papers/albuquerqueEnhancingKnowledgeDiscovery2017.md
... ...
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1
+---
2
+title: ''
3
+bibliography: 'morinlab.bib'
4
+---
5
+
6
+# @albuquerqueEnhancingKnowledgeDiscovery2017a
7
+## Summary of novel genes
8
+
9
+|Entity| Tier 1 genes| Tier 2 genes|
10
+|:-:|:-:|:-:|
11
+|DLBCL|3|0|
12
+```mermaid
13
+---
14
+config:
15
+ sankey:
16
+ showValues: true
17
+ linkColor: target
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+ width: 600
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+ height: 300
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+ nodeAlignment: right
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+ prefix: '('
22
+ suffix: ' genes)'
23
+---
24
+sankey-beta
25
+This study, New Tier 1, 3
26
+New Tier 1, DLBCL Tier 1, 3
27
+This study, New Tier 2, 0
28
+New Tier 2, DLBCL Tier 2, 0
29
+All other DLBCL studies, DLBCL Tier 1, 125
30
+All other DLBCL studies, DLBCL Tier 2, 198
31
+```
32
+
33
+## Novel genes reported in this study
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+
35
+### Tier 1
36
+|New gene|DLBCL tier|
37
+|:-|:-:|
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+|[BTK](../BTK)|1 |
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+|[TET2](../TET2)|1 |
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+|[TMSB4X](../TMSB4X)|1 |
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+
42
+
43
+# Details
44
+
papers/jardinRecurrentMutationsExportin2016.md
... ...
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1
+---
2
+title: ''
3
+bibliography: 'morinlab.bib'
4
+---
5
+
6
+# @jardinRecurrentMutationsExportin2016a
7
+## Summary of novel genes
8
+
9
+|Entity| Tier 1 genes| Tier 2 genes|
10
+|:-:|:-:|:-:|
11
+|PMBL|1|0|
12
+```mermaid
13
+---
14
+config:
15
+ sankey:
16
+ showValues: true
17
+ linkColor: target
18
+ width: 600
19
+ height: 300
20
+ nodeAlignment: right
21
+ prefix: '('
22
+ suffix: ' genes)'
23
+---
24
+sankey-beta
25
+This study, New Tier 1, 1
26
+New Tier 1, PMBL Tier 1, 1
27
+This study, New Tier 2, 0
28
+New Tier 2, PMBL Tier 2, 0
29
+All other PMBL studies, PMBL Tier 1, 75
30
+All other PMBL studies, PMBL Tier 2, 82
31
+```
32
+
33
+## Novel genes reported in this study
34
+
35
+### Tier 1
36
+|New gene|PMBL tier|
37
+|:-|:-:|
38
+|[XPO1](../XPO1)|1 |
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+
40
+
41
+# Details
42
+
papers/mottokIntegrativeGenomicAnalysis2019.md
... ...
@@ -0,0 +1,66 @@
1
+---
2
+title: ''
3
+bibliography: 'morinlab.bib'
4
+---
5
+
6
+# @mottokIntegrativeGenomicAnalysis2019b
7
+## Summary of novel genes
8
+
9
+|Entity| Tier 1 genes| Tier 2 genes|
10
+|:-:|:-:|:-:|
11
+|PMBL|6|15|
12
+```mermaid
13
+---
14
+config:
15
+ sankey:
16
+ showValues: true
17
+ linkColor: target
18
+ width: 600
19
+ height: 300
20
+ nodeAlignment: right
21
+ prefix: '('
22
+ suffix: ' genes)'
23
+---
24
+sankey-beta
25
+This study, New Tier 1, 6
26
+New Tier 1, PMBL Tier 1, 6
27
+This study, New Tier 2, 15
28
+New Tier 2, PMBL Tier 2, 15
29
+All other PMBL studies, PMBL Tier 1, 70
30
+All other PMBL studies, PMBL Tier 2, 67
31
+```
32
+
33
+## Novel genes reported in this study
34
+
35
+### Tier 1
36
+|New gene|PMBL tier|
37
+|:-|:-:|
38
+|[CISH](../CISH)|1 |
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+|[DDX3X](../DDX3X)|1 |
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+|[EZH2](../EZH2)|1 |
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+|[IRF8](../IRF8)|1 |
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+|[JAK1](../JAK1)|1 |
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+|[MS4A1](../MS4A1)|1 |
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+
45
+### Tier 2
46
+|New gene|PMBL tier|
47
+|:-|:-:|
48
+|[CXCR5](../CXCR5)|2 |
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+|[EPHA7](../EPHA7)|2 |
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+|[GCSAM](../GCSAM)|2 |
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+|[HIST1H2BC](../HIST1H2BC)|2 |
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+|[HIST1H4E](../HIST1H4E)|2 |
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+|[HIST1H4J](../HIST1H4J)|2 |
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+|[IL13RA1](../IL13RA1)|2 |
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+|[IL1RAPL2](../IL1RAPL2)|2 |
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+|[IRF2BP2](../IRF2BP2)|2 |
57
+|[IRF4](../IRF4)|2 |
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+|[JUNB](../JUNB)|2 |
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+|[MAGEC2](../MAGEC2)|2 |
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+|[NFKB2](../NFKB2)|2 |
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+|[RGS1](../RGS1)|2 |
62
+|[VMP1](../VMP1)|2 |
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+
64
+
65
+# Details
66
+
papers/spinaGeneticsNodalMarginal2016.md
... ...
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1
+---
2
+title: ''
3
+bibliography: 'morinlab.bib'
4
+---
5
+
6
+# @spinaGeneticsNodalMarginal2016b
7
+## Summary of novel genes
8
+
9
+|Entity| Tier 1 genes| Tier 2 genes|
10
+|:-:|:-:|:-:|
11
+|MZL|8|23|
12
+```mermaid
13
+---
14
+config:
15
+ sankey:
16
+ showValues: true
17
+ linkColor: target
18
+ width: 600
19
+ height: 300
20
+ nodeAlignment: right
21
+ prefix: '('
22
+ suffix: ' genes)'
23
+---
24
+sankey-beta
25
+This study, New Tier 1, 8
26
+New Tier 1, MZL Tier 1, 8
27
+This study, New Tier 2, 23
28
+New Tier 2, MZL Tier 2, 23
29
+All other MZL studies, MZL Tier 1, 34
30
+All other MZL studies, MZL Tier 2, 51
31
+```
32
+
33
+## Novel genes reported in this study
34
+
35
+### Tier 1
36
+|New gene|MZL tier|
37
+|:-|:-:|
38
+|[BCL10](../BCL10)|1 |
39
+|[FAS](../FAS)|1 |
40
+|[FAT1](../FAT1)|1 |
41
+|[ID3](../ID3)|1 |
42
+|[NCOR2](../NCOR2)|1 |
43
+|[NOL9](../NOL9)|1 |
44
+|[PTPRD](../PTPRD)|1 |
45
+|[TNFRSF14](../TNFRSF14)|1 |
46
+
47
+### Tier 2
48
+|New gene|MZL tier|
49
+|:-|:-:|
50
+|[ABCA13](../ABCA13)|2 |
51
+|[ACTG1](../ACTG1)|2 |
52
+|[ADD2](../ADD2)|2 |
53
+|[AMN](../AMN)|2 |
54
+|[AOC2](../AOC2)|2 |
55
+|[C6orf103](../C6orf103)|2 |
56
+|[CDC42BPB](../CDC42BPB)|2 |
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+|[CDKN2A](../CDKN2A)|2 |
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+|[CLGN](../CLGN)|2 |
59
+|[CNKSR2](../CNKSR2)|2 |
60
+|[GPR98](../GPR98)|2 |
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+|[LRP1B](../LRP1B)|2 |
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+|[PACRG](../PACRG)|2 |
63
+|[PARK2](../PARK2)|2 |
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+|[PLXNB3](../PLXNB3)|2 |
65
+|[RCOR1](../RCOR1)|2 |
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+|[RPL1L](../RPL1L)|2 |
67
+|[SAMD5](../SAMD5)|2 |
68
+|[SCG3](../SCG3)|2 |
69
+|[STXBP5](../STXBP5)|2 |
70
+|[TAF1](../TAF1)|2 |
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+|[TCTN2](../TCTN2)|2 |
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+|[ZNF9](../ZNF9)|2 |
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+
74
+
75
+# Details
76
+
papers/yildizActivatingSTAT6Mutations2015.md
... ...
@@ -0,0 +1,43 @@
1
+---
2
+title: ''
3
+bibliography: 'morinlab.bib'
4
+---
5
+
6
+# @yildizActivatingSTAT6Mutations2015c
7
+## Summary of novel genes
8
+
9
+|Entity| Tier 1 genes| Tier 2 genes|
10
+|:-:|:-:|:-:|
11
+|DLBCL|1|0|
12
+|FL|1|0|
13
+```mermaid
14
+---
15
+config:
16
+ sankey:
17
+ showValues: true
18
+ linkColor: target
19
+ width: 600
20
+ height: 300
21
+ nodeAlignment: right
22
+ prefix: '('
23
+ suffix: ' genes)'
24
+---
25
+sankey-beta
26
+This study, New Tier 1, 1
27
+New Tier 1, DLBCL Tier 1, 1
28
+This study, New Tier 2, 0
29
+New Tier 2, DLBCL Tier 2, 0
30
+All other DLBCL studies, DLBCL Tier 1, 127
31
+All other DLBCL studies, DLBCL Tier 2, 198
32
+```
33
+
34
+## Novel genes reported in this study
35
+
36
+### Tier 1
37
+|New gene|DLBCL tier|FL tier|
38
+|:-|:-:|:-:|
39
+|[STAT6](../STAT6)|1 |1 |
40
+
41
+
42
+# Details
43
+