|| |
|
| 196 | +|[SF3B1](SF3B1)|3|[Love et al](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|[@reddyGeneticFunctionalDrivers2017]| |
|
| 197 | +|[SHANK1](SHANK1)|3|[Love et al](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|| |
|
| 198 | +|[SLC29A2](SLC29A2)|3|[Love et al](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|| |
|
| 199 | +|[SNTB2](SNTB2)|3|[Panea et al](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|| |
|
| 200 | +|[SYNGAP1](SYNGAP1)|3|[Love et al](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|| |
|
| 201 | +|[TBC1D9B](TBC1D9B)|3|[Love et al](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|| |
|
| 202 | +|[TIGD6](TIGD6)|3|[Love et al](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|| |
|
| 203 | +|[TPST2](TPST2)|3|[Love et al](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|| |
|
| 204 | +|[WDR7](WDR7)|3|[Panea et al](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|| |
|
| 205 | +|[ZNF229](ZNF229)|3|[Love et al](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|| |
|
| 206 | 206 | |
| 207 | 207 | |
| 208 | 208 | # References |
DLBCL_genes.md
| ... | ... | @@ -5,85 +5,9 @@ csl: 'NLM.csl' |
| 5 | 5 | link-citations: true |
| 6 | 6 | --- |
| 7 | 7 | |
| 8 | -## Origins and status of DLBCL genes |
|
| 8 | +## Origins of DLBCL genes |
|
| 9 | 9 | |
| 10 | -```mermaid |
|
| 11 | ---- |
|
| 12 | -config: |
|
| 13 | - sankey: |
|
| 14 | - showValues: false |
|
| 15 | - linkColor: target |
|
| 16 | - width: 750 |
|
| 17 | - height: 800 |
|
| 18 | - nodeAlignment: right |
|
| 19 | ---- |
|
| 20 | -sankey-beta |
|
| 21 | -Fan 2020, Tier 3, 72 |
|
| 22 | -Zhang 2013, Tier 1, 14 |
|
| 23 | -Zhang 2013, Tier 2, 9 |
|
| 24 | -Zhang 2013, Tier 3, 266 |
|
| 25 | -Chapuy 2018, Tier 1, 2 |
|
| 26 | -Chapuy 2018, Tier 2, 10 |
|
| 27 | -Chapuy 2018, Tier 3, 6 |
|
| 28 | -Schmitz 2018, Tier 1, 6 |
|
| 29 | -Schmitz 2018, Tier 2, 9 |
|
| 30 | -Morin 2011, Tier 1, 24 |
|
| 31 | -Morin 2011, Tier 2, 2 |
|
| 32 | -Morin 2016, Tier 1, 2 |
|
| 33 | -Pararajalingam 2020, Tier 2, 2 |
|
| 34 | -Pasqualucci 2011, Tier 1, 2 |
|
| 35 | -Hubschmann 2021, Tier 1, 3 |
|
| 36 | -Hubschmann 2021, Tier 2, 17 |
|
| 37 | -Hubschmann 2021, Tier 3, 3 |
|
| 38 | -Albuquerque 2017, Tier 1, 5 |
|
| 39 | -Albuquerque 2017, Tier 2, 5 |
|
| 40 | -Reddy 2017, Tier 1, 4 |
|
| 41 | -Reddy 2017, Tier 2, 23 |
|
| 42 | -Reddy 2017, Tier 3, 26 |
|
| 43 | -Morin 2013, Tier 1, 9 |
|
| 44 | -Morin 2013, Tier 2, 21 |
|
| 45 | -Morin 2013, Tier 3, 7 |
|
| 46 | -Pasqualucci 2011, Tier 1, 3 |
|
| 47 | -Pasqualucci 2011, Tier 2, 4 |
|
| 48 | -Arthur 2018, Tier 1, 5 |
|
| 49 | -Arthur 2018, Tier 2, 12 |
|
| 50 | -Lohr 2012, Tier 1, 18 |
|
| 51 | -Lohr 2012, Tier 2, 20 |
|
| 52 | -Pasqualucci 2001, Tier 1, 2 |
|
| 53 | -Pasqualucci 2001, Tier 2, 2 |
|
| 54 | -DLBCL genes, DLBCL-exome, 53 |
|
| 55 | -DLBCL-exome, Reddy 2017, 53 |
|
| 56 | -DLBCL genes, DLBCL-WGS, 37 |
|
| 57 | -DLBCL-WGS, Morin 2013, 37 |
|
| 58 | -DLBCL genes, DLBCL-exome, 7 |
|
| 59 | -DLBCL-exome, Pasqualucci 2011, 7 |
|
| 60 | -DLBCL genes, DLBCL-exome, 10 |
|
| 61 | -DLBCL-exome, Albuquerque 2017, 10 |
|
| 62 | -DLBCL genes, DLBCL-WGS, 17 |
|
| 63 | -DLBCL-WGS, Arthur 2018, 17 |
|
| 64 | -DLBCL genes, DLBCL-Sanger, 4 |
|
| 65 | -DLBCL-Sanger, Pasqualucci 2001, 4 |
|
| 66 | -DLBCL genes, DLBCL-exome, 38 |
|
| 67 | -DLBCL-exome, Lohr 2012, 38 |
|
| 68 | -DLBCL genes, DLBCL-exome, 289 |
|
| 69 | -DLBCL-exome, Zhang 2013, 289 |
|
| 70 | -DLBCL genes, DLBCL-exome, 18 |
|
| 71 | -DLBCL-exome, Chapuy 2018, 18 |
|
| 72 | -DLBCL genes, DLBCL-exome, 15 |
|
| 73 | -DLBCL-exome, Schmitz 2018, 15 |
|
| 74 | -DLBCL genes, DLBCL-exome, 72 |
|
| 75 | -DLBCL-exome, Fan 2020, 72 |
|
| 76 | -DLBCL genes, DLBCL-WGS, 23 |
|
| 77 | -DLBCL-WGS, Hubschmann 2021, 23 |
|
| 78 | -DLBCL genes, DLBCL-exome, 2 |
|
| 79 | -DLBCL-exome, Morin 2016, 2 |
|
| 80 | -DLBCL genes, DLBCL-RNA-seq/WGS, 26 |
|
| 81 | -DLBCL-RNA-seq/WGS, Morin 2011, 26 |
|
| 82 | -DLBCL genes, DLBCL-exome, 2 |
|
| 83 | -DLBCL-exome, Pasqualucci 2011, 2 |
|
| 84 | -DLBCL genes, DLBCL-WGS/exome, 2 |
|
| 85 | -DLBCL-WGS/exome, Pararajalingam 2020, 2 |
|
| 86 | -``` |
|
| 10 | + |
|
| 87 | 11 | |
| 88 | 12 | ## Tier 1 DLBCL genes |
| 89 | 13 | |
| ... | ... | @@ -93,70 +17,71 @@ DLBCL-WGS/exome, Pararajalingam 2020, 2 |
| 93 | 17 | |:-:|:-:|:--|:-| |
| 94 | 18 | |[ACTB](ACTB)|1|[Lohr et al](papers/lohrDiscoveryPrioritizationSomatic2012a)[@lohrDiscoveryPrioritizationSomatic2012a]|[@wienandGenomicAnalysesFlowsorted2019b]| |
| 95 | 19 | |[ACTG1](ACTG1)|1|[Hubschmann et al](papers/hubschmannMutationalMechanismsShaping2021b)[@hubschmannMutationalMechanismsShaping2021b]|[@deschGenotypingCirculatingTumor2020; @spinaGeneticsNodalMarginal2016b]| |
| 96 | -|[ARID1A](ARID1A)|1|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|[@rossiCodingGenomeSplenic2012c; @loveGeneticLandscapeMutations2012; @wienandGenomicAnalysesFlowsorted2019b; @krysiakRecurrentSomaticMutations2017b]| |
|
| 20 | +|[ARID1A](ARID1A)|1|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|[@wienandGenomicAnalysesFlowsorted2019b; @loveGeneticLandscapeMutations2012; @krysiakRecurrentSomaticMutations2017b; @rossiCodingGenomeSplenic2012c]| |
|
| 97 | 21 | |[ATM](ATM)|1|[Reddy et al](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|[@braggioGenomicAnalysisMarginal2012; @beaLandscapeSomaticMutations2013]| |
| 98 | 22 | |[B2M](B2M)|1|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]|[@reichelFlowSortingExome2015a; @pararajalingamCodingNoncodingDrivers2020]| |
| 99 | 23 | |[BCL10](BCL10)|1|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]|[@spinaGeneticsNodalMarginal2016b; @russler-germainMutationsAssociatedProgression2023b]| |
| 100 | 24 | |[BCL2](BCL2)|1|[Tanaka et al](papers/tanakaFrequentIncidenceSomatic1992)[@tanakaFrequentIncidenceSomatic1992]|[@burkhardtClinicalRelevanceMolecular2022b; @morinFrequentMutationHistonemodifying2011; @sarkozyMutationalLandscapeGray2021a]| |
| 101 | 25 | |[BCL6](BCL6)|1|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]|[@loveGeneticLandscapeMutations2012]| |
| 102 | -|[BCL7A](BCL7A)|1|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|[@grandeGenomewideDiscoverySomatic2019; @reichelFlowSortingExome2015a; @krysiakRecurrentSomaticMutations2017b]| |
|
| 26 | +|[BCL7A](BCL7A)|1|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|[@grandeGenomewideDiscoverySomatic2019; @krysiakRecurrentSomaticMutations2017b; @reichelFlowSortingExome2015a]| |
|
| 103 | 27 | |[BIRC6](BIRC6)|1|[Reddy et al](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|[@sarkozyMutationalLandscapeGray2021a]| |
| 104 | 28 | |[BRAF](BRAF)|1|[Tiacci et al](papers/tiacciBRAFMutationsHairycell2011a)[@tiacciBRAFMutationsHairycell2011a]|[@loveGeneticLandscapeMutations2012]| |
| 105 | 29 | |[BTG1](BTG1)|1|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]|[@sarkozyMutationalLandscapeGray2021a; @burkhardtClinicalRelevanceMolecular2022b]| |
| 106 | 30 | |[BTG2](BTG2)|1|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]|[@loveGeneticLandscapeMutations2012]| |
| 107 | 31 | |[BTK](BTK)|1|[Albuquerque et al](papers/albuquerqueEnhancingKnowledgeDiscovery2017a)[@albuquerqueEnhancingKnowledgeDiscovery2017a]|[@krysiakRecurrentSomaticMutations2017b]| |
| 108 | -|[CARD11](CARD11)|1|[Lenz et al](papers/lenzOncogenicCARD11Mutations2008)[@lenzOncogenicCARD11Mutations2008]|[@yanBCRTLRSignaling2012a; @morinFrequentMutationHistonemodifying2011; @wuGeneticHeterogeneityPrimary2016]| |
|
| 109 | -|[CCND3](CCND3)|1|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]|[@deschGenotypingCirculatingTumor2020; @jalladesExomeSequencingIdentifies2017; @richterRecurrentMutationID32012a]| |
|
| 32 | +|[CARD11](CARD11)|1|[Lenz et al](papers/lenzOncogenicCARD11Mutations2008)[@lenzOncogenicCARD11Mutations2008]|[@yanBCRTLRSignaling2012a; @wuGeneticHeterogeneityPrimary2016; @morinFrequentMutationHistonemodifying2011]| |
|
| 33 | +|[CCND3](CCND3)|1|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]|[@richterRecurrentMutationID32012a; @jalladesExomeSequencingIdentifies2017; @deschGenotypingCirculatingTumor2020]| |
|
| 110 | 34 | |[CD58](CD58)|1|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]|[@schneiderAlterationsCD58Gene2015a]| |
| 111 | 35 | |[CD70](CD70)|1|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]|[@russler-germainMutationsAssociatedProgression2023b]| |
| 112 | 36 | |[CD79B](CD79B)|1|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]|[@paneaWholeGenomeLandscape2019]| |
| 113 | 37 | |[CD83](CD83)|1|[Morin et al](papers/morinMutationalStructuralAnalysis2013)[@morinMutationalStructuralAnalysis2013]|[@dunsCharacterizationDLBCLPMBL2021b; @paneaWholeGenomeLandscape2019; @russler-germainMutationsAssociatedProgression2023b]| |
| 114 | 38 | |[CDKN2A](CDKN2A)|1|[Morin et al](papers/morinMutationalStructuralAnalysis2013)[@morinMutationalStructuralAnalysis2013]|[@spinaGeneticsNodalMarginal2016b; @grandeGenomewideDiscoverySomatic2019]| |
| 115 | -|[CREBBP](CREBBP)|1|[Pasqualucci et al](papers/pasqualucciInactivatingMutationsAcetyltransferase2011a)[@pasqualucciInactivatingMutationsAcetyltransferase2011a]|[@loveGeneticLandscapeMutations2012; @dunsCharacterizationDLBCLPMBL2021b; @parryWholeExomeSequencing2013]| |
|
| 116 | -|[CXCR4](CXCR4)|1|[Khodabakhshi et al](papers/khodabakhshiRecurrentTargetsAberrant2012)[@khodabakhshiRecurrentTargetsAberrant2012]|[@paneaWholeGenomeLandscape2019; @krysiakRecurrentSomaticMutations2017b]| |
|
| 39 | +|[CREBBP](CREBBP)|1|[Pasqualucci et al](papers/pasqualucciInactivatingMutationsAcetyltransferase2011a)[@pasqualucciInactivatingMutationsAcetyltransferase2011a]|[@loveGeneticLandscapeMutations2012; @parryWholeExomeSequencing2013; @dunsCharacterizationDLBCLPMBL2021b]| |
|
| 40 | +|[CXCR4](CXCR4)|1|[Khodabakhshi et al](papers/khodabakhshiRecurrentTargetsAberrant2012)[@khodabakhshiRecurrentTargetsAberrant2012]|[@krysiakRecurrentSomaticMutations2017b; @paneaWholeGenomeLandscape2019]| |
|
| 117 | 41 | |[CXCR5](CXCR5)|1|[Schmitz et al](papers/schmitzGeneticsPathogenesisDiffuse2018a)[@schmitzGeneticsPathogenesisDiffuse2018a]|[@mottokIntegrativeGenomicAnalysis2019b]| |
| 118 | -|[DDX3X](DDX3X)|1|[Schmitz et al](papers/schmitzGeneticsPathogenesisDiffuse2018a)[@schmitzGeneticsPathogenesisDiffuse2018a]|[@schmitzBurkittLymphomaPathogenesis2012; @mottokIntegrativeGenomicAnalysis2019b]| |
|
| 119 | -|[DTX1](DTX1)|1|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|[@loveGeneticLandscapeMutations2012; @gomezUltraDeepSequencingReveals2023; @rossiCodingGenomeSplenic2012c]| |
|
| 42 | +|[DDX3X](DDX3X)|1|[Reddy et al](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|[@schmitzBurkittLymphomaPathogenesis2012; @mottokIntegrativeGenomicAnalysis2019b]| |
|
| 43 | +|[DTX1](DTX1)|1|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|[@loveGeneticLandscapeMutations2012; @rossiCodingGenomeSplenic2012c; @gomezUltraDeepSequencingReveals2023]| |
|
| 120 | 44 | |[DUSP2](DUSP2)|1|[Lohr et al](papers/lohrDiscoveryPrioritizationSomatic2012a)[@lohrDiscoveryPrioritizationSomatic2012a]|[@dunsCharacterizationDLBCLPMBL2021b]| |
| 121 | -|[EBF1](EBF1)|1|[Bohle et al](papers/bohleRoleEarlyBcell2013)[@bohleRoleEarlyBcell2013]|[@reichelFlowSortingExome2015a; @thomasGeneticSubgroupsInform2023]| |
|
| 45 | +|[EBF1](EBF1)|1|[Bohle et al](papers/bohleRoleEarlyBcell2013)[@bohleRoleEarlyBcell2013]|[@thomasGeneticSubgroupsInform2023; @reichelFlowSortingExome2015a]| |
|
| 122 | 46 | |[EEF1A1](EEF1A1)|1|[Hubschmann et al](papers/hubschmannMutationalMechanismsShaping2021b)[@hubschmannMutationalMechanismsShaping2021b]|[@reichelFlowSortingExome2015a]| |
| 123 | 47 | |[EP300](EP300)|1|[Pasqualucci et al](papers/pasqualucciInactivatingMutationsAcetyltransferase2011a)[@pasqualucciInactivatingMutationsAcetyltransferase2011a]|[@rossiCodingGenomeSplenic2012c]| |
| 124 | 48 | |[ETS1](ETS1)|1|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]|[@paneaWholeGenomeLandscape2019]| |
| 125 | 49 | |[ETV6](ETV6)|1|[Lohr et al](papers/lohrDiscoveryPrioritizationSomatic2012a)[@lohrDiscoveryPrioritizationSomatic2012a]|| |
| 126 | -|[EZH2](EZH2)|1|[Morin et al](papers/morinSomaticMutationsAltering2010a)[@morinSomaticMutationsAltering2010a]|[@mottokIntegrativeGenomicAnalysis2019b; @loveGeneticLandscapeMutations2012]| |
|
| 50 | +|[EZH2](EZH2)|1|[Morin et al](papers/morinSomaticMutationsAltering2010a)[@morinSomaticMutationsAltering2010a]|[@loveGeneticLandscapeMutations2012; @mottokIntegrativeGenomicAnalysis2019b]| |
|
| 127 | 51 | |[FAS](FAS)|1|[Scholl et al](papers/schollMutationsRegionFAS2007)[@schollMutationsRegionFAS2007]|[@spinaGeneticsNodalMarginal2016b]| |
| 128 | -|[FBXO11](FBXO11)|1|[Hubschmann et al](papers/hubschmannMutationalMechanismsShaping2021b)[@hubschmannMutationalMechanismsShaping2021b]|[@richterRecurrentMutationID32012a; @parryWholeExomeSequencing2013]| |
|
| 52 | +|[FBXO11](FBXO11)|1|[Hubschmann et al](papers/hubschmannMutationalMechanismsShaping2021b)[@hubschmannMutationalMechanismsShaping2021b]|[@parryWholeExomeSequencing2013; @richterRecurrentMutationID32012a]| |
|
| 129 | 53 | |[FBXW7](FBXW7)|1|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|| |
| 130 | -|[FOXO1](FOXO1)|1|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]|[@schmitzBurkittLymphomaPathogenesis2012; @dunsCharacterizationDLBCLPMBL2021b]| |
|
| 131 | -|[GNA13](GNA13)|1|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]|[@loveGeneticLandscapeMutations2012; @reichelFlowSortingExome2015a]| |
|
| 54 | +|[FOXO1](FOXO1)|1|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]|[@dunsCharacterizationDLBCLPMBL2021b; @schmitzBurkittLymphomaPathogenesis2012]| |
|
| 55 | +|[GNA13](GNA13)|1|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]|[@reichelFlowSortingExome2015a; @loveGeneticLandscapeMutations2012]| |
|
| 132 | 56 | |[GNAI2](GNAI2)|1|[Morin et al](papers/morinMutationalStructuralAnalysis2013)[@morinMutationalStructuralAnalysis2013]|[@grandeGenomewideDiscoverySomatic2019]| |
| 133 | 57 | |[GRB2](GRB2)|1|[Pasqualucci et al](papers/pasqualucciAnalysisCodingGenome2011)[@pasqualucciAnalysisCodingGenome2011]|| |
| 134 | 58 | |[GRHPR](GRHPR)|1|[Arthur et al](papers/arthurGenomewideDiscoverySomatic2018)[@arthurGenomewideDiscoverySomatic2018]|| |
| 135 | 59 | |[HIST1H1B](HIST1H1B)|1|[Chapuy et al](papers/chapuyMolecularSubtypesDiffuse2018b)[@chapuyMolecularSubtypesDiffuse2018b]|[@sarkozyMutationalLandscapeGray2021a; @krysiakRecurrentSomaticMutations2017b]| |
| 136 | 60 | |[HIST1H1C](HIST1H1C)|1|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]|[@paneaWholeGenomeLandscape2019]| |
| 137 | -|[HIST1H1D](HIST1H1D)|1|[Morin et al](papers/morinMutationalStructuralAnalysis2013)[@morinMutationalStructuralAnalysis2013]|[@jalladesExomeSequencingIdentifies2017; @krysiakRecurrentSomaticMutations2017b]| |
|
| 138 | -|[HIST1H1E](HIST1H1E)|1|[Lohr et al](papers/lohrDiscoveryPrioritizationSomatic2012a)[@lohrDiscoveryPrioritizationSomatic2012a]|[@reichelFlowSortingExome2015a; @krysiakRecurrentSomaticMutations2017b; @grandeGenomewideDiscoverySomatic2019]| |
|
| 61 | +|[HIST1H1D](HIST1H1D)|1|[Morin et al](papers/morinMutationalStructuralAnalysis2013)[@morinMutationalStructuralAnalysis2013]|[@krysiakRecurrentSomaticMutations2017b; @jalladesExomeSequencingIdentifies2017]| |
|
| 62 | +|[HIST1H1E](HIST1H1E)|1|[Lohr et al](papers/lohrDiscoveryPrioritizationSomatic2012a)[@lohrDiscoveryPrioritizationSomatic2012a]|[@reichelFlowSortingExome2015a; @grandeGenomewideDiscoverySomatic2019; @krysiakRecurrentSomaticMutations2017b]| |
|
| 139 | 63 | |[HIST1H2AC](HIST1H2AC)|1|[Morin et al](papers/morinMutationalStructuralAnalysis2013)[@morinMutationalStructuralAnalysis2013]|[@krysiakRecurrentSomaticMutations2017b]| |
| 140 | -|[HIST1H2AM](HIST1H2AM)|1||[@paneaWholeGenomeLandscape2019; @krysiakRecurrentSomaticMutations2017b]| |
|
| 64 | +|[HIST1H2AM](HIST1H2AM)|1|[Chapuy et al](papers/chapuyMolecularSubtypesDiffuse2018b)[@chapuyMolecularSubtypesDiffuse2018b]|[@paneaWholeGenomeLandscape2019; @krysiakRecurrentSomaticMutations2017b]| |
|
| 141 | 65 | |[HIST1H2BC](HIST1H2BC)|1|[Lohr et al](papers/lohrDiscoveryPrioritizationSomatic2012a)[@lohrDiscoveryPrioritizationSomatic2012a]|[@mottokIntegrativeGenomicAnalysis2019b; @krysiakRecurrentSomaticMutations2017b]| |
| 142 | -|[HIST1H2BK](HIST1H2BK)|1||[@rossiCodingGenomeSplenic2012c; @paneaWholeGenomeLandscape2019]| |
|
| 66 | +|[HIST1H2BK](HIST1H2BK)|1|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|[@rossiCodingGenomeSplenic2012c; @paneaWholeGenomeLandscape2019]| |
|
| 143 | 67 | |[HIST1H3B](HIST1H3B)|1|[Lohr et al](papers/lohrDiscoveryPrioritizationSomatic2012a)[@lohrDiscoveryPrioritizationSomatic2012a]|[@reichelFlowSortingExome2015a]| |
| 144 | 68 | |[HIST2H2BE](HIST2H2BE)|1|[Schmitz et al](papers/schmitzGeneticsPathogenesisDiffuse2018a)[@schmitzGeneticsPathogenesisDiffuse2018a]|| |
| 145 | 69 | |[HLA-A](HLA-A)|1|[Lohr et al](papers/lohrDiscoveryPrioritizationSomatic2012a)[@lohrDiscoveryPrioritizationSomatic2012a]|[@deschGenotypingCirculatingTumor2020]| |
| 146 | 70 | |[HLA-B](HLA-B)|1|[Lohr et al](papers/lohrDiscoveryPrioritizationSomatic2012a)[@lohrDiscoveryPrioritizationSomatic2012a]|[@wienandGenomicAnalysesFlowsorted2019b]| |
| 147 | -|[HLA-C](HLA-C)|1||[@gomezUltraDeepSequencingReveals2023]| |
|
| 148 | -|[HLA-DMB](HLA-DMB)|1||| |
|
| 71 | +|[HLA-C](HLA-C)|1|[Chapuy et al](papers/chapuyMolecularSubtypesDiffuse2018b)[@chapuyMolecularSubtypesDiffuse2018b]|[@gomezUltraDeepSequencingReveals2023]| |
|
| 72 | +|[HLA-DMB](HLA-DMB)|1|[Hubschmann et al](papers/hubschmannMutationalMechanismsShaping2021b)[@hubschmannMutationalMechanismsShaping2021b]|| |
|
| 149 | 73 | |[HNRNPU](HNRNPU)|1|[Reddy et al](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|[@paneaWholeGenomeLandscape2019]| |
| 150 | -|[HVCN1](HVCN1)|1||[@krysiakRecurrentSomaticMutations2017b]| |
|
| 74 | +|[HVCN1](HVCN1)|1|[Chapuy et al](papers/chapuyMolecularSubtypesDiffuse2018b)[@chapuyMolecularSubtypesDiffuse2018b]|[@krysiakRecurrentSomaticMutations2017b]| |
|
| 151 | 75 | |[IKZF3](IKZF3)|1|[Morin et al](papers/morinMutationalStructuralAnalysis2013)[@morinMutationalStructuralAnalysis2013]|[@paneaWholeGenomeLandscape2019]| |
| 152 | 76 | |[IL4R](IL4R)|1|[Duns et al](papers/dunsCharacterizationDLBCLPMBL2021b)[@dunsCharacterizationDLBCLPMBL2021b]|[@viganoSomaticIL4RMutations2018b]| |
| 153 | 77 | |[IRF4](IRF4)|1|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]|[@mottokIntegrativeGenomicAnalysis2019b]| |
| 154 | -|[IRF8](IRF8)|1|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]|[@paneaWholeGenomeLandscape2019; @mottokIntegrativeGenomicAnalysis2019b]| |
|
| 78 | +|[IRF8](IRF8)|1|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]|[@mottokIntegrativeGenomicAnalysis2019b; @paneaWholeGenomeLandscape2019]| |
|
| 155 | 79 | |[ITPKB](ITPKB)|1|[Schmitz et al](papers/schmitzGeneticsPathogenesisDiffuse2018a)[@schmitzGeneticsPathogenesisDiffuse2018a]|[@reichelFlowSortingExome2015a]| |
| 156 | -|[KLF2](KLF2)|1|[Pasqualucci et al](papers/pasqualucciAnalysisCodingGenome2011)[@pasqualucciAnalysisCodingGenome2011]|[@jalladesExomeSequencingIdentifies2017; @deschGenotypingCirculatingTumor2020]| |
|
| 80 | +|[KLF2](KLF2)|1|[Pasqualucci et al](papers/pasqualucciAnalysisCodingGenome2011)[@pasqualucciAnalysisCodingGenome2011]|[@deschGenotypingCirculatingTumor2020; @jalladesExomeSequencingIdentifies2017]| |
|
| 157 | 81 | |[KLHL14](KLHL14)|1|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|| |
| 158 | -|[KMT2C](KMT2C)|1|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|[@zhouSporadicEndemicBurkitt2019; @zhangGenomicLandscapeMantle2014; @sarkozyMutationalLandscapeGray2021a]| |
|
| 159 | -|[KMT2D](KMT2D)|1|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]|[@beaLandscapeSomaticMutations2013; @rossiCodingGenomeSplenic2012c; @deschGenotypingCirculatingTumor2020; @grandeGenomewideDiscoverySomatic2019]| |
|
| 82 | +|[KLHL6](KLHL6)|1|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]|[@ganapathiGeneticLandscapeDural2016]| |
|
| 83 | +|[KMT2C](KMT2C)|1|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|[@zhouSporadicEndemicBurkitt2019; @sarkozyMutationalLandscapeGray2021a; @zhangGenomicLandscapeMantle2014]| |
|
| 84 | +|[KMT2D](KMT2D)|1|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]|[@beaLandscapeSomaticMutations2013; @deschGenotypingCirculatingTumor2020; @rossiCodingGenomeSplenic2012c; @grandeGenomewideDiscoverySomatic2019]| |
|
| 160 | 85 | |[KRAS](KRAS)|1|[Lohr et al](papers/lohrDiscoveryPrioritizationSomatic2012a)[@lohrDiscoveryPrioritizationSomatic2012a]|| |
| 161 | 86 | |[LCOR](LCOR)|1|[Arthur et al](papers/arthurGenomewideDiscoverySomatic2018)[@arthurGenomewideDiscoverySomatic2018]|| |
| 162 | 87 | |[LTB](LTB)|1|[Chapuy et al](papers/chapuyMolecularSubtypesDiffuse2018b)[@chapuyMolecularSubtypesDiffuse2018b]|[@deschGenotypingCirculatingTumor2020]| |
| ... | ... | @@ -166,35 +91,35 @@ DLBCL-WGS/exome, Pararajalingam 2020, 2 |
| 166 | 91 | |[MPEG1](MPEG1)|1|[Morin et al](papers/morinMutationalStructuralAnalysis2013)[@morinMutationalStructuralAnalysis2013]|| |
| 167 | 92 | |[MS4A1](MS4A1)|1|[Rushton et al](papers/rushtonGeneticEvolutionaryPatterns2020)[@rushtonGeneticEvolutionaryPatterns2020]|[@mottokIntegrativeGenomicAnalysis2019b]| |
| 168 | 93 | |[MTOR](MTOR)|1|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|[@paneaWholeGenomeLandscape2019]| |
| 169 | -|[MYC](MYC)|1|[Pasqualucci et al](papers/pasqualucciHypermutationMultipleProtooncogenes2001a)[@pasqualucciHypermutationMultipleProtooncogenes2001a]|[@dunsCharacterizationDLBCLPMBL2021b; @jalladesExomeSequencingIdentifies2017; @johnstonCmycHypermutationBurkitt1992]| |
|
| 94 | +|[MYC](MYC)|1|[Pasqualucci et al](papers/pasqualucciHypermutationMultipleProtooncogenes2001a)[@pasqualucciHypermutationMultipleProtooncogenes2001a]|[@jalladesExomeSequencingIdentifies2017; @dunsCharacterizationDLBCLPMBL2021b; @johnstonCmycHypermutationBurkitt1992]| |
|
| 170 | 95 | |[MYD88](MYD88)|1|[Ngo et al](papers/ngoOncogenicallyActiveMYD882011a)[@ngoOncogenicallyActiveMYD882011a]|[@yanBCRTLRSignaling2012a]| |
| 171 | -|[NFKBIA](NFKBIA)|1|[Lake et al](papers/lakeMutationsNFKBIAEncoding2009)[@lakeMutationsNFKBIAEncoding2009]|[@russler-germainMutationsAssociatedProgression2023b; @wienandGenomicAnalysesFlowsorted2019b]| |
|
| 172 | -|[NFKBIE](NFKBIE)|1|[Morin et al](papers/morinGeneticLandscapesRelapsed2016)[@morinGeneticLandscapesRelapsed2016]|[@mansouriFrequentNFKBIEDeletions2016; @pararajalingamCodingNoncodingDrivers2020]| |
|
| 96 | +|[NFKBIA](NFKBIA)|1|[Lake et al](papers/lakeMutationsNFKBIAEncoding2009)[@lakeMutationsNFKBIAEncoding2009]|[@wienandGenomicAnalysesFlowsorted2019b; @russler-germainMutationsAssociatedProgression2023b]| |
|
| 97 | +|[NFKBIE](NFKBIE)|1|[Morin et al](papers/morinGeneticLandscapesRelapsed2016)[@morinGeneticLandscapesRelapsed2016]|[@pararajalingamCodingNoncodingDrivers2020; @mansouriFrequentNFKBIEDeletions2016]| |
|
| 173 | 98 | |[NFKBIZ](NFKBIZ)|1|[Morin et al](papers/morinGeneticLandscapesRelapsed2016)[@morinGeneticLandscapesRelapsed2016]|| |
| 174 | 99 | |[NOL9](NOL9)|1|[Schmitz et al](papers/schmitzGeneticsPathogenesisDiffuse2018a)[@schmitzGeneticsPathogenesisDiffuse2018a]|[@spinaGeneticsNodalMarginal2016b]| |
| 175 | -|[NOTCH1](NOTCH1)|1|[Pasqualucci et al](papers/pasqualucciAnalysisCodingGenome2011)[@pasqualucciAnalysisCodingGenome2011]|[@rossiCodingGenomeSplenic2012c; @beaLandscapeSomaticMutations2013; @loveGeneticLandscapeMutations2012]| |
|
| 100 | +|[NOTCH1](NOTCH1)|1|[Pasqualucci et al](papers/pasqualucciAnalysisCodingGenome2011)[@pasqualucciAnalysisCodingGenome2011]|[@beaLandscapeSomaticMutations2013; @rossiCodingGenomeSplenic2012c; @loveGeneticLandscapeMutations2012]| |
|
| 176 | 101 | |[NOTCH2](NOTCH2)|1|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|[@beaLandscapeSomaticMutations2013; @rossiCodingGenomeSplenic2012c]| |
| 177 | 102 | |[OSBPL10](OSBPL10)|1|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|| |
| 178 | 103 | |[P2RY8](P2RY8)|1|[Lohr et al](papers/lohrDiscoveryPrioritizationSomatic2012a)[@lohrDiscoveryPrioritizationSomatic2012a]|[@muppidiLossSignalingGa132014b]| |
| 179 | 104 | |[PIM1](PIM1)|1|[Pasqualucci et al](papers/pasqualucciHypermutationMultipleProtooncogenes2001a)[@pasqualucciHypermutationMultipleProtooncogenes2001a]|[@dunsCharacterizationDLBCLPMBL2021b; @burkhardtClinicalRelevanceMolecular2022b]| |
| 180 | 105 | |[PIM2](PIM2)|1|[Arthur et al](papers/arthurGenomewideDiscoverySomatic2018)[@arthurGenomewideDiscoverySomatic2018]|[@reichelFlowSortingExome2015a]| |
| 181 | -|[POU2AF1](POU2AF1)|1||[@krysiakRecurrentSomaticMutations2017b]| |
|
| 106 | +|[POU2AF1](POU2AF1)|1|[Chapuy et al](papers/chapuyMolecularSubtypesDiffuse2018b)[@chapuyMolecularSubtypesDiffuse2018b]|[@krysiakRecurrentSomaticMutations2017b]| |
|
| 182 | 107 | |[POU2F2](POU2F2)|1|[Lohr et al](papers/lohrDiscoveryPrioritizationSomatic2012a)[@lohrDiscoveryPrioritizationSomatic2012a]|[@krysiakRecurrentSomaticMutations2017b]| |
| 183 | 108 | |[PRDM1](PRDM1)|1|[Pasqualucci et al](papers/pasqualucciInactivationPRDM1BLIMP12006a)[@pasqualucciInactivationPRDM1BLIMP12006a]|| |
| 184 | -|[PTEN](PTEN)|1||[@loveGeneticLandscapeMutations2012]| |
|
| 109 | +|[PTEN](PTEN)|1|[Reddy et al](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|[@loveGeneticLandscapeMutations2012]| |
|
| 185 | 110 | |[PTPRD](PTPRD)|1||[@spinaGeneticsNodalMarginal2016b]| |
| 186 | 111 | |[RB1](RB1)|1|[Morin et al](papers/morinMutationalStructuralAnalysis2013)[@morinMutationalStructuralAnalysis2013]|[@zhangGenomicLandscapeMantle2014]| |
| 187 | 112 | |[RFX7](RFX7)|1||[@grandeGenomewideDiscoverySomatic2019]| |
| 188 | 113 | |[RHOA](RHOA)|1|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|[@richterRecurrentMutationID32012a]| |
| 189 | 114 | |[RRAGC](RRAGC)|1|[Okosun et al](papers/okosunRecurrentMTORC1activatingRRAGC2016a)[@okosunRecurrentMTORC1activatingRRAGC2016a]|| |
| 190 | 115 | |[S1PR2](S1PR2)|1|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]|[@muppidiLossSignalingGa132014b]| |
| 191 | -|[SETD1B](SETD1B)|1|[Reddy et al](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|| |
|
| 192 | -|[SF3B1](SF3B1)|1||[@loveGeneticLandscapeMutations2012]| |
|
| 116 | +|[SETD1B](SETD1B)|1|[Albuquerque et al](papers/albuquerqueEnhancingKnowledgeDiscovery2017a)[@albuquerqueEnhancingKnowledgeDiscovery2017a]|| |
|
| 117 | +|[SF3B1](SF3B1)|1|[Reddy et al](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|[@loveGeneticLandscapeMutations2012]| |
|
| 193 | 118 | |[SGK1](SGK1)|1|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]|[@dunsCharacterizationDLBCLPMBL2021b]| |
| 194 | -|[SIN3A](SIN3A)|1||[@grandeGenomewideDiscoverySomatic2019; @rossiCodingGenomeSplenic2012c]| |
|
| 195 | -|[SMARCA4](SMARCA4)|1|[Lohr et al](papers/lohrDiscoveryPrioritizationSomatic2012a)[@lohrDiscoveryPrioritizationSomatic2012a]|[@nadeuGenomicEpigenomicInsights2020b; @krysiakRecurrentSomaticMutations2017b; @richterRecurrentMutationID32012a]| |
|
| 119 | +|[SIN3A](SIN3A)|1|[Chapuy et al](papers/chapuyMolecularSubtypesDiffuse2018b)[@chapuyMolecularSubtypesDiffuse2018b]|[@grandeGenomewideDiscoverySomatic2019; @rossiCodingGenomeSplenic2012c]| |
|
| 120 | +|[SMARCA4](SMARCA4)|1|[Lohr et al](papers/lohrDiscoveryPrioritizationSomatic2012a)[@lohrDiscoveryPrioritizationSomatic2012a]|[@richterRecurrentMutationID32012a; @nadeuGenomicEpigenomicInsights2020b; @krysiakRecurrentSomaticMutations2017b]| |
|
| 196 | 121 | |[SOCS1](SOCS1)|1|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]|[@wenigerMutationsTumorSuppressor2006a]| |
| 197 | -|[SPEN](SPEN)|1|[Rossi et al](papers/rossiCodingGenomeSplenic2012c)[@rossiCodingGenomeSplenic2012c]|[@sarkozyMutationalLandscapeGray2021a]| |
|
| 122 | +|[SPEN](SPEN)|1|[Albuquerque et al](papers/albuquerqueEnhancingKnowledgeDiscovery2017a)[@albuquerqueEnhancingKnowledgeDiscovery2017a]|[@sarkozyMutationalLandscapeGray2021a; @rossiCodingGenomeSplenic2012c]| |
|
| 198 | 123 | |[STAT3](STAT3)|1|[Lohr et al](papers/lohrDiscoveryPrioritizationSomatic2012a)[@lohrDiscoveryPrioritizationSomatic2012a]|| |
| 199 | 124 | |[STAT6](STAT6)|1|[Yildiz et al](papers/yildizActivatingSTAT6Mutations2015c)[@yildizActivatingSTAT6Mutations2015c]|[@ritzRecurrentMutationsSTAT62009a]| |
| 200 | 125 | |[TAF1](TAF1)|1|[Morin et al](papers/morinMutationalStructuralAnalysis2013)[@morinMutationalStructuralAnalysis2013]|[@spinaGeneticsNodalMarginal2016b]| |
| ... | ... | @@ -202,10 +127,10 @@ DLBCL-WGS/exome, Pararajalingam 2020, 2 |
| 202 | 127 | |[TET2](TET2)|1|[Albuquerque et al](papers/albuquerqueEnhancingKnowledgeDiscovery2017a)[@albuquerqueEnhancingKnowledgeDiscovery2017a]|[@thomasGeneticSubgroupsInform2023]| |
| 203 | 128 | |[TMEM30A](TMEM30A)|1|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]|| |
| 204 | 129 | |[TMSB4X](TMSB4X)|1|[Albuquerque et al](papers/albuquerqueEnhancingKnowledgeDiscovery2017a)[@albuquerqueEnhancingKnowledgeDiscovery2017a]|| |
| 205 | -|[TNFAIP3](TNFAIP3)|1|[Compagno et al](papers/compagnoMutationsMultipleGenes2009a)[@compagnoMutationsMultipleGenes2009a]|[@rossiAlterationBIRC3Multiple2011a; @schmitzTNFAIP3A20Tumor2009a]| |
|
| 206 | -|[TNFRSF14](TNFRSF14)|1|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]|[@spinaGeneticsNodalMarginal2016b; @cheungAcquiredTNFRSF14Mutations2010a]| |
|
| 130 | +|[TNFAIP3](TNFAIP3)|1|[Compagno et al](papers/compagnoMutationsMultipleGenes2009a)[@compagnoMutationsMultipleGenes2009a]|[@schmitzTNFAIP3A20Tumor2009a; @rossiAlterationBIRC3Multiple2011a]| |
|
| 131 | +|[TNFRSF14](TNFRSF14)|1|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]|[@cheungAcquiredTNFRSF14Mutations2010a; @spinaGeneticsNodalMarginal2016b]| |
|
| 207 | 132 | |[TOX](TOX)|1|[Reddy et al](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|| |
| 208 | -|[TP53](TP53)|1|[Lohr et al](papers/lohrDiscoveryPrioritizationSomatic2012a)[@lohrDiscoveryPrioritizationSomatic2012a]|[@wildaInactivationARFMDM2p53Pathway2004; @morinFrequentMutationHistonemodifying2011; @rossiCodingGenomeSplenic2012c; @tiacciPervasiveMutationsJAKSTAT2018b; @beaLandscapeSomaticMutations2013]| |
|
| 133 | +|[TP53](TP53)|1|[Lohr et al](papers/lohrDiscoveryPrioritizationSomatic2012a)[@lohrDiscoveryPrioritizationSomatic2012a]|[@beaLandscapeSomaticMutations2013; @rossiCodingGenomeSplenic2012c; @wildaInactivationARFMDM2p53Pathway2004; @morinFrequentMutationHistonemodifying2011; @tiacciPervasiveMutationsJAKSTAT2018b]| |
|
| 209 | 134 | |[TRRAP](TRRAP)|1|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|[@rossiCodingGenomeSplenic2012c]| |
| 210 | 135 | |[UBE2A](UBE2A)|1|[Lohr et al](papers/lohrDiscoveryPrioritizationSomatic2012a)[@lohrDiscoveryPrioritizationSomatic2012a]|[@reichelFlowSortingExome2015a]| |
| 211 | 136 | |[UNC5C](UNC5C)|1|[Lohr et al](papers/lohrDiscoveryPrioritizationSomatic2012a)[@lohrDiscoveryPrioritizationSomatic2012a]|| |
| ... | ... | @@ -214,13 +139,13 @@ DLBCL-WGS/exome, Pararajalingam 2020, 2 |
| 214 | 139 | |[WEE1](WEE1)|1|[Schmitz et al](papers/schmitzGeneticsPathogenesisDiffuse2018a)[@schmitzGeneticsPathogenesisDiffuse2018a]|[@reichelFlowSortingExome2015a]| |
| 215 | 140 | |[XPO1](XPO1)|1|[Mareschal et al](papers/mareschalWholeExomeSequencing2016)[@mareschalWholeExomeSequencing2016]|[@jardinRecurrentMutationsExportin2016a]| |
| 216 | 141 | |[ZC3H12A](ZC3H12A)|1|[Arthur et al](papers/arthurGenomewideDiscoverySomatic2018)[@arthurGenomewideDiscoverySomatic2018]|| |
| 217 | -|[ZFP36L1](ZFP36L1)|1|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]|[@paneaWholeGenomeLandscape2019; @reichelFlowSortingExome2015a]| |
|
| 142 | +|[ZFP36L1](ZFP36L1)|1|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]|[@reichelFlowSortingExome2015a; @paneaWholeGenomeLandscape2019]| |
|
| 218 | 143 | |[ZNF292](ZNF292)|1|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|| |
| 219 | 144 | |[ZNF608](ZNF608)|1|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|[@krysiakRecurrentSomaticMutations2017b]| |
| 220 | 145 | |
| 221 | 146 | ## Tier 2 DLBCL genes |
| 222 | 147 | |
| 223 | -### *168 total* |
|
| 148 | +### *176 total* |
|
| 224 | 149 | |
| 225 | 150 | |Gene|Tier| First DLBCL evidence | Other entities | |
| 226 | 151 | |:-:|:-:|:--|:-| |
| ... | ... | @@ -229,11 +154,12 @@ DLBCL-WGS/exome, Pararajalingam 2020, 2 |
| 229 | 154 | |[AICDA](AICDA)|2|[Arthur et al](papers/arthurGenomewideDiscoverySomatic2018)[@arthurGenomewideDiscoverySomatic2018]|| |
| 230 | 155 | |[ANKRD12](ANKRD12)|2|[Hubschmann et al](papers/hubschmannMutationalMechanismsShaping2021b)[@hubschmannMutationalMechanismsShaping2021b]|| |
| 231 | 156 | |[ARID5B](ARID5B)|2|[Reddy et al](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|[@gomezUltraDeepSequencingReveals2023]| |
| 157 | +|[ASXL3](ASXL3)|2|[Albuquerque et al](papers/albuquerqueEnhancingKnowledgeDiscovery2017a)[@albuquerqueEnhancingKnowledgeDiscovery2017a]|| |
|
| 232 | 158 | |[ATR](ATR)|2|[Reddy et al](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|| |
| 233 | -|[BCL11A](BCL11A)|2||| |
|
| 234 | -|[BCOR](BCOR)|2||[@nadeuGenomicEpigenomicInsights2020b; @jalladesExomeSequencingIdentifies2017]| |
|
| 159 | +|[BCL11A](BCL11A)|2|[Chapuy et al](papers/chapuyMolecularSubtypesDiffuse2018b)[@chapuyMolecularSubtypesDiffuse2018b]|| |
|
| 160 | +|[BCOR](BCOR)|2||[@jalladesExomeSequencingIdentifies2017; @nadeuGenomicEpigenomicInsights2020b]| |
|
| 235 | 161 | |[BCR](BCR)|2|[Lohr et al](papers/lohrDiscoveryPrioritizationSomatic2012a)[@lohrDiscoveryPrioritizationSomatic2012a]|| |
| 236 | -|[BIRC3](BIRC3)|2|[Arthur et al](papers/arthurGenomewideDiscoverySomatic2018)[@arthurGenomewideDiscoverySomatic2018]|[@beaLandscapeSomaticMutations2013; @rossiAlterationBIRC3Multiple2011a; @dunsCharacterizationDLBCLPMBL2021b]| |
|
| 162 | +|[BIRC3](BIRC3)|2|[Arthur et al](papers/arthurGenomewideDiscoverySomatic2018)[@arthurGenomewideDiscoverySomatic2018]|[@dunsCharacterizationDLBCLPMBL2021b; @rossiAlterationBIRC3Multiple2011a; @beaLandscapeSomaticMutations2013]| |
|
| 237 | 163 | |[BLK](BLK)|2||| |
| 238 | 164 | |[BRINP3](BRINP3)|2|[Reddy et al](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|| |
| 239 | 165 | |[BTBD3](BTBD3)|2|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|| |
| ... | ... | @@ -245,6 +171,7 @@ DLBCL-WGS/exome, Pararajalingam 2020, 2 |
| 245 | 171 | |[CD44](CD44)|2|[Arthur et al](papers/arthurGenomewideDiscoverySomatic2018)[@arthurGenomewideDiscoverySomatic2018]|| |
| 246 | 172 | |[CD74](CD74)|2|[Arthur et al](papers/arthurGenomewideDiscoverySomatic2018)[@arthurGenomewideDiscoverySomatic2018]|| |
| 247 | 173 | |[CDH9](CDH9)|2|[Morin et al](papers/morinMutationalStructuralAnalysis2013)[@morinMutationalStructuralAnalysis2013]|| |
| 174 | +|[CEP164](CEP164)|2|[Albuquerque et al](papers/albuquerqueEnhancingKnowledgeDiscovery2017a)[@albuquerqueEnhancingKnowledgeDiscovery2017a]|| |
|
| 248 | 175 | |[CIITA](CIITA)|2|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]|[@mottokGenomicAlterationsCIITA2015b]| |
| 249 | 176 | |[CNOT2](CNOT2)|2|[Hubschmann et al](papers/hubschmannMutationalMechanismsShaping2021b)[@hubschmannMutationalMechanismsShaping2021b]|| |
| 250 | 177 | |[CNTNAP5](CNTNAP5)|2|[Morin et al](papers/morinMutationalStructuralAnalysis2013)[@morinMutationalStructuralAnalysis2013]|| |
| ... | ... | @@ -255,13 +182,16 @@ DLBCL-WGS/exome, Pararajalingam 2020, 2 |
| 255 | 182 | |[DHX16](DHX16)|2|[Hubschmann et al](papers/hubschmannMutationalMechanismsShaping2021b)[@hubschmannMutationalMechanismsShaping2021b]|| |
| 256 | 183 | |[DNAH5](DNAH5)|2|[Morin et al](papers/morinMutationalStructuralAnalysis2013)[@morinMutationalStructuralAnalysis2013]|[@jalladesExomeSequencingIdentifies2017]| |
| 257 | 184 | |[DNM2](DNM2)|2|[Hubschmann et al](papers/hubschmannMutationalMechanismsShaping2021b)[@hubschmannMutationalMechanismsShaping2021b]|| |
| 185 | +|[DNMT3B](DNMT3B)|2|[Albuquerque et al](papers/albuquerqueEnhancingKnowledgeDiscovery2017a)[@albuquerqueEnhancingKnowledgeDiscovery2017a]|| |
|
| 258 | 186 | |[DOCK1](DOCK1)|2|[Chapuy et al](papers/chapuyMolecularSubtypesDiffuse2018b)[@chapuyMolecularSubtypesDiffuse2018b]|| |
| 259 | 187 | |[DSG4](DSG4)|2|[Morin et al](papers/morinMutationalStructuralAnalysis2013)[@morinMutationalStructuralAnalysis2013]|| |
| 260 | 188 | |[EIF2AK3](EIF2AK3)|2||| |
| 189 | +|[ERAP2](ERAP2)|2|[Albuquerque et al](papers/albuquerqueEnhancingKnowledgeDiscovery2017a)[@albuquerqueEnhancingKnowledgeDiscovery2017a]|| |
|
| 261 | 190 | |[EZR](EZR)|2||[@deschGenotypingCirculatingTumor2020]| |
| 262 | 191 | |[FAM102A](FAM102A)|2||| |
| 263 | 192 | |[FANK1](FANK1)|2||| |
| 264 | -|[FAT4](FAT4)|2|[Morin et al](papers/morinMutationalStructuralAnalysis2013)[@morinMutationalStructuralAnalysis2013]|[@zhangGenomicLandscapeMantle2014; @parryWholeExomeSequencing2013]| |
|
| 193 | +|[FAT2](FAT2)|2|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]|| |
|
| 194 | +|[FAT4](FAT4)|2|[Morin et al](papers/morinMutationalStructuralAnalysis2013)[@morinMutationalStructuralAnalysis2013]|[@parryWholeExomeSequencing2013; @zhangGenomicLandscapeMantle2014]| |
|
| 265 | 195 | |[FCRL3](FCRL3)|2||| |
| 266 | 196 | |[FNBP1](FNBP1)|2||| |
| 267 | 197 | |[FOXC1](FOXC1)|2|[Schmitz et al](papers/schmitzGeneticsPathogenesisDiffuse2018a)[@schmitzGeneticsPathogenesisDiffuse2018a]|| |
| ... | ... | @@ -274,18 +204,19 @@ DLBCL-WGS/exome, Pararajalingam 2020, 2 |
| 274 | 204 | |[GSG2](GSG2)|2|[Schmitz et al](papers/schmitzGeneticsPathogenesisDiffuse2018a)[@schmitzGeneticsPathogenesisDiffuse2018a]|| |
| 275 | 205 | |[H1FOO](H1FOO)|2|[Lohr et al](papers/lohrDiscoveryPrioritizationSomatic2012a)[@lohrDiscoveryPrioritizationSomatic2012a]|| |
| 276 | 206 | |[HDAC7](HDAC7)|2|[Morin et al](papers/morinMutationalStructuralAnalysis2013)[@morinMutationalStructuralAnalysis2013]|| |
| 277 | -|[HIST1H2AG](HIST1H2AG)|2|[Morin et al](papers/morinMutationalStructuralAnalysis2013)[@morinMutationalStructuralAnalysis2013]|[@rossiCodingGenomeSplenic2012c; @krysiakRecurrentSomaticMutations2017b; @paneaWholeGenomeLandscape2019]| |
|
| 207 | +|[HIST1H2AG](HIST1H2AG)|2|[Morin et al](papers/morinMutationalStructuralAnalysis2013)[@morinMutationalStructuralAnalysis2013]|[@krysiakRecurrentSomaticMutations2017b; @paneaWholeGenomeLandscape2019; @rossiCodingGenomeSplenic2012c]| |
|
| 278 | 208 | |[HIST1H2AL](HIST1H2AL)|2|[Lohr et al](papers/lohrDiscoveryPrioritizationSomatic2012a)[@lohrDiscoveryPrioritizationSomatic2012a]|| |
| 279 | 209 | |[HIST1H2BO](HIST1H2BO)|2|[Lohr et al](papers/lohrDiscoveryPrioritizationSomatic2012a)[@lohrDiscoveryPrioritizationSomatic2012a]|| |
| 280 | -|[HLA-DMA](HLA-DMA)|2||| |
|
| 210 | +|[HLA-DMA](HLA-DMA)|2|[Chapuy et al](papers/chapuyMolecularSubtypesDiffuse2018b)[@chapuyMolecularSubtypesDiffuse2018b]|| |
|
| 281 | 211 | |[HNF1B](HNF1B)|2|[Pasqualucci et al](papers/pasqualucciAnalysisCodingGenome2011)[@pasqualucciAnalysisCodingGenome2011]|| |
| 212 | +|[HNRNPD](HNRNPD)|2|[Reddy et al](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|| |
|
| 282 | 213 | |[HNRNPH1](HNRNPH1)|2|[Pararajalingam et al](papers/pararajalingamCodingNoncodingDrivers2020)[@pararajalingamCodingNoncodingDrivers2020]|| |
| 283 | -|[ID3](ID3)|2|[Schmitz et al](papers/schmitzBurkittLymphomaPathogenesis2012)[@schmitzBurkittLymphomaPathogenesis2012]|[@richterRecurrentMutationID32012a; @spinaGeneticsNodalMarginal2016b]| |
|
| 214 | +|[ID3](ID3)|2|[Schmitz et al](papers/schmitzBurkittLymphomaPathogenesis2012)[@schmitzBurkittLymphomaPathogenesis2012]|[@spinaGeneticsNodalMarginal2016b; @richterRecurrentMutationID32012a]| |
|
| 284 | 215 | |[IFNGR1](IFNGR1)|2|[Morin et al](papers/morinMutationalStructuralAnalysis2013)[@morinMutationalStructuralAnalysis2013]|| |
| 285 | -|[IGLL5](IGLL5)|2||[@paneaWholeGenomeLandscape2019; @deschGenotypingCirculatingTumor2020; @russler-germainMutationsAssociatedProgression2023b]| |
|
| 286 | -|[IKBKB](IKBKB)|2|[Reddy et al](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|[@rossiAlterationBIRC3Multiple2011a; @wienandGenomicAnalysesFlowsorted2019b]| |
|
| 216 | +|[IGLL5](IGLL5)|2|[Chapuy et al](papers/chapuyMolecularSubtypesDiffuse2018b)[@chapuyMolecularSubtypesDiffuse2018b]|[@paneaWholeGenomeLandscape2019; @deschGenotypingCirculatingTumor2020; @russler-germainMutationsAssociatedProgression2023b]| |
|
| 217 | +|[IKBKB](IKBKB)|2|[Reddy et al](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|[@wienandGenomicAnalysesFlowsorted2019b; @rossiAlterationBIRC3Multiple2011a]| |
|
| 287 | 218 | |[IKBKE](IKBKE)|2|[Hubschmann et al](papers/hubschmannMutationalMechanismsShaping2021b)[@hubschmannMutationalMechanismsShaping2021b]|| |
| 288 | -|[IL16](IL16)|2||| |
|
| 219 | +|[IL16](IL16)|2|[Reddy et al](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|| |
|
| 289 | 220 | |[IL6](IL6)|2|[Chapuy et al](papers/chapuyMolecularSubtypesDiffuse2018b)[@chapuyMolecularSubtypesDiffuse2018b]|| |
| 290 | 221 | |[INO80](INO80)|2|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|| |
| 291 | 222 | |[IRF1](IRF1)|2|[Hubschmann et al](papers/hubschmannMutationalMechanismsShaping2021b)[@hubschmannMutationalMechanismsShaping2021b]|| |
| ... | ... | @@ -294,17 +225,16 @@ DLBCL-WGS/exome, Pararajalingam 2020, 2 |
| 294 | 225 | |[JUNB](JUNB)|2|[Reddy et al](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|[@mottokIntegrativeGenomicAnalysis2019b]| |
| 295 | 226 | |[KCMF1](KCMF1)|2|[Reddy et al](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|| |
| 296 | 227 | |[KLHL21](KLHL21)|2|[Schmitz et al](papers/schmitzGeneticsPathogenesisDiffuse2018a)[@schmitzGeneticsPathogenesisDiffuse2018a]|| |
| 297 | -|[KLHL6](KLHL6)|2|[Lohr et al](papers/lohrDiscoveryPrioritizationSomatic2012a)[@lohrDiscoveryPrioritizationSomatic2012a]|[@ganapathiGeneticLandscapeDural2016; @morinFrequentMutationHistonemodifying2011]| |
|
| 298 | 228 | |[KRTAP5-5](KRTAP5-5)|2|[Lohr et al](papers/lohrDiscoveryPrioritizationSomatic2012a)[@lohrDiscoveryPrioritizationSomatic2012a]|| |
| 299 | 229 | |[LAMA5](LAMA5)|2|[Schmitz et al](papers/schmitzGeneticsPathogenesisDiffuse2018a)[@schmitzGeneticsPathogenesisDiffuse2018a]|| |
| 300 | -|[LAPTM5](LAPTM5)|2||[@hubschmannMutationalMechanismsShaping2021b]| |
|
| 230 | +|[LAPTM5](LAPTM5)|2|[Hubschmann et al](papers/hubschmannMutationalMechanismsShaping2021b)[@hubschmannMutationalMechanismsShaping2021b]|| |
|
| 301 | 231 | |[LPP](LPP)|2|[Arthur et al](papers/arthurGenomewideDiscoverySomatic2018)[@arthurGenomewideDiscoverySomatic2018]|| |
| 302 | 232 | |[LRP12](LRP12)|2|[Hubschmann et al](papers/hubschmannMutationalMechanismsShaping2021b)[@hubschmannMutationalMechanismsShaping2021b]|| |
| 303 | 233 | |[LYN](LYN)|2|[Chapuy et al](papers/chapuyMolecularSubtypesDiffuse2018b)[@chapuyMolecularSubtypesDiffuse2018b]|| |
| 304 | 234 | |[MAGT1](MAGT1)|2|[Reddy et al](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|| |
| 305 | 235 | |[MALAT1](MALAT1)|2|[Arthur et al](papers/arthurGenomewideDiscoverySomatic2018)[@arthurGenomewideDiscoverySomatic2018]|| |
| 306 | 236 | |[MAP2K1](MAP2K1)|2|[Shin et al](papers/shinBRAFV600EMAP2K12015)[@shinBRAFV600EMAP2K12015]|[@louissaintPediatrictypeNodalFollicular2016a]| |
| 307 | -|[MCL1](MCL1)|2|[Reddy et al](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|[@dunsCharacterizationDLBCLPMBL2021b; @paneaWholeGenomeLandscape2019]| |
|
| 237 | +|[MCL1](MCL1)|2|[Reddy et al](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|[@paneaWholeGenomeLandscape2019; @dunsCharacterizationDLBCLPMBL2021b]| |
|
| 308 | 238 | |[MECOM](MECOM)|2|[Reddy et al](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|| |
| 309 | 239 | |[MET](MET)|2|[Reddy et al](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|| |
| 310 | 240 | |[MIR142](MIR142)|2|[Kwanhian et al](papers/kwanhianMicroRNA142Mutated202012b)[@kwanhianMicroRNA142Mutated202012b]|[@grandeGenomewideDiscoverySomatic2019]| |
| ... | ... | @@ -316,7 +246,7 @@ DLBCL-WGS/exome, Pararajalingam 2020, 2 |
| 316 | 246 | |[MYOM2](MYOM2)|2|[Pasqualucci et al](papers/pasqualucciAnalysisCodingGenome2011)[@pasqualucciAnalysisCodingGenome2011]|| |
| 317 | 247 | |[NAV1](NAV1)|2|[Chapuy et al](papers/chapuyMolecularSubtypesDiffuse2018b)[@chapuyMolecularSubtypesDiffuse2018b]|| |
| 318 | 248 | |[NCOA3](NCOA3)|2||| |
| 319 | -|[NCOR2](NCOR2)|2||[@spinaGeneticsNodalMarginal2016b; @sarkozyMutationalLandscapeGray2021a; @schmitzBurkittLymphomaPathogenesis2012]| |
|
| 249 | +|[NCOR2](NCOR2)|2||[@schmitzBurkittLymphomaPathogenesis2012; @spinaGeneticsNodalMarginal2016b; @sarkozyMutationalLandscapeGray2021a]| |
|
| 320 | 250 | |[NEAT1](NEAT1)|2|[Arthur et al](papers/arthurGenomewideDiscoverySomatic2018)[@arthurGenomewideDiscoverySomatic2018]|| |
| 321 | 251 | |[NF1](NF1)|2|[Reddy et al](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|| |
| 322 | 252 | |[NFKB1](NFKB1)|2||| |
| ... | ... | @@ -345,6 +275,7 @@ DLBCL-WGS/exome, Pararajalingam 2020, 2 |
| 345 | 275 | |[PTPN1](PTPN1)|2||[@gunawardanaRecurrentSomaticMutations2014c]| |
| 346 | 276 | |[PTPN6](PTPN6)|2|[Reddy et al](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|| |
| 347 | 277 | |[RAC2](RAC2)|2|[Hubschmann et al](papers/hubschmannMutationalMechanismsShaping2021b)[@hubschmannMutationalMechanismsShaping2021b]|| |
| 278 | +|[RAPGEF1](RAPGEF1)|2|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]|| |
|
| 348 | 279 | |[RCC](RCC)|2||| |
| 349 | 280 | |[RFTN1](RFTN1)|2|[Arthur et al](papers/arthurGenomewideDiscoverySomatic2018)[@arthurGenomewideDiscoverySomatic2018]|[@dunsCharacterizationDLBCLPMBL2021b]| |
| 350 | 281 | |[RFXAP](RFXAP)|2||| |
| ... | ... | @@ -362,6 +293,7 @@ DLBCL-WGS/exome, Pararajalingam 2020, 2 |
| 362 | 293 | |[SLC34A2](SLC34A2)|2|[Hubschmann et al](papers/hubschmannMutationalMechanismsShaping2021b)[@hubschmannMutationalMechanismsShaping2021b]|| |
| 363 | 294 | |[SLC38A8](SLC38A8)|2|[Lohr et al](papers/lohrDiscoveryPrioritizationSomatic2012a)[@lohrDiscoveryPrioritizationSomatic2012a]|| |
| 364 | 295 | |[SLITRK6](SLITRK6)|2|[Lohr et al](papers/lohrDiscoveryPrioritizationSomatic2012a)[@lohrDiscoveryPrioritizationSomatic2012a]|| |
| 296 | +|[SMEK1](SMEK1)|2|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|| |
|
| 365 | 297 | |[SRPX](SRPX)|2|[Lohr et al](papers/lohrDiscoveryPrioritizationSomatic2012a)[@lohrDiscoveryPrioritizationSomatic2012a]|| |
| 366 | 298 | |[SRRM2](SRRM2)|2|[Morin et al](papers/morinMutationalStructuralAnalysis2013)[@morinMutationalStructuralAnalysis2013]|[@russler-germainMutationsAssociatedProgression2023b]| |
| 367 | 299 | |[ST6GAL1](ST6GAL1)|2|[Arthur et al](papers/arthurGenomewideDiscoverySomatic2018)[@arthurGenomewideDiscoverySomatic2018]|| |
| ... | ... | @@ -370,7 +302,7 @@ DLBCL-WGS/exome, Pararajalingam 2020, 2 |
| 370 | 302 | |[SYPL1](SYPL1)|2|[Morin et al](papers/morinMutationalStructuralAnalysis2013)[@morinMutationalStructuralAnalysis2013]|| |
| 371 | 303 | |[TAP1](TAP1)|2|[Schmitz et al](papers/schmitzGeneticsPathogenesisDiffuse2018a)[@schmitzGeneticsPathogenesisDiffuse2018a]|| |
| 372 | 304 | |[TBC1D4](TBC1D4)|2|[Arthur et al](papers/arthurGenomewideDiscoverySomatic2018)[@arthurGenomewideDiscoverySomatic2018]|| |
| 373 | -|[TCL1A](TCL1A)|2||[@grandeGenomewideDiscoverySomatic2019]| |
|
| 305 | +|[TCL1A](TCL1A)|2|[Reddy et al](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|[@grandeGenomewideDiscoverySomatic2019]| |
|
| 374 | 306 | |[TGFBR2](TGFBR2)|2|[Reddy et al](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|| |
| 375 | 307 | |[TIPARP](TIPARP)|2|[Reddy et al](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|| |
| 376 | 308 | |[TLR2](TLR2)|2|[Chapuy et al](papers/chapuyMolecularSubtypesDiffuse2018b)[@chapuyMolecularSubtypesDiffuse2018b]|[@beaLandscapeSomaticMutations2013]| |
| ... | ... | @@ -381,6 +313,7 @@ DLBCL-WGS/exome, Pararajalingam 2020, 2 |
| 381 | 313 | |[TRIP12](TRIP12)|2||| |
| 382 | 314 | |[UBE2J1](UBE2J1)|2||| |
| 383 | 315 | |[UBR5](UBR5)|2|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|[@pararajalingamCodingNoncodingDrivers2020]| |
| 316 | +|[UHRF1BP1](UHRF1BP1)|2|[Albuquerque et al](papers/albuquerqueEnhancingKnowledgeDiscovery2017a)[@albuquerqueEnhancingKnowledgeDiscovery2017a]|| |
|
| 384 | 317 | |[UNC5B](UNC5B)|2|[Hubschmann et al](papers/hubschmannMutationalMechanismsShaping2021b)[@hubschmannMutationalMechanismsShaping2021b]|| |
| 385 | 318 | |[UNC5D](UNC5D)|2|[Lohr et al](papers/lohrDiscoveryPrioritizationSomatic2012a)[@lohrDiscoveryPrioritizationSomatic2012a]|| |
| 386 | 319 | |[WDFY3](WDFY3)|2|[Morin et al](papers/morinMutationalStructuralAnalysis2013)[@morinMutationalStructuralAnalysis2013]|| |
| ... | ... | @@ -395,7 +328,7 @@ DLBCL-WGS/exome, Pararajalingam 2020, 2 |
| 395 | 328 | |
| 396 | 329 | ## Tier 3 DLBCL genes |
| 397 | 330 | |
| 398 | -### *381 total* |
|
| 331 | +### *389 total* |
|
| 399 | 332 | |
| 400 | 333 | |Gene|Tier| First DLBCL evidence | Other entities | |
| 401 | 334 | |:-:|:-:|:--|:-| |
| ... | ... | @@ -412,10 +345,15 @@ DLBCL-WGS/exome, Pararajalingam 2020, 2 |
| 412 | 345 | |[ADH7](ADH7)|3|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|| |
| 413 | 346 | |[AFAP1L2](AFAP1L2)|3|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|| |
| 414 | 347 | |[AGA](AGA)|3|[Fan et al](papers/fanComprehensiveCharacterizationDriver2020b)[@fanComprehensiveCharacterizationDriver2020b]|| |
| 348 | +|[AHR](AHR)|3|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|| |
|
| 349 | +|[AKAP9](AKAP9)|3|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|| |
|
| 350 | +|[ALAS1](ALAS1)|3|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|| |
|
| 351 | +|[ALDH1L2](ALDH1L2)|3|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|| |
|
| 415 | 352 | |[AMAC1](AMAC1)|3|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|| |
| 416 | 353 | |[AMIGO3](AMIGO3)|3|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|| |
| 417 | 354 | |[AMPH](AMPH)|3|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|| |
| 418 | 355 | |[ANK2](ANK2)|3|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|[@zhangGenomicLandscapeMantle2014]| |
| 356 | +|[ANKRD17](ANKRD17)|3|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|| |
|
| 419 | 357 | |[ANKRD44](ANKRD44)|3|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|| |
| 420 | 358 | |[ANTXR1](ANTXR1)|3|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|| |
| 421 | 359 | |[AP1G2](AP1G2)|3|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|| |
| ... | ... | @@ -424,6 +362,7 @@ DLBCL-WGS/exome, Pararajalingam 2020, 2 |
| 424 | 362 | |[APMAP](APMAP)|3|[Fan et al](papers/fanComprehensiveCharacterizationDriver2020b)[@fanComprehensiveCharacterizationDriver2020b]|| |
| 425 | 363 | |[APOA5](APOA5)|3|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|| |
| 426 | 364 | |[APP](APP)|3|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|| |
| 365 | +|[ARID1B](ARID1B)|3|[Reddy et al](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|| |
|
| 427 | 366 | |[ATIC](ATIC)|3|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|| |
| 428 | 367 | |[ATP10A](ATP10A)|3|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|| |
| 429 | 368 | |[ATP1A2](ATP1A2)|3|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|| |
| ... | ... | @@ -443,22 +382,28 @@ DLBCL-WGS/exome, Pararajalingam 2020, 2 |
| 443 | 382 | |[CAD](CAD)|3|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|[@loveGeneticLandscapeMutations2012]| |
| 444 | 383 | |[CAPN5](CAPN5)|3|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|| |
| 445 | 384 | |[CAPN7](CAPN7)|3|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|| |
| 385 | +|[CBLB](CBLB)|3|[Reddy et al](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|| |
|
| 446 | 386 | |[CBX3](CBX3)|3|[Fan et al](papers/fanComprehensiveCharacterizationDriver2020b)[@fanComprehensiveCharacterizationDriver2020b]|| |
| 447 | 387 | |[CCDC132](CCDC132)|3|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|| |
| 448 | 388 | |[CCDC46](CCDC46)|3|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|| |
| 449 | 389 | |[CCDC97](CCDC97)|3|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|| |
| 390 | +|[CCL4](CCL4)|3|[Chapuy et al](papers/chapuyMolecularSubtypesDiffuse2018b)[@chapuyMolecularSubtypesDiffuse2018b]|| |
|
| 450 | 391 | |[CCNF](CCNF)|3|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|[@abateDistinctViralMutational2015a]| |
| 451 | 392 | |[CDC123](CDC123)|3|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|| |
| 393 | +|[CDC73](CDC73)|3|[Reddy et al](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|[@loveGeneticLandscapeMutations2012]| |
|
| 452 | 394 | |[CDH10](CDH10)|3|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|| |
| 453 | 395 | |[CDH7](CDH7)|3|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|| |
| 396 | +|[CDH8](CDH8)|3|[Reddy et al](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|[@zhangGenomicLandscapeMantle2014]| |
|
| 454 | 397 | |[CDK3](CDK3)|3|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|| |
| 455 | 398 | |[CDKN1A](CDKN1A)|3|[Fan et al](papers/fanComprehensiveCharacterizationDriver2020b)[@fanComprehensiveCharacterizationDriver2020b]|| |
| 456 | 399 | |[CECR1](CECR1)|3|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|| |
| 457 | 400 | |[CELSR2](CELSR2)|3|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|| |
| 458 | 401 | |[CGN](CGN)|3|[Fan et al](papers/fanComprehensiveCharacterizationDriver2020b)[@fanComprehensiveCharacterizationDriver2020b]|| |
| 402 | +|[CHD1](CHD1)|3|[Reddy et al](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|| |
|
| 459 | 403 | |[CHD3](CHD3)|3|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|| |
| 460 | 404 | |[CHEK2](CHEK2)|3|[Fan et al](papers/fanComprehensiveCharacterizationDriver2020b)[@fanComprehensiveCharacterizationDriver2020b]|| |
| 461 | 405 | |[CHRM5](CHRM5)|3|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|| |
| 406 | +|[CHST2](CHST2)|3|[Reddy et al](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|| |
|
| 462 | 407 | |[CIC](CIC)|3|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|| |
| 463 | 408 | |[CNGA4](CNGA4)|3|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|| |
| 464 | 409 | |[CNOT6](CNOT6)|3|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|| |
| ... | ... | @@ -476,13 +421,17 @@ DLBCL-WGS/exome, Pararajalingam 2020, 2 |
| 476 | 421 | |[CYP24A1](CYP24A1)|3|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|| |
| 477 | 422 | |[CYP2C18](CYP2C18)|3|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|| |
| 478 | 423 | |[CYYR1](CYYR1)|3|[Fan et al](papers/fanComprehensiveCharacterizationDriver2020b)[@fanComprehensiveCharacterizationDriver2020b]|| |
| 424 | +|[DCAF6](DCAF6)|3|[Reddy et al](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|| |
|
| 479 | 425 | |[DDB1](DDB1)|3|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|| |
| 426 | +|[DDX10](DDX10)|3|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|| |
|
| 480 | 427 | |[DGCR8](DGCR8)|3|[Fan et al](papers/fanComprehensiveCharacterizationDriver2020b)[@fanComprehensiveCharacterizationDriver2020b]|| |
| 481 | 428 | |[DHX33](DHX33)|3|[Fan et al](papers/fanComprehensiveCharacterizationDriver2020b)[@fanComprehensiveCharacterizationDriver2020b]|| |
| 482 | 429 | |[DIAPH3](DIAPH3)|3|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|| |
| 430 | +|[DICER1](DICER1)|3|[Reddy et al](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|| |
|
| 483 | 431 | |[DIP2B](DIP2B)|3|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|| |
| 484 | 432 | |[DLGAP1](DLGAP1)|3|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|[@loveGeneticLandscapeMutations2012]| |
| 485 | 433 | |[DMXL1](DMXL1)|3|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|| |
| 434 | +|[DNMT3A](DNMT3A)|3|[Reddy et al](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|| |
|
| 486 | 435 | |[DOCK2](DOCK2)|3|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|| |
| 487 | 436 | |[DOCK5](DOCK5)|3|[Fan et al](papers/fanComprehensiveCharacterizationDriver2020b)[@fanComprehensiveCharacterizationDriver2020b]|| |
| 488 | 437 | |[DOLK](DOLK)|3|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|| |
| ... | ... | @@ -502,9 +451,11 @@ DLBCL-WGS/exome, Pararajalingam 2020, 2 |
| 502 | 451 | |[EPHA7](EPHA7)|3|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|[@mottokIntegrativeGenomicAnalysis2019b]| |
| 503 | 452 | |[ERBB3](ERBB3)|3|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|| |
| 504 | 453 | |[ERN2](ERN2)|3|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|| |
| 454 | +|[ETNPPL](ETNPPL)|3|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|| |
|
| 505 | 455 | |[EXTL3](EXTL3)|3|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|| |
| 506 | 456 | |[FAIM](FAIM)|3|[Fan et al](papers/fanComprehensiveCharacterizationDriver2020b)[@fanComprehensiveCharacterizationDriver2020b]|| |
| 507 | 457 | |[FAM161A](FAM161A)|3|[Fan et al](papers/fanComprehensiveCharacterizationDriver2020b)[@fanComprehensiveCharacterizationDriver2020b]|| |
| 458 | +|[FAM38B](FAM38B)|3|[Morin et al](papers/morinMutationalStructuralAnalysis2013)[@morinMutationalStructuralAnalysis2013]|| |
|
| 508 | 459 | |[FAM62C](FAM62C)|3|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|| |
| 509 | 460 | |[FANCD2](FANCD2)|3|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|| |
| 510 | 461 | |[FGD3](FGD3)|3|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|| |
| ... | ... | @@ -515,14 +466,18 @@ DLBCL-WGS/exome, Pararajalingam 2020, 2 |
| 515 | 466 | |[FLT1](FLT1)|3|[Fan et al](papers/fanComprehensiveCharacterizationDriver2020b)[@fanComprehensiveCharacterizationDriver2020b]|| |
| 516 | 467 | |[FMO2](FMO2)|3|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|| |
| 517 | 468 | |[FN1](FN1)|3|[Fan et al](papers/fanComprehensiveCharacterizationDriver2020b)[@fanComprehensiveCharacterizationDriver2020b]|| |
| 469 | +|[FNDC1](FNDC1)|3|[Morin et al](papers/morinMutationalStructuralAnalysis2013)[@morinMutationalStructuralAnalysis2013]|| |
|
| 518 | 470 | |[FRMPD1](FRMPD1)|3|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|| |
| 471 | +|[FUT5](FUT5)|3|[Chapuy et al](papers/chapuyMolecularSubtypesDiffuse2018b)[@chapuyMolecularSubtypesDiffuse2018b]|| |
|
| 519 | 472 | |[FZD1](FZD1)|3|[Fan et al](papers/fanComprehensiveCharacterizationDriver2020b)[@fanComprehensiveCharacterizationDriver2020b]|| |
| 520 | 473 | |[GABRG1](GABRG1)|3|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|| |
| 474 | +|[GAK](GAK)|3|[Hubschmann et al](papers/hubschmannMutationalMechanismsShaping2021b)[@hubschmannMutationalMechanismsShaping2021b]|| |
|
| 521 | 475 | |[GATA2](GATA2)|3|[Fan et al](papers/fanComprehensiveCharacterizationDriver2020b)[@fanComprehensiveCharacterizationDriver2020b]|| |
| 522 | 476 | |[GATA3](GATA3)|3|[Fan et al](papers/fanComprehensiveCharacterizationDriver2020b)[@fanComprehensiveCharacterizationDriver2020b]|| |
| 523 | 477 | |[GCN1L1](GCN1L1)|3|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|| |
| 524 | 478 | |[GJA8](GJA8)|3|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|| |
| 525 | 479 | |[GJB4](GJB4)|3|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|| |
| 480 | +|[GNAS](GNAS)|3|[Reddy et al](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|| |
|
| 526 | 481 | |[GOPC](GOPC)|3|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|| |
| 527 | 482 | |[GPD2](GPD2)|3|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|| |
| 528 | 483 | |[GPR133](GPR133)|3|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|| |
| ... | ... | @@ -537,10 +492,13 @@ DLBCL-WGS/exome, Pararajalingam 2020, 2 |
| 537 | 492 | |[HIPK3](HIPK3)|3|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|| |
| 538 | 493 | |[HIST1H4I](HIST1H4I)|3|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|| |
| 539 | 494 | |[HK3](HK3)|3|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|| |
| 495 | +|[HLA-DQA1](HLA-DQA1)|3|[Hubschmann et al](papers/hubschmannMutationalMechanismsShaping2021b)[@hubschmannMutationalMechanismsShaping2021b]|| |
|
| 540 | 496 | |[HLA-DRB1](HLA-DRB1)|3|[Fan et al](papers/fanComprehensiveCharacterizationDriver2020b)[@fanComprehensiveCharacterizationDriver2020b]|| |
| 541 | 497 | |[HNRNPR](HNRNPR)|3|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|| |
| 498 | +|[HRAS](HRAS)|3|[Reddy et al](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|[@jalladesExomeSequencingIdentifies2017]| |
|
| 542 | 499 | |[HSF2](HSF2)|3|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|| |
| 543 | 500 | |[IDH1](IDH1)|3|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|| |
| 501 | +|[IER2](IER2)|3|[Morin et al](papers/morinMutationalStructuralAnalysis2013)[@morinMutationalStructuralAnalysis2013]|| |
|
| 544 | 502 | |[IL6ST](IL6ST)|3|[Fan et al](papers/fanComprehensiveCharacterizationDriver2020b)[@fanComprehensiveCharacterizationDriver2020b]|| |
| 545 | 503 | |[INSC](INSC)|3|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|| |
| 546 | 504 | |[INTS6](INTS6)|3|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|| |
| ... | ... | @@ -570,6 +528,7 @@ DLBCL-WGS/exome, Pararajalingam 2020, 2 |
| 570 | 528 | |[LEPREL1](LEPREL1)|3|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|| |
| 571 | 529 | |[LIFR](LIFR)|3|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|| |
| 572 | 530 | |[LILRA2](LILRA2)|3|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|| |
| 531 | +|[LIN54](LIN54)|3|[Reddy et al](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|| |
|
| 573 | 532 | |[LIN7C](LIN7C)|3|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|| |
| 574 | 533 | |[LPHN2](LPHN2)|3|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|| |
| 575 | 534 | |[LRAP](LRAP)|3|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|| |
| ... | ... | @@ -581,7 +540,9 @@ DLBCL-WGS/exome, Pararajalingam 2020, 2 |
| 581 | 540 | |[LRRN3](LRRN3)|3|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|[@sarkozyMutationalLandscapeGray2021a]| |
| 582 | 541 | |[LYST](LYST)|3|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|| |
| 583 | 542 | |[MAP2K3](MAP2K3)|3|[Fan et al](papers/fanComprehensiveCharacterizationDriver2020b)[@fanComprehensiveCharacterizationDriver2020b]|| |
| 543 | +|[MAP4K4](MAP4K4)|3|[Reddy et al](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|| |
|
| 584 | 544 | |[MARCHF7](MARCHF7)|3|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|| |
| 545 | +|[MARK1](MARK1)|3|[Reddy et al](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|| |
|
| 585 | 546 | |[MBL2](MBL2)|3|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|| |
| 586 | 547 | |[MCM8](MCM8)|3|[Fan et al](papers/fanComprehensiveCharacterizationDriver2020b)[@fanComprehensiveCharacterizationDriver2020b]|| |
| 587 | 548 | |[MED13L](MED13L)|3|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|| |
| ... | ... | @@ -591,24 +552,32 @@ DLBCL-WGS/exome, Pararajalingam 2020, 2 |
| 591 | 552 | |[MN1](MN1)|3|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|| |
| 592 | 553 | |[MORC2](MORC2)|3|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|| |
| 593 | 554 | |[MPL](MPL)|3|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|| |
| 555 | +|[MSH2](MSH2)|3|[Reddy et al](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|| |
|
| 594 | 556 | |[MSN](MSN)|3|[Fan et al](papers/fanComprehensiveCharacterizationDriver2020b)[@fanComprehensiveCharacterizationDriver2020b]|| |
| 595 | 557 | |[MTMR3](MTMR3)|3|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|| |
| 558 | +|[MYB](MYB)|3|[Reddy et al](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|[@deschGenotypingCirculatingTumor2020]| |
|
| 596 | 559 | |[MYL7](MYL7)|3|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|| |
| 597 | 560 | |[MYO5C](MYO5C)|3|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|| |
| 598 | 561 | |[MYRIP](MYRIP)|3|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|| |
| 562 | +|[NANOG](NANOG)|3|[Chapuy et al](papers/chapuyMolecularSubtypesDiffuse2018b)[@chapuyMolecularSubtypesDiffuse2018b]|| |
|
| 563 | +|[NCOR1](NCOR1)|3|[Reddy et al](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|| |
|
| 599 | 564 | |[NDUFS1](NDUFS1)|3|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|| |
| 600 | 565 | |[NELL2](NELL2)|3|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|| |
| 601 | 566 | |[NFIB](NFIB)|3|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|| |
| 567 | +|[NFKB2](NFKB2)|3|[Reddy et al](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|[@mottokIntegrativeGenomicAnalysis2019b]| |
|
| 602 | 568 | |[NFX1](NFX1)|3|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|| |
| 603 | 569 | |[NGFR](NGFR)|3|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|| |
| 604 | 570 | |[NIPBL](NIPBL)|3|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|| |
| 605 | 571 | |[NLGN2](NLGN2)|3|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|| |
| 606 | 572 | |[NLRP7](NLRP7)|3|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|| |
| 573 | +|[NLRP8](NLRP8)|3|[Chapuy et al](papers/chapuyMolecularSubtypesDiffuse2018b)[@chapuyMolecularSubtypesDiffuse2018b]|| |
|
| 607 | 574 | |[NOTCH3](NOTCH3)|3|[Fan et al](papers/fanComprehensiveCharacterizationDriver2020b)[@fanComprehensiveCharacterizationDriver2020b]|| |
| 608 | 575 | |[NPHP1](NPHP1)|3|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|| |
| 609 | 576 | |[NPY2R](NPY2R)|3|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|| |
| 577 | +|[NR2F2](NR2F2)|3|[Hubschmann et al](papers/hubschmannMutationalMechanismsShaping2021b)[@hubschmannMutationalMechanismsShaping2021b]|| |
|
| 610 | 578 | |[NRXN2](NRXN2)|3|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|[@loveGeneticLandscapeMutations2012]| |
| 611 | 579 | |[NSD1](NSD1)|3|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|| |
| 580 | +|[NSD2](NSD2)|3|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|[@beaLandscapeSomaticMutations2013]| |
|
| 612 | 581 | |[NUP153](NUP153)|3|[Fan et al](papers/fanComprehensiveCharacterizationDriver2020b)[@fanComprehensiveCharacterizationDriver2020b]|| |
| 613 | 582 | |[ONECUT1](ONECUT1)|3|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|| |
| 614 | 583 | |[PABPC1](PABPC1)|3|[Fan et al](papers/fanComprehensiveCharacterizationDriver2020b)[@fanComprehensiveCharacterizationDriver2020b]|| |
| ... | ... | @@ -623,6 +592,8 @@ DLBCL-WGS/exome, Pararajalingam 2020, 2 |
| 623 | 592 | |[PCDHB3](PCDHB3)|3|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|| |
| 624 | 593 | |[PCDHB5](PCDHB5)|3|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|| |
| 625 | 594 | |[PCDHGA2](PCDHGA2)|3|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|| |
| 595 | +|[PDE1C](PDE1C)|3|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|| |
|
| 596 | +|[PDE4DIP](PDE4DIP)|3|[Chapuy et al](papers/chapuyMolecularSubtypesDiffuse2018b)[@chapuyMolecularSubtypesDiffuse2018b]|| |
|
| 626 | 597 | |[PDGFRA](PDGFRA)|3|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|| |
| 627 | 598 | |[PDGFRB](PDGFRB)|3|[Fan et al](papers/fanComprehensiveCharacterizationDriver2020b)[@fanComprehensiveCharacterizationDriver2020b]|| |
| 628 | 599 | |[PDIA2](PDIA2)|3|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|| |
| ... | ... | @@ -630,12 +601,16 @@ DLBCL-WGS/exome, Pararajalingam 2020, 2 |
| 630 | 601 | |[PDZRN4](PDZRN4)|3|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|| |
| 631 | 602 | |[PFN1](PFN1)|3|[Fan et al](papers/fanComprehensiveCharacterizationDriver2020b)[@fanComprehensiveCharacterizationDriver2020b]|| |
| 632 | 603 | |[PGR](PGR)|3|[Fan et al](papers/fanComprehensiveCharacterizationDriver2020b)[@fanComprehensiveCharacterizationDriver2020b]|| |
| 604 | +|[PHF6](PHF6)|3|[Reddy et al](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|[@thomasGeneticSubgroupsInform2023]| |
|
| 605 | +|[PIK3CD](PIK3CD)|3|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|| |
|
| 606 | +|[PKD1](PKD1)|3|[Morin et al](papers/morinMutationalStructuralAnalysis2013)[@morinMutationalStructuralAnalysis2013]|| |
|
| 633 | 607 | |[PLA2G4B](PLA2G4B)|3|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|| |
| 634 | 608 | |[PLCB4](PLCB4)|3|[Fan et al](papers/fanComprehensiveCharacterizationDriver2020b)[@fanComprehensiveCharacterizationDriver2020b]|| |
| 635 | 609 | |[PLCG2](PLCG2)|3|[Fan et al](papers/fanComprehensiveCharacterizationDriver2020b)[@fanComprehensiveCharacterizationDriver2020b]|[@paneaWholeGenomeLandscape2019]| |
| 636 | 610 | |[PLEKHA7](PLEKHA7)|3|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|| |
| 637 | 611 | |[PNLIPRP1](PNLIPRP1)|3|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|| |
| 638 | 612 | |[PNPT1](PNPT1)|3|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|| |
| 613 | +|[POGZ](POGZ)|3|[Morin et al](papers/morinMutationalStructuralAnalysis2013)[@morinMutationalStructuralAnalysis2013]|| |
|
| 639 | 614 | |[POLD3](POLD3)|3|[Fan et al](papers/fanComprehensiveCharacterizationDriver2020b)[@fanComprehensiveCharacterizationDriver2020b]|| |
| 640 | 615 | |[POLE](POLE)|3|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|| |
| 641 | 616 | |[POLQ](POLQ)|3|[Fan et al](papers/fanComprehensiveCharacterizationDriver2020b)[@fanComprehensiveCharacterizationDriver2020b]|| |
| ... | ... | @@ -649,18 +624,23 @@ DLBCL-WGS/exome, Pararajalingam 2020, 2 |
| 649 | 624 | |[PRSS7](PRSS7)|3|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|| |
| 650 | 625 | |[PTCH1](PTCH1)|3|[Fan et al](papers/fanComprehensiveCharacterizationDriver2020b)[@fanComprehensiveCharacterizationDriver2020b]|| |
| 651 | 626 | |[PTPN14](PTPN14)|3|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|| |
| 627 | +|[PTPN23](PTPN23)|3|[Morin et al](papers/morinMutationalStructuralAnalysis2013)[@morinMutationalStructuralAnalysis2013]|| |
|
| 652 | 628 | |[PTPRF](PTPRF)|3|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|| |
| 629 | +|[PTPRK](PTPRK)|3|[Reddy et al](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|| |
|
| 653 | 630 | |[PTPRT](PTPRT)|3|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|| |
| 654 | 631 | |[PXK](PXK)|3|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|| |
| 655 | 632 | |[RAB3GAP1](RAB3GAP1)|3|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|| |
| 633 | +|[RAD9A](RAD9A)|3|[Chapuy et al](papers/chapuyMolecularSubtypesDiffuse2018b)[@chapuyMolecularSubtypesDiffuse2018b]|| |
|
| 656 | 634 | |[RAF1](RAF1)|3|[Fan et al](papers/fanComprehensiveCharacterizationDriver2020b)[@fanComprehensiveCharacterizationDriver2020b]|[@jalladesExomeSequencingIdentifies2017]| |
| 657 | 635 | |[RAPGEF2](RAPGEF2)|3|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|| |
| 658 | 636 | |[RAPGEF3](RAPGEF3)|3|[Fan et al](papers/fanComprehensiveCharacterizationDriver2020b)[@fanComprehensiveCharacterizationDriver2020b]|| |
| 637 | +|[RARA](RARA)|3|[Reddy et al](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|| |
|
| 659 | 638 | |[RBM15B](RBM15B)|3|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|| |
| 660 | 639 | |[RECQL4](RECQL4)|3|[Fan et al](papers/fanComprehensiveCharacterizationDriver2020b)[@fanComprehensiveCharacterizationDriver2020b]|| |
| 661 | 640 | |[RELN](RELN)|3|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|[@sarkozyMutationalLandscapeGray2021a]| |
| 662 | 641 | |[RET](RET)|3|[Fan et al](papers/fanComprehensiveCharacterizationDriver2020b)[@fanComprehensiveCharacterizationDriver2020b]|[@loveGeneticLandscapeMutations2012]| |
| 663 | 642 | |[RFC1](RFC1)|3|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|| |
| 643 | +|[RGS1](RGS1)|3|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|[@mottokIntegrativeGenomicAnalysis2019b]| |
|
| 664 | 644 | |[RHPN2](RHPN2)|3|[Fan et al](papers/fanComprehensiveCharacterizationDriver2020b)[@fanComprehensiveCharacterizationDriver2020b]|| |
| 665 | 645 | |[RIF1](RIF1)|3|[Fan et al](papers/fanComprehensiveCharacterizationDriver2020b)[@fanComprehensiveCharacterizationDriver2020b]|| |
| 666 | 646 | |[RIMS4](RIMS4)|3|[Fan et al](papers/fanComprehensiveCharacterizationDriver2020b)[@fanComprehensiveCharacterizationDriver2020b]|| |
| ... | ... | @@ -668,10 +648,13 @@ DLBCL-WGS/exome, Pararajalingam 2020, 2 |
| 668 | 648 | |[RPTOR](RPTOR)|3|[Fan et al](papers/fanComprehensiveCharacterizationDriver2020b)[@fanComprehensiveCharacterizationDriver2020b]|| |
| 669 | 649 | |[RSL1D1](RSL1D1)|3|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|| |
| 670 | 650 | |[RUNDC1](RUNDC1)|3|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|| |
| 651 | +|[RUNX1](RUNX1)|3|[Reddy et al](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|| |
|
| 671 | 652 | |[RYR1](RYR1)|3|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|| |
| 672 | 653 | |[SAPS3](SAPS3)|3|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|| |
| 654 | +|[SARM1](SARM1)|3|[Morin et al](papers/morinMutationalStructuralAnalysis2013)[@morinMutationalStructuralAnalysis2013]|| |
|
| 673 | 655 | |[SCYL1](SCYL1)|3|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|| |
| 674 | 656 | |[SEMA3A](SEMA3A)|3|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|| |
| 657 | +|[SEMA3D](SEMA3D)|3|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|| |
|
| 675 | 658 | |[SEMA5A](SEMA5A)|3|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|| |
| 676 | 659 | |[SERINC2](SERINC2)|3|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|| |
| 677 | 660 | |[SH3PXD2B](SH3PXD2B)|3|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|| |
| ... | ... | @@ -689,6 +672,7 @@ DLBCL-WGS/exome, Pararajalingam 2020, 2 |
| 689 | 672 | |[SPTBN1](SPTBN1)|3|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|| |
| 690 | 673 | |[ST8SIA3](ST8SIA3)|3|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|| |
| 691 | 674 | |[SULF2](SULF2)|3|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|| |
| 675 | +|[SYK](SYK)|3|[Reddy et al](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|| |
|
| 692 | 676 | |[TAF1L](TAF1L)|3|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|| |
| 693 | 677 | |[TAF4B](TAF4B)|3|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|| |
| 694 | 678 | |[TECRL](TECRL)|3|[Fan et al](papers/fanComprehensiveCharacterizationDriver2020b)[@fanComprehensiveCharacterizationDriver2020b]|| |
| ... | ... | @@ -716,6 +700,7 @@ DLBCL-WGS/exome, Pararajalingam 2020, 2 |
| 716 | 700 | |[UQCRC1](UQCRC1)|3|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|| |
| 717 | 701 | |[VANGL1](VANGL1)|3|[Fan et al](papers/fanComprehensiveCharacterizationDriver2020b)[@fanComprehensiveCharacterizationDriver2020b]|| |
| 718 | 702 | |[VPS13A](VPS13A)|3|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|| |
| 703 | +|[WAC](WAC)|3|[Reddy et al](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|[@rossiCodingGenomeSplenic2012c]| |
|
| 719 | 704 | |[WDR65](WDR65)|3|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|| |
| 720 | 705 | |[WDR66](WDR66)|3|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|| |
| 721 | 706 | |[WDR67](WDR67)|3|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|| |
| ... | ... | @@ -723,8 +708,11 @@ DLBCL-WGS/exome, Pararajalingam 2020, 2 |
| 723 | 708 | |[WNK4](WNK4)|3|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|| |
| 724 | 709 | |[WT1](WT1)|3|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|| |
| 725 | 710 | |[XDH](XDH)|3|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|| |
| 711 | +|[ZBTB7A](ZBTB7A)|3|[Reddy et al](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|[@burkhardtClinicalRelevanceMolecular2022b]| |
|
| 712 | +|[ZFAT](ZFAT)|3|[Reddy et al](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|| |
|
| 726 | 713 | |[ZIC4](ZIC4)|3|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|| |
| 727 | 714 | |[ZMYM4](ZMYM4)|3|[Fan et al](papers/fanComprehensiveCharacterizationDriver2020b)[@fanComprehensiveCharacterizationDriver2020b]|| |
| 715 | +|[ZNF354A](ZNF354A)|3|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|| |
|
| 728 | 716 | |[ZNF366](ZNF366)|3|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|| |
| 729 | 717 | |[ZNF439](ZNF439)|3|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|| |
| 730 | 718 | |[ZNF474](ZNF474)|3|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|| |
| ... | ... | @@ -733,52 +721,6 @@ DLBCL-WGS/exome, Pararajalingam 2020, 2 |
| 733 | 721 | |[ZNF814](ZNF814)|3|[Fan et al](papers/fanComprehensiveCharacterizationDriver2020b)[@fanComprehensiveCharacterizationDriver2020b]|| |
| 734 | 722 | |[ZNF91](ZNF91)|3|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|| |
| 735 | 723 | |[ZP1](ZP1)|3|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|| |
| 736 | -|[ANKRD17](ANKRD17)|2-F|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|| |
|
| 737 | -|[ARID1B](ARID1B)|2-F|[Reddy et al](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|| |
|
| 738 | -|[CBLB](CBLB)|2-F|[Reddy et al](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|| |
|
| 739 | -|[CCL4](CCL4)|2-F|[Chapuy et al](papers/chapuyMolecularSubtypesDiffuse2018b)[@chapuyMolecularSubtypesDiffuse2018b]|| |
|
| 740 | -|[CDC73](CDC73)|2-F|[Reddy et al](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|[@loveGeneticLandscapeMutations2012]| |
|
| 741 | -|[CDH8](CDH8)|2-F|[Reddy et al](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|[@zhangGenomicLandscapeMantle2014]| |
|
| 742 | -|[CHD1](CHD1)|2-F|[Reddy et al](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|| |
|
| 743 | -|[CHST2](CHST2)|2-F|[Reddy et al](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|| |
|
| 744 | -|[DCAF6](DCAF6)|2-F|[Reddy et al](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|| |
|
| 745 | -|[DDX10](DDX10)|2-F|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|| |
|
| 746 | -|[DICER1](DICER1)|2-F|[Reddy et al](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|| |
|
| 747 | -|[DNMT3A](DNMT3A)|2-F|[Reddy et al](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|| |
|
| 748 | -|[FAM38B](FAM38B)|2-F|[Morin et al](papers/morinMutationalStructuralAnalysis2013)[@morinMutationalStructuralAnalysis2013]|| |
|
| 749 | -|[FNDC1](FNDC1)|2-F|[Morin et al](papers/morinMutationalStructuralAnalysis2013)[@morinMutationalStructuralAnalysis2013]|| |
|
| 750 | -|[FUT5](FUT5)|2-F|[Chapuy et al](papers/chapuyMolecularSubtypesDiffuse2018b)[@chapuyMolecularSubtypesDiffuse2018b]|| |
|
| 751 | -|[GAK](GAK)|2-F|[Hubschmann et al](papers/hubschmannMutationalMechanismsShaping2021b)[@hubschmannMutationalMechanismsShaping2021b]|| |
|
| 752 | -|[GNAS](GNAS)|2-F|[Reddy et al](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|| |
|
| 753 | -|[HLA-DQA1](HLA-DQA1)|2-F|[Hubschmann et al](papers/hubschmannMutationalMechanismsShaping2021b)[@hubschmannMutationalMechanismsShaping2021b]|| |
|
| 754 | -|[HRAS](HRAS)|2-F|[Reddy et al](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|[@jalladesExomeSequencingIdentifies2017]| |
|
| 755 | -|[IER2](IER2)|2-F|[Morin et al](papers/morinMutationalStructuralAnalysis2013)[@morinMutationalStructuralAnalysis2013]|| |
|
| 756 | -|[LIN54](LIN54)|2-F|[Reddy et al](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|| |
|
| 757 | -|[MAP4K4](MAP4K4)|2-F|[Reddy et al](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|| |
|
| 758 | -|[MARK1](MARK1)|2-F|[Reddy et al](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|| |
|
| 759 | -|[MSH2](MSH2)|2-F|[Reddy et al](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|| |
|
| 760 | -|[MYB](MYB)|2-F|[Reddy et al](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|[@deschGenotypingCirculatingTumor2020]| |
|
| 761 | -|[NANOG](NANOG)|2-F|[Chapuy et al](papers/chapuyMolecularSubtypesDiffuse2018b)[@chapuyMolecularSubtypesDiffuse2018b]|| |
|
| 762 | -|[NCOR1](NCOR1)|2-F|[Reddy et al](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|| |
|
| 763 | -|[NFKB2](NFKB2)|2-F|[Reddy et al](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|[@mottokIntegrativeGenomicAnalysis2019b]| |
|
| 764 | -|[NLRP8](NLRP8)|2-F|[Chapuy et al](papers/chapuyMolecularSubtypesDiffuse2018b)[@chapuyMolecularSubtypesDiffuse2018b]|| |
|
| 765 | -|[NR2F2](NR2F2)|2-F|[Hubschmann et al](papers/hubschmannMutationalMechanismsShaping2021b)[@hubschmannMutationalMechanismsShaping2021b]|| |
|
| 766 | -|[PDE4DIP](PDE4DIP)|2-F|[Chapuy et al](papers/chapuyMolecularSubtypesDiffuse2018b)[@chapuyMolecularSubtypesDiffuse2018b]|| |
|
| 767 | -|[PHF6](PHF6)|2-F|[Reddy et al](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|[@thomasGeneticSubgroupsInform2023]| |
|
| 768 | -|[PIK3CD](PIK3CD)|2-F|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|| |
|
| 769 | -|[PKD1](PKD1)|2-F|[Morin et al](papers/morinMutationalStructuralAnalysis2013)[@morinMutationalStructuralAnalysis2013]|| |
|
| 770 | -|[POGZ](POGZ)|2-F|[Morin et al](papers/morinMutationalStructuralAnalysis2013)[@morinMutationalStructuralAnalysis2013]|| |
|
| 771 | -|[PTPN23](PTPN23)|2-F|[Morin et al](papers/morinMutationalStructuralAnalysis2013)[@morinMutationalStructuralAnalysis2013]|| |
|
| 772 | -|[PTPRK](PTPRK)|2-F|[Reddy et al](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|| |
|
| 773 | -|[RAD9A](RAD9A)|2-F|[Chapuy et al](papers/chapuyMolecularSubtypesDiffuse2018b)[@chapuyMolecularSubtypesDiffuse2018b]|| |
|
| 774 | -|[RARA](RARA)|2-F|[Reddy et al](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|| |
|
| 775 | -|[RUNX1](RUNX1)|2-F|[Reddy et al](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|| |
|
| 776 | -|[SARM1](SARM1)|2-F|[Morin et al](papers/morinMutationalStructuralAnalysis2013)[@morinMutationalStructuralAnalysis2013]|| |
|
| 777 | -|[SMEK1](SMEK1)|2-F|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|| |
|
| 778 | -|[SYK](SYK)|2-F|[Reddy et al](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|| |
|
| 779 | -|[WAC](WAC)|2-F|[Reddy et al](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|[@rossiCodingGenomeSplenic2012c]| |
|
| 780 | -|[ZBTB7A](ZBTB7A)|2-F|[Reddy et al](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|[@burkhardtClinicalRelevanceMolecular2022b]| |
|
| 781 | -|[ZFAT](ZFAT)|2-F|[Reddy et al](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|| |
|
| 782 | 724 | |
| 783 | 725 | |
| 784 | 726 | # References |
FL_genes.md
| ... | ... | @@ -15,101 +15,102 @@ link-citations: true |
| 15 | 15 | |
| 16 | 16 | |Gene|Tier| First FL evidence | Other entities | |
| 17 | 17 | |:-:|:-:|:--|:-| |
| 18 | -|[ACTB](ACTB)|1||[@wienandGenomicAnalysesFlowsorted2019b; @lohrDiscoveryPrioritizationSomatic2012a]| |
|
| 19 | -|[ARID1A](ARID1A)|1|[Krysiak et al](papers/krysiakRecurrentSomaticMutations2017b)[@krysiakRecurrentSomaticMutations2017b]|[@rossiCodingGenomeSplenic2012c; @zhangGeneticHeterogeneityDiffuse2013; @wienandGenomicAnalysesFlowsorted2019b; @loveGeneticLandscapeMutations2012]| |
|
| 18 | +|[ACTB](ACTB)|1||[@lohrDiscoveryPrioritizationSomatic2012a; @wienandGenomicAnalysesFlowsorted2019b]| |
|
| 19 | +|[ARID1A](ARID1A)|1|[Krysiak et al](papers/krysiakRecurrentSomaticMutations2017b)[@krysiakRecurrentSomaticMutations2017b]|[@rossiCodingGenomeSplenic2012c; @zhangGeneticHeterogeneityDiffuse2013; @loveGeneticLandscapeMutations2012; @wienandGenomicAnalysesFlowsorted2019b]| |
|
| 20 | 20 | |[ATP6AP1](ATP6AP1)|1|[Okosun et al](papers/okosunRecurrentMTORC1activatingRRAGC2016a)[@okosunRecurrentMTORC1activatingRRAGC2016a]|| |
| 21 | 21 | |[ATP6V1B2](ATP6V1B2)|1|[Okosun et al](papers/okosunRecurrentMTORC1activatingRRAGC2016a)[@okosunRecurrentMTORC1activatingRRAGC2016a]|| |
| 22 | 22 | |[B2M](B2M)|1|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]|[@reichelFlowSortingExome2015a; @pararajalingamCodingNoncodingDrivers2020]| |
| 23 | -|[BCL2](BCL2)|1-EE|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]|[@sarkozyMutationalLandscapeGray2021a; @tanakaFrequentIncidenceSomatic1992; @burkhardtClinicalRelevanceMolecular2022b]| |
|
| 24 | -|[BCL6](BCL6)|1||[@loveGeneticLandscapeMutations2012; @morinFrequentMutationHistonemodifying2011]| |
|
| 25 | -|[BCL7A](BCL7A)|1|[Krysiak et al](papers/krysiakRecurrentSomaticMutations2017b)[@krysiakRecurrentSomaticMutations2017b]|[@reichelFlowSortingExome2015a; @grandeGenomewideDiscoverySomatic2019; @arthurGenomewideDiscoverySomatic2018]| |
|
| 23 | +|[BCL2](BCL2)|1|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]|[@sarkozyMutationalLandscapeGray2021a; @tanakaFrequentIncidenceSomatic1992; @burkhardtClinicalRelevanceMolecular2022b]| |
|
| 24 | +|[BCL6](BCL6)|1||[@morinFrequentMutationHistonemodifying2011; @loveGeneticLandscapeMutations2012]| |
|
| 25 | +|[BCL7A](BCL7A)|1|[Krysiak et al](papers/krysiakRecurrentSomaticMutations2017b)[@krysiakRecurrentSomaticMutations2017b]|[@zhangGeneticHeterogeneityDiffuse2013; @grandeGenomewideDiscoverySomatic2019; @reichelFlowSortingExome2015a]| |
|
| 26 | 26 | |[BIRC6](BIRC6)|1||[@sarkozyMutationalLandscapeGray2021a; @reddyGeneticFunctionalDrivers2017]| |
| 27 | -|[BTG1](BTG1)|1||[@burkhardtClinicalRelevanceMolecular2022b; @morinFrequentMutationHistonemodifying2011; @sarkozyMutationalLandscapeGray2021a]| |
|
| 27 | +|[BTG1](BTG1)|1||[@sarkozyMutationalLandscapeGray2021a; @morinFrequentMutationHistonemodifying2011; @burkhardtClinicalRelevanceMolecular2022b]| |
|
| 28 | 28 | |[BTG2](BTG2)|1|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]|[@loveGeneticLandscapeMutations2012]| |
| 29 | 29 | |[BTK](BTK)|1|[Krysiak et al](papers/krysiakRecurrentSomaticMutations2017b)[@krysiakRecurrentSomaticMutations2017b]|[@albuquerqueEnhancingKnowledgeDiscovery2017a]| |
| 30 | -|[CARD11](CARD11)|1|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]|[@lenzOncogenicCARD11Mutations2008; @yanBCRTLRSignaling2012a; @wuGeneticHeterogeneityPrimary2016; @paneaWholeGenomeLandscape2019]| |
|
| 31 | -|[CCND3](CCND3)|1|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]|[@richterRecurrentMutationID32012a; @deschGenotypingCirculatingTumor2020; @jalladesExomeSequencingIdentifies2017]| |
|
| 30 | +|[CARD11](CARD11)|1|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]|[@wuGeneticHeterogeneityPrimary2016; @yanBCRTLRSignaling2012a; @lenzOncogenicCARD11Mutations2008]| |
|
| 31 | +|[CCND3](CCND3)|1|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]|[@richterRecurrentMutationID32012a; @jalladesExomeSequencingIdentifies2017; @deschGenotypingCirculatingTumor2020]| |
|
| 32 | 32 | |[CD83](CD83)|1|[Russler et al](papers/russler-germainMutationsAssociatedProgression2023b)[@russler-germainMutationsAssociatedProgression2023b]|[@morinMutationalStructuralAnalysis2013; @dunsCharacterizationDLBCLPMBL2021b; @paneaWholeGenomeLandscape2019]| |
| 33 | -|[CREBBP](CREBBP)|1-EE|[Pasqualucci et al](papers/pasqualucciInactivatingMutationsAcetyltransferase2011a)[@pasqualucciInactivatingMutationsAcetyltransferase2011a]|[@dunsCharacterizationDLBCLPMBL2021b; @loveGeneticLandscapeMutations2012; @parryWholeExomeSequencing2013]| |
|
| 33 | +|[CREBBP](CREBBP)|1|[Pasqualucci et al](papers/pasqualucciInactivatingMutationsAcetyltransferase2011a)[@pasqualucciInactivatingMutationsAcetyltransferase2011a]|[@loveGeneticLandscapeMutations2012; @parryWholeExomeSequencing2013; @dunsCharacterizationDLBCLPMBL2021b]| |
|
| 34 | 34 | |[CTSS](CTSS)|1|[Bararia et al](papers/barariaCathepsinAlterationsInduce2020c)[@barariaCathepsinAlterationsInduce2020c]|| |
| 35 | -|[DTX1](DTX1)|1||[@schmitzGeneticsPathogenesisDiffuse2018a; @rossiCodingGenomeSplenic2012c; @gomezUltraDeepSequencingReveals2023; @loveGeneticLandscapeMutations2012]| |
|
| 36 | -|[EBF1](EBF1)|1||[@reichelFlowSortingExome2015a; @thomasGeneticSubgroupsInform2023; @bohleRoleEarlyBcell2013]| |
|
| 35 | +|[DTX1](DTX1)|1||[@gomezUltraDeepSequencingReveals2023; @rossiCodingGenomeSplenic2012c; @zhangGeneticHeterogeneityDiffuse2013; @loveGeneticLandscapeMutations2012]| |
|
| 36 | +|[EBF1](EBF1)|1||[@bohleRoleEarlyBcell2013; @reichelFlowSortingExome2015a; @thomasGeneticSubgroupsInform2023]| |
|
| 37 | 37 | |[EEF1A1](EEF1A1)|1|[Hubschmann et al](papers/hubschmannMutationalMechanismsShaping2021b)[@hubschmannMutationalMechanismsShaping2021b]|[@reichelFlowSortingExome2015a]| |
| 38 | -|[EP300](EP300)|1-EE|[Pasqualucci et al](papers/pasqualucciInactivatingMutationsAcetyltransferase2011a)[@pasqualucciInactivatingMutationsAcetyltransferase2011a]|[@paneaWholeGenomeLandscape2019; @rossiCodingGenomeSplenic2012c]| |
|
| 39 | -|[EZH2](EZH2)|1-EE|[Morin et al](papers/morinSomaticMutationsAltering2010a)[@morinSomaticMutationsAltering2010a]|[@mottokIntegrativeGenomicAnalysis2019b; @loveGeneticLandscapeMutations2012]| |
|
| 40 | -|[FAS](FAS)|1||[@schollMutationsRegionFAS2007; @spinaGeneticsNodalMarginal2016b]| |
|
| 41 | -|[FOXO1](FOXO1)|1-EE|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]|[@schmitzBurkittLymphomaPathogenesis2012; @dunsCharacterizationDLBCLPMBL2021b]| |
|
| 42 | -|[GNA13](GNA13)|1|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]|[@reichelFlowSortingExome2015a; @loveGeneticLandscapeMutations2012]| |
|
| 43 | -|[GNAI2](GNAI2)|1||[@morinMutationalStructuralAnalysis2013; @grandeGenomewideDiscoverySomatic2019]| |
|
| 44 | -|[HIST1H1B](HIST1H1B)|1|[Krysiak et al](papers/krysiakRecurrentSomaticMutations2017b)[@krysiakRecurrentSomaticMutations2017b]|[@chapuyMolecularSubtypesDiffuse2018b; @sarkozyMutationalLandscapeGray2021a]| |
|
| 38 | +|[EP300](EP300)|1|[Pasqualucci et al](papers/pasqualucciInactivatingMutationsAcetyltransferase2011a)[@pasqualucciInactivatingMutationsAcetyltransferase2011a]|[@rossiCodingGenomeSplenic2012c]| |
|
| 39 | +|[EZH2](EZH2)|1|[Morin et al](papers/morinSomaticMutationsAltering2010a)[@morinSomaticMutationsAltering2010a]|[@loveGeneticLandscapeMutations2012; @mottokIntegrativeGenomicAnalysis2019b]| |
|
| 40 | +|[FAS](FAS)|1||[@spinaGeneticsNodalMarginal2016b; @schollMutationsRegionFAS2007]| |
|
| 41 | +|[FOXO1](FOXO1)|1|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]|[@dunsCharacterizationDLBCLPMBL2021b; @schmitzBurkittLymphomaPathogenesis2012]| |
|
| 42 | +|[GNA13](GNA13)|1|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]|[@loveGeneticLandscapeMutations2012; @reichelFlowSortingExome2015a]| |
|
| 43 | +|[GNAI2](GNAI2)|1||[@grandeGenomewideDiscoverySomatic2019; @morinMutationalStructuralAnalysis2013]| |
|
| 44 | +|[HIST1H1B](HIST1H1B)|1|[Krysiak et al](papers/krysiakRecurrentSomaticMutations2017b)[@krysiakRecurrentSomaticMutations2017b]|[@sarkozyMutationalLandscapeGray2021a; @chapuyMolecularSubtypesDiffuse2018b]| |
|
| 45 | 45 | |[HIST1H1C](HIST1H1C)|1|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]|[@paneaWholeGenomeLandscape2019]| |
| 46 | 46 | |[HIST1H1D](HIST1H1D)|1|[Krysiak et al](papers/krysiakRecurrentSomaticMutations2017b)[@krysiakRecurrentSomaticMutations2017b]|[@morinMutationalStructuralAnalysis2013; @jalladesExomeSequencingIdentifies2017]| |
| 47 | -|[HIST1H1E](HIST1H1E)|1|[Krysiak et al](papers/krysiakRecurrentSomaticMutations2017b)[@krysiakRecurrentSomaticMutations2017b]|[@grandeGenomewideDiscoverySomatic2019; @reichelFlowSortingExome2015a; @lohrDiscoveryPrioritizationSomatic2012a]| |
|
| 47 | +|[HIST1H1E](HIST1H1E)|1|[Krysiak et al](papers/krysiakRecurrentSomaticMutations2017b)[@krysiakRecurrentSomaticMutations2017b]|[@reichelFlowSortingExome2015a; @grandeGenomewideDiscoverySomatic2019; @lohrDiscoveryPrioritizationSomatic2012a]| |
|
| 48 | 48 | |[HIST1H2AC](HIST1H2AC)|1|[Krysiak et al](papers/krysiakRecurrentSomaticMutations2017b)[@krysiakRecurrentSomaticMutations2017b]|[@morinMutationalStructuralAnalysis2013]| |
| 49 | -|[HIST1H2AG](HIST1H2AG)|1|[Krysiak et al](papers/krysiakRecurrentSomaticMutations2017b)[@krysiakRecurrentSomaticMutations2017b]|[@paneaWholeGenomeLandscape2019; @rossiCodingGenomeSplenic2012c; @morinMutationalStructuralAnalysis2013]| |
|
| 50 | -|[HIST1H2AM](HIST1H2AM)|1|[Krysiak et al](papers/krysiakRecurrentSomaticMutations2017b)[@krysiakRecurrentSomaticMutations2017b]|[@paneaWholeGenomeLandscape2019]| |
|
| 51 | -|[HIST1H2BC](HIST1H2BC)|1|[Krysiak et al](papers/krysiakRecurrentSomaticMutations2017b)[@krysiakRecurrentSomaticMutations2017b]|[@mottokIntegrativeGenomicAnalysis2019b; @lohrDiscoveryPrioritizationSomatic2012a]| |
|
| 49 | +|[HIST1H2AG](HIST1H2AG)|1|[Krysiak et al](papers/krysiakRecurrentSomaticMutations2017b)[@krysiakRecurrentSomaticMutations2017b]|[@morinMutationalStructuralAnalysis2013; @rossiCodingGenomeSplenic2012c; @paneaWholeGenomeLandscape2019]| |
|
| 50 | +|[HIST1H2AM](HIST1H2AM)|1|[Krysiak et al](papers/krysiakRecurrentSomaticMutations2017b)[@krysiakRecurrentSomaticMutations2017b]|[@chapuyMolecularSubtypesDiffuse2018b; @paneaWholeGenomeLandscape2019]| |
|
| 51 | +|[HIST1H2BC](HIST1H2BC)|1|[Krysiak et al](papers/krysiakRecurrentSomaticMutations2017b)[@krysiakRecurrentSomaticMutations2017b]|[@lohrDiscoveryPrioritizationSomatic2012a; @mottokIntegrativeGenomicAnalysis2019b]| |
|
| 52 | 52 | |[HIST1H2BD](HIST1H2BD)|1|[Krysiak et al](papers/krysiakRecurrentSomaticMutations2017b)[@krysiakRecurrentSomaticMutations2017b]|| |
| 53 | 53 | |[HIST1H2BG](HIST1H2BG)|1|[Krysiak et al](papers/krysiakRecurrentSomaticMutations2017b)[@krysiakRecurrentSomaticMutations2017b]|| |
| 54 | -|[HIST1H3B](HIST1H3B)|1||[@lohrDiscoveryPrioritizationSomatic2012a; @reichelFlowSortingExome2015a]| |
|
| 54 | +|[HIST1H3B](HIST1H3B)|1||[@reichelFlowSortingExome2015a; @lohrDiscoveryPrioritizationSomatic2012a]| |
|
| 55 | 55 | |[HIST1H3G](HIST1H3G)|1|[Krysiak et al](papers/krysiakRecurrentSomaticMutations2017b)[@krysiakRecurrentSomaticMutations2017b]|| |
| 56 | -|[HVCN1](HVCN1)|1|[Krysiak et al](papers/krysiakRecurrentSomaticMutations2017b)[@krysiakRecurrentSomaticMutations2017b]|| |
|
| 56 | +|[HVCN1](HVCN1)|1|[Krysiak et al](papers/krysiakRecurrentSomaticMutations2017b)[@krysiakRecurrentSomaticMutations2017b]|[@chapuyMolecularSubtypesDiffuse2018b]| |
|
| 57 | 57 | |[IRF4](IRF4)|1||[@morinFrequentMutationHistonemodifying2011; @mottokIntegrativeGenomicAnalysis2019b]| |
| 58 | 58 | |[IRF8](IRF8)|1|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]|[@mottokIntegrativeGenomicAnalysis2019b; @paneaWholeGenomeLandscape2019]| |
| 59 | 59 | |[ITPKB](ITPKB)|1||[@schmitzGeneticsPathogenesisDiffuse2018a; @reichelFlowSortingExome2015a]| |
| 60 | -|[KLF2](KLF2)|1||[@pasqualucciAnalysisCodingGenome2011; @jalladesExomeSequencingIdentifies2017; @deschGenotypingCirculatingTumor2020]| |
|
| 61 | -|[KLHL6](KLHL6)|1|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]|[@paneaWholeGenomeLandscape2019; @ganapathiGeneticLandscapeDural2016]| |
|
| 62 | -|[KMT2D](KMT2D)|1|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]|[@grandeGenomewideDiscoverySomatic2019; @rossiCodingGenomeSplenic2012c; @deschGenotypingCirculatingTumor2020; @beaLandscapeSomaticMutations2013]| |
|
| 63 | -|[LTB](LTB)|1||[@chapuyMolecularSubtypesDiffuse2018b; @paneaWholeGenomeLandscape2019; @deschGenotypingCirculatingTumor2020]| |
|
| 60 | +|[KLF2](KLF2)|1||[@pasqualucciAnalysisCodingGenome2011; @deschGenotypingCirculatingTumor2020; @jalladesExomeSequencingIdentifies2017]| |
|
| 61 | +|[KLHL6](KLHL6)|1|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]|[@ganapathiGeneticLandscapeDural2016]| |
|
| 62 | +|[KMT2D](KMT2D)|1|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]|[@beaLandscapeSomaticMutations2013; @deschGenotypingCirculatingTumor2020; @grandeGenomewideDiscoverySomatic2019; @rossiCodingGenomeSplenic2012c]| |
|
| 63 | +|[LTB](LTB)|1||[@chapuyMolecularSubtypesDiffuse2018b; @deschGenotypingCirculatingTumor2020]| |
|
| 64 | 64 | |[MAP2K1](MAP2K1)|1|[Louissaint et al](papers/louissaintPediatrictypeNodalFollicular2016a)[@louissaintPediatrictypeNodalFollicular2016a]|[@shinBRAFV600EMAP2K12015]| |
| 65 | 65 | |[MEF2B](MEF2B)|1|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]|[@beaLandscapeSomaticMutations2013]| |
| 66 | 66 | |[MEF2C](MEF2C)|1||[@arthurGenomewideDiscoverySomatic2018]| |
| 67 | 67 | |[PCLO](PCLO)|1||[@lohrDiscoveryPrioritizationSomatic2012a]| |
| 68 | -|[PIM1](PIM1)|1||[@dunsCharacterizationDLBCLPMBL2021b; @burkhardtClinicalRelevanceMolecular2022b; @pasqualucciHypermutationMultipleProtooncogenes2001a]| |
|
| 69 | -|[POU2AF1](POU2AF1)|1|[Krysiak et al](papers/krysiakRecurrentSomaticMutations2017b)[@krysiakRecurrentSomaticMutations2017b]|| |
|
| 68 | +|[PIM1](PIM1)|1||[@dunsCharacterizationDLBCLPMBL2021b; @pasqualucciHypermutationMultipleProtooncogenes2001a; @burkhardtClinicalRelevanceMolecular2022b]| |
|
| 69 | +|[POU2AF1](POU2AF1)|1|[Krysiak et al](papers/krysiakRecurrentSomaticMutations2017b)[@krysiakRecurrentSomaticMutations2017b]|[@chapuyMolecularSubtypesDiffuse2018b]| |
|
| 70 | 70 | |[POU2F2](POU2F2)|1|[Krysiak et al](papers/krysiakRecurrentSomaticMutations2017b)[@krysiakRecurrentSomaticMutations2017b]|[@lohrDiscoveryPrioritizationSomatic2012a]| |
| 71 | 71 | |[PTPRD](PTPRD)|1||[@spinaGeneticsNodalMarginal2016b]| |
| 72 | 72 | |[RRAGC](RRAGC)|1||[@okosunRecurrentMTORC1activatingRRAGC2016a]| |
| 73 | -|[S1PR2](S1PR2)|1||[@morinFrequentMutationHistonemodifying2011; @muppidiLossSignalingGa132014b]| |
|
| 73 | +|[S1PR2](S1PR2)|1||[@muppidiLossSignalingGa132014b; @morinFrequentMutationHistonemodifying2011]| |
|
| 74 | 74 | |[SGK1](SGK1)|1|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]|[@dunsCharacterizationDLBCLPMBL2021b]| |
| 75 | -|[SMARCA4](SMARCA4)|1|[Krysiak et al](papers/krysiakRecurrentSomaticMutations2017b)[@krysiakRecurrentSomaticMutations2017b]|[@nadeuGenomicEpigenomicInsights2020b; @lohrDiscoveryPrioritizationSomatic2012a; @richterRecurrentMutationID32012a]| |
|
| 75 | +|[SMARCA4](SMARCA4)|1|[Krysiak et al](papers/krysiakRecurrentSomaticMutations2017b)[@krysiakRecurrentSomaticMutations2017b]|[@richterRecurrentMutationID32012a; @lohrDiscoveryPrioritizationSomatic2012a; @nadeuGenomicEpigenomicInsights2020b]| |
|
| 76 | 76 | |[SOCS1](SOCS1)|1||[@morinFrequentMutationHistonemodifying2011; @wenigerMutationsTumorSuppressor2006a]| |
| 77 | 77 | |[STAT6](STAT6)|1|[Yildiz et al](papers/yildizActivatingSTAT6Mutations2015c)[@yildizActivatingSTAT6Mutations2015c]|[@ritzRecurrentMutationsSTAT62009a]| |
| 78 | -|[TBL1XR1](TBL1XR1)|1||[@rossiCodingGenomeSplenic2012c; @lohrDiscoveryPrioritizationSomatic2012a]| |
|
| 78 | +|[TBL1XR1](TBL1XR1)|1||[@lohrDiscoveryPrioritizationSomatic2012a; @rossiCodingGenomeSplenic2012c]| |
|
| 79 | 79 | |[TMSB4X](TMSB4X)|1||[@albuquerqueEnhancingKnowledgeDiscovery2017a]| |
| 80 | -|[TNFAIP3](TNFAIP3)|1||[@compagnoMutationsMultipleGenes2009a; @rossiAlterationBIRC3Multiple2011a; @schmitzTNFAIP3A20Tumor2009a]| |
|
| 81 | -|[TNFRSF14](TNFRSF14)|1|[Cheung et al](papers/cheungAcquiredTNFRSF14Mutations2010a)[@cheungAcquiredTNFRSF14Mutations2010a]|[@morinFrequentMutationHistonemodifying2011; @spinaGeneticsNodalMarginal2016b]| |
|
| 82 | -|[TP53](TP53)|1|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]|[@wildaInactivationARFMDM2p53Pathway2004; @beaLandscapeSomaticMutations2013; @tiacciPervasiveMutationsJAKSTAT2018b; @lohrDiscoveryPrioritizationSomatic2012a; @rossiCodingGenomeSplenic2012c]| |
|
| 80 | +|[TNFAIP3](TNFAIP3)|1||[@rossiAlterationBIRC3Multiple2011a; @compagnoMutationsMultipleGenes2009a; @schmitzTNFAIP3A20Tumor2009a]| |
|
| 81 | +|[TNFRSF14](TNFRSF14)|1|[Cheung et al](papers/cheungAcquiredTNFRSF14Mutations2010a)[@cheungAcquiredTNFRSF14Mutations2010a]|[@spinaGeneticsNodalMarginal2016b; @morinFrequentMutationHistonemodifying2011]| |
|
| 82 | +|[TP53](TP53)|1|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]|[@wildaInactivationARFMDM2p53Pathway2004; @lohrDiscoveryPrioritizationSomatic2012a; @rossiCodingGenomeSplenic2012c; @tiacciPervasiveMutationsJAKSTAT2018b; @beaLandscapeSomaticMutations2013]| |
|
| 83 | 83 | |[VMA21](VMA21)|1|[Hubschmann et al](papers/hubschmannMutationalMechanismsShaping2021b)[@hubschmannMutationalMechanismsShaping2021b]|| |
| 84 | 84 | |
| 85 | 85 | ## Tier 2 FL genes |
| 86 | 86 | |
| 87 | -### *50 total* |
|
| 87 | +### *49 total* |
|
| 88 | 88 | |
| 89 | 89 | |Gene|Tier| First FL evidence | Other entities | |
| 90 | 90 | |:-:|:-:|:--|:-| |
| 91 | 91 | |[ABL2](ABL2)|2|[Russler et al](papers/russler-germainMutationsAssociatedProgression2023b)[@russler-germainMutationsAssociatedProgression2023b]|| |
| 92 | -|[ACTG1](ACTG1)|2|[Hubschmann et al](papers/hubschmannMutationalMechanismsShaping2021b)[@hubschmannMutationalMechanismsShaping2021b]|[@spinaGeneticsNodalMarginal2016b; @deschGenotypingCirculatingTumor2020]| |
|
| 92 | +|[ACTG1](ACTG1)|2|[Hubschmann et al](papers/hubschmannMutationalMechanismsShaping2021b)[@hubschmannMutationalMechanismsShaping2021b]|[@deschGenotypingCirculatingTumor2020; @spinaGeneticsNodalMarginal2016b]| |
|
| 93 | 93 | |[ATP6V1A](ATP6V1A)|2|[Hubschmann et al](papers/hubschmannMutationalMechanismsShaping2021b)[@hubschmannMutationalMechanismsShaping2021b]|| |
| 94 | -|[BCL10](BCL10)|2|[Russler et al](papers/russler-germainMutationsAssociatedProgression2023b)[@russler-germainMutationsAssociatedProgression2023b]|[@morinFrequentMutationHistonemodifying2011; @spinaGeneticsNodalMarginal2016b]| |
|
| 94 | +|[BCL10](BCL10)|2|[Russler et al](papers/russler-germainMutationsAssociatedProgression2023b)[@russler-germainMutationsAssociatedProgression2023b]|[@spinaGeneticsNodalMarginal2016b; @morinFrequentMutationHistonemodifying2011]| |
|
| 95 | 95 | |[CD70](CD70)|2|[Russler et al](papers/russler-germainMutationsAssociatedProgression2023b)[@russler-germainMutationsAssociatedProgression2023b]|[@morinFrequentMutationHistonemodifying2011]| |
| 96 | -|[CD79B](CD79B)|2||[@morinFrequentMutationHistonemodifying2011; @paneaWholeGenomeLandscape2019]| |
|
| 96 | +|[CD79B](CD79B)|2||[@paneaWholeGenomeLandscape2019; @morinFrequentMutationHistonemodifying2011]| |
|
| 97 | 97 | |[CDC42BPB](CDC42BPB)|2|[Hubschmann et al](papers/hubschmannMutationalMechanismsShaping2021b)[@hubschmannMutationalMechanismsShaping2021b]|[@spinaGeneticsNodalMarginal2016b]| |
| 98 | 98 | |[CILP](CILP)|2|[Russler et al](papers/russler-germainMutationsAssociatedProgression2023b)[@russler-germainMutationsAssociatedProgression2023b]|| |
| 99 | 99 | |[CPNE8](CPNE8)|2|[Hubschmann et al](papers/hubschmannMutationalMechanismsShaping2021b)[@hubschmannMutationalMechanismsShaping2021b]|| |
| 100 | -|[CXCR4](CXCR4)|2, aSHM|[Krysiak et al](papers/krysiakRecurrentSomaticMutations2017b)[@krysiakRecurrentSomaticMutations2017b]|[@khodabakhshiRecurrentTargetsAberrant2012; @paneaWholeGenomeLandscape2019]| |
|
| 100 | +|[CXCR4](CXCR4)|2|[Krysiak et al](papers/krysiakRecurrentSomaticMutations2017b)[@krysiakRecurrentSomaticMutations2017b]|[@khodabakhshiRecurrentTargetsAberrant2012; @paneaWholeGenomeLandscape2019]| |
|
| 101 | 101 | |[CYP2A6](CYP2A6)|2|[Russler et al](papers/russler-germainMutationsAssociatedProgression2023b)[@russler-germainMutationsAssociatedProgression2023b]|| |
| 102 | -|[DDX3X](DDX3X)|2||[@schmitzBurkittLymphomaPathogenesis2012; @mottokIntegrativeGenomicAnalysis2019b; @schmitzGeneticsPathogenesisDiffuse2018a]| |
|
| 102 | +|[DDX3X](DDX3X)|2||[@schmitzBurkittLymphomaPathogenesis2012; @reddyGeneticFunctionalDrivers2017; @mottokIntegrativeGenomicAnalysis2019b]| |
|
| 103 | 103 | |[DHX15](DHX15)|2|[Hubschmann et al](papers/hubschmannMutationalMechanismsShaping2021b)[@hubschmannMutationalMechanismsShaping2021b]|| |
| 104 | 104 | |[DUSP2](DUSP2)|2||[@dunsCharacterizationDLBCLPMBL2021b; @lohrDiscoveryPrioritizationSomatic2012a]| |
| 105 | 105 | |[EGR1](EGR1)|2|[Krysiak et al](papers/krysiakRecurrentSomaticMutations2017b)[@krysiakRecurrentSomaticMutations2017b]|[@reichelFlowSortingExome2015a; @rossiCodingGenomeSplenic2012c]| |
| 106 | 106 | |[FZR1](FZR1)|2|[Hubschmann et al](papers/hubschmannMutationalMechanismsShaping2021b)[@hubschmannMutationalMechanismsShaping2021b]|| |
| 107 | 107 | |[GBP7](GBP7)|2|[Russler et al](papers/russler-germainMutationsAssociatedProgression2023b)[@russler-germainMutationsAssociatedProgression2023b]|| |
| 108 | 108 | |[GRM6](GRM6)|2|[Russler et al](papers/russler-germainMutationsAssociatedProgression2023b)[@russler-germainMutationsAssociatedProgression2023b]|| |
| 109 | -|[HIST1H2BM](HIST1H2BM)|2, aSHM|[Krysiak et al](papers/krysiakRecurrentSomaticMutations2017b)[@krysiakRecurrentSomaticMutations2017b]|| |
|
| 110 | -|[HIST1H3I](HIST1H3I)|2, aSHM|[Krysiak et al](papers/krysiakRecurrentSomaticMutations2017b)[@krysiakRecurrentSomaticMutations2017b]|[@paneaWholeGenomeLandscape2019]| |
|
| 111 | -|[HLA-B](HLA-B)|2||[@lohrDiscoveryPrioritizationSomatic2012a; @wienandGenomicAnalysesFlowsorted2019b]| |
|
| 112 | -|[IGLL5](IGLL5)|2|[Russler et al](papers/russler-germainMutationsAssociatedProgression2023b)[@russler-germainMutationsAssociatedProgression2023b]|[@deschGenotypingCirculatingTumor2020; @paneaWholeGenomeLandscape2019]| |
|
| 109 | +|[HIST1H2BM](HIST1H2BM)|2|[Krysiak et al](papers/krysiakRecurrentSomaticMutations2017b)[@krysiakRecurrentSomaticMutations2017b]|| |
|
| 110 | +|[HIST1H3I](HIST1H3I)|2|[Krysiak et al](papers/krysiakRecurrentSomaticMutations2017b)[@krysiakRecurrentSomaticMutations2017b]|[@paneaWholeGenomeLandscape2019]| |
|
| 111 | +|[HLA-B](HLA-B)|2||[@wienandGenomicAnalysesFlowsorted2019b; @lohrDiscoveryPrioritizationSomatic2012a]| |
|
| 112 | +|[HNRNPD](HNRNPD)|2||[@reddyGeneticFunctionalDrivers2017]| |
|
| 113 | +|[IGLL5](IGLL5)|2|[Russler et al](papers/russler-germainMutationsAssociatedProgression2023b)[@russler-germainMutationsAssociatedProgression2023b]|[@paneaWholeGenomeLandscape2019; @deschGenotypingCirculatingTumor2020; @chapuyMolecularSubtypesDiffuse2018b]| |
|
| 113 | 114 | |[JUP](JUP)|2|[Hubschmann et al](papers/hubschmannMutationalMechanismsShaping2021b)[@hubschmannMutationalMechanismsShaping2021b]|| |
| 114 | 115 | |[KIR3DL1](KIR3DL1)|2|[Russler et al](papers/russler-germainMutationsAssociatedProgression2023b)[@russler-germainMutationsAssociatedProgression2023b]|| |
| 115 | 116 | |[LAPTM5](LAPTM5)|2|[Hubschmann et al](papers/hubschmannMutationalMechanismsShaping2021b)[@hubschmannMutationalMechanismsShaping2021b]|| |
| ... | ... | @@ -117,9 +118,9 @@ link-citations: true |
| 117 | 118 | |[MAP7D1](MAP7D1)|2|[Russler et al](papers/russler-germainMutationsAssociatedProgression2023b)[@russler-germainMutationsAssociatedProgression2023b]|| |
| 118 | 119 | |[MGEA5](MGEA5)|2|[Hubschmann et al](papers/hubschmannMutationalMechanismsShaping2021b)[@hubschmannMutationalMechanismsShaping2021b]|| |
| 119 | 120 | |[MKI67](MKI67)|2|[Russler et al](papers/russler-germainMutationsAssociatedProgression2023b)[@russler-germainMutationsAssociatedProgression2023b]|[@schmitzBurkittLymphomaPathogenesis2012]| |
| 120 | -|[MYC](MYC)|2||[@johnstonCmycHypermutationBurkitt1992; @jalladesExomeSequencingIdentifies2017; @dunsCharacterizationDLBCLPMBL2021b; @pasqualucciHypermutationMultipleProtooncogenes2001a]| |
|
| 121 | +|[MYC](MYC)|2||[@jalladesExomeSequencingIdentifies2017; @dunsCharacterizationDLBCLPMBL2021b; @johnstonCmycHypermutationBurkitt1992; @pasqualucciHypermutationMultipleProtooncogenes2001a]| |
|
| 121 | 122 | |[MYCBP2](MYCBP2)|2|[Hubschmann et al](papers/hubschmannMutationalMechanismsShaping2021b)[@hubschmannMutationalMechanismsShaping2021b]|| |
| 122 | -|[MYD88](MYD88)|2||[@yanBCRTLRSignaling2012a; @ngoOncogenicallyActiveMYD882011a]| |
|
| 123 | +|[MYD88](MYD88)|2||[@ngoOncogenicallyActiveMYD882011a; @yanBCRTLRSignaling2012a]| |
|
| 123 | 124 | |[NFKBIA](NFKBIA)|2|[Russler et al](papers/russler-germainMutationsAssociatedProgression2023b)[@russler-germainMutationsAssociatedProgression2023b]|[@lakeMutationsNFKBIAEncoding2009; @wienandGenomicAnalysesFlowsorted2019b]| |
| 124 | 125 | |[OR8H2](OR8H2)|2|[Russler et al](papers/russler-germainMutationsAssociatedProgression2023b)[@russler-germainMutationsAssociatedProgression2023b]|| |
| 125 | 126 | |[P2RY8](P2RY8)|2||[@muppidiLossSignalingGa132014b; @lohrDiscoveryPrioritizationSomatic2012a]| |
| ... | ... | @@ -137,5 +138,12 @@ link-citations: true |
| 137 | 138 | |[ZC3H12A](ZC3H12A)|2||[@arthurGenomewideDiscoverySomatic2018]| |
| 138 | 139 | |[ZNF608](ZNF608)|2|[Krysiak et al](papers/krysiakRecurrentSomaticMutations2017b)[@krysiakRecurrentSomaticMutations2017b]|[@zhangGeneticHeterogeneityDiffuse2013]| |
| 139 | 140 | |
| 141 | +## Tier 3 FL genes |
|
| 142 | + |
|
| 143 | +### *0 total* |
|
| 144 | + |
|
| 145 | +|Gene|Tier| First FL evidence | Other entities | |
|
| 146 | +|:-:|:-:|:--|:-| |
|
| 147 | + |
|
| 140 | 148 | |
| 141 | 149 | # References |
MCL_genes.md
| ... | ... | @@ -7,34 +7,7 @@ link-citations: true |
| 7 | 7 | |
| 8 | 8 | ## Origins of MCL genes |
| 9 | 9 | |
| 10 | -```mermaid |
|
| 11 | ---- |
|
| 12 | -config: |
|
| 13 | - sankey: |
|
| 14 | - showValues: false |
|
| 15 | - linkColor: target |
|
| 16 | - width: 800 |
|
| 17 | - height: 1000 |
|
| 18 | - nodeAlignment: right |
|
| 19 | ---- |
|
| 20 | -sankey-beta |
|
| 21 | -Zhang 2014, MCL Tier 1, 2 |
|
| 22 | -Zhang 2014, MCL Tier 2, 26 |
|
| 23 | -Nadeu 2020, MCL Tier 1, 3 |
|
| 24 | -Nadeu 2020, MCL Tier 2, 2 |
|
| 25 | -Pararajalingam 2020, MCL Tier 1, 6 |
|
| 26 | -Pararajalingam 2020, MCL Tier 2, 1 |
|
| 27 | -Bea 2013, MCL Tier 1, 11 |
|
| 28 | -Bea 2013, MCL Tier 2, 16 |
|
| 29 | -MCL, exome, 28 |
|
| 30 | -exome, Zhang 2014, 28 |
|
| 31 | -MCL, WGS/exome, 7 |
|
| 32 | -WGS/exome, Pararajalingam 2020, 7 |
|
| 33 | -MCL, WGS, 5 |
|
| 34 | -WGS, Nadeu 2020, 5 |
|
| 35 | -MCL, WGS/exome, 27 |
|
| 36 | -WGS/exome, Bea 2013, 27 |
|
| 37 | -``` |
|
| 10 | + |
|
| 38 | 11 | |
| 39 | 12 | ## Tier 1 MCL genes |
| 40 | 13 | |
| ... | ... | @@ -42,28 +15,28 @@ WGS/exome, Bea 2013, 27 |
| 42 | 15 | |
| 43 | 16 | |Gene|Tier| First MCL evidence | Other entities | |
| 44 | 17 | |:-:|:-:|:--|:-| |
| 45 | -|[ATM](ATM)|1|[Bea et al](papers/beaLandscapeSomaticMutations2013)[@beaLandscapeSomaticMutations2013]|[@reddyGeneticFunctionalDrivers2017; @braggioGenomicAnalysisMarginal2012]| |
|
| 18 | +|[ATM](ATM)|1|[Bea et al](papers/beaLandscapeSomaticMutations2013)[@beaLandscapeSomaticMutations2013]|[@braggioGenomicAnalysisMarginal2012; @reddyGeneticFunctionalDrivers2017]| |
|
| 46 | 19 | |[BIRC3](BIRC3)|1|[Bea et al](papers/beaLandscapeSomaticMutations2013)[@beaLandscapeSomaticMutations2013]|[@dunsCharacterizationDLBCLPMBL2021b; @rossiAlterationBIRC3Multiple2011a; @arthurGenomewideDiscoverySomatic2018]| |
| 47 | -|[CARD11](CARD11)|1|[Wu et al](papers/wuGeneticHeterogeneityPrimary2016)[@wuGeneticHeterogeneityPrimary2016]|[@paneaWholeGenomeLandscape2019; @yanBCRTLRSignaling2012a; @lenzOncogenicCARD11Mutations2008; @morinFrequentMutationHistonemodifying2011]| |
|
| 48 | -|[CCND1](CCND1)|1-EE|[Bea et al](papers/beaLandscapeSomaticMutations2013)[@beaLandscapeSomaticMutations2013]|| |
|
| 20 | +|[CARD11](CARD11)|1|[Wu et al](papers/wuGeneticHeterogeneityPrimary2016)[@wuGeneticHeterogeneityPrimary2016]|[@yanBCRTLRSignaling2012a; @lenzOncogenicCARD11Mutations2008; @morinFrequentMutationHistonemodifying2011]| |
|
| 21 | +|[CCND1](CCND1)|1|[Bea et al](papers/beaLandscapeSomaticMutations2013)[@beaLandscapeSomaticMutations2013]|| |
|
| 49 | 22 | |[DAZAP1](DAZAP1)|1|[Pararajalingam et al](papers/pararajalingamCodingNoncodingDrivers2020)[@pararajalingamCodingNoncodingDrivers2020]|| |
| 50 | 23 | |[EWSR1](EWSR1)|1|[Pararajalingam et al](papers/pararajalingamCodingNoncodingDrivers2020)[@pararajalingamCodingNoncodingDrivers2020]|| |
| 51 | -|[HNRNPH1](HNRNPH1)|1-EE|[Pararajalingam et al](papers/pararajalingamCodingNoncodingDrivers2020)[@pararajalingamCodingNoncodingDrivers2020]|| |
|
| 52 | -|[KMT2D](KMT2D)|1|[Bea et al](papers/beaLandscapeSomaticMutations2013)[@beaLandscapeSomaticMutations2013]|[@morinFrequentMutationHistonemodifying2011; @grandeGenomewideDiscoverySomatic2019; @rossiCodingGenomeSplenic2012c; @deschGenotypingCirculatingTumor2020]| |
|
| 24 | +|[HNRNPH1](HNRNPH1)|1|[Pararajalingam et al](papers/pararajalingamCodingNoncodingDrivers2020)[@pararajalingamCodingNoncodingDrivers2020]|| |
|
| 25 | +|[KMT2D](KMT2D)|1|[Bea et al](papers/beaLandscapeSomaticMutations2013)[@beaLandscapeSomaticMutations2013]|[@grandeGenomewideDiscoverySomatic2019; @rossiCodingGenomeSplenic2012c; @deschGenotypingCirculatingTumor2020; @morinFrequentMutationHistonemodifying2011]| |
|
| 53 | 26 | |[MEF2B](MEF2B)|1|[Bea et al](papers/beaLandscapeSomaticMutations2013)[@beaLandscapeSomaticMutations2013]|[@morinFrequentMutationHistonemodifying2011]| |
| 54 | -|[NFKBIE](NFKBIE)|1|[Pararajalingam et al](papers/pararajalingamCodingNoncodingDrivers2020)[@pararajalingamCodingNoncodingDrivers2020]|[@morinGeneticLandscapesRelapsed2016; @mansouriFrequentNFKBIEDeletions2016]| |
|
| 55 | -|[NOTCH1](NOTCH1)|1|[Bea et al](papers/beaLandscapeSomaticMutations2013)[@beaLandscapeSomaticMutations2013]|[@pasqualucciAnalysisCodingGenome2011; @loveGeneticLandscapeMutations2012; @rossiCodingGenomeSplenic2012c]| |
|
| 56 | -|[NOTCH2](NOTCH2)|1|[Bea et al](papers/beaLandscapeSomaticMutations2013)[@beaLandscapeSomaticMutations2013]|[@rossiCodingGenomeSplenic2012c; @troenNOTCH2MutationsMarginal2008; @paneaWholeGenomeLandscape2019]| |
|
| 57 | -|[NSD2](NSD2)|1|[Bea et al](papers/beaLandscapeSomaticMutations2013)[@beaLandscapeSomaticMutations2013]|| |
|
| 27 | +|[NFKBIE](NFKBIE)|1|[Pararajalingam et al](papers/pararajalingamCodingNoncodingDrivers2020)[@pararajalingamCodingNoncodingDrivers2020]|[@mansouriFrequentNFKBIEDeletions2016; @morinGeneticLandscapesRelapsed2016]| |
|
| 28 | +|[NOTCH1](NOTCH1)|1|[Bea et al](papers/beaLandscapeSomaticMutations2013)[@beaLandscapeSomaticMutations2013]|[@loveGeneticLandscapeMutations2012; @pasqualucciAnalysisCodingGenome2011; @rossiCodingGenomeSplenic2012c]| |
|
| 29 | +|[NOTCH2](NOTCH2)|1|[Bea et al](papers/beaLandscapeSomaticMutations2013)[@beaLandscapeSomaticMutations2013]|[@zhangGeneticHeterogeneityDiffuse2013; @rossiCodingGenomeSplenic2012c]| |
|
| 30 | +|[NSD2](NSD2)|1|[Bea et al](papers/beaLandscapeSomaticMutations2013)[@beaLandscapeSomaticMutations2013]|[@zhangGeneticHeterogeneityDiffuse2013]| |
|
| 58 | 31 | |[POT1](POT1)|1|[Zhang et al](papers/zhangGenomicLandscapeMantle2014)[@zhangGenomicLandscapeMantle2014]|| |
| 59 | 32 | |[RB1](RB1)|1|[Zhang et al](papers/zhangGenomicLandscapeMantle2014)[@zhangGenomicLandscapeMantle2014]|[@morinMutationalStructuralAnalysis2013]| |
| 60 | 33 | |[S1PR1](S1PR1)|1|[Pararajalingam et al](papers/pararajalingamCodingNoncodingDrivers2020)[@pararajalingamCodingNoncodingDrivers2020]|[@lohrDiscoveryPrioritizationSomatic2012a]| |
| 61 | -|[SMARCA4](SMARCA4)|1|[Nadeu et al](papers/nadeuGenomicEpigenomicInsights2020b)[@nadeuGenomicEpigenomicInsights2020b]|[@krysiakRecurrentSomaticMutations2017b; @richterRecurrentMutationID32012a; @lohrDiscoveryPrioritizationSomatic2012a]| |
|
| 34 | +|[SMARCA4](SMARCA4)|1|[Nadeu et al](papers/nadeuGenomicEpigenomicInsights2020b)[@nadeuGenomicEpigenomicInsights2020b]|[@richterRecurrentMutationID32012a; @lohrDiscoveryPrioritizationSomatic2012a; @krysiakRecurrentSomaticMutations2017b]| |
|
| 62 | 35 | |[SP140](SP140)|1|[Bea et al](papers/beaLandscapeSomaticMutations2013)[@beaLandscapeSomaticMutations2013]|| |
| 63 | 36 | |[SYNE1](SYNE1)|1|[Nadeu et al](papers/nadeuGenomicEpigenomicInsights2020b)[@nadeuGenomicEpigenomicInsights2020b]|| |
| 64 | 37 | |[TERT](TERT)|1|[Nadeu et al](papers/nadeuGenomicEpigenomicInsights2020b)[@nadeuGenomicEpigenomicInsights2020b]|| |
| 65 | 38 | |[TLR2](TLR2)|1|[Bea et al](papers/beaLandscapeSomaticMutations2013)[@beaLandscapeSomaticMutations2013]|[@chapuyMolecularSubtypesDiffuse2018b]| |
| 66 | -|[TP53](TP53)|1-EE|[Bea et al](papers/beaLandscapeSomaticMutations2013)[@beaLandscapeSomaticMutations2013]|[@tiacciPervasiveMutationsJAKSTAT2018b; @lohrDiscoveryPrioritizationSomatic2012a; @rossiCodingGenomeSplenic2012c; @morinFrequentMutationHistonemodifying2011; @wildaInactivationARFMDM2p53Pathway2004]| |
|
| 39 | +|[TP53](TP53)|1|[Bea et al](papers/beaLandscapeSomaticMutations2013)[@beaLandscapeSomaticMutations2013]|[@tiacciPervasiveMutationsJAKSTAT2018b; @morinFrequentMutationHistonemodifying2011; @wildaInactivationARFMDM2p53Pathway2004; @rossiCodingGenomeSplenic2012c; @lohrDiscoveryPrioritizationSomatic2012a]| |
|
| 67 | 40 | |[UBR5](UBR5)|1|[Pararajalingam et al](papers/pararajalingamCodingNoncodingDrivers2020)[@pararajalingamCodingNoncodingDrivers2020]|[@zhangGeneticHeterogeneityDiffuse2013]| |
| 68 | 41 | |
| 69 | 42 | ## Tier 2 MCL genes |
| ... | ... | @@ -72,14 +45,14 @@ WGS/exome, Bea 2013, 27 |
| 72 | 45 | |
| 73 | 46 | |Gene|Tier| First MCL evidence | Other entities | |
| 74 | 47 | |:-:|:-:|:--|:-| |
| 75 | -|[ABCA3](ABCA3)|2|[Bea et al](papers/beaLandscapeSomaticMutations2013)[@beaLandscapeSomaticMutations2013]|| |
|
| 48 | +|[ABCA3](ABCA3)|2|[Bea et al](papers/beaLandscapeSomaticMutations2013)[@beaLandscapeSomaticMutations2013]|[@zhangGeneticHeterogeneityDiffuse2013]| |
|
| 76 | 49 | |[ABCC9](ABCC9)|2|[Bea et al](papers/beaLandscapeSomaticMutations2013)[@beaLandscapeSomaticMutations2013]|| |
| 77 | -|[ANK2](ANK2)|2|[Zhang et al](papers/zhangGenomicLandscapeMantle2014)[@zhangGenomicLandscapeMantle2014]|| |
|
| 50 | +|[ANK2](ANK2)|2|[Zhang et al](papers/zhangGenomicLandscapeMantle2014)[@zhangGenomicLandscapeMantle2014]|[@zhangGeneticHeterogeneityDiffuse2013]| |
|
| 78 | 51 | |[ARID1B](ARID1B)|2||[@reddyGeneticFunctionalDrivers2017]| |
| 79 | 52 | |[ATP11C](ATP11C)|2|[Zhang et al](papers/zhangGenomicLandscapeMantle2014)[@zhangGenomicLandscapeMantle2014]|| |
| 80 | -|[B2M](B2M)|2|[Pararajalingam et al](papers/pararajalingamCodingNoncodingDrivers2020)[@pararajalingamCodingNoncodingDrivers2020]|[@reichelFlowSortingExome2015a; @morinFrequentMutationHistonemodifying2011]| |
|
| 53 | +|[B2M](B2M)|2|[Pararajalingam et al](papers/pararajalingamCodingNoncodingDrivers2020)[@pararajalingamCodingNoncodingDrivers2020]|[@morinFrequentMutationHistonemodifying2011; @reichelFlowSortingExome2015a]| |
|
| 81 | 54 | |[BCOR](BCOR)|2|[Nadeu et al](papers/nadeuGenomicEpigenomicInsights2020b)[@nadeuGenomicEpigenomicInsights2020b]|[@jalladesExomeSequencingIdentifies2017]| |
| 82 | -|[CDH8](CDH8)|2|[Zhang et al](papers/zhangGenomicLandscapeMantle2014)[@zhangGenomicLandscapeMantle2014]|| |
|
| 55 | +|[CDH8](CDH8)|2|[Zhang et al](papers/zhangGenomicLandscapeMantle2014)[@zhangGenomicLandscapeMantle2014]|[@reddyGeneticFunctionalDrivers2017]| |
|
| 83 | 56 | |[CHMP4C](CHMP4C)|2|[Bea et al](papers/beaLandscapeSomaticMutations2013)[@beaLandscapeSomaticMutations2013]|| |
| 84 | 57 | |[COL11A1](COL11A1)|2|[Zhang et al](papers/zhangGenomicLandscapeMantle2014)[@zhangGenomicLandscapeMantle2014]|| |
| 85 | 58 | |[COL16A1](COL16A1)|2|[Zhang et al](papers/zhangGenomicLandscapeMantle2014)[@zhangGenomicLandscapeMantle2014]|| |
| ... | ... | @@ -92,12 +65,12 @@ WGS/exome, Bea 2013, 27 |
| 92 | 65 | |[DNAJC6](DNAJC6)|2|[Bea et al](papers/beaLandscapeSomaticMutations2013)[@beaLandscapeSomaticMutations2013]|| |
| 93 | 66 | |[EIF2AK4](EIF2AK4)|2|[Zhang et al](papers/zhangGenomicLandscapeMantle2014)[@zhangGenomicLandscapeMantle2014]|| |
| 94 | 67 | |[ESX1](ESX1)|2|[Zhang et al](papers/zhangGenomicLandscapeMantle2014)[@zhangGenomicLandscapeMantle2014]|| |
| 95 | -|[FAT4](FAT4)|2|[Zhang et al](papers/zhangGenomicLandscapeMantle2014)[@zhangGenomicLandscapeMantle2014]|[@parryWholeExomeSequencing2013; @morinMutationalStructuralAnalysis2013]| |
|
| 68 | +|[FAT4](FAT4)|2|[Zhang et al](papers/zhangGenomicLandscapeMantle2014)[@zhangGenomicLandscapeMantle2014]|[@morinMutationalStructuralAnalysis2013; @parryWholeExomeSequencing2013]| |
|
| 96 | 69 | |[GRIN2A](GRIN2A)|2|[Zhang et al](papers/zhangGenomicLandscapeMantle2014)[@zhangGenomicLandscapeMantle2014]|| |
| 97 | 70 | |[HEPH](HEPH)|2|[Zhang et al](papers/zhangGenomicLandscapeMantle2014)[@zhangGenomicLandscapeMantle2014]|| |
| 98 | 71 | |[KCNC2](KCNC2)|2|[Bea et al](papers/beaLandscapeSomaticMutations2013)[@beaLandscapeSomaticMutations2013]|| |
| 99 | 72 | |[KIAA1671](KIAA1671)|2|[Bea et al](papers/beaLandscapeSomaticMutations2013)[@beaLandscapeSomaticMutations2013]|| |
| 100 | -|[KMT2C](KMT2C)|2|[Zhang et al](papers/zhangGenomicLandscapeMantle2014)[@zhangGenomicLandscapeMantle2014]|[@zhouSporadicEndemicBurkitt2019; @zhangGeneticHeterogeneityDiffuse2013; @sarkozyMutationalLandscapeGray2021a]| |
|
| 73 | +|[KMT2C](KMT2C)|2|[Zhang et al](papers/zhangGenomicLandscapeMantle2014)[@zhangGenomicLandscapeMantle2014]|[@sarkozyMutationalLandscapeGray2021a; @zhangGeneticHeterogeneityDiffuse2013; @zhouSporadicEndemicBurkitt2019]| |
|
| 101 | 74 | |[LUZP4](LUZP4)|2|[Bea et al](papers/beaLandscapeSomaticMutations2013)[@beaLandscapeSomaticMutations2013]|| |
| 102 | 75 | |[MRGPRF](MRGPRF)|2|[Zhang et al](papers/zhangGenomicLandscapeMantle2014)[@zhangGenomicLandscapeMantle2014]|| |
| 103 | 76 | |[NIN](NIN)|2|[Zhang et al](papers/zhangGenomicLandscapeMantle2014)[@zhangGenomicLandscapeMantle2014]|| |
| ... | ... | @@ -119,5 +92,12 @@ WGS/exome, Bea 2013, 27 |
| 119 | 92 | |[ZNF117](ZNF117)|2|[Zhang et al](papers/zhangGenomicLandscapeMantle2014)[@zhangGenomicLandscapeMantle2014]|| |
| 120 | 93 | |[ZNF296](ZNF296)|2|[Zhang et al](papers/zhangGenomicLandscapeMantle2014)[@zhangGenomicLandscapeMantle2014]|| |
| 121 | 94 | |
| 95 | +## Tier 3 MCL genes |
|
| 96 | + |
|
| 97 | +### *0 total* |
|
| 98 | + |
|
| 99 | +|Gene|Tier| First MCL evidence | Other entities | |
|
| 100 | +|:-:|:-:|:--|:-| |
|
| 101 | + |
|
| 122 | 102 | |
| 123 | 103 | # References |
MZL_genes.md
| ... | ... | @@ -15,47 +15,47 @@ link-citations: true |
| 15 | 15 | |
| 16 | 16 | |Gene|Tier| First MZL evidence | Other entities | |
| 17 | 17 | |:-:|:-:|:--|:-| |
| 18 | -|[ACTB](ACTB)|1||[@lohrDiscoveryPrioritizationSomatic2012a; @wienandGenomicAnalysesFlowsorted2019b]| |
|
| 19 | -|[ARID1A](ARID1A)|1|[Rossi et al](papers/rossiCodingGenomeSplenic2012c)[@rossiCodingGenomeSplenic2012c]|[@wienandGenomicAnalysesFlowsorted2019b; @loveGeneticLandscapeMutations2012; @krysiakRecurrentSomaticMutations2017b; @zhangGeneticHeterogeneityDiffuse2013]| |
|
| 20 | -|[ATM](ATM)|1|[Braggio et al](papers/braggioGenomicAnalysisMarginal2012)[@braggioGenomicAnalysisMarginal2012]|[@beaLandscapeSomaticMutations2013; @reddyGeneticFunctionalDrivers2017]| |
|
| 21 | -|[BCL10](BCL10)|1|[Spina et al](papers/spinaGeneticsNodalMarginal2016b)[@spinaGeneticsNodalMarginal2016b]|[@morinFrequentMutationHistonemodifying2011; @russler-germainMutationsAssociatedProgression2023b]| |
|
| 22 | -|[BCL7A](BCL7A)|1||[@krysiakRecurrentSomaticMutations2017b; @grandeGenomewideDiscoverySomatic2019; @reichelFlowSortingExome2015a; @arthurGenomewideDiscoverySomatic2018]| |
|
| 23 | -|[BIRC3](BIRC3)|1|[Rossi et al](papers/rossiAlterationBIRC3Multiple2011a)[@rossiAlterationBIRC3Multiple2011a]|[@arthurGenomewideDiscoverySomatic2018; @beaLandscapeSomaticMutations2013; @dunsCharacterizationDLBCLPMBL2021b]| |
|
| 18 | +|[ACTB](ACTB)|1||[@wienandGenomicAnalysesFlowsorted2019b; @lohrDiscoveryPrioritizationSomatic2012a]| |
|
| 19 | +|[ARID1A](ARID1A)|1|[Rossi et al](papers/rossiCodingGenomeSplenic2012c)[@rossiCodingGenomeSplenic2012c]|[@krysiakRecurrentSomaticMutations2017b; @loveGeneticLandscapeMutations2012; @zhangGeneticHeterogeneityDiffuse2013; @wienandGenomicAnalysesFlowsorted2019b]| |
|
| 20 | +|[ATM](ATM)|1|[Braggio et al](papers/braggioGenomicAnalysisMarginal2012)[@braggioGenomicAnalysisMarginal2012]|[@reddyGeneticFunctionalDrivers2017; @beaLandscapeSomaticMutations2013]| |
|
| 21 | +|[BCL10](BCL10)|1|[Spina et al](papers/spinaGeneticsNodalMarginal2016b)[@spinaGeneticsNodalMarginal2016b]|[@russler-germainMutationsAssociatedProgression2023b; @morinFrequentMutationHistonemodifying2011]| |
|
| 22 | +|[BCL7A](BCL7A)|1||[@krysiakRecurrentSomaticMutations2017b; @zhangGeneticHeterogeneityDiffuse2013; @grandeGenomewideDiscoverySomatic2019; @reichelFlowSortingExome2015a]| |
|
| 23 | +|[BIRC3](BIRC3)|1|[Rossi et al](papers/rossiAlterationBIRC3Multiple2011a)[@rossiAlterationBIRC3Multiple2011a]|[@dunsCharacterizationDLBCLPMBL2021b; @beaLandscapeSomaticMutations2013; @arthurGenomewideDiscoverySomatic2018]| |
|
| 24 | 24 | |[BRAF](BRAF)|1||[@loveGeneticLandscapeMutations2012; @tiacciBRAFMutationsHairycell2011a]| |
| 25 | -|[BTG1](BTG1)|1||[@burkhardtClinicalRelevanceMolecular2022b; @morinFrequentMutationHistonemodifying2011; @sarkozyMutationalLandscapeGray2021a]| |
|
| 26 | -|[CARD11](CARD11)|1|[Yan et al](papers/yanBCRTLRSignaling2012a)[@yanBCRTLRSignaling2012a]|[@paneaWholeGenomeLandscape2019; @morinFrequentMutationHistonemodifying2011; @lenzOncogenicCARD11Mutations2008; @wuGeneticHeterogeneityPrimary2016]| |
|
| 27 | -|[CCND3](CCND3)|1|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)[@jalladesExomeSequencingIdentifies2017]|[@deschGenotypingCirculatingTumor2020; @richterRecurrentMutationID32012a; @morinFrequentMutationHistonemodifying2011]| |
|
| 28 | -|[CXCR4](CXCR4)|1||[@paneaWholeGenomeLandscape2019; @khodabakhshiRecurrentTargetsAberrant2012; @krysiakRecurrentSomaticMutations2017b]| |
|
| 29 | -|[DTX1](DTX1)|1|[Rossi et al](papers/rossiCodingGenomeSplenic2012c)[@rossiCodingGenomeSplenic2012c]|[@gomezUltraDeepSequencingReveals2023; @schmitzGeneticsPathogenesisDiffuse2018a; @loveGeneticLandscapeMutations2012]| |
|
| 30 | -|[EP300](EP300)|1|[Rossi et al](papers/rossiCodingGenomeSplenic2012c)[@rossiCodingGenomeSplenic2012c]|[@pasqualucciInactivatingMutationsAcetyltransferase2011a; @paneaWholeGenomeLandscape2019]| |
|
| 31 | -|[EZH2](EZH2)|1||[@mottokIntegrativeGenomicAnalysis2019b; @morinSomaticMutationsAltering2010a; @loveGeneticLandscapeMutations2012]| |
|
| 25 | +|[BTG1](BTG1)|1||[@morinFrequentMutationHistonemodifying2011; @burkhardtClinicalRelevanceMolecular2022b; @sarkozyMutationalLandscapeGray2021a]| |
|
| 26 | +|[CARD11](CARD11)|1|[Yan et al](papers/yanBCRTLRSignaling2012a)[@yanBCRTLRSignaling2012a]|[@wuGeneticHeterogeneityPrimary2016; @morinFrequentMutationHistonemodifying2011; @lenzOncogenicCARD11Mutations2008]| |
|
| 27 | +|[CCND3](CCND3)|1|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)[@jalladesExomeSequencingIdentifies2017]|[@morinFrequentMutationHistonemodifying2011; @deschGenotypingCirculatingTumor2020; @richterRecurrentMutationID32012a]| |
|
| 28 | +|[CXCR4](CXCR4)|1||[@khodabakhshiRecurrentTargetsAberrant2012; @paneaWholeGenomeLandscape2019; @krysiakRecurrentSomaticMutations2017b]| |
|
| 29 | +|[DTX1](DTX1)|1|[Rossi et al](papers/rossiCodingGenomeSplenic2012c)[@rossiCodingGenomeSplenic2012c]|[@gomezUltraDeepSequencingReveals2023; @zhangGeneticHeterogeneityDiffuse2013; @loveGeneticLandscapeMutations2012]| |
|
| 30 | +|[EP300](EP300)|1|[Rossi et al](papers/rossiCodingGenomeSplenic2012c)[@rossiCodingGenomeSplenic2012c]|[@pasqualucciInactivatingMutationsAcetyltransferase2011a]| |
|
| 31 | +|[EZH2](EZH2)|1||[@loveGeneticLandscapeMutations2012; @morinSomaticMutationsAltering2010a; @mottokIntegrativeGenomicAnalysis2019b]| |
|
| 32 | 32 | |[FAS](FAS)|1|[Spina et al](papers/spinaGeneticsNodalMarginal2016b)[@spinaGeneticsNodalMarginal2016b]|[@schollMutationsRegionFAS2007]| |
| 33 | 33 | |[FAT1](FAT1)|1|[Spina et al](papers/spinaGeneticsNodalMarginal2016b)[@spinaGeneticsNodalMarginal2016b]|| |
| 34 | -|[FOXO1](FOXO1)|1||[@morinFrequentMutationHistonemodifying2011; @schmitzBurkittLymphomaPathogenesis2012; @dunsCharacterizationDLBCLPMBL2021b]| |
|
| 34 | +|[FOXO1](FOXO1)|1||[@schmitzBurkittLymphomaPathogenesis2012; @morinFrequentMutationHistonemodifying2011; @dunsCharacterizationDLBCLPMBL2021b]| |
|
| 35 | 35 | |[H1-4](H1-4)|1||| |
| 36 | 36 | |[H1-5](H1-5)|1||| |
| 37 | 37 | |[ID3](ID3)|1|[Spina et al](papers/spinaGeneticsNodalMarginal2016b)[@spinaGeneticsNodalMarginal2016b]|[@schmitzBurkittLymphomaPathogenesis2012; @richterRecurrentMutationID32012a]| |
| 38 | -|[KLF2](KLF2)|1|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)[@jalladesExomeSequencingIdentifies2017]|[@deschGenotypingCirculatingTumor2020; @pasqualucciAnalysisCodingGenome2011]| |
|
| 39 | -|[KLHL6](KLHL6)|1|[Ganapathi et al](papers/ganapathiGeneticLandscapeDural2016)[@ganapathiGeneticLandscapeDural2016]|[@morinFrequentMutationHistonemodifying2011; @paneaWholeGenomeLandscape2019]| |
|
| 40 | -|[KMT2D](KMT2D)|1|[Rossi et al](papers/rossiCodingGenomeSplenic2012c)[@rossiCodingGenomeSplenic2012c]|[@morinFrequentMutationHistonemodifying2011; @beaLandscapeSomaticMutations2013; @grandeGenomewideDiscoverySomatic2019; @deschGenotypingCirculatingTumor2020]| |
|
| 38 | +|[KLF2](KLF2)|1|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)[@jalladesExomeSequencingIdentifies2017]|[@pasqualucciAnalysisCodingGenome2011; @deschGenotypingCirculatingTumor2020]| |
|
| 39 | +|[KLHL6](KLHL6)|1|[Ganapathi et al](papers/ganapathiGeneticLandscapeDural2016)[@ganapathiGeneticLandscapeDural2016]|[@morinFrequentMutationHistonemodifying2011]| |
|
| 40 | +|[KMT2D](KMT2D)|1|[Rossi et al](papers/rossiCodingGenomeSplenic2012c)[@rossiCodingGenomeSplenic2012c]|[@beaLandscapeSomaticMutations2013; @grandeGenomewideDiscoverySomatic2019; @morinFrequentMutationHistonemodifying2011; @deschGenotypingCirculatingTumor2020]| |
|
| 41 | 41 | |[MAP3K14](MAP3K14)|1|[Rossi et al](papers/rossiAlterationBIRC3Multiple2011a)[@rossiAlterationBIRC3Multiple2011a]|[@ottoGeneticLesionsTRAF32012a]| |
| 42 | 42 | |[MPEG1](MPEG1)|1||[@morinMutationalStructuralAnalysis2013]| |
| 43 | 43 | |[MYD88](MYD88)|1|[Yan et al](papers/yanBCRTLRSignaling2012a)[@yanBCRTLRSignaling2012a]|[@ngoOncogenicallyActiveMYD882011a]| |
| 44 | 44 | |[NCOR2](NCOR2)|1|[Spina et al](papers/spinaGeneticsNodalMarginal2016b)[@spinaGeneticsNodalMarginal2016b]|[@schmitzBurkittLymphomaPathogenesis2012; @sarkozyMutationalLandscapeGray2021a]| |
| 45 | 45 | |[NOL9](NOL9)|1|[Spina et al](papers/spinaGeneticsNodalMarginal2016b)[@spinaGeneticsNodalMarginal2016b]|[@schmitzGeneticsPathogenesisDiffuse2018a]| |
| 46 | -|[NOTCH1](NOTCH1)|1|[Rossi et al](papers/rossiCodingGenomeSplenic2012c)[@rossiCodingGenomeSplenic2012c]|[@loveGeneticLandscapeMutations2012; @pasqualucciAnalysisCodingGenome2011; @beaLandscapeSomaticMutations2013]| |
|
| 47 | -|[NOTCH2](NOTCH2)|1|[Rossi et al](papers/rossiCodingGenomeSplenic2012c)[@rossiCodingGenomeSplenic2012c]|[@troenNOTCH2MutationsMarginal2008; @paneaWholeGenomeLandscape2019; @beaLandscapeSomaticMutations2013]| |
|
| 46 | +|[NOTCH1](NOTCH1)|1|[Rossi et al](papers/rossiCodingGenomeSplenic2012c)[@rossiCodingGenomeSplenic2012c]|[@beaLandscapeSomaticMutations2013; @pasqualucciAnalysisCodingGenome2011; @loveGeneticLandscapeMutations2012]| |
|
| 47 | +|[NOTCH2](NOTCH2)|1|[Rossi et al](papers/rossiCodingGenomeSplenic2012c)[@rossiCodingGenomeSplenic2012c]|[@beaLandscapeSomaticMutations2013; @zhangGeneticHeterogeneityDiffuse2013]| |
|
| 48 | 48 | |[PCLO](PCLO)|1||[@lohrDiscoveryPrioritizationSomatic2012a]| |
| 49 | -|[POU2AF1](POU2AF1)|1||[@krysiakRecurrentSomaticMutations2017b]| |
|
| 49 | +|[POU2AF1](POU2AF1)|1||[@chapuyMolecularSubtypesDiffuse2018b; @krysiakRecurrentSomaticMutations2017b]| |
|
| 50 | 50 | |[PTPRD](PTPRD)|1|[Spina et al](papers/spinaGeneticsNodalMarginal2016b)[@spinaGeneticsNodalMarginal2016b]|| |
| 51 | -|[SIN3A](SIN3A)|1|[Rossi et al](papers/rossiCodingGenomeSplenic2012c)[@rossiCodingGenomeSplenic2012c]|[@grandeGenomewideDiscoverySomatic2019]| |
|
| 51 | +|[SIN3A](SIN3A)|1|[Rossi et al](papers/rossiCodingGenomeSplenic2012c)[@rossiCodingGenomeSplenic2012c]|[@chapuyMolecularSubtypesDiffuse2018b; @grandeGenomewideDiscoverySomatic2019]| |
|
| 52 | 52 | |[SOCS1](SOCS1)|1||[@wenigerMutationsTumorSuppressor2006a; @morinFrequentMutationHistonemodifying2011]| |
| 53 | -|[SPEN](SPEN)|1|[Rossi et al](papers/rossiCodingGenomeSplenic2012c)[@rossiCodingGenomeSplenic2012c]|[@sarkozyMutationalLandscapeGray2021a]| |
|
| 53 | +|[SPEN](SPEN)|1|[Rossi et al](papers/rossiCodingGenomeSplenic2012c)[@rossiCodingGenomeSplenic2012c]|[@sarkozyMutationalLandscapeGray2021a; @albuquerqueEnhancingKnowledgeDiscovery2017a]| |
|
| 54 | 54 | |[STAT6](STAT6)|1||[@ritzRecurrentMutationsSTAT62009a; @yildizActivatingSTAT6Mutations2015c]| |
| 55 | 55 | |[TBL1XR1](TBL1XR1)|1|[Rossi et al](papers/rossiCodingGenomeSplenic2012c)[@rossiCodingGenomeSplenic2012c]|[@lohrDiscoveryPrioritizationSomatic2012a]| |
| 56 | -|[TNFAIP3](TNFAIP3)|1|[Rossi et al](papers/rossiAlterationBIRC3Multiple2011a)[@rossiAlterationBIRC3Multiple2011a]|[@compagnoMutationsMultipleGenes2009a; @schmitzTNFAIP3A20Tumor2009a]| |
|
| 57 | -|[TNFRSF14](TNFRSF14)|1|[Spina et al](papers/spinaGeneticsNodalMarginal2016b)[@spinaGeneticsNodalMarginal2016b]|[@cheungAcquiredTNFRSF14Mutations2010a; @morinFrequentMutationHistonemodifying2011]| |
|
| 58 | -|[TP53](TP53)|1|[Rossi et al](papers/rossiCodingGenomeSplenic2012c)[@rossiCodingGenomeSplenic2012c]|[@morinFrequentMutationHistonemodifying2011; @wildaInactivationARFMDM2p53Pathway2004; @beaLandscapeSomaticMutations2013; @tiacciPervasiveMutationsJAKSTAT2018b; @lohrDiscoveryPrioritizationSomatic2012a]| |
|
| 56 | +|[TNFAIP3](TNFAIP3)|1|[Rossi et al](papers/rossiAlterationBIRC3Multiple2011a)[@rossiAlterationBIRC3Multiple2011a]|[@schmitzTNFAIP3A20Tumor2009a; @compagnoMutationsMultipleGenes2009a]| |
|
| 57 | +|[TNFRSF14](TNFRSF14)|1|[Spina et al](papers/spinaGeneticsNodalMarginal2016b)[@spinaGeneticsNodalMarginal2016b]|[@morinFrequentMutationHistonemodifying2011; @cheungAcquiredTNFRSF14Mutations2010a]| |
|
| 58 | +|[TP53](TP53)|1|[Rossi et al](papers/rossiCodingGenomeSplenic2012c)[@rossiCodingGenomeSplenic2012c]|[@morinFrequentMutationHistonemodifying2011; @tiacciPervasiveMutationsJAKSTAT2018b; @lohrDiscoveryPrioritizationSomatic2012a; @wildaInactivationARFMDM2p53Pathway2004; @beaLandscapeSomaticMutations2013]| |
|
| 59 | 59 | |[TRAF3](TRAF3)|1|[Rossi et al](papers/rossiAlterationBIRC3Multiple2011a)[@rossiAlterationBIRC3Multiple2011a]|[@pasqualucciAnalysisCodingGenome2011; @ottoGeneticLesionsTRAF32012a]| |
| 60 | 60 | |
| 61 | 61 | ## Tier 2 MZL genes |
| ... | ... | @@ -79,7 +79,7 @@ link-citations: true |
| 79 | 79 | |[CD79A](CD79A)|2|[Rossi et al](papers/rossiCodingGenomeSplenic2012c)[@rossiCodingGenomeSplenic2012c]|[@burkhardtClinicalRelevanceMolecular2022b]| |
| 80 | 80 | |[CD9B](CD9B)|2|[Vandenbrand et al](papers/vandenbrandRecurrentMutationsGenes2017)[@vandenbrandRecurrentMutationsGenes2017]|| |
| 81 | 81 | |[CDC42BPB](CDC42BPB)|2|[Spina et al](papers/spinaGeneticsNodalMarginal2016b)[@spinaGeneticsNodalMarginal2016b]|[@hubschmannMutationalMechanismsShaping2021b]| |
| 82 | -|[CDKN2A](CDKN2A)|2|[Spina et al](papers/spinaGeneticsNodalMarginal2016b)[@spinaGeneticsNodalMarginal2016b]|[@grandeGenomewideDiscoverySomatic2019; @morinMutationalStructuralAnalysis2013]| |
|
| 82 | +|[CDKN2A](CDKN2A)|2|[Spina et al](papers/spinaGeneticsNodalMarginal2016b)[@spinaGeneticsNodalMarginal2016b]|[@morinMutationalStructuralAnalysis2013; @grandeGenomewideDiscoverySomatic2019]| |
|
| 83 | 83 | |[CLGN](CLGN)|2|[Spina et al](papers/spinaGeneticsNodalMarginal2016b)[@spinaGeneticsNodalMarginal2016b]|| |
| 84 | 84 | |[CNBP](CNBP)|2|[Spina et al](papers/spinaGeneticsNodalMarginal2016b)[@spinaGeneticsNodalMarginal2016b]|| |
| 85 | 85 | |[CNKSR2](CNKSR2)|2|[Spina et al](papers/spinaGeneticsNodalMarginal2016b)[@spinaGeneticsNodalMarginal2016b]|| |
| ... | ... | @@ -88,31 +88,31 @@ link-citations: true |
| 88 | 88 | |[DNAH7](DNAH7)|2|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)[@jalladesExomeSequencingIdentifies2017]|| |
| 89 | 89 | |[DNAI1](DNAI1)|2|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)[@jalladesExomeSequencingIdentifies2017]|| |
| 90 | 90 | |[DOCK6](DOCK6)|2|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)[@jalladesExomeSequencingIdentifies2017]|| |
| 91 | -|[DSP](DSP)|2||| |
|
| 91 | +|[DSP](DSP)|2||[@zhangGeneticHeterogeneityDiffuse2013]| |
|
| 92 | 92 | |[DTNB](DTNB)|2||| |
| 93 | 93 | |[DTX3L](DTX3L)|2|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)[@jalladesExomeSequencingIdentifies2017]|| |
| 94 | -|[EGR1](EGR1)|2|[Rossi et al](papers/rossiCodingGenomeSplenic2012c)[@rossiCodingGenomeSplenic2012c]|[@krysiakRecurrentSomaticMutations2017b; @reichelFlowSortingExome2015a]| |
|
| 94 | +|[EGR1](EGR1)|2|[Rossi et al](papers/rossiCodingGenomeSplenic2012c)[@rossiCodingGenomeSplenic2012c]|[@reichelFlowSortingExome2015a; @krysiakRecurrentSomaticMutations2017b]| |
|
| 95 | 95 | |[EGR2](EGR2)|2|[Rossi et al](papers/rossiCodingGenomeSplenic2012c)[@rossiCodingGenomeSplenic2012c]|| |
| 96 | 96 | |[EZH1](EZH1)|2|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)[@jalladesExomeSequencingIdentifies2017]|| |
| 97 | 97 | |[FAT4](FAT4)|2|[Parry et al](papers/parryWholeExomeSequencing2013)[@parryWholeExomeSequencing2013]|[@morinMutationalStructuralAnalysis2013; @zhangGenomicLandscapeMantle2014]| |
| 98 | 98 | |[FBXO11](FBXO11)|2|[Parry et al](papers/parryWholeExomeSequencing2013)[@parryWholeExomeSequencing2013]|[@richterRecurrentMutationID32012a; @hubschmannMutationalMechanismsShaping2021b]| |
| 99 | 99 | |[GPR98](GPR98)|2|[Spina et al](papers/spinaGeneticsNodalMarginal2016b)[@spinaGeneticsNodalMarginal2016b]|| |
| 100 | 100 | |[GPS2](GPS2)|2|[Rossi et al](papers/rossiCodingGenomeSplenic2012c)[@rossiCodingGenomeSplenic2012c]|| |
| 101 | -|[HIST1H1D](HIST1H1D)|2|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)[@jalladesExomeSequencingIdentifies2017]|[@morinMutationalStructuralAnalysis2013; @krysiakRecurrentSomaticMutations2017b]| |
|
| 101 | +|[HIST1H1D](HIST1H1D)|2|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)[@jalladesExomeSequencingIdentifies2017]|[@krysiakRecurrentSomaticMutations2017b; @morinMutationalStructuralAnalysis2013]| |
|
| 102 | 102 | |[HIST1H2AD](HIST1H2AD)|2|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)[@jalladesExomeSequencingIdentifies2017]|| |
| 103 | -|[HIST1H2AG](HIST1H2AG)|2|[Rossi et al](papers/rossiCodingGenomeSplenic2012c)[@rossiCodingGenomeSplenic2012c]|[@paneaWholeGenomeLandscape2019; @morinMutationalStructuralAnalysis2013; @krysiakRecurrentSomaticMutations2017b]| |
|
| 104 | -|[HIST1H2BK](HIST1H2BK)|2|[Rossi et al](papers/rossiCodingGenomeSplenic2012c)[@rossiCodingGenomeSplenic2012c]|[@paneaWholeGenomeLandscape2019]| |
|
| 103 | +|[HIST1H2AG](HIST1H2AG)|2|[Rossi et al](papers/rossiCodingGenomeSplenic2012c)[@rossiCodingGenomeSplenic2012c]|[@krysiakRecurrentSomaticMutations2017b; @paneaWholeGenomeLandscape2019; @morinMutationalStructuralAnalysis2013]| |
|
| 104 | +|[HIST1H2BK](HIST1H2BK)|2|[Rossi et al](papers/rossiCodingGenomeSplenic2012c)[@rossiCodingGenomeSplenic2012c]|[@paneaWholeGenomeLandscape2019; @zhangGeneticHeterogeneityDiffuse2013]| |
|
| 105 | 105 | |[HIST4H4](HIST4H4)|2|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)[@jalladesExomeSequencingIdentifies2017]|| |
| 106 | 106 | |[HRAS](HRAS)|2|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)[@jalladesExomeSequencingIdentifies2017]|[@reddyGeneticFunctionalDrivers2017]| |
| 107 | 107 | |[IKBKB](IKBKB)|2|[Rossi et al](papers/rossiAlterationBIRC3Multiple2011a)[@rossiAlterationBIRC3Multiple2011a]|[@wienandGenomicAnalysesFlowsorted2019b; @reddyGeneticFunctionalDrivers2017]| |
| 108 | 108 | |[KAT6A](KAT6A)|2|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)[@jalladesExomeSequencingIdentifies2017]|| |
| 109 | 109 | |[KDM6A](KDM6A)|2|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)[@jalladesExomeSequencingIdentifies2017]|| |
| 110 | 110 | |[KIF26A](KIF26A)|2|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)[@jalladesExomeSequencingIdentifies2017]|| |
| 111 | -|[LRP1B](LRP1B)|2|[Spina et al](papers/spinaGeneticsNodalMarginal2016b)[@spinaGeneticsNodalMarginal2016b]|| |
|
| 111 | +|[LRP1B](LRP1B)|2|[Spina et al](papers/spinaGeneticsNodalMarginal2016b)[@spinaGeneticsNodalMarginal2016b]|[@zhangGeneticHeterogeneityDiffuse2013]| |
|
| 112 | 112 | |[MCRS1](MCRS1)|2|[Rossi et al](papers/rossiCodingGenomeSplenic2012c)[@rossiCodingGenomeSplenic2012c]|| |
| 113 | 113 | |[MGA](MGA)|2|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)[@jalladesExomeSequencingIdentifies2017]|[@zhangGeneticHeterogeneityDiffuse2013]| |
| 114 | 114 | |[MSL2](MSL2)|2|[Rossi et al](papers/rossiCodingGenomeSplenic2012c)[@rossiCodingGenomeSplenic2012c]|| |
| 115 | -|[MYC](MYC)|2|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)[@jalladesExomeSequencingIdentifies2017]|[@pasqualucciHypermutationMultipleProtooncogenes2001a; @dunsCharacterizationDLBCLPMBL2021b; @johnstonCmycHypermutationBurkitt1992]| |
|
| 115 | +|[MYC](MYC)|2|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)[@jalladesExomeSequencingIdentifies2017]|[@johnstonCmycHypermutationBurkitt1992; @pasqualucciHypermutationMultipleProtooncogenes2001a; @dunsCharacterizationDLBCLPMBL2021b]| |
|
| 116 | 116 | |[MYLK](MYLK)|2|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)[@jalladesExomeSequencingIdentifies2017]|| |
| 117 | 117 | |[NCOA6](NCOA6)|2|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)[@jalladesExomeSequencingIdentifies2017]|| |
| 118 | 118 | |[NRAS](NRAS)|2|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)[@jalladesExomeSequencingIdentifies2017]|| |
| ... | ... | @@ -120,10 +120,10 @@ link-citations: true |
| 120 | 120 | |[PARK2](PARK2)|2|[Spina et al](papers/spinaGeneticsNodalMarginal2016b)[@spinaGeneticsNodalMarginal2016b]|| |
| 121 | 121 | |[PLA2G4D](PLA2G4D)|2|[Parry et al](papers/parryWholeExomeSequencing2013)[@parryWholeExomeSequencing2013]|| |
| 122 | 122 | |[PLXNB3](PLXNB3)|2|[Spina et al](papers/spinaGeneticsNodalMarginal2016b)[@spinaGeneticsNodalMarginal2016b]|[@zhangGenomicLandscapeMantle2014]| |
| 123 | -|[RAF1](RAF1)|2|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)[@jalladesExomeSequencingIdentifies2017]|| |
|
| 124 | -|[RAPGEF2](RAPGEF2)|2||| |
|
| 123 | +|[RAF1](RAF1)|2|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)[@jalladesExomeSequencingIdentifies2017]|[@fanComprehensiveCharacterizationDriver2020b]| |
|
| 124 | +|[RAPGEF2](RAPGEF2)|2||[@zhangGeneticHeterogeneityDiffuse2013]| |
|
| 125 | 125 | |[RCOR1](RCOR1)|2|[Spina et al](papers/spinaGeneticsNodalMarginal2016b)[@spinaGeneticsNodalMarginal2016b]|| |
| 126 | -|[RFTN1](RFTN1)|2||[@dunsCharacterizationDLBCLPMBL2021b; @arthurGenomewideDiscoverySomatic2018]| |
|
| 126 | +|[RFTN1](RFTN1)|2||[@arthurGenomewideDiscoverySomatic2018; @dunsCharacterizationDLBCLPMBL2021b]| |
|
| 127 | 127 | |[ROCK1](ROCK1)|2|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)[@jalladesExomeSequencingIdentifies2017]|| |
| 128 | 128 | |[RPL1L](RPL1L)|2|[Spina et al](papers/spinaGeneticsNodalMarginal2016b)[@spinaGeneticsNodalMarginal2016b]|| |
| 129 | 129 | |[SAMD5](SAMD5)|2|[Spina et al](papers/spinaGeneticsNodalMarginal2016b)[@spinaGeneticsNodalMarginal2016b]|| |
| ... | ... | @@ -134,10 +134,17 @@ link-citations: true |
| 134 | 134 | |[TBK1](TBK1)|2|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)[@jalladesExomeSequencingIdentifies2017]|| |
| 135 | 135 | |[TCTN2](TCTN2)|2|[Spina et al](papers/spinaGeneticsNodalMarginal2016b)[@spinaGeneticsNodalMarginal2016b]|| |
| 136 | 136 | |[TNIP2](TNIP2)|2|[Vandenbrand et al](papers/vandenbrandRecurrentMutationsGenes2017)[@vandenbrandRecurrentMutationsGenes2017]|| |
| 137 | -|[TRRAP](TRRAP)|2|[Rossi et al](papers/rossiCodingGenomeSplenic2012c)[@rossiCodingGenomeSplenic2012c]|[@parryWholeExomeSequencing2013]| |
|
| 137 | +|[TRRAP](TRRAP)|2|[Rossi et al](papers/rossiCodingGenomeSplenic2012c)[@rossiCodingGenomeSplenic2012c]|[@zhangGeneticHeterogeneityDiffuse2013]| |
|
| 138 | 138 | |[USH2A](USH2A)|2|[Parry et al](papers/parryWholeExomeSequencing2013)[@parryWholeExomeSequencing2013]|| |
| 139 | 139 | |[WAC](WAC)|2|[Rossi et al](papers/rossiCodingGenomeSplenic2012c)[@rossiCodingGenomeSplenic2012c]|[@reddyGeneticFunctionalDrivers2017]| |
| 140 | 140 | |[WNK1](WNK1)|2|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)[@jalladesExomeSequencingIdentifies2017]|[@thomasGeneticSubgroupsInform2023; @hubschmannMutationalMechanismsShaping2021b]| |
| 141 | 141 | |
| 142 | +## Tier 3 MZL genes |
|
| 143 | + |
|
| 144 | +### *0 total* |
|
| 145 | + |
|
| 146 | +|Gene|Tier| First MZL evidence | Other entities | |
|
| 147 | +|:-:|:-:|:--|:-| |
|
| 148 | + |
|
| 142 | 149 | |
| 143 | 150 | # References |
PMBL_genes.md
| ... | ... | @@ -16,63 +16,63 @@ link-citations: true |
| 16 | 16 | |Gene|Tier| First PMBL evidence | Other entities | |
| 17 | 17 | |:-:|:-:|:--|:-| |
| 18 | 18 | |[ACTB](ACTB)|1|[Wienand et al](papers/wienandGenomicAnalysesFlowsorted2019b)[@wienandGenomicAnalysesFlowsorted2019b]|[@lohrDiscoveryPrioritizationSomatic2012a]| |
| 19 | -|[ARID1A](ARID1A)|1|[Wienand et al](papers/wienandGenomicAnalysesFlowsorted2019b)[@wienandGenomicAnalysesFlowsorted2019b]|[@krysiakRecurrentSomaticMutations2017b; @zhangGeneticHeterogeneityDiffuse2013; @rossiCodingGenomeSplenic2012c; @loveGeneticLandscapeMutations2012]| |
|
| 19 | +|[ARID1A](ARID1A)|1|[Wienand et al](papers/wienandGenomicAnalysesFlowsorted2019b)[@wienandGenomicAnalysesFlowsorted2019b]|[@rossiCodingGenomeSplenic2012c; @zhangGeneticHeterogeneityDiffuse2013; @loveGeneticLandscapeMutations2012; @krysiakRecurrentSomaticMutations2017b]| |
|
| 20 | 20 | |[ARID5B](ARID5B)|1|[Gomez et al](papers/gomezUltraDeepSequencingReveals2023)[@gomezUltraDeepSequencingReveals2023]|[@reddyGeneticFunctionalDrivers2017]| |
| 21 | -|[B2M](B2M)|1|[Reichel et al](papers/reichelFlowSortingExome2015a)[@reichelFlowSortingExome2015a]|[@morinFrequentMutationHistonemodifying2011; @pararajalingamCodingNoncodingDrivers2020]| |
|
| 21 | +|[B2M](B2M)|1|[Reichel et al](papers/reichelFlowSortingExome2015a)[@reichelFlowSortingExome2015a]|[@pararajalingamCodingNoncodingDrivers2020; @morinFrequentMutationHistonemodifying2011]| |
|
| 22 | 22 | |[BIRC6](BIRC6)|1|[Sarkozy et al](papers/sarkozyMutationalLandscapeGray2021a)[@sarkozyMutationalLandscapeGray2021a]|[@reddyGeneticFunctionalDrivers2017]| |
| 23 | 23 | |[BTG1](BTG1)|1|[Sarkozy et al](papers/sarkozyMutationalLandscapeGray2021a)[@sarkozyMutationalLandscapeGray2021a]|[@burkhardtClinicalRelevanceMolecular2022b; @morinFrequentMutationHistonemodifying2011]| |
| 24 | 24 | |[CD58](CD58)|1|[Schneider et al](papers/schneiderAlterationsCD58Gene2015a)[@schneiderAlterationsCD58Gene2015a]|[@morinFrequentMutationHistonemodifying2011]| |
| 25 | -|[CD83](CD83)|1|[Duns et al](papers/dunsCharacterizationDLBCLPMBL2021b)[@dunsCharacterizationDLBCLPMBL2021b]|[@morinMutationalStructuralAnalysis2013; @paneaWholeGenomeLandscape2019; @russler-germainMutationsAssociatedProgression2023b]| |
|
| 26 | -|[CDKN2A](CDKN2A)|1||[@spinaGeneticsNodalMarginal2016b; @grandeGenomewideDiscoverySomatic2019; @morinMutationalStructuralAnalysis2013]| |
|
| 27 | -|[CHD8](CHD8)|1||[@reddyGeneticFunctionalDrivers2017; @grandeGenomewideDiscoverySomatic2019]| |
|
| 25 | +|[CD83](CD83)|1|[Duns et al](papers/dunsCharacterizationDLBCLPMBL2021b)[@dunsCharacterizationDLBCLPMBL2021b]|[@paneaWholeGenomeLandscape2019; @russler-germainMutationsAssociatedProgression2023b; @morinMutationalStructuralAnalysis2013]| |
|
| 26 | +|[CDKN2A](CDKN2A)|1||[@spinaGeneticsNodalMarginal2016b; @morinMutationalStructuralAnalysis2013; @grandeGenomewideDiscoverySomatic2019]| |
|
| 27 | +|[CHD8](CHD8)|1||[@grandeGenomewideDiscoverySomatic2019]| |
|
| 28 | 28 | |[CIITA](CIITA)|1|[Mottok et al](papers/mottokGenomicAlterationsCIITA2015b)[@mottokGenomicAlterationsCIITA2015b]|[@morinFrequentMutationHistonemodifying2011]| |
| 29 | 29 | |[CISH](CISH)|1|[Mottok et al](papers/mottokIntegrativeGenomicAnalysis2019b)[@mottokIntegrativeGenomicAnalysis2019b]|| |
| 30 | -|[CREBBP](CREBBP)|1|[Duns et al](papers/dunsCharacterizationDLBCLPMBL2021b)[@dunsCharacterizationDLBCLPMBL2021b]|[@parryWholeExomeSequencing2013; @loveGeneticLandscapeMutations2012; @pasqualucciInactivatingMutationsAcetyltransferase2011a]| |
|
| 30 | +|[CREBBP](CREBBP)|1|[Duns et al](papers/dunsCharacterizationDLBCLPMBL2021b)[@dunsCharacterizationDLBCLPMBL2021b]|[@parryWholeExomeSequencing2013; @pasqualucciInactivatingMutationsAcetyltransferase2011a; @loveGeneticLandscapeMutations2012]| |
|
| 31 | 31 | |[CSF2RB](CSF2RB)|1|[Reichel et al](papers/reichelFlowSortingExome2015a)[@reichelFlowSortingExome2015a]|| |
| 32 | -|[DDX3X](DDX3X)|1|[Mottok et al](papers/mottokIntegrativeGenomicAnalysis2019b)[@mottokIntegrativeGenomicAnalysis2019b]|[@schmitzGeneticsPathogenesisDiffuse2018a; @schmitzBurkittLymphomaPathogenesis2012]| |
|
| 33 | -|[DTX1](DTX1)|1|[Gomez et al](papers/gomezUltraDeepSequencingReveals2023)[@gomezUltraDeepSequencingReveals2023]|[@schmitzGeneticsPathogenesisDiffuse2018a; @rossiCodingGenomeSplenic2012c; @loveGeneticLandscapeMutations2012]| |
|
| 32 | +|[DDX3X](DDX3X)|1|[Mottok et al](papers/mottokIntegrativeGenomicAnalysis2019b)[@mottokIntegrativeGenomicAnalysis2019b]|[@schmitzBurkittLymphomaPathogenesis2012; @reddyGeneticFunctionalDrivers2017]| |
|
| 33 | +|[DTX1](DTX1)|1|[Gomez et al](papers/gomezUltraDeepSequencingReveals2023)[@gomezUltraDeepSequencingReveals2023]|[@loveGeneticLandscapeMutations2012; @rossiCodingGenomeSplenic2012c; @zhangGeneticHeterogeneityDiffuse2013]| |
|
| 34 | 34 | |[DUSP2](DUSP2)|1|[Duns et al](papers/dunsCharacterizationDLBCLPMBL2021b)[@dunsCharacterizationDLBCLPMBL2021b]|[@lohrDiscoveryPrioritizationSomatic2012a]| |
| 35 | -|[EBF1](EBF1)|1|[Reichel et al](papers/reichelFlowSortingExome2015a)[@reichelFlowSortingExome2015a]|[@bohleRoleEarlyBcell2013; @thomasGeneticSubgroupsInform2023]| |
|
| 35 | +|[EBF1](EBF1)|1|[Reichel et al](papers/reichelFlowSortingExome2015a)[@reichelFlowSortingExome2015a]|[@thomasGeneticSubgroupsInform2023; @bohleRoleEarlyBcell2013]| |
|
| 36 | 36 | |[EEF1A1](EEF1A1)|1|[Reichel et al](papers/reichelFlowSortingExome2015a)[@reichelFlowSortingExome2015a]|[@hubschmannMutationalMechanismsShaping2021b]| |
| 37 | 37 | |[ETS1](ETS1)|1||[@paneaWholeGenomeLandscape2019; @morinFrequentMutationHistonemodifying2011]| |
| 38 | 38 | |[EWSR1](EWSR1)|1||[@pararajalingamCodingNoncodingDrivers2020]| |
| 39 | -|[EZH2](EZH2)|1|[Mottok et al](papers/mottokIntegrativeGenomicAnalysis2019b)[@mottokIntegrativeGenomicAnalysis2019b]|[@loveGeneticLandscapeMutations2012; @morinSomaticMutationsAltering2010a]| |
|
| 39 | +|[EZH2](EZH2)|1|[Mottok et al](papers/mottokIntegrativeGenomicAnalysis2019b)[@mottokIntegrativeGenomicAnalysis2019b]|[@morinSomaticMutationsAltering2010a; @loveGeneticLandscapeMutations2012]| |
|
| 40 | 40 | |[FAS](FAS)|1||[@spinaGeneticsNodalMarginal2016b; @schollMutationsRegionFAS2007]| |
| 41 | 41 | |[FAT1](FAT1)|1||[@spinaGeneticsNodalMarginal2016b]| |
| 42 | -|[FAT4](FAT4)|1||[@morinMutationalStructuralAnalysis2013; @parryWholeExomeSequencing2013; @zhangGenomicLandscapeMantle2014]| |
|
| 42 | +|[FAT4](FAT4)|1||[@morinMutationalStructuralAnalysis2013; @zhangGenomicLandscapeMantle2014; @parryWholeExomeSequencing2013]| |
|
| 43 | 43 | |[GNA13](GNA13)|1|[Reichel et al](papers/reichelFlowSortingExome2015a)[@reichelFlowSortingExome2015a]|[@morinFrequentMutationHistonemodifying2011; @loveGeneticLandscapeMutations2012]| |
| 44 | -|[HIST1H1B](HIST1H1B)|1|[Sarkozy et al](papers/sarkozyMutationalLandscapeGray2021a)[@sarkozyMutationalLandscapeGray2021a]|[@krysiakRecurrentSomaticMutations2017b; @chapuyMolecularSubtypesDiffuse2018b]| |
|
| 45 | -|[HIST1H1C](HIST1H1C)|1||[@morinFrequentMutationHistonemodifying2011; @paneaWholeGenomeLandscape2019]| |
|
| 46 | -|[HIST1H1D](HIST1H1D)|1||[@jalladesExomeSequencingIdentifies2017; @morinMutationalStructuralAnalysis2013; @krysiakRecurrentSomaticMutations2017b]| |
|
| 47 | -|[HIST1H1E](HIST1H1E)|1|[Reichel et al](papers/reichelFlowSortingExome2015a)[@reichelFlowSortingExome2015a]|[@krysiakRecurrentSomaticMutations2017b; @lohrDiscoveryPrioritizationSomatic2012a; @grandeGenomewideDiscoverySomatic2019]| |
|
| 44 | +|[HIST1H1B](HIST1H1B)|1|[Sarkozy et al](papers/sarkozyMutationalLandscapeGray2021a)[@sarkozyMutationalLandscapeGray2021a]|[@chapuyMolecularSubtypesDiffuse2018b; @krysiakRecurrentSomaticMutations2017b]| |
|
| 45 | +|[HIST1H1C](HIST1H1C)|1||[@paneaWholeGenomeLandscape2019; @morinFrequentMutationHistonemodifying2011]| |
|
| 46 | +|[HIST1H1D](HIST1H1D)|1||[@morinMutationalStructuralAnalysis2013; @jalladesExomeSequencingIdentifies2017; @krysiakRecurrentSomaticMutations2017b]| |
|
| 47 | +|[HIST1H1E](HIST1H1E)|1|[Reichel et al](papers/reichelFlowSortingExome2015a)[@reichelFlowSortingExome2015a]|[@krysiakRecurrentSomaticMutations2017b; @grandeGenomewideDiscoverySomatic2019; @lohrDiscoveryPrioritizationSomatic2012a]| |
|
| 48 | 48 | |[HLA-B](HLA-B)|1|[Wienand et al](papers/wienandGenomicAnalysesFlowsorted2019b)[@wienandGenomicAnalysesFlowsorted2019b]|[@lohrDiscoveryPrioritizationSomatic2012a]| |
| 49 | 49 | |[IL4R](IL4R)|1|[Vigano et al](papers/viganoSomaticIL4RMutations2018b)[@viganoSomaticIL4RMutations2018b]|[@dunsCharacterizationDLBCLPMBL2021b]| |
| 50 | 50 | |[IRF8](IRF8)|1|[Mottok et al](papers/mottokIntegrativeGenomicAnalysis2019b)[@mottokIntegrativeGenomicAnalysis2019b]|[@morinFrequentMutationHistonemodifying2011; @paneaWholeGenomeLandscape2019]| |
| 51 | 51 | |[ITPKB](ITPKB)|1|[Reichel et al](papers/reichelFlowSortingExome2015a)[@reichelFlowSortingExome2015a]|[@schmitzGeneticsPathogenesisDiffuse2018a]| |
| 52 | 52 | |[JAK1](JAK1)|1|[Mottok et al](papers/mottokIntegrativeGenomicAnalysis2019b)[@mottokIntegrativeGenomicAnalysis2019b]|[@zhangGeneticHeterogeneityDiffuse2013]| |
| 53 | 53 | |[KMT2C](KMT2C)|1|[Sarkozy et al](papers/sarkozyMutationalLandscapeGray2021a)[@sarkozyMutationalLandscapeGray2021a]|[@zhangGenomicLandscapeMantle2014; @zhouSporadicEndemicBurkitt2019; @zhangGeneticHeterogeneityDiffuse2013]| |
| 54 | -|[LTB](LTB)|1|[Desch et al](papers/deschGenotypingCirculatingTumor2020)[@deschGenotypingCirculatingTumor2020]|[@paneaWholeGenomeLandscape2019; @chapuyMolecularSubtypesDiffuse2018b]| |
|
| 54 | +|[LTB](LTB)|1|[Desch et al](papers/deschGenotypingCirculatingTumor2020)[@deschGenotypingCirculatingTumor2020]|[@chapuyMolecularSubtypesDiffuse2018b]| |
|
| 55 | 55 | |[MAP3K14](MAP3K14)|1|[Otto et al](papers/ottoGeneticLesionsTRAF32012a)[@ottoGeneticLesionsTRAF32012a]|[@rossiAlterationBIRC3Multiple2011a]| |
| 56 | 56 | |[MS4A1](MS4A1)|1|[Mottok et al](papers/mottokIntegrativeGenomicAnalysis2019b)[@mottokIntegrativeGenomicAnalysis2019b]|[@rushtonGeneticEvolutionaryPatterns2020]| |
| 57 | 57 | |[NFKBIA](NFKBIA)|1|[Wienand et al](papers/wienandGenomicAnalysesFlowsorted2019b)[@wienandGenomicAnalysesFlowsorted2019b]|[@lakeMutationsNFKBIAEncoding2009; @russler-germainMutationsAssociatedProgression2023b]| |
| 58 | 58 | |[NFKBIE](NFKBIE)|1|[Mansouri et al](papers/mansouriFrequentNFKBIEDeletions2016)[@mansouriFrequentNFKBIEDeletions2016]|[@morinGeneticLandscapesRelapsed2016; @pararajalingamCodingNoncodingDrivers2020]| |
| 59 | -|[OSBPL10](OSBPL10)|1||[@arthurGenomewideDiscoverySomatic2018]| |
|
| 60 | -|[P2RY8](P2RY8)|1||[@lohrDiscoveryPrioritizationSomatic2012a; @muppidiLossSignalingGa132014b]| |
|
| 59 | +|[OSBPL10](OSBPL10)|1||[@zhangGeneticHeterogeneityDiffuse2013]| |
|
| 60 | +|[P2RY8](P2RY8)|1||[@muppidiLossSignalingGa132014b; @lohrDiscoveryPrioritizationSomatic2012a]| |
|
| 61 | 61 | |[PCLO](PCLO)|1||[@lohrDiscoveryPrioritizationSomatic2012a]| |
| 62 | 62 | |[PHIP](PHIP)|1||| |
| 63 | -|[PIM1](PIM1)|1|[Duns et al](papers/dunsCharacterizationDLBCLPMBL2021b)[@dunsCharacterizationDLBCLPMBL2021b]|[@pasqualucciHypermutationMultipleProtooncogenes2001a; @burkhardtClinicalRelevanceMolecular2022b]| |
|
| 63 | +|[PIM1](PIM1)|1|[Duns et al](papers/dunsCharacterizationDLBCLPMBL2021b)[@dunsCharacterizationDLBCLPMBL2021b]|[@burkhardtClinicalRelevanceMolecular2022b; @pasqualucciHypermutationMultipleProtooncogenes2001a]| |
|
| 64 | 64 | |[PIM2](PIM2)|1|[Reichel et al](papers/reichelFlowSortingExome2015a)[@reichelFlowSortingExome2015a]|[@arthurGenomewideDiscoverySomatic2018]| |
| 65 | -|[PRKDC](PRKDC)|1||[@schmitzGeneticsPathogenesisDiffuse2018a; @hubschmannMutationalMechanismsShaping2021b]| |
|
| 65 | +|[PRKDC](PRKDC)|1||[@hubschmannMutationalMechanismsShaping2021b; @schmitzGeneticsPathogenesisDiffuse2018a]| |
|
| 66 | 66 | |[PTPN1](PTPN1)|1|[Gunawardana et al](papers/gunawardanaRecurrentSomaticMutations2014c)[@gunawardanaRecurrentSomaticMutations2014c]|| |
| 67 | 67 | |[PTPRD](PTPRD)|1||[@spinaGeneticsNodalMarginal2016b]| |
| 68 | -|[RHOA](RHOA)|1||[@richterRecurrentMutationID32012a]| |
|
| 68 | +|[RHOA](RHOA)|1||[@richterRecurrentMutationID32012a; @zhangGeneticHeterogeneityDiffuse2013]| |
|
| 69 | 69 | |[S1PR2](S1PR2)|1||[@muppidiLossSignalingGa132014b; @morinFrequentMutationHistonemodifying2011]| |
| 70 | 70 | |[SGK1](SGK1)|1|[Duns et al](papers/dunsCharacterizationDLBCLPMBL2021b)[@dunsCharacterizationDLBCLPMBL2021b]|[@morinFrequentMutationHistonemodifying2011]| |
| 71 | -|[SIN3A](SIN3A)|1||[@grandeGenomewideDiscoverySomatic2019; @rossiCodingGenomeSplenic2012c]| |
|
| 71 | +|[SIN3A](SIN3A)|1||[@chapuyMolecularSubtypesDiffuse2018b; @grandeGenomewideDiscoverySomatic2019; @rossiCodingGenomeSplenic2012c]| |
|
| 72 | 72 | |[SMARCA2](SMARCA2)|1||| |
| 73 | -|[SMARCA4](SMARCA4)|1||[@krysiakRecurrentSomaticMutations2017b; @lohrDiscoveryPrioritizationSomatic2012a; @richterRecurrentMutationID32012a; @nadeuGenomicEpigenomicInsights2020b]| |
|
| 73 | +|[SMARCA4](SMARCA4)|1||[@lohrDiscoveryPrioritizationSomatic2012a; @nadeuGenomicEpigenomicInsights2020b; @krysiakRecurrentSomaticMutations2017b; @richterRecurrentMutationID32012a]| |
|
| 74 | 74 | |[SOCS1](SOCS1)|1|[Weniger et al](papers/wenigerMutationsTumorSuppressor2006a)[@wenigerMutationsTumorSuppressor2006a]|[@morinFrequentMutationHistonemodifying2011]| |
| 75 | -|[SPEN](SPEN)|1|[Sarkozy et al](papers/sarkozyMutationalLandscapeGray2021a)[@sarkozyMutationalLandscapeGray2021a]|[@rossiCodingGenomeSplenic2012c]| |
|
| 75 | +|[SPEN](SPEN)|1|[Sarkozy et al](papers/sarkozyMutationalLandscapeGray2021a)[@sarkozyMutationalLandscapeGray2021a]|[@albuquerqueEnhancingKnowledgeDiscovery2017a; @rossiCodingGenomeSplenic2012c]| |
|
| 76 | 76 | |[STAT3](STAT3)|1||[@lohrDiscoveryPrioritizationSomatic2012a]| |
| 77 | 77 | |[STAT6](STAT6)|1|[Ritz et al](papers/ritzRecurrentMutationsSTAT62009a)[@ritzRecurrentMutationsSTAT62009a]|[@yildizActivatingSTAT6Mutations2015c]| |
| 78 | 78 | |[TAP1](TAP1)|1||[@schmitzGeneticsPathogenesisDiffuse2018a]| |
| ... | ... | @@ -80,17 +80,17 @@ link-citations: true |
| 80 | 80 | |[TCF3](TCF3)|1||[@schmitzBurkittLymphomaPathogenesis2012]| |
| 81 | 81 | |[TET3](TET3)|1||| |
| 82 | 82 | |[TMSB4X](TMSB4X)|1||[@albuquerqueEnhancingKnowledgeDiscovery2017a]| |
| 83 | -|[TNFAIP3](TNFAIP3)|1|[Schmitz et al](papers/schmitzTNFAIP3A20Tumor2009a)[@schmitzTNFAIP3A20Tumor2009a]|[@rossiAlterationBIRC3Multiple2011a; @compagnoMutationsMultipleGenes2009a]| |
|
| 83 | +|[TNFAIP3](TNFAIP3)|1|[Schmitz et al](papers/schmitzTNFAIP3A20Tumor2009a)[@schmitzTNFAIP3A20Tumor2009a]|[@compagnoMutationsMultipleGenes2009a; @rossiAlterationBIRC3Multiple2011a]| |
|
| 84 | 84 | |[TNFRSF1B](TNFRSF1B)|1||| |
| 85 | -|[TP53](TP53)|1|[Tiacci et al](papers/tiacciPervasiveMutationsJAKSTAT2018b)[@tiacciPervasiveMutationsJAKSTAT2018b]|[@rossiCodingGenomeSplenic2012c; @lohrDiscoveryPrioritizationSomatic2012a; @beaLandscapeSomaticMutations2013; @wildaInactivationARFMDM2p53Pathway2004; @morinFrequentMutationHistonemodifying2011]| |
|
| 86 | -|[TRAF3](TRAF3)|1|[Otto et al](papers/ottoGeneticLesionsTRAF32012a)[@ottoGeneticLesionsTRAF32012a]|[@rossiAlterationBIRC3Multiple2011a; @pasqualucciAnalysisCodingGenome2011]| |
|
| 85 | +|[TP53](TP53)|1|[Tiacci et al](papers/tiacciPervasiveMutationsJAKSTAT2018b)[@tiacciPervasiveMutationsJAKSTAT2018b]|[@beaLandscapeSomaticMutations2013; @lohrDiscoveryPrioritizationSomatic2012a; @rossiCodingGenomeSplenic2012c; @wildaInactivationARFMDM2p53Pathway2004; @morinFrequentMutationHistonemodifying2011]| |
|
| 86 | +|[TRAF3](TRAF3)|1|[Otto et al](papers/ottoGeneticLesionsTRAF32012a)[@ottoGeneticLesionsTRAF32012a]|[@pasqualucciAnalysisCodingGenome2011; @rossiAlterationBIRC3Multiple2011a]| |
|
| 87 | 87 | |[UBE2A](UBE2A)|1|[Reichel et al](papers/reichelFlowSortingExome2015a)[@reichelFlowSortingExome2015a]|[@lohrDiscoveryPrioritizationSomatic2012a]| |
| 88 | 88 | |[UBR5](UBR5)|1||[@zhangGeneticHeterogeneityDiffuse2013; @pararajalingamCodingNoncodingDrivers2020]| |
| 89 | 89 | |[UNC5C](UNC5C)|1||[@lohrDiscoveryPrioritizationSomatic2012a]| |
| 90 | 90 | |[VPS13B](VPS13B)|1||[@lohrDiscoveryPrioritizationSomatic2012a]| |
| 91 | 91 | |[WEE1](WEE1)|1|[Reichel et al](papers/reichelFlowSortingExome2015a)[@reichelFlowSortingExome2015a]|[@schmitzGeneticsPathogenesisDiffuse2018a]| |
| 92 | 92 | |[XPO1](XPO1)|1|[Jardin et al](papers/jardinRecurrentMutationsExportin2016a)[@jardinRecurrentMutationsExportin2016a]|[@mareschalWholeExomeSequencing2016]| |
| 93 | -|[ZFP36L1](ZFP36L1)|1|[Reichel et al](papers/reichelFlowSortingExome2015a)[@reichelFlowSortingExome2015a]|[@morinFrequentMutationHistonemodifying2011; @paneaWholeGenomeLandscape2019]| |
|
| 93 | +|[ZFP36L1](ZFP36L1)|1|[Reichel et al](papers/reichelFlowSortingExome2015a)[@reichelFlowSortingExome2015a]|[@paneaWholeGenomeLandscape2019; @morinFrequentMutationHistonemodifying2011]| |
|
| 94 | 94 | |
| 95 | 95 | ## Tier 2 PMBL genes |
| 96 | 96 | |
| ... | ... | @@ -99,38 +99,38 @@ link-citations: true |
| 99 | 99 | |Gene|Tier| First PMBL evidence | Other entities | |
| 100 | 100 | |:-:|:-:|:--|:-| |
| 101 | 101 | |[ABCA13](ABCA13)|2|[Sarkozy et al](papers/sarkozyMutationalLandscapeGray2021a)[@sarkozyMutationalLandscapeGray2021a]|[@spinaGeneticsNodalMarginal2016b]| |
| 102 | -|[ACTG1](ACTG1)|2|[Desch et al](papers/deschGenotypingCirculatingTumor2020)[@deschGenotypingCirculatingTumor2020]|[@hubschmannMutationalMechanismsShaping2021b; @spinaGeneticsNodalMarginal2016b]| |
|
| 102 | +|[ACTG1](ACTG1)|2|[Desch et al](papers/deschGenotypingCirculatingTumor2020)[@deschGenotypingCirculatingTumor2020]|[@spinaGeneticsNodalMarginal2016b; @hubschmannMutationalMechanismsShaping2021b]| |
|
| 103 | 103 | |[AKAP6](AKAP6)|2|[Tiacci et al](papers/tiacciPervasiveMutationsJAKSTAT2018b)[@tiacciPervasiveMutationsJAKSTAT2018b]|| |
| 104 | 104 | |[ARIH2](ARIH2)|2|[Reichel et al](papers/reichelFlowSortingExome2015a)[@reichelFlowSortingExome2015a]|| |
| 105 | 105 | |[AXDND1](AXDND1)|2|[Gomez et al](papers/gomezUltraDeepSequencingReveals2023)[@gomezUltraDeepSequencingReveals2023]|| |
| 106 | -|[BCL2](BCL2)|2|[Sarkozy et al](papers/sarkozyMutationalLandscapeGray2021a)[@sarkozyMutationalLandscapeGray2021a]|[@morinFrequentMutationHistonemodifying2011; @tanakaFrequentIncidenceSomatic1992; @burkhardtClinicalRelevanceMolecular2022b]| |
|
| 107 | -|[BCL7A](BCL7A)|2|[Reichel et al](papers/reichelFlowSortingExome2015a)[@reichelFlowSortingExome2015a]|[@grandeGenomewideDiscoverySomatic2019; @krysiakRecurrentSomaticMutations2017b; @arthurGenomewideDiscoverySomatic2018]| |
|
| 108 | -|[BIRC3](BIRC3)|2|[Duns et al](papers/dunsCharacterizationDLBCLPMBL2021b)[@dunsCharacterizationDLBCLPMBL2021b]|[@beaLandscapeSomaticMutations2013; @arthurGenomewideDiscoverySomatic2018; @rossiAlterationBIRC3Multiple2011a]| |
|
| 109 | -|[CCND3](CCND3)|2|[Desch et al](papers/deschGenotypingCirculatingTumor2020)[@deschGenotypingCirculatingTumor2020]|[@richterRecurrentMutationID32012a; @jalladesExomeSequencingIdentifies2017; @morinFrequentMutationHistonemodifying2011]| |
|
| 106 | +|[BCL2](BCL2)|2|[Sarkozy et al](papers/sarkozyMutationalLandscapeGray2021a)[@sarkozyMutationalLandscapeGray2021a]|[@tanakaFrequentIncidenceSomatic1992; @burkhardtClinicalRelevanceMolecular2022b; @morinFrequentMutationHistonemodifying2011]| |
|
| 107 | +|[BCL7A](BCL7A)|2|[Reichel et al](papers/reichelFlowSortingExome2015a)[@reichelFlowSortingExome2015a]|[@krysiakRecurrentSomaticMutations2017b; @grandeGenomewideDiscoverySomatic2019; @zhangGeneticHeterogeneityDiffuse2013]| |
|
| 108 | +|[BIRC3](BIRC3)|2|[Duns et al](papers/dunsCharacterizationDLBCLPMBL2021b)[@dunsCharacterizationDLBCLPMBL2021b]|[@rossiAlterationBIRC3Multiple2011a; @beaLandscapeSomaticMutations2013; @arthurGenomewideDiscoverySomatic2018]| |
|
| 109 | +|[CCND3](CCND3)|2|[Desch et al](papers/deschGenotypingCirculatingTumor2020)[@deschGenotypingCirculatingTumor2020]|[@morinFrequentMutationHistonemodifying2011; @jalladesExomeSequencingIdentifies2017; @richterRecurrentMutationID32012a]| |
|
| 110 | 110 | |[CDH2](CDH2)|2|[Desch et al](papers/deschGenotypingCirculatingTumor2020)[@deschGenotypingCirculatingTumor2020]|| |
| 111 | 111 | |[CDH5](CDH5)|2|[Gomez et al](papers/gomezUltraDeepSequencingReveals2023)[@gomezUltraDeepSequencingReveals2023]|| |
| 112 | 112 | |[CXCR5](CXCR5)|2|[Mottok et al](papers/mottokIntegrativeGenomicAnalysis2019b)[@mottokIntegrativeGenomicAnalysis2019b]|[@schmitzGeneticsPathogenesisDiffuse2018a]| |
| 113 | 113 | |[DGKB](DGKB)|2|[Tiacci et al](papers/tiacciPervasiveMutationsJAKSTAT2018b)[@tiacciPervasiveMutationsJAKSTAT2018b]|| |
| 114 | 114 | |[DMD](DMD)|2|[Reichel et al](papers/reichelFlowSortingExome2015a)[@reichelFlowSortingExome2015a]|| |
| 115 | 115 | |[DNAH12](DNAH12)|2|[Wienand et al](papers/wienandGenomicAnalysesFlowsorted2019b)[@wienandGenomicAnalysesFlowsorted2019b]|| |
| 116 | -|[EGR1](EGR1)|2|[Reichel et al](papers/reichelFlowSortingExome2015a)[@reichelFlowSortingExome2015a]|[@krysiakRecurrentSomaticMutations2017b; @rossiCodingGenomeSplenic2012c]| |
|
| 117 | -|[EPHA7](EPHA7)|2|[Mottok et al](papers/mottokIntegrativeGenomicAnalysis2019b)[@mottokIntegrativeGenomicAnalysis2019b]|| |
|
| 116 | +|[EGR1](EGR1)|2|[Reichel et al](papers/reichelFlowSortingExome2015a)[@reichelFlowSortingExome2015a]|[@rossiCodingGenomeSplenic2012c; @krysiakRecurrentSomaticMutations2017b]| |
|
| 117 | +|[EPHA7](EPHA7)|2|[Mottok et al](papers/mottokIntegrativeGenomicAnalysis2019b)[@mottokIntegrativeGenomicAnalysis2019b]|[@zhangGeneticHeterogeneityDiffuse2013]| |
|
| 118 | 118 | |[EZR](EZR)|2|[Desch et al](papers/deschGenotypingCirculatingTumor2020)[@deschGenotypingCirculatingTumor2020]|| |
| 119 | 119 | |[FOXO1](FOXO1)|2|[Duns et al](papers/dunsCharacterizationDLBCLPMBL2021b)[@dunsCharacterizationDLBCLPMBL2021b]|[@schmitzBurkittLymphomaPathogenesis2012; @morinFrequentMutationHistonemodifying2011]| |
| 120 | 120 | |[GCSAM](GCSAM)|2|[Mottok et al](papers/mottokIntegrativeGenomicAnalysis2019b)[@mottokIntegrativeGenomicAnalysis2019b]|| |
| 121 | 121 | |[GPR126](GPR126)|2|[Weniger et al](papers/wenigerMutationsTumorSuppressor2006a)[@wenigerMutationsTumorSuppressor2006a]|| |
| 122 | 122 | |[HECW2](HECW2)|2|[Reichel et al](papers/reichelFlowSortingExome2015a)[@reichelFlowSortingExome2015a]|| |
| 123 | 123 | |[HELLS](HELLS)|2|[Reichel et al](papers/reichelFlowSortingExome2015a)[@reichelFlowSortingExome2015a]|| |
| 124 | -|[HIST1H2BC](HIST1H2BC)|2|[Mottok et al](papers/mottokIntegrativeGenomicAnalysis2019b)[@mottokIntegrativeGenomicAnalysis2019b]|[@lohrDiscoveryPrioritizationSomatic2012a; @krysiakRecurrentSomaticMutations2017b]| |
|
| 124 | +|[HIST1H2BC](HIST1H2BC)|2|[Mottok et al](papers/mottokIntegrativeGenomicAnalysis2019b)[@mottokIntegrativeGenomicAnalysis2019b]|[@krysiakRecurrentSomaticMutations2017b; @lohrDiscoveryPrioritizationSomatic2012a]| |
|
| 125 | 125 | |[HIST1H3B](HIST1H3B)|2|[Reichel et al](papers/reichelFlowSortingExome2015a)[@reichelFlowSortingExome2015a]|[@lohrDiscoveryPrioritizationSomatic2012a]| |
| 126 | 126 | |[HIST1H4C](HIST1H4C)|2|[Reichel et al](papers/reichelFlowSortingExome2015a)[@reichelFlowSortingExome2015a]|| |
| 127 | 127 | |[HIST1H4E](HIST1H4E)|2|[Mottok et al](papers/mottokIntegrativeGenomicAnalysis2019b)[@mottokIntegrativeGenomicAnalysis2019b]|| |
| 128 | 128 | |[HIST1H4J](HIST1H4J)|2|[Mottok et al](papers/mottokIntegrativeGenomicAnalysis2019b)[@mottokIntegrativeGenomicAnalysis2019b]|[@paneaWholeGenomeLandscape2019]| |
| 129 | 129 | |[HLA-A](HLA-A)|2|[Desch et al](papers/deschGenotypingCirculatingTumor2020)[@deschGenotypingCirculatingTumor2020]|[@lohrDiscoveryPrioritizationSomatic2012a]| |
| 130 | -|[HLA-C](HLA-C)|2|[Gomez et al](papers/gomezUltraDeepSequencingReveals2023)[@gomezUltraDeepSequencingReveals2023]|| |
|
| 130 | +|[HLA-C](HLA-C)|2|[Gomez et al](papers/gomezUltraDeepSequencingReveals2023)[@gomezUltraDeepSequencingReveals2023]|[@chapuyMolecularSubtypesDiffuse2018b]| |
|
| 131 | 131 | |[HRNR](HRNR)|2|[Duns et al](papers/dunsCharacterizationDLBCLPMBL2021b)[@dunsCharacterizationDLBCLPMBL2021b]|| |
| 132 | -|[IGLL5](IGLL5)|2|[Desch et al](papers/deschGenotypingCirculatingTumor2020)[@deschGenotypingCirculatingTumor2020]|[@russler-germainMutationsAssociatedProgression2023b; @paneaWholeGenomeLandscape2019]| |
|
| 133 | -|[IKBKB](IKBKB)|2|[Wienand et al](papers/wienandGenomicAnalysesFlowsorted2019b)[@wienandGenomicAnalysesFlowsorted2019b]|[@rossiAlterationBIRC3Multiple2011a; @reddyGeneticFunctionalDrivers2017]| |
|
| 132 | +|[IGLL5](IGLL5)|2|[Desch et al](papers/deschGenotypingCirculatingTumor2020)[@deschGenotypingCirculatingTumor2020]|[@paneaWholeGenomeLandscape2019; @russler-germainMutationsAssociatedProgression2023b; @chapuyMolecularSubtypesDiffuse2018b]| |
|
| 133 | +|[IKBKB](IKBKB)|2|[Wienand et al](papers/wienandGenomicAnalysesFlowsorted2019b)[@wienandGenomicAnalysesFlowsorted2019b]|[@reddyGeneticFunctionalDrivers2017; @rossiAlterationBIRC3Multiple2011a]| |
|
| 134 | 134 | |[IL13RA1](IL13RA1)|2|[Mottok et al](papers/mottokIntegrativeGenomicAnalysis2019b)[@mottokIntegrativeGenomicAnalysis2019b]|| |
| 135 | 135 | |[IL1RAPL2](IL1RAPL2)|2|[Mottok et al](papers/mottokIntegrativeGenomicAnalysis2019b)[@mottokIntegrativeGenomicAnalysis2019b]|| |
| 136 | 136 | |[IRF2BP2](IRF2BP2)|2|[Mottok et al](papers/mottokIntegrativeGenomicAnalysis2019b)[@mottokIntegrativeGenomicAnalysis2019b]|| |
| ... | ... | @@ -139,31 +139,31 @@ link-citations: true |
| 139 | 139 | |[ITPR3](ITPR3)|2|[Tiacci et al](papers/tiacciPervasiveMutationsJAKSTAT2018b)[@tiacciPervasiveMutationsJAKSTAT2018b]|[@loveGeneticLandscapeMutations2012]| |
| 140 | 140 | |[JUNB](JUNB)|2|[Mottok et al](papers/mottokIntegrativeGenomicAnalysis2019b)[@mottokIntegrativeGenomicAnalysis2019b]|[@reddyGeneticFunctionalDrivers2017]| |
| 141 | 141 | |[KLF2](KLF2)|2|[Desch et al](papers/deschGenotypingCirculatingTumor2020)[@deschGenotypingCirculatingTumor2020]|[@pasqualucciAnalysisCodingGenome2011; @jalladesExomeSequencingIdentifies2017]| |
| 142 | -|[KMT2D](KMT2D)|2|[Desch et al](papers/deschGenotypingCirculatingTumor2020)[@deschGenotypingCirculatingTumor2020]|[@rossiCodingGenomeSplenic2012c; @grandeGenomewideDiscoverySomatic2019; @beaLandscapeSomaticMutations2013; @morinFrequentMutationHistonemodifying2011]| |
|
| 142 | +|[KMT2D](KMT2D)|2|[Desch et al](papers/deschGenotypingCirculatingTumor2020)[@deschGenotypingCirculatingTumor2020]|[@beaLandscapeSomaticMutations2013; @morinFrequentMutationHistonemodifying2011; @rossiCodingGenomeSplenic2012c; @grandeGenomewideDiscoverySomatic2019]| |
|
| 143 | 143 | |[LIMD2](LIMD2)|2|[Gomez et al](papers/gomezUltraDeepSequencingReveals2023)[@gomezUltraDeepSequencingReveals2023]|| |
| 144 | 144 | |[LPHN3](LPHN3)|2|[Duns et al](papers/dunsCharacterizationDLBCLPMBL2021b)[@dunsCharacterizationDLBCLPMBL2021b]|| |
| 145 | -|[LRRN3](LRRN3)|2|[Sarkozy et al](papers/sarkozyMutationalLandscapeGray2021a)[@sarkozyMutationalLandscapeGray2021a]|[@morinMutationalStructuralAnalysis2013]| |
|
| 145 | +|[LRRN3](LRRN3)|2|[Sarkozy et al](papers/sarkozyMutationalLandscapeGray2021a)[@sarkozyMutationalLandscapeGray2021a]|[@zhangGeneticHeterogeneityDiffuse2013]| |
|
| 146 | 146 | |[MAGEC2](MAGEC2)|2|[Mottok et al](papers/mottokIntegrativeGenomicAnalysis2019b)[@mottokIntegrativeGenomicAnalysis2019b]|| |
| 147 | -|[MCL1](MCL1)|2|[Duns et al](papers/dunsCharacterizationDLBCLPMBL2021b)[@dunsCharacterizationDLBCLPMBL2021b]|[@paneaWholeGenomeLandscape2019; @reddyGeneticFunctionalDrivers2017]| |
|
| 147 | +|[MCL1](MCL1)|2|[Duns et al](papers/dunsCharacterizationDLBCLPMBL2021b)[@dunsCharacterizationDLBCLPMBL2021b]|[@reddyGeneticFunctionalDrivers2017; @paneaWholeGenomeLandscape2019]| |
|
| 148 | 148 | |[MFHAS1](MFHAS1)|2|[Sarkozy et al](papers/sarkozyMutationalLandscapeGray2021a)[@sarkozyMutationalLandscapeGray2021a]|| |
| 149 | 149 | |[MPDZ](MPDZ)|2|[Reichel et al](papers/reichelFlowSortingExome2015a)[@reichelFlowSortingExome2015a]|[@morinMutationalStructuralAnalysis2013]| |
| 150 | 150 | |[MYB](MYB)|2|[Desch et al](papers/deschGenotypingCirculatingTumor2020)[@deschGenotypingCirculatingTumor2020]|[@reddyGeneticFunctionalDrivers2017]| |
| 151 | -|[MYC](MYC)|2|[Duns et al](papers/dunsCharacterizationDLBCLPMBL2021b)[@dunsCharacterizationDLBCLPMBL2021b]|[@pasqualucciHypermutationMultipleProtooncogenes2001a; @jalladesExomeSequencingIdentifies2017; @johnstonCmycHypermutationBurkitt1992]| |
|
| 151 | +|[MYC](MYC)|2|[Duns et al](papers/dunsCharacterizationDLBCLPMBL2021b)[@dunsCharacterizationDLBCLPMBL2021b]|[@pasqualucciHypermutationMultipleProtooncogenes2001a; @johnstonCmycHypermutationBurkitt1992; @jalladesExomeSequencingIdentifies2017]| |
|
| 152 | 152 | |[NCOR2](NCOR2)|2|[Sarkozy et al](papers/sarkozyMutationalLandscapeGray2021a)[@sarkozyMutationalLandscapeGray2021a]|[@schmitzBurkittLymphomaPathogenesis2012; @spinaGeneticsNodalMarginal2016b]| |
| 153 | 153 | |[NEK1](NEK1)|2|[Reichel et al](papers/reichelFlowSortingExome2015a)[@reichelFlowSortingExome2015a]|| |
| 154 | 154 | |[NFKB2](NFKB2)|2|[Mottok et al](papers/mottokIntegrativeGenomicAnalysis2019b)[@mottokIntegrativeGenomicAnalysis2019b]|[@reddyGeneticFunctionalDrivers2017]| |
| 155 | -|[NSD2](NSD2)|2||[@beaLandscapeSomaticMutations2013]| |
|
| 155 | +|[NSD2](NSD2)|2||[@zhangGeneticHeterogeneityDiffuse2013; @beaLandscapeSomaticMutations2013]| |
|
| 156 | 156 | |[NUP214](NUP214)|2|[Tiacci et al](papers/tiacciPervasiveMutationsJAKSTAT2018b)[@tiacciPervasiveMutationsJAKSTAT2018b]|| |
| 157 | 157 | |[OR13C2](OR13C2)|2|[Gomez et al](papers/gomezUltraDeepSequencingReveals2023)[@gomezUltraDeepSequencingReveals2023]|| |
| 158 | 158 | |[PCBP1](PCBP1)|2||[@schmitzBurkittLymphomaPathogenesis2012]| |
| 159 | -|[PCDH7](PCDH7)|2||| |
|
| 159 | +|[PCDH7](PCDH7)|2||[@zhangGeneticHeterogeneityDiffuse2013]| |
|
| 160 | 160 | |[PRUNE2](PRUNE2)|2|[Tiacci et al](papers/tiacciPervasiveMutationsJAKSTAT2018b)[@tiacciPervasiveMutationsJAKSTAT2018b]|| |
| 161 | 161 | |[RANBP2](RANBP2)|2|[Reichel et al](papers/reichelFlowSortingExome2015a)[@reichelFlowSortingExome2015a]|| |
| 162 | 162 | |[RBM38](RBM38)|2|[Wienand et al](papers/wienandGenomicAnalysesFlowsorted2019b)[@wienandGenomicAnalysesFlowsorted2019b]|| |
| 163 | 163 | |[RDH12](RDH12)|2||| |
| 164 | -|[RELN](RELN)|2|[Sarkozy et al](papers/sarkozyMutationalLandscapeGray2021a)[@sarkozyMutationalLandscapeGray2021a]|| |
|
| 164 | +|[RELN](RELN)|2|[Sarkozy et al](papers/sarkozyMutationalLandscapeGray2021a)[@sarkozyMutationalLandscapeGray2021a]|[@zhangGeneticHeterogeneityDiffuse2013]| |
|
| 165 | 165 | |[RFTN1](RFTN1)|2|[Duns et al](papers/dunsCharacterizationDLBCLPMBL2021b)[@dunsCharacterizationDLBCLPMBL2021b]|[@arthurGenomewideDiscoverySomatic2018]| |
| 166 | -|[RGS1](RGS1)|2|[Mottok et al](papers/mottokIntegrativeGenomicAnalysis2019b)[@mottokIntegrativeGenomicAnalysis2019b]|| |
|
| 166 | +|[RGS1](RGS1)|2|[Mottok et al](papers/mottokIntegrativeGenomicAnalysis2019b)[@mottokIntegrativeGenomicAnalysis2019b]|[@zhangGeneticHeterogeneityDiffuse2013]| |
|
| 167 | 167 | |[SCN9A](SCN9A)|2||| |
| 168 | 168 | |[SENP7](SENP7)|2|[Reichel et al](papers/reichelFlowSortingExome2015a)[@reichelFlowSortingExome2015a]|| |
| 169 | 169 | |[SETD5](SETD5)|2|[Tiacci et al](papers/tiacciPervasiveMutationsJAKSTAT2018b)[@tiacciPervasiveMutationsJAKSTAT2018b]|[@reddyGeneticFunctionalDrivers2017]| |
| ... | ... | @@ -175,11 +175,18 @@ link-citations: true |
| 175 | 175 | |[TBC1D15](TBC1D15)|2|[Reichel et al](papers/reichelFlowSortingExome2015a)[@reichelFlowSortingExome2015a]|| |
| 176 | 176 | |[TICRR](TICRR)|2|[Reichel et al](papers/reichelFlowSortingExome2015a)[@reichelFlowSortingExome2015a]|| |
| 177 | 177 | |[TNIP1](TNIP1)|2|[Tiacci et al](papers/tiacciPervasiveMutationsJAKSTAT2018b)[@tiacciPervasiveMutationsJAKSTAT2018b]|| |
| 178 | -|[TRIP11](TRIP11)|2|[Reichel et al](papers/reichelFlowSortingExome2015a)[@reichelFlowSortingExome2015a]|| |
|
| 178 | +|[TRIP11](TRIP11)|2|[Reichel et al](papers/reichelFlowSortingExome2015a)[@reichelFlowSortingExome2015a]|[@zhangGeneticHeterogeneityDiffuse2013]| |
|
| 179 | 179 | |[VMP1](VMP1)|2|[Mottok et al](papers/mottokIntegrativeGenomicAnalysis2019b)[@mottokIntegrativeGenomicAnalysis2019b]|| |
| 180 | 180 | |[WDR87](WDR87)|2|[Duns et al](papers/dunsCharacterizationDLBCLPMBL2021b)[@dunsCharacterizationDLBCLPMBL2021b]|| |
| 181 | 181 | |[ZCCHC11](ZCCHC11)|2|[Tiacci et al](papers/tiacciPervasiveMutationsJAKSTAT2018b)[@tiacciPervasiveMutationsJAKSTAT2018b]|| |
| 182 | 182 | |[ZNF217](ZNF217)|2|[Reichel et al](papers/reichelFlowSortingExome2015a)[@reichelFlowSortingExome2015a]|[@hubschmannMutationalMechanismsShaping2021b]| |
| 183 | 183 | |
| 184 | +## Tier 3 PMBL genes |
|
| 185 | + |
|
| 186 | +### *0 total* |
|
| 187 | + |
|
| 188 | +|Gene|Tier| First PMBL evidence | Other entities | |
|
| 189 | +|:-:|:-:|:--|:-| |
|
| 190 | + |
|
| 184 | 191 | |
| 185 | 192 | # References |