2c526a62ed1b26e72d9147754a58c21544122f76
papers/abateDistinctViralMutational2015a.md
| ... | ... | @@ -8,7 +8,7 @@ bibliography: 'morinlab.bib' |
| 8 | 8 | |
| 9 | 9 | |Entity| Tier 1 genes| Tier 2 genes| |
| 10 | 10 | |:-:|:-:|:-:| |
| 11 | -|BL||1| |
|
| 11 | +|BL|0|1| |
|
| 12 | 12 | ```mermaid |
| 13 | 13 | --- |
| 14 | 14 | config: |
| ... | ... | @@ -22,8 +22,8 @@ config: |
| 22 | 22 | suffix: ' genes)' |
| 23 | 23 | --- |
| 24 | 24 | sankey-beta |
| 25 | -This study, New Tier 1, |
|
| 26 | -New Tier 1, BL Tier 1, |
|
| 25 | +This study, New Tier 1, 0 |
|
| 26 | +New Tier 1, BL Tier 1, 0 |
|
| 27 | 27 | This study, New Tier 2, 1 |
| 28 | 28 | New Tier 2, BL Tier 2, 1 |
| 29 | 29 | All other BL studies, BL Tier 1, 29 |
papers/albuquerqueEnhancingKnowledgeDiscovery2017a.md
| ... | ... | @@ -8,7 +8,7 @@ bibliography: 'morinlab.bib' |
| 8 | 8 | |
| 9 | 9 | |Entity| Tier 1 genes| Tier 2 genes| |
| 10 | 10 | |:-:|:-:|:-:| |
| 11 | -|DLBCL|3|| |
|
| 11 | +|DLBCL|3|0| |
|
| 12 | 12 | ```mermaid |
| 13 | 13 | --- |
| 14 | 14 | config: |
| ... | ... | @@ -24,8 +24,8 @@ config: |
| 24 | 24 | sankey-beta |
| 25 | 25 | This study, New Tier 1, 3 |
| 26 | 26 | New Tier 1, DLBCL Tier 1, 3 |
| 27 | -This study, New Tier 2, |
|
| 28 | -New Tier 2, DLBCL Tier 2, |
|
| 27 | +This study, New Tier 2, 0 |
|
| 28 | +New Tier 2, DLBCL Tier 2, 0 |
|
| 29 | 29 | All other DLBCL studies, DLBCL Tier 1, 125 |
| 30 | 30 | All other DLBCL studies, DLBCL Tier 2, 198 |
| 31 | 31 | ``` |
papers/barariaCathepsinAlterationsInduce2020c.md
| ... | ... | @@ -8,7 +8,7 @@ bibliography: 'morinlab.bib' |
| 8 | 8 | |
| 9 | 9 | |Entity| Tier 1 genes| Tier 2 genes| |
| 10 | 10 | |:-:|:-:|:-:| |
| 11 | -|FL|1|| |
|
| 11 | +|FL|1|0| |
|
| 12 | 12 | ```mermaid |
| 13 | 13 | --- |
| 14 | 14 | config: |
| ... | ... | @@ -24,8 +24,8 @@ config: |
| 24 | 24 | sankey-beta |
| 25 | 25 | This study, New Tier 1, 1 |
| 26 | 26 | New Tier 1, FL Tier 1, 1 |
| 27 | -This study, New Tier 2, |
|
| 28 | -New Tier 2, FL Tier 2, |
|
| 27 | +This study, New Tier 2, 0 |
|
| 28 | +New Tier 2, FL Tier 2, 0 |
|
| 29 | 29 | All other FL studies, FL Tier 1, 65 |
| 30 | 30 | All other FL studies, FL Tier 2, 50 |
| 31 | 31 | ``` |
papers/bohleRoleEarlyBcell2013.md
| ... | ... | @@ -8,7 +8,7 @@ bibliography: 'morinlab.bib' |
| 8 | 8 | |
| 9 | 9 | |Entity| Tier 1 genes| Tier 2 genes| |
| 10 | 10 | |:-:|:-:|:-:| |
| 11 | -|DLBCL|1|| |
|
| 11 | +|DLBCL|1|0| |
|
| 12 | 12 | ```mermaid |
| 13 | 13 | --- |
| 14 | 14 | config: |
| ... | ... | @@ -24,8 +24,8 @@ config: |
| 24 | 24 | sankey-beta |
| 25 | 25 | This study, New Tier 1, 1 |
| 26 | 26 | New Tier 1, DLBCL Tier 1, 1 |
| 27 | -This study, New Tier 2, |
|
| 28 | -New Tier 2, DLBCL Tier 2, |
|
| 27 | +This study, New Tier 2, 0 |
|
| 28 | +New Tier 2, DLBCL Tier 2, 0 |
|
| 29 | 29 | All other DLBCL studies, DLBCL Tier 1, 127 |
| 30 | 30 | All other DLBCL studies, DLBCL Tier 2, 198 |
| 31 | 31 | ``` |
papers/braggioGenomicAnalysisMarginal2012.md
| ... | ... | @@ -8,7 +8,7 @@ bibliography: 'morinlab.bib' |
| 8 | 8 | |
| 9 | 9 | |Entity| Tier 1 genes| Tier 2 genes| |
| 10 | 10 | |:-:|:-:|:-:| |
| 11 | -|MZL|1|| |
|
| 11 | +|MZL|1|0| |
|
| 12 | 12 | ```mermaid |
| 13 | 13 | --- |
| 14 | 14 | config: |
| ... | ... | @@ -24,8 +24,8 @@ config: |
| 24 | 24 | sankey-beta |
| 25 | 25 | This study, New Tier 1, 1 |
| 26 | 26 | New Tier 1, MZL Tier 1, 1 |
| 27 | -This study, New Tier 2, |
|
| 28 | -New Tier 2, MZL Tier 2, |
|
| 27 | +This study, New Tier 2, 0 |
|
| 28 | +New Tier 2, MZL Tier 2, 0 |
|
| 29 | 29 | All other MZL studies, MZL Tier 1, 41 |
| 30 | 30 | All other MZL studies, MZL Tier 2, 74 |
| 31 | 31 | ``` |
papers/burkhardtClinicalRelevanceMolecular2022b.md
| ... | ... | @@ -8,7 +8,7 @@ bibliography: 'morinlab.bib' |
| 8 | 8 | |
| 9 | 9 | |Entity| Tier 1 genes| Tier 2 genes| |
| 10 | 10 | |:-:|:-:|:-:| |
| 11 | -|BL||25| |
|
| 11 | +|BL|0|25| |
|
| 12 | 12 | ```mermaid |
| 13 | 13 | --- |
| 14 | 14 | config: |
| ... | ... | @@ -22,8 +22,8 @@ config: |
| 22 | 22 | suffix: ' genes)' |
| 23 | 23 | --- |
| 24 | 24 | sankey-beta |
| 25 | -This study, New Tier 1, |
|
| 26 | -New Tier 1, BL Tier 1, |
|
| 25 | +This study, New Tier 1, 0 |
|
| 26 | +New Tier 1, BL Tier 1, 0 |
|
| 27 | 27 | This study, New Tier 2, 25 |
| 28 | 28 | New Tier 2, BL Tier 2, 25 |
| 29 | 29 | All other BL studies, BL Tier 1, 29 |
papers/cheungAcquiredTNFRSF14Mutations2010a.md
| ... | ... | @@ -8,8 +8,8 @@ bibliography: 'morinlab.bib' |
| 8 | 8 | |
| 9 | 9 | |Entity| Tier 1 genes| Tier 2 genes| |
| 10 | 10 | |:-:|:-:|:-:| |
| 11 | -|FL|1|| |
|
| 12 | -|DLBCL|1|| |
|
| 11 | +|FL|1|0| |
|
| 12 | +|DLBCL|1|0| |
|
| 13 | 13 | ```mermaid |
| 14 | 14 | --- |
| 15 | 15 | config: |
| ... | ... | @@ -24,11 +24,11 @@ config: |
| 24 | 24 | --- |
| 25 | 25 | sankey-beta |
| 26 | 26 | This study, New Tier 1, 1 |
| 27 | -New Tier 1, FL Tier 1, 1 |
|
| 28 | -This study, New Tier 2, |
|
| 29 | -New Tier 2, FL Tier 2, |
|
| 30 | -All other FL studies, FL Tier 1, 65 |
|
| 31 | -All other FL studies, FL Tier 2, 50 |
|
| 27 | +New Tier 1, DLBCL Tier 1, 1 |
|
| 28 | +This study, New Tier 2, 0 |
|
| 29 | +New Tier 2, DLBCL Tier 2, 0 |
|
| 30 | +All other DLBCL studies, DLBCL Tier 1, 127 |
|
| 31 | +All other DLBCL studies, DLBCL Tier 2, 198 |
|
| 32 | 32 | ``` |
| 33 | 33 | |
| 34 | 34 |
papers/compagnoMutationsMultipleGenes2009a.md
| ... | ... | @@ -8,7 +8,7 @@ bibliography: 'morinlab.bib' |
| 8 | 8 | |
| 9 | 9 | |Entity| Tier 1 genes| Tier 2 genes| |
| 10 | 10 | |:-:|:-:|:-:| |
| 11 | -|DLBCL|1|| |
|
| 11 | +|DLBCL|1|0| |
|
| 12 | 12 | ```mermaid |
| 13 | 13 | --- |
| 14 | 14 | config: |
| ... | ... | @@ -24,8 +24,8 @@ config: |
| 24 | 24 | sankey-beta |
| 25 | 25 | This study, New Tier 1, 1 |
| 26 | 26 | New Tier 1, DLBCL Tier 1, 1 |
| 27 | -This study, New Tier 2, |
|
| 28 | -New Tier 2, DLBCL Tier 2, |
|
| 27 | +This study, New Tier 2, 0 |
|
| 28 | +New Tier 2, DLBCL Tier 2, 0 |
|
| 29 | 29 | All other DLBCL studies, DLBCL Tier 1, 127 |
| 30 | 30 | All other DLBCL studies, DLBCL Tier 2, 198 |
| 31 | 31 | ``` |
papers/ganapathiGeneticLandscapeDural2016.md
| ... | ... | @@ -8,7 +8,7 @@ bibliography: 'morinlab.bib' |
| 8 | 8 | |
| 9 | 9 | |Entity| Tier 1 genes| Tier 2 genes| |
| 10 | 10 | |:-:|:-:|:-:| |
| 11 | -|MZL|1|| |
|
| 11 | +|MZL|1|0| |
|
| 12 | 12 | ```mermaid |
| 13 | 13 | --- |
| 14 | 14 | config: |
| ... | ... | @@ -24,8 +24,8 @@ config: |
| 24 | 24 | sankey-beta |
| 25 | 25 | This study, New Tier 1, 1 |
| 26 | 26 | New Tier 1, MZL Tier 1, 1 |
| 27 | -This study, New Tier 2, |
|
| 28 | -New Tier 2, MZL Tier 2, |
|
| 27 | +This study, New Tier 2, 0 |
|
| 28 | +New Tier 2, MZL Tier 2, 0 |
|
| 29 | 29 | All other MZL studies, MZL Tier 1, 41 |
| 30 | 30 | All other MZL studies, MZL Tier 2, 74 |
| 31 | 31 | ``` |
papers/gunawardanaRecurrentSomaticMutations2014c.md
| ... | ... | @@ -8,7 +8,7 @@ bibliography: 'morinlab.bib' |
| 8 | 8 | |
| 9 | 9 | |Entity| Tier 1 genes| Tier 2 genes| |
| 10 | 10 | |:-:|:-:|:-:| |
| 11 | -|PMBL|1|| |
|
| 11 | +|PMBL|1|0| |
|
| 12 | 12 | ```mermaid |
| 13 | 13 | --- |
| 14 | 14 | config: |
| ... | ... | @@ -24,8 +24,8 @@ config: |
| 24 | 24 | sankey-beta |
| 25 | 25 | This study, New Tier 1, 1 |
| 26 | 26 | New Tier 1, PMBL Tier 1, 1 |
| 27 | -This study, New Tier 2, |
|
| 28 | -New Tier 2, PMBL Tier 2, |
|
| 27 | +This study, New Tier 2, 0 |
|
| 28 | +New Tier 2, PMBL Tier 2, 0 |
|
| 29 | 29 | All other PMBL studies, PMBL Tier 1, 75 |
| 30 | 30 | All other PMBL studies, PMBL Tier 2, 82 |
| 31 | 31 | ``` |
papers/jardinRecurrentMutationsExportin2016a.md
| ... | ... | @@ -8,7 +8,7 @@ bibliography: 'morinlab.bib' |
| 8 | 8 | |
| 9 | 9 | |Entity| Tier 1 genes| Tier 2 genes| |
| 10 | 10 | |:-:|:-:|:-:| |
| 11 | -|PMBL|1|| |
|
| 11 | +|PMBL|1|0| |
|
| 12 | 12 | ```mermaid |
| 13 | 13 | --- |
| 14 | 14 | config: |
| ... | ... | @@ -24,8 +24,8 @@ config: |
| 24 | 24 | sankey-beta |
| 25 | 25 | This study, New Tier 1, 1 |
| 26 | 26 | New Tier 1, PMBL Tier 1, 1 |
| 27 | -This study, New Tier 2, |
|
| 28 | -New Tier 2, PMBL Tier 2, |
|
| 27 | +This study, New Tier 2, 0 |
|
| 28 | +New Tier 2, PMBL Tier 2, 0 |
|
| 29 | 29 | All other PMBL studies, PMBL Tier 1, 75 |
| 30 | 30 | All other PMBL studies, PMBL Tier 2, 82 |
| 31 | 31 | ``` |
papers/johnstonCmycHypermutationBurkitt1992.md
| ... | ... | @@ -8,7 +8,7 @@ bibliography: 'morinlab.bib' |
| 8 | 8 | |
| 9 | 9 | |Entity| Tier 1 genes| Tier 2 genes| |
| 10 | 10 | |:-:|:-:|:-:| |
| 11 | -|BL|1|| |
|
| 11 | +|BL|1|0| |
|
| 12 | 12 | ```mermaid |
| 13 | 13 | --- |
| 14 | 14 | config: |
| ... | ... | @@ -24,8 +24,8 @@ config: |
| 24 | 24 | sankey-beta |
| 25 | 25 | This study, New Tier 1, 1 |
| 26 | 26 | New Tier 1, BL Tier 1, 1 |
| 27 | -This study, New Tier 2, |
|
| 28 | -New Tier 2, BL Tier 2, |
|
| 27 | +This study, New Tier 2, 0 |
|
| 28 | +New Tier 2, BL Tier 2, 0 |
|
| 29 | 29 | All other BL studies, BL Tier 1, 28 |
| 30 | 30 | All other BL studies, BL Tier 2, 157 |
| 31 | 31 | ``` |
papers/khodabakhshiRecurrentTargetsAberrant2012.md
| ... | ... | @@ -8,7 +8,7 @@ bibliography: 'morinlab.bib' |
| 8 | 8 | |
| 9 | 9 | |Entity| Tier 1 genes| Tier 2 genes| |
| 10 | 10 | |:-:|:-:|:-:| |
| 11 | -|DLBCL|1|| |
|
| 11 | +|DLBCL|1|0| |
|
| 12 | 12 | ```mermaid |
| 13 | 13 | --- |
| 14 | 14 | config: |
| ... | ... | @@ -24,8 +24,8 @@ config: |
| 24 | 24 | sankey-beta |
| 25 | 25 | This study, New Tier 1, 1 |
| 26 | 26 | New Tier 1, DLBCL Tier 1, 1 |
| 27 | -This study, New Tier 2, |
|
| 28 | -New Tier 2, DLBCL Tier 2, |
|
| 27 | +This study, New Tier 2, 0 |
|
| 28 | +New Tier 2, DLBCL Tier 2, 0 |
|
| 29 | 29 | All other DLBCL studies, DLBCL Tier 1, 127 |
| 30 | 30 | All other DLBCL studies, DLBCL Tier 2, 198 |
| 31 | 31 | ``` |
papers/kwanhianMicroRNA142Mutated202012b.md
| ... | ... | @@ -8,7 +8,7 @@ bibliography: 'morinlab.bib' |
| 8 | 8 | |
| 9 | 9 | |Entity| Tier 1 genes| Tier 2 genes| |
| 10 | 10 | |:-:|:-:|:-:| |
| 11 | -|DLBCL||1| |
|
| 11 | +|DLBCL|0|1| |
|
| 12 | 12 | ```mermaid |
| 13 | 13 | --- |
| 14 | 14 | config: |
| ... | ... | @@ -22,8 +22,8 @@ config: |
| 22 | 22 | suffix: ' genes)' |
| 23 | 23 | --- |
| 24 | 24 | sankey-beta |
| 25 | -This study, New Tier 1, |
|
| 26 | -New Tier 1, DLBCL Tier 1, |
|
| 25 | +This study, New Tier 1, 0 |
|
| 26 | +New Tier 1, DLBCL Tier 1, 0 |
|
| 27 | 27 | This study, New Tier 2, 1 |
| 28 | 28 | New Tier 2, DLBCL Tier 2, 1 |
| 29 | 29 | All other DLBCL studies, DLBCL Tier 1, 128 |
papers/lakeMutationsNFKBIAEncoding2009.md
| ... | ... | @@ -8,7 +8,7 @@ bibliography: 'morinlab.bib' |
| 8 | 8 | |
| 9 | 9 | |Entity| Tier 1 genes| Tier 2 genes| |
| 10 | 10 | |:-:|:-:|:-:| |
| 11 | -|DLBCL|1|| |
|
| 11 | +|DLBCL|1|0| |
|
| 12 | 12 | ```mermaid |
| 13 | 13 | --- |
| 14 | 14 | config: |
| ... | ... | @@ -24,8 +24,8 @@ config: |
| 24 | 24 | sankey-beta |
| 25 | 25 | This study, New Tier 1, 1 |
| 26 | 26 | New Tier 1, DLBCL Tier 1, 1 |
| 27 | -This study, New Tier 2, |
|
| 28 | -New Tier 2, DLBCL Tier 2, |
|
| 27 | +This study, New Tier 2, 0 |
|
| 28 | +New Tier 2, DLBCL Tier 2, 0 |
|
| 29 | 29 | All other DLBCL studies, DLBCL Tier 1, 127 |
| 30 | 30 | All other DLBCL studies, DLBCL Tier 2, 198 |
| 31 | 31 | ``` |
papers/lenzOncogenicCARD11Mutations2008.md
| ... | ... | @@ -8,7 +8,7 @@ bibliography: 'morinlab.bib' |
| 8 | 8 | |
| 9 | 9 | |Entity| Tier 1 genes| Tier 2 genes| |
| 10 | 10 | |:-:|:-:|:-:| |
| 11 | -|DLBCL|1|| |
|
| 11 | +|DLBCL|1|0| |
|
| 12 | 12 | ```mermaid |
| 13 | 13 | --- |
| 14 | 14 | config: |
| ... | ... | @@ -24,8 +24,8 @@ config: |
| 24 | 24 | sankey-beta |
| 25 | 25 | This study, New Tier 1, 1 |
| 26 | 26 | New Tier 1, DLBCL Tier 1, 1 |
| 27 | -This study, New Tier 2, |
|
| 28 | -New Tier 2, DLBCL Tier 2, |
|
| 27 | +This study, New Tier 2, 0 |
|
| 28 | +New Tier 2, DLBCL Tier 2, 0 |
|
| 29 | 29 | All other DLBCL studies, DLBCL Tier 1, 127 |
| 30 | 30 | All other DLBCL studies, DLBCL Tier 2, 198 |
| 31 | 31 | ``` |
papers/louissaintPediatrictypeNodalFollicular2016a.md
| ... | ... | @@ -8,7 +8,7 @@ bibliography: 'morinlab.bib' |
| 8 | 8 | |
| 9 | 9 | |Entity| Tier 1 genes| Tier 2 genes| |
| 10 | 10 | |:-:|:-:|:-:| |
| 11 | -|FL|1|| |
|
| 11 | +|FL|1|0| |
|
| 12 | 12 | ```mermaid |
| 13 | 13 | --- |
| 14 | 14 | config: |
| ... | ... | @@ -24,8 +24,8 @@ config: |
| 24 | 24 | sankey-beta |
| 25 | 25 | This study, New Tier 1, 1 |
| 26 | 26 | New Tier 1, FL Tier 1, 1 |
| 27 | -This study, New Tier 2, |
|
| 28 | -New Tier 2, FL Tier 2, |
|
| 27 | +This study, New Tier 2, 0 |
|
| 28 | +New Tier 2, FL Tier 2, 0 |
|
| 29 | 29 | All other FL studies, FL Tier 1, 65 |
| 30 | 30 | All other FL studies, FL Tier 2, 50 |
| 31 | 31 | ``` |
papers/mansouriFrequentNFKBIEDeletions2016.md
| ... | ... | @@ -8,7 +8,7 @@ bibliography: 'morinlab.bib' |
| 8 | 8 | |
| 9 | 9 | |Entity| Tier 1 genes| Tier 2 genes| |
| 10 | 10 | |:-:|:-:|:-:| |
| 11 | -|PMBL|1|| |
|
| 11 | +|PMBL|1|0| |
|
| 12 | 12 | ```mermaid |
| 13 | 13 | --- |
| 14 | 14 | config: |
| ... | ... | @@ -24,8 +24,8 @@ config: |
| 24 | 24 | sankey-beta |
| 25 | 25 | This study, New Tier 1, 1 |
| 26 | 26 | New Tier 1, PMBL Tier 1, 1 |
| 27 | -This study, New Tier 2, |
|
| 28 | -New Tier 2, PMBL Tier 2, |
|
| 27 | +This study, New Tier 2, 0 |
|
| 28 | +New Tier 2, PMBL Tier 2, 0 |
|
| 29 | 29 | All other PMBL studies, PMBL Tier 1, 75 |
| 30 | 30 | All other PMBL studies, PMBL Tier 2, 82 |
| 31 | 31 | ``` |
papers/mareschalWholeExomeSequencing2016.md
| ... | ... | @@ -8,7 +8,7 @@ bibliography: 'morinlab.bib' |
| 8 | 8 | |
| 9 | 9 | |Entity| Tier 1 genes| Tier 2 genes| |
| 10 | 10 | |:-:|:-:|:-:| |
| 11 | -|DLBCL|2|| |
|
| 11 | +|DLBCL|2|0| |
|
| 12 | 12 | ```mermaid |
| 13 | 13 | --- |
| 14 | 14 | config: |
| ... | ... | @@ -24,8 +24,8 @@ config: |
| 24 | 24 | sankey-beta |
| 25 | 25 | This study, New Tier 1, 2 |
| 26 | 26 | New Tier 1, DLBCL Tier 1, 2 |
| 27 | -This study, New Tier 2, |
|
| 28 | -New Tier 2, DLBCL Tier 2, |
|
| 27 | +This study, New Tier 2, 0 |
|
| 28 | +New Tier 2, DLBCL Tier 2, 0 |
|
| 29 | 29 | All other DLBCL studies, DLBCL Tier 1, 126 |
| 30 | 30 | All other DLBCL studies, DLBCL Tier 2, 198 |
| 31 | 31 | ``` |
papers/morinFrequentMutationHistonemodifying2011.md
| ... | ... | @@ -8,8 +8,8 @@ bibliography: 'morinlab.bib' |
| 8 | 8 | |
| 9 | 9 | |Entity| Tier 1 genes| Tier 2 genes| |
| 10 | 10 | |:-:|:-:|:-:| |
| 11 | -|FL|19|4| |
|
| 12 | 11 | |DLBCL|27|1| |
| 12 | +|FL|19|4| |
|
| 13 | 13 | ```mermaid |
| 14 | 14 | --- |
| 15 | 15 | config: |
| ... | ... | @@ -34,22 +34,22 @@ All other DLBCL studies, DLBCL Tier 2, 197 |
| 34 | 34 | |
| 35 | 35 | ## Novel genes reported in this study |
| 36 | 36 | |
| 37 | -|New gene|FL tier|DLBCL tier| |
|
| 37 | +|New gene|DLBCL tier|FL tier| |
|
| 38 | 38 | |:-|:-:|:-:| |
| 39 | 39 | |[B2M](B2M)|1 |1 | |
| 40 | -|[BCL10](BCL10)|2 |1 | |
|
| 40 | +|[BCL10](BCL10)|1 |2 | |
|
| 41 | 41 | |[BCL2](BCL2)|1 |1 | |
| 42 | 42 | |[BCL6](BCL6)|1 |1 | |
| 43 | 43 | |[BTG1](BTG1)|1 |1 | |
| 44 | 44 | |[BTG2](BTG2)|1 |1 | |
| 45 | 45 | |[CARD11](CARD11)|1 |1 | |
| 46 | 46 | |[CCND3](CCND3)|1 |1 | |
| 47 | -|[CD274](CD274)| |2 | |
|
| 48 | -|[CD58](CD58)| |1 | |
|
| 49 | -|[CD70](CD70)|2 |1 | |
|
| 50 | -|[CD79B](CD79B)|2 |1 | |
|
| 51 | -|[CIITA](CIITA)| |1 | |
|
| 52 | -|[ETS1](ETS1)| |1 | |
|
| 47 | +|[CD274](CD274)|2 | | |
|
| 48 | +|[CD58](CD58)|1 | | |
|
| 49 | +|[CD70](CD70)|1 |2 | |
|
| 50 | +|[CD79B](CD79B)|1 |2 | |
|
| 51 | +|[CIITA](CIITA)|1 | | |
|
| 52 | +|[ETS1](ETS1)|1 | | |
|
| 53 | 53 | |[FOXO1](FOXO1)|1 |1 | |
| 54 | 54 | |[GNA13](GNA13)|1 |1 | |
| 55 | 55 | |[HIST1H1C](HIST1H1C)|1 |1 | |
| ... | ... | @@ -61,9 +61,9 @@ All other DLBCL studies, DLBCL Tier 2, 197 |
| 61 | 61 | |[S1PR2](S1PR2)|1 |1 | |
| 62 | 62 | |[SGK1](SGK1)|1 |1 | |
| 63 | 63 | |[SOCS1](SOCS1)|1 |1 | |
| 64 | -|[TMEM30A](TMEM30A)|2 |1 | |
|
| 64 | +|[TMEM30A](TMEM30A)|1 |2 | |
|
| 65 | 65 | |[TP53](TP53)|1 |1 | |
| 66 | -|[ZFP36L1](ZFP36L1)| |1 | |
|
| 66 | +|[ZFP36L1](ZFP36L1)|1 | | |
|
| 67 | 67 | |
| 68 | 68 | # Details |
| 69 | 69 |
papers/morinGeneticLandscapesRelapsed2016.md
| ... | ... | @@ -8,7 +8,7 @@ bibliography: 'morinlab.bib' |
| 8 | 8 | |
| 9 | 9 | |Entity| Tier 1 genes| Tier 2 genes| |
| 10 | 10 | |:-:|:-:|:-:| |
| 11 | -|DLBCL|2|| |
|
| 11 | +|DLBCL|2|0| |
|
| 12 | 12 | ```mermaid |
| 13 | 13 | --- |
| 14 | 14 | config: |
| ... | ... | @@ -24,8 +24,8 @@ config: |
| 24 | 24 | sankey-beta |
| 25 | 25 | This study, New Tier 1, 2 |
| 26 | 26 | New Tier 1, DLBCL Tier 1, 2 |
| 27 | -This study, New Tier 2, |
|
| 28 | -New Tier 2, DLBCL Tier 2, |
|
| 27 | +This study, New Tier 2, 0 |
|
| 28 | +New Tier 2, DLBCL Tier 2, 0 |
|
| 29 | 29 | All other DLBCL studies, DLBCL Tier 1, 126 |
| 30 | 30 | All other DLBCL studies, DLBCL Tier 2, 198 |
| 31 | 31 | ``` |
papers/morinSomaticMutationsAltering2010a.md
| ... | ... | @@ -8,8 +8,8 @@ bibliography: 'morinlab.bib' |
| 8 | 8 | |
| 9 | 9 | |Entity| Tier 1 genes| Tier 2 genes| |
| 10 | 10 | |:-:|:-:|:-:| |
| 11 | -|DLBCL|1|| |
|
| 12 | -|FL|1|| |
|
| 11 | +|FL|1|0| |
|
| 12 | +|DLBCL|1|0| |
|
| 13 | 13 | ```mermaid |
| 14 | 14 | --- |
| 15 | 15 | config: |
| ... | ... | @@ -25,8 +25,8 @@ config: |
| 25 | 25 | sankey-beta |
| 26 | 26 | This study, New Tier 1, 1 |
| 27 | 27 | New Tier 1, DLBCL Tier 1, 1 |
| 28 | -This study, New Tier 2, |
|
| 29 | -New Tier 2, DLBCL Tier 2, |
|
| 28 | +This study, New Tier 2, 0 |
|
| 29 | +New Tier 2, DLBCL Tier 2, 0 |
|
| 30 | 30 | All other DLBCL studies, DLBCL Tier 1, 127 |
| 31 | 31 | All other DLBCL studies, DLBCL Tier 2, 198 |
| 32 | 32 | ``` |
| ... | ... | @@ -34,7 +34,7 @@ All other DLBCL studies, DLBCL Tier 2, 198 |
| 34 | 34 | |
| 35 | 35 | ## Novel genes reported in this study |
| 36 | 36 | |
| 37 | -|New gene|DLBCL tier|FL tier| |
|
| 37 | +|New gene|FL tier|DLBCL tier| |
|
| 38 | 38 | |:-|:-:|:-:| |
| 39 | 39 | |[EZH2](EZH2)|1 |1 | |
| 40 | 40 |
papers/mottokGenomicAlterationsCIITA2015b.md
| ... | ... | @@ -8,7 +8,7 @@ bibliography: 'morinlab.bib' |
| 8 | 8 | |
| 9 | 9 | |Entity| Tier 1 genes| Tier 2 genes| |
| 10 | 10 | |:-:|:-:|:-:| |
| 11 | -|PMBL|1|| |
|
| 11 | +|PMBL|1|0| |
|
| 12 | 12 | ```mermaid |
| 13 | 13 | --- |
| 14 | 14 | config: |
| ... | ... | @@ -24,8 +24,8 @@ config: |
| 24 | 24 | sankey-beta |
| 25 | 25 | This study, New Tier 1, 1 |
| 26 | 26 | New Tier 1, PMBL Tier 1, 1 |
| 27 | -This study, New Tier 2, |
|
| 28 | -New Tier 2, PMBL Tier 2, |
|
| 27 | +This study, New Tier 2, 0 |
|
| 28 | +New Tier 2, PMBL Tier 2, 0 |
|
| 29 | 29 | All other PMBL studies, PMBL Tier 1, 75 |
| 30 | 30 | All other PMBL studies, PMBL Tier 2, 82 |
| 31 | 31 | ``` |
papers/ngoOncogenicallyActiveMYD882011a.md
| ... | ... | @@ -8,7 +8,7 @@ bibliography: 'morinlab.bib' |
| 8 | 8 | |
| 9 | 9 | |Entity| Tier 1 genes| Tier 2 genes| |
| 10 | 10 | |:-:|:-:|:-:| |
| 11 | -|DLBCL|1|| |
|
| 11 | +|DLBCL|1|0| |
|
| 12 | 12 | ```mermaid |
| 13 | 13 | --- |
| 14 | 14 | config: |
| ... | ... | @@ -24,8 +24,8 @@ config: |
| 24 | 24 | sankey-beta |
| 25 | 25 | This study, New Tier 1, 1 |
| 26 | 26 | New Tier 1, DLBCL Tier 1, 1 |
| 27 | -This study, New Tier 2, |
|
| 28 | -New Tier 2, DLBCL Tier 2, |
|
| 27 | +This study, New Tier 2, 0 |
|
| 28 | +New Tier 2, DLBCL Tier 2, 0 |
|
| 29 | 29 | All other DLBCL studies, DLBCL Tier 1, 127 |
| 30 | 30 | All other DLBCL studies, DLBCL Tier 2, 198 |
| 31 | 31 | ``` |
papers/ohgamiSTAT3MutationsAre2014.md
| ... | ... | @@ -8,7 +8,7 @@ bibliography: 'morinlab.bib' |
| 8 | 8 | |
| 9 | 9 | |Entity| Tier 1 genes| Tier 2 genes| |
| 10 | 10 | |:-:|:-:|:-:| |
| 11 | -|DLBCL|1|| |
|
| 11 | +|DLBCL|1|0| |
|
| 12 | 12 | ```mermaid |
| 13 | 13 | --- |
| 14 | 14 | config: |
| ... | ... | @@ -24,8 +24,8 @@ config: |
| 24 | 24 | sankey-beta |
| 25 | 25 | This study, New Tier 1, 1 |
| 26 | 26 | New Tier 1, DLBCL Tier 1, 1 |
| 27 | -This study, New Tier 2, |
|
| 28 | -New Tier 2, DLBCL Tier 2, |
|
| 27 | +This study, New Tier 2, 0 |
|
| 28 | +New Tier 2, DLBCL Tier 2, 0 |
|
| 29 | 29 | All other DLBCL studies, DLBCL Tier 1, 127 |
| 30 | 30 | All other DLBCL studies, DLBCL Tier 2, 198 |
| 31 | 31 | ``` |
papers/okosunRecurrentMTORC1activatingRRAGC2016a.md
| ... | ... | @@ -8,8 +8,8 @@ bibliography: 'morinlab.bib' |
| 8 | 8 | |
| 9 | 9 | |Entity| Tier 1 genes| Tier 2 genes| |
| 10 | 10 | |:-:|:-:|:-:| |
| 11 | -|DLBCL|1|| |
|
| 12 | -|FL|3|| |
|
| 11 | +|FL|3|0| |
|
| 12 | +|DLBCL|1|0| |
|
| 13 | 13 | ```mermaid |
| 14 | 14 | --- |
| 15 | 15 | config: |
| ... | ... | @@ -25,8 +25,8 @@ config: |
| 25 | 25 | sankey-beta |
| 26 | 26 | This study, New Tier 1, 3 |
| 27 | 27 | New Tier 1, FL Tier 1, 3 |
| 28 | -This study, New Tier 2, |
|
| 29 | -New Tier 2, FL Tier 2, |
|
| 28 | +This study, New Tier 2, 0 |
|
| 29 | +New Tier 2, FL Tier 2, 0 |
|
| 30 | 30 | All other FL studies, FL Tier 1, 63 |
| 31 | 31 | All other FL studies, FL Tier 2, 50 |
| 32 | 32 | ``` |
| ... | ... | @@ -34,10 +34,10 @@ All other FL studies, FL Tier 2, 50 |
| 34 | 34 | |
| 35 | 35 | ## Novel genes reported in this study |
| 36 | 36 | |
| 37 | -|New gene|DLBCL tier|FL tier| |
|
| 37 | +|New gene|FL tier|DLBCL tier| |
|
| 38 | 38 | |:-|:-:|:-:| |
| 39 | -|[ATP6AP1](ATP6AP1)| |1 | |
|
| 40 | -|[ATP6V1B2](ATP6V1B2)| |1 | |
|
| 39 | +|[ATP6AP1](ATP6AP1)|1 | | |
|
| 40 | +|[ATP6V1B2](ATP6V1B2)|1 | | |
|
| 41 | 41 | |[RRAGC](RRAGC)|1 |1 | |
| 42 | 42 | |
| 43 | 43 | # Details |
papers/oricchioGeneticEpigeneticInactivation2017b.md
| ... | ... | @@ -8,7 +8,7 @@ bibliography: 'morinlab.bib' |
| 8 | 8 | |
| 9 | 9 | |Entity| Tier 1 genes| Tier 2 genes| |
| 10 | 10 | |:-:|:-:|:-:| |
| 11 | -|FL||1| |
|
| 11 | +|FL|0|1| |
|
| 12 | 12 | ```mermaid |
| 13 | 13 | --- |
| 14 | 14 | config: |
| ... | ... | @@ -22,8 +22,8 @@ config: |
| 22 | 22 | suffix: ' genes)' |
| 23 | 23 | --- |
| 24 | 24 | sankey-beta |
| 25 | -This study, New Tier 1, |
|
| 26 | -New Tier 1, FL Tier 1, |
|
| 25 | +This study, New Tier 1, 0 |
|
| 26 | +New Tier 1, FL Tier 1, 0 |
|
| 27 | 27 | This study, New Tier 2, 1 |
| 28 | 28 | New Tier 2, FL Tier 2, 1 |
| 29 | 29 | All other FL studies, FL Tier 1, 66 |
papers/ottoGeneticLesionsTRAF32012a.md
| ... | ... | @@ -8,7 +8,7 @@ bibliography: 'morinlab.bib' |
| 8 | 8 | |
| 9 | 9 | |Entity| Tier 1 genes| Tier 2 genes| |
| 10 | 10 | |:-:|:-:|:-:| |
| 11 | -|PMBL|2|| |
|
| 11 | +|PMBL|2|0| |
|
| 12 | 12 | ```mermaid |
| 13 | 13 | --- |
| 14 | 14 | config: |
| ... | ... | @@ -24,8 +24,8 @@ config: |
| 24 | 24 | sankey-beta |
| 25 | 25 | This study, New Tier 1, 2 |
| 26 | 26 | New Tier 1, PMBL Tier 1, 2 |
| 27 | -This study, New Tier 2, |
|
| 28 | -New Tier 2, PMBL Tier 2, |
|
| 27 | +This study, New Tier 2, 0 |
|
| 28 | +New Tier 2, PMBL Tier 2, 0 |
|
| 29 | 29 | All other PMBL studies, PMBL Tier 1, 74 |
| 30 | 30 | All other PMBL studies, PMBL Tier 2, 82 |
| 31 | 31 | ``` |
papers/parryWholeExomeSequencing2013.md
| ... | ... | @@ -8,7 +8,7 @@ bibliography: 'morinlab.bib' |
| 8 | 8 | |
| 9 | 9 | |Entity| Tier 1 genes| Tier 2 genes| |
| 10 | 10 | |:-:|:-:|:-:| |
| 11 | -|MZL||8| |
|
| 11 | +|MZL|0|8| |
|
| 12 | 12 | |DLBCL|3|1| |
| 13 | 13 | ```mermaid |
| 14 | 14 | --- |
| ... | ... | @@ -23,8 +23,8 @@ config: |
| 23 | 23 | suffix: ' genes)' |
| 24 | 24 | --- |
| 25 | 25 | sankey-beta |
| 26 | -This study, New Tier 1, |
|
| 27 | -New Tier 1, MZL Tier 1, |
|
| 26 | +This study, New Tier 1, 0 |
|
| 27 | +New Tier 1, MZL Tier 1, 0 |
|
| 28 | 28 | This study, New Tier 2, 8 |
| 29 | 29 | New Tier 2, MZL Tier 2, 8 |
| 30 | 30 | All other MZL studies, MZL Tier 1, 42 |
papers/pasqualucciInactivatingMutationsAcetyltransferase2011a.md
| ... | ... | @@ -8,8 +8,8 @@ bibliography: 'morinlab.bib' |
| 8 | 8 | |
| 9 | 9 | |Entity| Tier 1 genes| Tier 2 genes| |
| 10 | 10 | |:-:|:-:|:-:| |
| 11 | -|FL|2|| |
|
| 12 | -|DLBCL|2|| |
|
| 11 | +|DLBCL|2|0| |
|
| 12 | +|FL|2|0| |
|
| 13 | 13 | ```mermaid |
| 14 | 14 | --- |
| 15 | 15 | config: |
| ... | ... | @@ -25,8 +25,8 @@ config: |
| 25 | 25 | sankey-beta |
| 26 | 26 | This study, New Tier 1, 2 |
| 27 | 27 | New Tier 1, FL Tier 1, 2 |
| 28 | -This study, New Tier 2, |
|
| 29 | -New Tier 2, FL Tier 2, |
|
| 28 | +This study, New Tier 2, 0 |
|
| 29 | +New Tier 2, FL Tier 2, 0 |
|
| 30 | 30 | All other FL studies, FL Tier 1, 64 |
| 31 | 31 | All other FL studies, FL Tier 2, 50 |
| 32 | 32 | ``` |
| ... | ... | @@ -34,7 +34,7 @@ All other FL studies, FL Tier 2, 50 |
| 34 | 34 | |
| 35 | 35 | ## Novel genes reported in this study |
| 36 | 36 | |
| 37 | -|New gene|FL tier|DLBCL tier| |
|
| 37 | +|New gene|DLBCL tier|FL tier| |
|
| 38 | 38 | |:-|:-:|:-:| |
| 39 | 39 | |[CREBBP](CREBBP)|1 |1 | |
| 40 | 40 | |[EP300](EP300)|1 |1 | |
papers/pasqualucciInactivationPRDM1BLIMP12006a.md
| ... | ... | @@ -8,7 +8,7 @@ bibliography: 'morinlab.bib' |
| 8 | 8 | |
| 9 | 9 | |Entity| Tier 1 genes| Tier 2 genes| |
| 10 | 10 | |:-:|:-:|:-:| |
| 11 | -|DLBCL|1|| |
|
| 11 | +|DLBCL|1|0| |
|
| 12 | 12 | ```mermaid |
| 13 | 13 | --- |
| 14 | 14 | config: |
| ... | ... | @@ -24,8 +24,8 @@ config: |
| 24 | 24 | sankey-beta |
| 25 | 25 | This study, New Tier 1, 1 |
| 26 | 26 | New Tier 1, DLBCL Tier 1, 1 |
| 27 | -This study, New Tier 2, |
|
| 28 | -New Tier 2, DLBCL Tier 2, |
|
| 27 | +This study, New Tier 2, 0 |
|
| 28 | +New Tier 2, DLBCL Tier 2, 0 |
|
| 29 | 29 | All other DLBCL studies, DLBCL Tier 1, 127 |
| 30 | 30 | All other DLBCL studies, DLBCL Tier 2, 198 |
| 31 | 31 | ``` |
papers/richterRecurrentMutationID32012a.md
| ... | ... | @@ -8,7 +8,7 @@ bibliography: 'morinlab.bib' |
| 8 | 8 | |
| 9 | 9 | |Entity| Tier 1 genes| Tier 2 genes| |
| 10 | 10 | |:-:|:-:|:-:| |
| 11 | -|BL|5|| |
|
| 11 | +|BL|5|0| |
|
| 12 | 12 | ```mermaid |
| 13 | 13 | --- |
| 14 | 14 | config: |
| ... | ... | @@ -24,8 +24,8 @@ config: |
| 24 | 24 | sankey-beta |
| 25 | 25 | This study, New Tier 1, 5 |
| 26 | 26 | New Tier 1, BL Tier 1, 5 |
| 27 | -This study, New Tier 2, |
|
| 28 | -New Tier 2, BL Tier 2, |
|
| 27 | +This study, New Tier 2, 0 |
|
| 28 | +New Tier 2, BL Tier 2, 0 |
|
| 29 | 29 | All other BL studies, BL Tier 1, 24 |
| 30 | 30 | All other BL studies, BL Tier 2, 157 |
| 31 | 31 | ``` |
papers/ritzRecurrentMutationsSTAT62009a.md
| ... | ... | @@ -8,7 +8,7 @@ bibliography: 'morinlab.bib' |
| 8 | 8 | |
| 9 | 9 | |Entity| Tier 1 genes| Tier 2 genes| |
| 10 | 10 | |:-:|:-:|:-:| |
| 11 | -|PMBL|1|| |
|
| 11 | +|PMBL|1|0| |
|
| 12 | 12 | ```mermaid |
| 13 | 13 | --- |
| 14 | 14 | config: |
| ... | ... | @@ -24,8 +24,8 @@ config: |
| 24 | 24 | sankey-beta |
| 25 | 25 | This study, New Tier 1, 1 |
| 26 | 26 | New Tier 1, PMBL Tier 1, 1 |
| 27 | -This study, New Tier 2, |
|
| 28 | -New Tier 2, PMBL Tier 2, |
|
| 27 | +This study, New Tier 2, 0 |
|
| 28 | +New Tier 2, PMBL Tier 2, 0 |
|
| 29 | 29 | All other PMBL studies, PMBL Tier 1, 75 |
| 30 | 30 | All other PMBL studies, PMBL Tier 2, 82 |
| 31 | 31 | ``` |
papers/rossiCodingGenomeSplenic2012c.md
| ... | ... | @@ -8,8 +8,8 @@ bibliography: 'morinlab.bib' |
| 8 | 8 | |
| 9 | 9 | |Entity| Tier 1 genes| Tier 2 genes| |
| 10 | 10 | |:-:|:-:|:-:| |
| 11 | -|DLBCL|12|2| |
|
| 12 | 11 | |MZL|10|11| |
| 12 | +|DLBCL|12|2| |
|
| 13 | 13 | ```mermaid |
| 14 | 14 | --- |
| 15 | 15 | config: |
| ... | ... | @@ -34,28 +34,28 @@ All other MZL studies, MZL Tier 2, 63 |
| 34 | 34 | |
| 35 | 35 | ## Novel genes reported in this study |
| 36 | 36 | |
| 37 | -|New gene|DLBCL tier|MZL tier| |
|
| 37 | +|New gene|MZL tier|DLBCL tier| |
|
| 38 | 38 | |:-|:-:|:-:| |
| 39 | 39 | |[ARID1A](ARID1A)|1 |1 | |
| 40 | -|[CD79A](CD79A)| |2 | |
|
| 40 | +|[CD79A](CD79A)|2 | | |
|
| 41 | 41 | |[DTX1](DTX1)|1 |1 | |
| 42 | -|[EGR1](EGR1)| |2 | |
|
| 43 | -|[EGR2](EGR2)| |2 | |
|
| 42 | +|[EGR1](EGR1)|2 | | |
|
| 43 | +|[EGR2](EGR2)|2 | | |
|
| 44 | 44 | |[EP300](EP300)|1 |1 | |
| 45 | -|[GPS2](GPS2)| |2 | |
|
| 45 | +|[GPS2](GPS2)|2 | | |
|
| 46 | 46 | |[HIST1H2AG](HIST1H2AG)|2 |2 | |
| 47 | -|[HIST1H2BK](HIST1H2BK)|1 |2 | |
|
| 47 | +|[HIST1H2BK](HIST1H2BK)|2 |1 | |
|
| 48 | 48 | |[KMT2D](KMT2D)|1 |1 | |
| 49 | -|[MCRS1](MCRS1)| |2 | |
|
| 50 | -|[MSL2](MSL2)| |2 | |
|
| 49 | +|[MCRS1](MCRS1)|2 | | |
|
| 50 | +|[MSL2](MSL2)|2 | | |
|
| 51 | 51 | |[NOTCH1](NOTCH1)|1 |1 | |
| 52 | 52 | |[NOTCH2](NOTCH2)|1 |1 | |
| 53 | 53 | |[SIN3A](SIN3A)|1 |1 | |
| 54 | 54 | |[SPEN](SPEN)|1 |1 | |
| 55 | -|[SWAP70](SWAP70)| |2 | |
|
| 55 | +|[SWAP70](SWAP70)|2 | | |
|
| 56 | 56 | |[TBL1XR1](TBL1XR1)|1 |1 | |
| 57 | 57 | |[TP53](TP53)|1 |1 | |
| 58 | -|[TRRAP](TRRAP)|1 |2 | |
|
| 58 | +|[TRRAP](TRRAP)|2 |1 | |
|
| 59 | 59 | |[WAC](WAC)|2 |2 | |
| 60 | 60 | |
| 61 | 61 | # Details |
papers/rushtonGeneticEvolutionaryPatterns2020.md
| ... | ... | @@ -8,7 +8,7 @@ bibliography: 'morinlab.bib' |
| 8 | 8 | |
| 9 | 9 | |Entity| Tier 1 genes| Tier 2 genes| |
| 10 | 10 | |:-:|:-:|:-:| |
| 11 | -|DLBCL|1|| |
|
| 11 | +|DLBCL|1|0| |
|
| 12 | 12 | ```mermaid |
| 13 | 13 | --- |
| 14 | 14 | config: |
| ... | ... | @@ -24,8 +24,8 @@ config: |
| 24 | 24 | sankey-beta |
| 25 | 25 | This study, New Tier 1, 1 |
| 26 | 26 | New Tier 1, DLBCL Tier 1, 1 |
| 27 | -This study, New Tier 2, |
|
| 28 | -New Tier 2, DLBCL Tier 2, |
|
| 27 | +This study, New Tier 2, 0 |
|
| 28 | +New Tier 2, DLBCL Tier 2, 0 |
|
| 29 | 29 | All other DLBCL studies, DLBCL Tier 1, 127 |
| 30 | 30 | All other DLBCL studies, DLBCL Tier 2, 198 |
| 31 | 31 | ``` |
papers/schmitzTNFAIP3A20Tumor2009a.md
| ... | ... | @@ -8,7 +8,7 @@ bibliography: 'morinlab.bib' |
| 8 | 8 | |
| 9 | 9 | |Entity| Tier 1 genes| Tier 2 genes| |
| 10 | 10 | |:-:|:-:|:-:| |
| 11 | -|PMBL|1|| |
|
| 11 | +|PMBL|1|0| |
|
| 12 | 12 | ```mermaid |
| 13 | 13 | --- |
| 14 | 14 | config: |
| ... | ... | @@ -24,8 +24,8 @@ config: |
| 24 | 24 | sankey-beta |
| 25 | 25 | This study, New Tier 1, 1 |
| 26 | 26 | New Tier 1, PMBL Tier 1, 1 |
| 27 | -This study, New Tier 2, |
|
| 28 | -New Tier 2, PMBL Tier 2, |
|
| 27 | +This study, New Tier 2, 0 |
|
| 28 | +New Tier 2, PMBL Tier 2, 0 |
|
| 29 | 29 | All other PMBL studies, PMBL Tier 1, 75 |
| 30 | 30 | All other PMBL studies, PMBL Tier 2, 82 |
| 31 | 31 | ``` |
papers/schneiderAlterationsCD58Gene2015a.md
| ... | ... | @@ -8,7 +8,7 @@ bibliography: 'morinlab.bib' |
| 8 | 8 | |
| 9 | 9 | |Entity| Tier 1 genes| Tier 2 genes| |
| 10 | 10 | |:-:|:-:|:-:| |
| 11 | -|PMBL|1|| |
|
| 11 | +|PMBL|1|0| |
|
| 12 | 12 | ```mermaid |
| 13 | 13 | --- |
| 14 | 14 | config: |
| ... | ... | @@ -24,8 +24,8 @@ config: |
| 24 | 24 | sankey-beta |
| 25 | 25 | This study, New Tier 1, 1 |
| 26 | 26 | New Tier 1, PMBL Tier 1, 1 |
| 27 | -This study, New Tier 2, |
|
| 28 | -New Tier 2, PMBL Tier 2, |
|
| 27 | +This study, New Tier 2, 0 |
|
| 28 | +New Tier 2, PMBL Tier 2, 0 |
|
| 29 | 29 | All other PMBL studies, PMBL Tier 1, 75 |
| 30 | 30 | All other PMBL studies, PMBL Tier 2, 82 |
| 31 | 31 | ``` |
papers/schollMutationsRegionFAS2007.md
| ... | ... | @@ -8,7 +8,7 @@ bibliography: 'morinlab.bib' |
| 8 | 8 | |
| 9 | 9 | |Entity| Tier 1 genes| Tier 2 genes| |
| 10 | 10 | |:-:|:-:|:-:| |
| 11 | -|DLBCL|1|| |
|
| 11 | +|DLBCL|1|0| |
|
| 12 | 12 | ```mermaid |
| 13 | 13 | --- |
| 14 | 14 | config: |
| ... | ... | @@ -24,8 +24,8 @@ config: |
| 24 | 24 | sankey-beta |
| 25 | 25 | This study, New Tier 1, 1 |
| 26 | 26 | New Tier 1, DLBCL Tier 1, 1 |
| 27 | -This study, New Tier 2, |
|
| 28 | -New Tier 2, DLBCL Tier 2, |
|
| 27 | +This study, New Tier 2, 0 |
|
| 28 | +New Tier 2, DLBCL Tier 2, 0 |
|
| 29 | 29 | All other DLBCL studies, DLBCL Tier 1, 127 |
| 30 | 30 | All other DLBCL studies, DLBCL Tier 2, 198 |
| 31 | 31 | ``` |
papers/shinBRAFV600EMAP2K12015.md
| ... | ... | @@ -8,7 +8,7 @@ bibliography: 'morinlab.bib' |
| 8 | 8 | |
| 9 | 9 | |Entity| Tier 1 genes| Tier 2 genes| |
| 10 | 10 | |:-:|:-:|:-:| |
| 11 | -|DLBCL||1| |
|
| 11 | +|DLBCL|0|1| |
|
| 12 | 12 | ```mermaid |
| 13 | 13 | --- |
| 14 | 14 | config: |
| ... | ... | @@ -22,8 +22,8 @@ config: |
| 22 | 22 | suffix: ' genes)' |
| 23 | 23 | --- |
| 24 | 24 | sankey-beta |
| 25 | -This study, New Tier 1, |
|
| 26 | -New Tier 1, DLBCL Tier 1, |
|
| 25 | +This study, New Tier 1, 0 |
|
| 26 | +New Tier 1, DLBCL Tier 1, 0 |
|
| 27 | 27 | This study, New Tier 2, 1 |
| 28 | 28 | New Tier 2, DLBCL Tier 2, 1 |
| 29 | 29 | All other DLBCL studies, DLBCL Tier 1, 128 |
papers/tanakaFrequentIncidenceSomatic1992.md
| ... | ... | @@ -8,7 +8,7 @@ bibliography: 'morinlab.bib' |
| 8 | 8 | |
| 9 | 9 | |Entity| Tier 1 genes| Tier 2 genes| |
| 10 | 10 | |:-:|:-:|:-:| |
| 11 | -|DLBCL|1|| |
|
| 11 | +|DLBCL|1|0| |
|
| 12 | 12 | ```mermaid |
| 13 | 13 | --- |
| 14 | 14 | config: |
| ... | ... | @@ -24,8 +24,8 @@ config: |
| 24 | 24 | sankey-beta |
| 25 | 25 | This study, New Tier 1, 1 |
| 26 | 26 | New Tier 1, DLBCL Tier 1, 1 |
| 27 | -This study, New Tier 2, |
|
| 28 | -New Tier 2, DLBCL Tier 2, |
|
| 27 | +This study, New Tier 2, 0 |
|
| 28 | +New Tier 2, DLBCL Tier 2, 0 |
|
| 29 | 29 | All other DLBCL studies, DLBCL Tier 1, 127 |
| 30 | 30 | All other DLBCL studies, DLBCL Tier 2, 198 |
| 31 | 31 | ``` |
papers/tiacciBRAFMutationsHairycell2011a.md
| ... | ... | @@ -8,7 +8,7 @@ bibliography: 'morinlab.bib' |
| 8 | 8 | |
| 9 | 9 | |Entity| Tier 1 genes| Tier 2 genes| |
| 10 | 10 | |:-:|:-:|:-:| |
| 11 | -|DLBCL|1|| |
|
| 11 | +|DLBCL|1|0| |
|
| 12 | 12 | ```mermaid |
| 13 | 13 | --- |
| 14 | 14 | config: |
| ... | ... | @@ -24,8 +24,8 @@ config: |
| 24 | 24 | sankey-beta |
| 25 | 25 | This study, New Tier 1, 1 |
| 26 | 26 | New Tier 1, DLBCL Tier 1, 1 |
| 27 | -This study, New Tier 2, |
|
| 28 | -New Tier 2, DLBCL Tier 2, |
|
| 27 | +This study, New Tier 2, 0 |
|
| 28 | +New Tier 2, DLBCL Tier 2, 0 |
|
| 29 | 29 | All other DLBCL studies, DLBCL Tier 1, 127 |
| 30 | 30 | All other DLBCL studies, DLBCL Tier 2, 198 |
| 31 | 31 | ``` |
papers/troenNOTCH2MutationsMarginal2008.md
| ... | ... | @@ -8,7 +8,7 @@ bibliography: 'morinlab.bib' |
| 8 | 8 | |
| 9 | 9 | |Entity| Tier 1 genes| Tier 2 genes| |
| 10 | 10 | |:-:|:-:|:-:| |
| 11 | -|DLBCL|1|| |
|
| 11 | +|DLBCL|1|0| |
|
| 12 | 12 | ```mermaid |
| 13 | 13 | --- |
| 14 | 14 | config: |
| ... | ... | @@ -24,8 +24,8 @@ config: |
| 24 | 24 | sankey-beta |
| 25 | 25 | This study, New Tier 1, 1 |
| 26 | 26 | New Tier 1, DLBCL Tier 1, 1 |
| 27 | -This study, New Tier 2, |
|
| 28 | -New Tier 2, DLBCL Tier 2, |
|
| 27 | +This study, New Tier 2, 0 |
|
| 28 | +New Tier 2, DLBCL Tier 2, 0 |
|
| 29 | 29 | All other DLBCL studies, DLBCL Tier 1, 127 |
| 30 | 30 | All other DLBCL studies, DLBCL Tier 2, 198 |
| 31 | 31 | ``` |
papers/vandenbrandRecurrentMutationsGenes2017.md
| ... | ... | @@ -8,7 +8,7 @@ bibliography: 'morinlab.bib' |
| 8 | 8 | |
| 9 | 9 | |Entity| Tier 1 genes| Tier 2 genes| |
| 10 | 10 | |:-:|:-:|:-:| |
| 11 | -|MZL||2| |
|
| 11 | +|MZL|0|2| |
|
| 12 | 12 | ```mermaid |
| 13 | 13 | --- |
| 14 | 14 | config: |
| ... | ... | @@ -22,8 +22,8 @@ config: |
| 22 | 22 | suffix: ' genes)' |
| 23 | 23 | --- |
| 24 | 24 | sankey-beta |
| 25 | -This study, New Tier 1, |
|
| 26 | -New Tier 1, MZL Tier 1, |
|
| 25 | +This study, New Tier 1, 0 |
|
| 26 | +New Tier 1, MZL Tier 1, 0 |
|
| 27 | 27 | This study, New Tier 2, 2 |
| 28 | 28 | New Tier 2, MZL Tier 2, 2 |
| 29 | 29 | All other MZL studies, MZL Tier 1, 42 |
papers/viganoSomaticIL4RMutations2018b.md
| ... | ... | @@ -8,7 +8,7 @@ bibliography: 'morinlab.bib' |
| 8 | 8 | |
| 9 | 9 | |Entity| Tier 1 genes| Tier 2 genes| |
| 10 | 10 | |:-:|:-:|:-:| |
| 11 | -|PMBL|1|| |
|
| 11 | +|PMBL|1|0| |
|
| 12 | 12 | ```mermaid |
| 13 | 13 | --- |
| 14 | 14 | config: |
| ... | ... | @@ -24,8 +24,8 @@ config: |
| 24 | 24 | sankey-beta |
| 25 | 25 | This study, New Tier 1, 1 |
| 26 | 26 | New Tier 1, PMBL Tier 1, 1 |
| 27 | -This study, New Tier 2, |
|
| 28 | -New Tier 2, PMBL Tier 2, |
|
| 27 | +This study, New Tier 2, 0 |
|
| 28 | +New Tier 2, PMBL Tier 2, 0 |
|
| 29 | 29 | All other PMBL studies, PMBL Tier 1, 75 |
| 30 | 30 | All other PMBL studies, PMBL Tier 2, 82 |
| 31 | 31 | ``` |
papers/wildaInactivationARFMDM2p53Pathway2004.md
| ... | ... | @@ -8,7 +8,7 @@ bibliography: 'morinlab.bib' |
| 8 | 8 | |
| 9 | 9 | |Entity| Tier 1 genes| Tier 2 genes| |
| 10 | 10 | |:-:|:-:|:-:| |
| 11 | -|BL|1|| |
|
| 11 | +|BL|1|0| |
|
| 12 | 12 | ```mermaid |
| 13 | 13 | --- |
| 14 | 14 | config: |
| ... | ... | @@ -24,8 +24,8 @@ config: |
| 24 | 24 | sankey-beta |
| 25 | 25 | This study, New Tier 1, 1 |
| 26 | 26 | New Tier 1, BL Tier 1, 1 |
| 27 | -This study, New Tier 2, |
|
| 28 | -New Tier 2, BL Tier 2, |
|
| 27 | +This study, New Tier 2, 0 |
|
| 28 | +New Tier 2, BL Tier 2, 0 |
|
| 29 | 29 | All other BL studies, BL Tier 1, 28 |
| 30 | 30 | All other BL studies, BL Tier 2, 157 |
| 31 | 31 | ``` |
papers/wuGeneticHeterogeneityPrimary2016.md
| ... | ... | @@ -8,7 +8,7 @@ bibliography: 'morinlab.bib' |
| 8 | 8 | |
| 9 | 9 | |Entity| Tier 1 genes| Tier 2 genes| |
| 10 | 10 | |:-:|:-:|:-:| |
| 11 | -|MCL|1|| |
|
| 11 | +|MCL|1|0| |
|
| 12 | 12 | ```mermaid |
| 13 | 13 | --- |
| 14 | 14 | config: |
| ... | ... | @@ -24,8 +24,8 @@ config: |
| 24 | 24 | sankey-beta |
| 25 | 25 | This study, New Tier 1, 1 |
| 26 | 26 | New Tier 1, MCL Tier 1, 1 |
| 27 | -This study, New Tier 2, |
|
| 28 | -New Tier 2, MCL Tier 2, |
|
| 27 | +This study, New Tier 2, 0 |
|
| 28 | +New Tier 2, MCL Tier 2, 0 |
|
| 29 | 29 | All other MCL studies, MCL Tier 1, 22 |
| 30 | 30 | All other MCL studies, MCL Tier 2, 46 |
| 31 | 31 | ``` |
papers/yanBCRTLRSignaling2012a.md
| ... | ... | @@ -8,7 +8,7 @@ bibliography: 'morinlab.bib' |
| 8 | 8 | |
| 9 | 9 | |Entity| Tier 1 genes| Tier 2 genes| |
| 10 | 10 | |:-:|:-:|:-:| |
| 11 | -|MZL|2|| |
|
| 11 | +|MZL|2|0| |
|
| 12 | 12 | ```mermaid |
| 13 | 13 | --- |
| 14 | 14 | config: |
| ... | ... | @@ -24,8 +24,8 @@ config: |
| 24 | 24 | sankey-beta |
| 25 | 25 | This study, New Tier 1, 2 |
| 26 | 26 | New Tier 1, MZL Tier 1, 2 |
| 27 | -This study, New Tier 2, |
|
| 28 | -New Tier 2, MZL Tier 2, |
|
| 27 | +This study, New Tier 2, 0 |
|
| 28 | +New Tier 2, MZL Tier 2, 0 |
|
| 29 | 29 | All other MZL studies, MZL Tier 1, 40 |
| 30 | 30 | All other MZL studies, MZL Tier 2, 74 |
| 31 | 31 | ``` |
papers/yildizActivatingSTAT6Mutations2015c.md
| ... | ... | @@ -8,8 +8,8 @@ bibliography: 'morinlab.bib' |
| 8 | 8 | |
| 9 | 9 | |Entity| Tier 1 genes| Tier 2 genes| |
| 10 | 10 | |:-:|:-:|:-:| |
| 11 | -|DLBCL|1|| |
|
| 12 | -|FL|1|| |
|
| 11 | +|DLBCL|1|0| |
|
| 12 | +|FL|1|0| |
|
| 13 | 13 | ```mermaid |
| 14 | 14 | --- |
| 15 | 15 | config: |
| ... | ... | @@ -24,11 +24,11 @@ config: |
| 24 | 24 | --- |
| 25 | 25 | sankey-beta |
| 26 | 26 | This study, New Tier 1, 1 |
| 27 | -New Tier 1, DLBCL Tier 1, 1 |
|
| 28 | -This study, New Tier 2, |
|
| 29 | -New Tier 2, DLBCL Tier 2, |
|
| 30 | -All other DLBCL studies, DLBCL Tier 1, 127 |
|
| 31 | -All other DLBCL studies, DLBCL Tier 2, 198 |
|
| 27 | +New Tier 1, FL Tier 1, 1 |
|
| 28 | +This study, New Tier 2, 0 |
|
| 29 | +New Tier 2, FL Tier 2, 0 |
|
| 30 | +All other FL studies, FL Tier 1, 65 |
|
| 31 | +All other FL studies, FL Tier 2, 50 |
|
| 32 | 32 | ``` |
| 33 | 33 | |
| 34 | 34 |
papers/zhouSporadicEndemicBurkitt2019.md
| ... | ... | @@ -8,7 +8,7 @@ bibliography: 'morinlab.bib' |
| 8 | 8 | |
| 9 | 9 | |Entity| Tier 1 genes| Tier 2 genes| |
| 10 | 10 | |:-:|:-:|:-:| |
| 11 | -|BL||1| |
|
| 11 | +|BL|0|1| |
|
| 12 | 12 | ```mermaid |
| 13 | 13 | --- |
| 14 | 14 | config: |
| ... | ... | @@ -22,8 +22,8 @@ config: |
| 22 | 22 | suffix: ' genes)' |
| 23 | 23 | --- |
| 24 | 24 | sankey-beta |
| 25 | -This study, New Tier 1, |
|
| 26 | -New Tier 1, BL Tier 1, |
|
| 25 | +This study, New Tier 1, 0 |
|
| 26 | +New Tier 1, BL Tier 1, 0 |
|
| 27 | 27 | This study, New Tier 2, 1 |
| 28 | 28 | New Tier 2, BL Tier 2, 1 |
| 29 | 29 | All other BL studies, BL Tier 1, 29 |