3b1073898778c294c2bc8b6f899282c3ea17a4e1
MZL_genes.md
| ... | ... | @@ -9,142 +9,142 @@ link-citations: true |
| 9 | 9 | |
| 10 | 10 |  |
| 11 | 11 | |
| 12 | -## Tier 1 MZL genes |
|
| 12 | +## Tier 1, high-confidence MZL genes |
|
| 13 | 13 | |
| 14 | 14 | ### *42 total* |
| 15 | 15 | |
| 16 | -|Gene|Tier| First MZL evidence | Other entities | |
|
| 17 | -|:-:|:-:|:--|:-| |
|
| 18 | -|[ACTB](ACTB)|1||[@wienandGenomicAnalysesFlowsorted2019b; @lohrDiscoveryPrioritizationSomatic2012a]| |
|
| 19 | -|[ARID1A](ARID1A)|1|[Rossi et al](papers/rossiCodingGenomeSplenic2012c)[@rossiCodingGenomeSplenic2012c]|[@krysiakRecurrentSomaticMutations2017b; @loveGeneticLandscapeMutations2012; @zhangGeneticHeterogeneityDiffuse2013; @wienandGenomicAnalysesFlowsorted2019b]| |
|
| 20 | -|[ATM](ATM)|1|[Braggio et al](papers/braggioGenomicAnalysisMarginal2012)[@braggioGenomicAnalysisMarginal2012]|[@reddyGeneticFunctionalDrivers2017; @beaLandscapeSomaticMutations2013]| |
|
| 21 | -|[BCL10](BCL10)|1|[Spina et al](papers/spinaGeneticsNodalMarginal2016b)[@spinaGeneticsNodalMarginal2016b]|[@russler-germainMutationsAssociatedProgression2023b; @morinFrequentMutationHistonemodifying2011]| |
|
| 22 | -|[BCL7A](BCL7A)|1||[@krysiakRecurrentSomaticMutations2017b; @zhangGeneticHeterogeneityDiffuse2013; @grandeGenomewideDiscoverySomatic2019; @reichelFlowSortingExome2015a]| |
|
| 23 | -|[BIRC3](BIRC3)|1|[Rossi et al](papers/rossiAlterationBIRC3Multiple2011a)[@rossiAlterationBIRC3Multiple2011a]|[@dunsCharacterizationDLBCLPMBL2021b; @beaLandscapeSomaticMutations2013; @arthurGenomewideDiscoverySomatic2018]| |
|
| 24 | -|[BRAF](BRAF)|1||[@loveGeneticLandscapeMutations2012; @tiacciBRAFMutationsHairycell2011a]| |
|
| 25 | -|[BTG1](BTG1)|1||[@morinFrequentMutationHistonemodifying2011; @burkhardtClinicalRelevanceMolecular2022b; @sarkozyMutationalLandscapeGray2021a]| |
|
| 26 | -|[CARD11](CARD11)|1|[Yan et al](papers/yanBCRTLRSignaling2012a)[@yanBCRTLRSignaling2012a]|[@wuGeneticHeterogeneityPrimary2016; @morinFrequentMutationHistonemodifying2011; @lenzOncogenicCARD11Mutations2008]| |
|
| 27 | -|[CCND3](CCND3)|1|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)[@jalladesExomeSequencingIdentifies2017]|[@morinFrequentMutationHistonemodifying2011; @deschGenotypingCirculatingTumor2020; @richterRecurrentMutationID32012a]| |
|
| 28 | -|[CXCR4](CXCR4)|1||[@khodabakhshiRecurrentTargetsAberrant2012; @paneaWholeGenomeLandscape2019; @krysiakRecurrentSomaticMutations2017b]| |
|
| 29 | -|[DTX1](DTX1)|1|[Rossi et al](papers/rossiCodingGenomeSplenic2012c)[@rossiCodingGenomeSplenic2012c]|[@gomezUltraDeepSequencingReveals2023; @zhangGeneticHeterogeneityDiffuse2013; @loveGeneticLandscapeMutations2012]| |
|
| 30 | -|[EP300](EP300)|1|[Rossi et al](papers/rossiCodingGenomeSplenic2012c)[@rossiCodingGenomeSplenic2012c]|[@pasqualucciInactivatingMutationsAcetyltransferase2011a]| |
|
| 31 | -|[EZH2](EZH2)|1||[@loveGeneticLandscapeMutations2012; @morinSomaticMutationsAltering2010a; @mottokIntegrativeGenomicAnalysis2019b]| |
|
| 32 | -|[FAS](FAS)|1|[Spina et al](papers/spinaGeneticsNodalMarginal2016b)[@spinaGeneticsNodalMarginal2016b]|[@schollMutationsRegionFAS2007]| |
|
| 33 | -|[FAT1](FAT1)|1|[Spina et al](papers/spinaGeneticsNodalMarginal2016b)[@spinaGeneticsNodalMarginal2016b]|| |
|
| 34 | -|[FOXO1](FOXO1)|1||[@schmitzBurkittLymphomaPathogenesis2012; @morinFrequentMutationHistonemodifying2011; @dunsCharacterizationDLBCLPMBL2021b]| |
|
| 35 | -|[H1-4](H1-4)|1||| |
|
| 36 | -|[H1-5](H1-5)|1||| |
|
| 37 | -|[ID3](ID3)|1|[Spina et al](papers/spinaGeneticsNodalMarginal2016b)[@spinaGeneticsNodalMarginal2016b]|[@schmitzBurkittLymphomaPathogenesis2012; @richterRecurrentMutationID32012a]| |
|
| 38 | -|[KLF2](KLF2)|1|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)[@jalladesExomeSequencingIdentifies2017]|[@pasqualucciAnalysisCodingGenome2011; @deschGenotypingCirculatingTumor2020]| |
|
| 39 | -|[KLHL6](KLHL6)|1|[Ganapathi et al](papers/ganapathiGeneticLandscapeDural2016)[@ganapathiGeneticLandscapeDural2016]|[@morinFrequentMutationHistonemodifying2011]| |
|
| 40 | -|[KMT2D](KMT2D)|1|[Rossi et al](papers/rossiCodingGenomeSplenic2012c)[@rossiCodingGenomeSplenic2012c]|[@beaLandscapeSomaticMutations2013; @grandeGenomewideDiscoverySomatic2019; @morinFrequentMutationHistonemodifying2011; @deschGenotypingCirculatingTumor2020]| |
|
| 41 | -|[MAP3K14](MAP3K14)|1|[Rossi et al](papers/rossiAlterationBIRC3Multiple2011a)[@rossiAlterationBIRC3Multiple2011a]|[@ottoGeneticLesionsTRAF32012a]| |
|
| 42 | -|[MPEG1](MPEG1)|1||[@morinMutationalStructuralAnalysis2013]| |
|
| 43 | -|[MYD88](MYD88)|1|[Yan et al](papers/yanBCRTLRSignaling2012a)[@yanBCRTLRSignaling2012a]|[@ngoOncogenicallyActiveMYD882011a]| |
|
| 44 | -|[NCOR2](NCOR2)|1|[Spina et al](papers/spinaGeneticsNodalMarginal2016b)[@spinaGeneticsNodalMarginal2016b]|[@schmitzBurkittLymphomaPathogenesis2012; @sarkozyMutationalLandscapeGray2021a]| |
|
| 45 | -|[NOL9](NOL9)|1|[Spina et al](papers/spinaGeneticsNodalMarginal2016b)[@spinaGeneticsNodalMarginal2016b]|[@schmitzGeneticsPathogenesisDiffuse2018a]| |
|
| 46 | -|[NOTCH1](NOTCH1)|1|[Rossi et al](papers/rossiCodingGenomeSplenic2012c)[@rossiCodingGenomeSplenic2012c]|[@beaLandscapeSomaticMutations2013; @pasqualucciAnalysisCodingGenome2011; @loveGeneticLandscapeMutations2012]| |
|
| 47 | -|[NOTCH2](NOTCH2)|1|[Rossi et al](papers/rossiCodingGenomeSplenic2012c)[@rossiCodingGenomeSplenic2012c]|[@beaLandscapeSomaticMutations2013; @zhangGeneticHeterogeneityDiffuse2013]| |
|
| 48 | -|[PCLO](PCLO)|1||[@lohrDiscoveryPrioritizationSomatic2012a]| |
|
| 49 | -|[POU2AF1](POU2AF1)|1||[@chapuyMolecularSubtypesDiffuse2018b; @krysiakRecurrentSomaticMutations2017b]| |
|
| 50 | -|[PTPRD](PTPRD)|1|[Spina et al](papers/spinaGeneticsNodalMarginal2016b)[@spinaGeneticsNodalMarginal2016b]|| |
|
| 51 | -|[SIN3A](SIN3A)|1|[Rossi et al](papers/rossiCodingGenomeSplenic2012c)[@rossiCodingGenomeSplenic2012c]|[@chapuyMolecularSubtypesDiffuse2018b; @grandeGenomewideDiscoverySomatic2019]| |
|
| 52 | -|[SOCS1](SOCS1)|1||[@wenigerMutationsTumorSuppressor2006a; @morinFrequentMutationHistonemodifying2011]| |
|
| 53 | -|[SPEN](SPEN)|1|[Rossi et al](papers/rossiCodingGenomeSplenic2012c)[@rossiCodingGenomeSplenic2012c]|[@sarkozyMutationalLandscapeGray2021a; @albuquerqueEnhancingKnowledgeDiscovery2017a]| |
|
| 54 | -|[STAT6](STAT6)|1||[@ritzRecurrentMutationsSTAT62009a; @yildizActivatingSTAT6Mutations2015c]| |
|
| 55 | -|[TBL1XR1](TBL1XR1)|1|[Rossi et al](papers/rossiCodingGenomeSplenic2012c)[@rossiCodingGenomeSplenic2012c]|[@lohrDiscoveryPrioritizationSomatic2012a]| |
|
| 56 | -|[TNFAIP3](TNFAIP3)|1|[Rossi et al](papers/rossiAlterationBIRC3Multiple2011a)[@rossiAlterationBIRC3Multiple2011a]|[@schmitzTNFAIP3A20Tumor2009a; @compagnoMutationsMultipleGenes2009a]| |
|
| 57 | -|[TNFRSF14](TNFRSF14)|1|[Spina et al](papers/spinaGeneticsNodalMarginal2016b)[@spinaGeneticsNodalMarginal2016b]|[@morinFrequentMutationHistonemodifying2011; @cheungAcquiredTNFRSF14Mutations2010a]| |
|
| 58 | -|[TP53](TP53)|1|[Rossi et al](papers/rossiCodingGenomeSplenic2012c)[@rossiCodingGenomeSplenic2012c]|[@morinFrequentMutationHistonemodifying2011; @tiacciPervasiveMutationsJAKSTAT2018b; @lohrDiscoveryPrioritizationSomatic2012a; @wildaInactivationARFMDM2p53Pathway2004; @beaLandscapeSomaticMutations2013]| |
|
| 59 | -|[TRAF3](TRAF3)|1|[Rossi et al](papers/rossiAlterationBIRC3Multiple2011a)[@rossiAlterationBIRC3Multiple2011a]|[@pasqualucciAnalysisCodingGenome2011; @ottoGeneticLesionsTRAF32012a]| |
|
| 16 | +|Gene|Summary| First MZL study | Other entities | QC result | |
|
| 17 | +|:-:|:--:|:-:|:-|:-| |
|
| 18 | +|[ACTB](ACTB)|Tier 1 GE[@], aSHM||[@drevalGeneticSubdivisionsFollicular2023; @lohrDiscoveryPrioritizationSomatic2012; @wienandGenomicAnalysesFlowsorted2019]|| |
|
| 19 | +|[ARID1A](ARID1A)|Tier 1 GE[@rossiCodingGenomeSplenic2012], FE[@barisicARID1AOrchestratesSWI2024]|[Rossi et al](papers/rossiCodingGenomeSplenic2012)|[@krysiakRecurrentSomaticMutations2017; @loveGeneticLandscapeMutations2012; @wienandGenomicAnalysesFlowsorted2019; @zhangGeneticHeterogeneityDiffuse2013]|| |
|
| 20 | +|[ATM](ATM)|Tier 1 GE[@braggioGenomicAnalysisMarginal2012], FE[@camachoATMGeneInactivation2002]|[Braggio et al](papers/braggioGenomicAnalysisMarginal2012)|[@beaLandscapeSomaticMutations2013; @reddyGeneticFunctionalDrivers2017]|| |
|
| 21 | +|[BCL10](BCL10)|Tier 1 GE[@spinaGeneticsNodalMarginal2016], FE[@xiaBCL10MutationsDefine2022]|[Spina et al](papers/spinaGeneticsNodalMarginal2016)|[@morinFrequentMutationHistonemodifying2011; @russler-germainMutationsAssociatedProgression2023]|| |
|
| 22 | +|[BCL7A](BCL7A)|Tier 1 GE[@], FE[@balinas-gaviraFrequentMutationsAminoterminal2020], aSHM||[@grandeGenomewideDiscoverySomatic2019; @krysiakRecurrentSomaticMutations2017; @morinFrequentMutationHistonemodifying2011; @reichelFlowSortingExome2015]|| |
|
| 23 | +|[BIRC3](BIRC3)|Tier 1 GE[@rossiAlterationBIRC3Multiple2011], aSHM|[Rossi et al](papers/rossiAlterationBIRC3Multiple2011)|[@arthurGenomewideDiscoverySomatic2018; @beaLandscapeSomaticMutations2013; @dunsCharacterizationDLBCLPMBL2021]|| |
|
| 24 | +|[BRAF](BRAF)|Tier 1 GE[@], FE[@wanMechanismActivationRAFERK2004]||[@loveGeneticLandscapeMutations2012; @tiacciBRAFMutationsHairycell2011]|| |
|
| 25 | +|[BTG1](BTG1)|Tier 1 GE[@], FE[@almasmoumFrequentLossBTG12021], aSHM||[@burkhardtClinicalRelevanceMolecular2022; @drevalGeneticSubdivisionsFollicular2023; @morinFrequentMutationHistonemodifying2011; @sarkozyMutationalLandscapeGray2021]|| |
|
| 26 | +|[CARD11](CARD11)|Tier 1 GE[@yanBCRTLRSignaling2012], FE[@lenzOncogenicCARD11Mutations2008]|[Yan et al](papers/yanBCRTLRSignaling2012)|[@lenzOncogenicCARD11Mutations2008; @morinFrequentMutationHistonemodifying2011; @wuGeneticHeterogeneityPrimary2016]|| |
|
| 27 | +|[CCND3](CCND3)|Tier 1 GE[@jalladesExomeSequencingIdentifies2017], FE[@schmitzBurkittLymphomaPathogenesis2012]|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)|[@deschGenotypingCirculatingTumor2020; @morinFrequentMutationHistonemodifying2011; @richterRecurrentMutationID32012]|| |
|
| 28 | +|[CXCR4](CXCR4)|Tier 1 GE[@], FE[@zmajkovicovaGenotypephenotypeCorrelationsWHIM2022], aSHM||[@khodabakhshiRecurrentTargetsAberrant2012; @krysiakRecurrentSomaticMutations2017; @paneaWholeGenomeLandscape2019]|| |
|
| 29 | +|[DTX1](DTX1)|Tier 1 GE[@rossiCodingGenomeSplenic2012], aSHM|[Rossi et al](papers/rossiCodingGenomeSplenic2012)|[@gomezUltraDeepSequencingReveals2023; @loveGeneticLandscapeMutations2012; @zhangGeneticHeterogeneityDiffuse2013]|| |
|
| 30 | +|[EP300](EP300)|Tier 1 GE[@rossiCodingGenomeSplenic2012], FE[@pasqualucciInactivatingMutationsAcetyltransferase2011]|[Rossi et al](papers/rossiCodingGenomeSplenic2012)|[@pasqualucciInactivatingMutationsAcetyltransferase2011]|| |
|
| 31 | +|[EZH2](EZH2)|Tier 1 GE[@], FE[@sneeringerCoordinatedActivitiesWildtype2010]||[@loveGeneticLandscapeMutations2012; @morinSomaticMutationsAltering2010; @mottokIntegrativeGenomicAnalysis2019]|| |
|
| 32 | +|[FAS](FAS)|Tier 1 GE[@spinaGeneticsNodalMarginal2016], FE[@wangFasFADDDeathDomain2010]|[Spina et al](papers/spinaGeneticsNodalMarginal2016)|[@morinFrequentMutationHistonemodifying2011; @schollMutationsRegionFAS2007]|| |
|
| 33 | +|[FAT1](FAT1)|Tier 1 GE[@spinaGeneticsNodalMarginal2016]|[Spina et al](papers/spinaGeneticsNodalMarginal2016)||| |
|
| 34 | +|[FOXO1](FOXO1)|Tier 1 GE[@], FE[@trinhAnalysisFOXO1Mutations]||[@dunsCharacterizationDLBCLPMBL2021; @morinFrequentMutationHistonemodifying2011; @schmitzBurkittLymphomaPathogenesis2012]|| |
|
| 35 | +|[H1-4](H1-4)|Tier 1 GE[@]|||| |
|
| 36 | +|[H1-5](H1-5)|Tier 1 GE[@]|||| |
|
| 37 | +|[ID3](ID3)|Tier 1 GE[@spinaGeneticsNodalMarginal2016]|[Spina et al](papers/spinaGeneticsNodalMarginal2016)|[@richterRecurrentMutationID32012; @schmitzGeneticsPathogenesisDiffuse2018]|| |
|
| 38 | +|[KLF2](KLF2)|Tier 1 GE[@jalladesExomeSequencingIdentifies2017], aSHM|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)|[@deschGenotypingCirculatingTumor2020; @drevalGeneticSubdivisionsFollicular2023; @pasqualucciAnalysisCodingGenome2011]|| |
|
| 39 | +|[KLHL6](KLHL6)|Tier 1 GE[@ganapathiGeneticLandscapeDural2016], FE[@choiLossKLHL6Promotes2018], aSHM|[Ganapathi et al](papers/ganapathiGeneticLandscapeDural2016)|[@morinFrequentMutationHistonemodifying2011]|| |
|
| 40 | +|[KMT2D](KMT2D)|Tier 1 GE[@rossiCodingGenomeSplenic2012], FE[@zhangDisruptionKMT2DPerturbs2015]|[Rossi et al](papers/rossiCodingGenomeSplenic2012)|[@beaLandscapeSomaticMutations2013; @deschGenotypingCirculatingTumor2020; @grandeGenomewideDiscoverySomatic2019; @morinFrequentMutationHistonemodifying2011]|| |
|
| 41 | +|[MAP3K14](MAP3K14)|Tier 1 GE[@rossiAlterationBIRC3Multiple2011]|[Rossi et al](papers/rossiAlterationBIRC3Multiple2011)|[@ottoGeneticLesionsTRAF32012]|| |
|
| 42 | +|[MPEG1](MPEG1)|Tier 1 GE[@]||[@morinMutationalStructuralAnalysis2013]|| |
|
| 43 | +|[MYD88](MYD88)|Tier 1 GE[@yanBCRTLRSignaling2012], FE[@ngoOncogenicallyActiveMYD882011]|[Yan et al](papers/yanBCRTLRSignaling2012)|[@drevalGeneticSubdivisionsFollicular2023; @ngoOncogenicallyActiveMYD882011]|| |
|
| 44 | +|[NCOR2](NCOR2)|Tier 1 GE[@spinaGeneticsNodalMarginal2016]|[Spina et al](papers/spinaGeneticsNodalMarginal2016)|[@sarkozyMutationalLandscapeGray2021; @schmitzBurkittLymphomaPathogenesis2012]|| |
|
| 45 | +|[NOL9](NOL9)|Tier 1 GE[@spinaGeneticsNodalMarginal2016]|[Spina et al](papers/spinaGeneticsNodalMarginal2016)|[@schmitzGeneticsPathogenesisDiffuse2018]|| |
|
| 46 | +|[NOTCH1](NOTCH1)|Tier 1 GE[@rossiCodingGenomeSplenic2012], FE[@ryanCellRegulomeLinks2017]|[Rossi et al](papers/rossiCodingGenomeSplenic2012)|[@beaLandscapeSomaticMutations2013; @loveGeneticLandscapeMutations2012; @pasqualucciAnalysisCodingGenome2011]|| |
|
| 47 | +|[NOTCH2](NOTCH2)|Tier 1 GE[@rossiCodingGenomeSplenic2012], FE[@leeGainoffunctionMutationsCopy2009]|[Rossi et al](papers/rossiCodingGenomeSplenic2012)|[@beaLandscapeSomaticMutations2013; @zhangGeneticHeterogeneityDiffuse2013]|| |
|
| 48 | +|[PCLO](PCLO)|Tier 1 GE[@]||[@lohrDiscoveryPrioritizationSomatic2012]|| |
|
| 49 | +|[POU2AF1](POU2AF1)|Tier 1 GE[@], FE[@gonzalez-rinconUnravelingTransformationFollicular2019], aSHM||[@chapuyMolecularSubtypesDiffuse2018; @krysiakRecurrentSomaticMutations2017]|| |
|
| 50 | +|[PTPRD](PTPRD)|Tier 1 GE[@spinaGeneticsNodalMarginal2016]|[Spina et al](papers/spinaGeneticsNodalMarginal2016)|[@drevalGeneticSubdivisionsFollicular2023]|| |
|
| 51 | +|[SIN3A](SIN3A)|Tier 1 GE[@rossiCodingGenomeSplenic2012]|[Rossi et al](papers/rossiCodingGenomeSplenic2012)|[@chapuyMolecularSubtypesDiffuse2018; @grandeGenomewideDiscoverySomatic2019]|| |
|
| 52 | +|[SOCS1](SOCS1)|Tier 1 GE[@], FE[@melznerBiallelicMutationSOCS12005], aSHM||[@drevalGeneticSubdivisionsFollicular2023; @morinFrequentMutationHistonemodifying2011; @wenigerMutationsTumorSuppressor2006]|| |
|
| 53 | +|[SPEN](SPEN)|Tier 1 GE[@rossiCodingGenomeSplenic2012]|[Rossi et al](papers/rossiCodingGenomeSplenic2012)|[@albuquerqueEnhancingKnowledgeDiscovery2017; @sarkozyMutationalLandscapeGray2021]|| |
|
| 54 | +|[STAT6](STAT6)|Tier 1 GE[@], FE[@mentzPARP14NovelTarget2022]||[@ritzRecurrentMutationsSTAT62009; @yildizActivatingSTAT6Mutations2015]|| |
|
| 55 | +|[TBL1XR1](TBL1XR1)|Tier 1 GE[@rossiCodingGenomeSplenic2012], FE[@venturuttiTBL1XR1MutationsDrive2020]|[Rossi et al](papers/rossiCodingGenomeSplenic2012)|[@drevalGeneticSubdivisionsFollicular2023; @lohrDiscoveryPrioritizationSomatic2012]|| |
|
| 56 | +|[TNFAIP3](TNFAIP3)|Tier 1 GE[@rossiAlterationBIRC3Multiple2011], FE[@compagnoMutationsMultipleGenes2009]|[Rossi et al](papers/rossiAlterationBIRC3Multiple2011)|[@compagnoMutationsMultipleGenes2009; @drevalGeneticSubdivisionsFollicular2023; @schmitzTNFAIP3A20Tumor2009]|| |
|
| 57 | +|[TNFRSF14](TNFRSF14)|Tier 1 GE[@spinaGeneticsNodalMarginal2016], FE[@]|[Spina et al](papers/spinaGeneticsNodalMarginal2016)|[@cheungAcquiredTNFRSF14Mutations2010; @morinFrequentMutationHistonemodifying2011]|| |
|
| 58 | +|[TP53](TP53)|Tier 1 GE[@rossiCodingGenomeSplenic2012], FE[@katoUnderstandingFunctionstructureFunctionmutation2003]|[Rossi et al](papers/rossiCodingGenomeSplenic2012)|[@beaLandscapeSomaticMutations2013; @morinFrequentMutationHistonemodifying2011; @tiacciPervasiveMutationsJAKSTAT2018; @wildaInactivationARFMDM2p53Pathway2004]|| |
|
| 59 | +|[TRAF3](TRAF3)|Tier 1 GE[@rossiAlterationBIRC3Multiple2011]|[Rossi et al](papers/rossiAlterationBIRC3Multiple2011)|[@ottoGeneticLesionsTRAF32012; @pasqualucciAnalysisCodingGenome2011]|| |
|
| 60 | 60 | |
| 61 | -## Tier 2 MZL genes |
|
| 61 | +## Tier 2, low-confidence MZL genes |
|
| 62 | 62 | |
| 63 | 63 | ### *74 total* |
| 64 | 64 | |
| 65 | -|Gene|Tier| First MZL evidence | Other entities | |
|
| 66 | -|:-:|:-:|:--|:-| |
|
| 67 | -|[ABCA13](ABCA13)|2|[Spina et al](papers/spinaGeneticsNodalMarginal2016b)[@spinaGeneticsNodalMarginal2016b]|[@sarkozyMutationalLandscapeGray2021a]| |
|
| 68 | -|[ACTG1](ACTG1)|2|[Spina et al](papers/spinaGeneticsNodalMarginal2016b)[@spinaGeneticsNodalMarginal2016b]|[@hubschmannMutationalMechanismsShaping2021b; @deschGenotypingCirculatingTumor2020]| |
|
| 69 | -|[ADD2](ADD2)|2|[Spina et al](papers/spinaGeneticsNodalMarginal2016b)[@spinaGeneticsNodalMarginal2016b]|| |
|
| 70 | -|[AMN](AMN)|2|[Spina et al](papers/spinaGeneticsNodalMarginal2016b)[@spinaGeneticsNodalMarginal2016b]|| |
|
| 71 | -|[AMOTL1](AMOTL1)|2|[Parry et al](papers/parryWholeExomeSequencing2013)[@parryWholeExomeSequencing2013]|| |
|
| 72 | -|[AOC2](AOC2)|2|[Spina et al](papers/spinaGeneticsNodalMarginal2016b)[@spinaGeneticsNodalMarginal2016b]|| |
|
| 73 | -|[ARHGAP20](ARHGAP20)|2|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)[@jalladesExomeSequencingIdentifies2017]|| |
|
| 74 | -|[ARHGEF15](ARHGEF15)|2|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)[@jalladesExomeSequencingIdentifies2017]|| |
|
| 75 | -|[ARHGEF17](ARHGEF17)|2|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)[@jalladesExomeSequencingIdentifies2017]|| |
|
| 76 | -|[BCOR](BCOR)|2|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)[@jalladesExomeSequencingIdentifies2017]|[@nadeuGenomicEpigenomicInsights2020b]| |
|
| 77 | -|[C6orf103](C6orf103)|2|[Spina et al](papers/spinaGeneticsNodalMarginal2016b)[@spinaGeneticsNodalMarginal2016b]|| |
|
| 78 | -|[CBFA2T3](CBFA2T3)|2|[Parry et al](papers/parryWholeExomeSequencing2013)[@parryWholeExomeSequencing2013]|| |
|
| 79 | -|[CD79A](CD79A)|2|[Rossi et al](papers/rossiCodingGenomeSplenic2012c)[@rossiCodingGenomeSplenic2012c]|[@burkhardtClinicalRelevanceMolecular2022b]| |
|
| 80 | -|[CD9B](CD9B)|2|[Vandenbrand et al](papers/vandenbrandRecurrentMutationsGenes2017)[@vandenbrandRecurrentMutationsGenes2017]|| |
|
| 81 | -|[CDC42BPB](CDC42BPB)|2|[Spina et al](papers/spinaGeneticsNodalMarginal2016b)[@spinaGeneticsNodalMarginal2016b]|[@hubschmannMutationalMechanismsShaping2021b]| |
|
| 82 | -|[CDKN2A](CDKN2A)|2|[Spina et al](papers/spinaGeneticsNodalMarginal2016b)[@spinaGeneticsNodalMarginal2016b]|[@morinMutationalStructuralAnalysis2013; @grandeGenomewideDiscoverySomatic2019]| |
|
| 83 | -|[CLGN](CLGN)|2|[Spina et al](papers/spinaGeneticsNodalMarginal2016b)[@spinaGeneticsNodalMarginal2016b]|| |
|
| 84 | -|[CNBP](CNBP)|2|[Spina et al](papers/spinaGeneticsNodalMarginal2016b)[@spinaGeneticsNodalMarginal2016b]|| |
|
| 85 | -|[CNKSR2](CNKSR2)|2|[Spina et al](papers/spinaGeneticsNodalMarginal2016b)[@spinaGeneticsNodalMarginal2016b]|| |
|
| 86 | -|[CREBBP](CREBBP)|2|[Parry et al](papers/parryWholeExomeSequencing2013)[@parryWholeExomeSequencing2013]|[@dunsCharacterizationDLBCLPMBL2021b; @pasqualucciInactivatingMutationsAcetyltransferase2011a; @loveGeneticLandscapeMutations2012]| |
|
| 87 | -|[DNAH5](DNAH5)|2|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)[@jalladesExomeSequencingIdentifies2017]|[@morinMutationalStructuralAnalysis2013]| |
|
| 88 | -|[DNAH7](DNAH7)|2|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)[@jalladesExomeSequencingIdentifies2017]|| |
|
| 89 | -|[DNAI1](DNAI1)|2|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)[@jalladesExomeSequencingIdentifies2017]|| |
|
| 90 | -|[DOCK6](DOCK6)|2|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)[@jalladesExomeSequencingIdentifies2017]|| |
|
| 91 | -|[DSP](DSP)|2||[@zhangGeneticHeterogeneityDiffuse2013]| |
|
| 92 | -|[DTNB](DTNB)|2||| |
|
| 93 | -|[DTX3L](DTX3L)|2|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)[@jalladesExomeSequencingIdentifies2017]|| |
|
| 94 | -|[EGR1](EGR1)|2|[Rossi et al](papers/rossiCodingGenomeSplenic2012c)[@rossiCodingGenomeSplenic2012c]|[@reichelFlowSortingExome2015a; @krysiakRecurrentSomaticMutations2017b]| |
|
| 95 | -|[EGR2](EGR2)|2|[Rossi et al](papers/rossiCodingGenomeSplenic2012c)[@rossiCodingGenomeSplenic2012c]|| |
|
| 96 | -|[EZH1](EZH1)|2|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)[@jalladesExomeSequencingIdentifies2017]|| |
|
| 97 | -|[FAT4](FAT4)|2|[Parry et al](papers/parryWholeExomeSequencing2013)[@parryWholeExomeSequencing2013]|[@morinMutationalStructuralAnalysis2013; @zhangGenomicLandscapeMantle2014]| |
|
| 98 | -|[FBXO11](FBXO11)|2|[Parry et al](papers/parryWholeExomeSequencing2013)[@parryWholeExomeSequencing2013]|[@richterRecurrentMutationID32012a; @hubschmannMutationalMechanismsShaping2021b]| |
|
| 99 | -|[GPR98](GPR98)|2|[Spina et al](papers/spinaGeneticsNodalMarginal2016b)[@spinaGeneticsNodalMarginal2016b]|| |
|
| 100 | -|[GPS2](GPS2)|2|[Rossi et al](papers/rossiCodingGenomeSplenic2012c)[@rossiCodingGenomeSplenic2012c]|| |
|
| 101 | -|[HIST1H1D](HIST1H1D)|2|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)[@jalladesExomeSequencingIdentifies2017]|[@krysiakRecurrentSomaticMutations2017b; @morinMutationalStructuralAnalysis2013]| |
|
| 102 | -|[HIST1H2AD](HIST1H2AD)|2|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)[@jalladesExomeSequencingIdentifies2017]|| |
|
| 103 | -|[HIST1H2AG](HIST1H2AG)|2|[Rossi et al](papers/rossiCodingGenomeSplenic2012c)[@rossiCodingGenomeSplenic2012c]|[@krysiakRecurrentSomaticMutations2017b; @paneaWholeGenomeLandscape2019; @morinMutationalStructuralAnalysis2013]| |
|
| 104 | -|[HIST1H2BK](HIST1H2BK)|2|[Rossi et al](papers/rossiCodingGenomeSplenic2012c)[@rossiCodingGenomeSplenic2012c]|[@paneaWholeGenomeLandscape2019; @zhangGeneticHeterogeneityDiffuse2013]| |
|
| 105 | -|[HIST4H4](HIST4H4)|2|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)[@jalladesExomeSequencingIdentifies2017]|| |
|
| 106 | -|[HRAS](HRAS)|2|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)[@jalladesExomeSequencingIdentifies2017]|[@reddyGeneticFunctionalDrivers2017]| |
|
| 107 | -|[IKBKB](IKBKB)|2|[Rossi et al](papers/rossiAlterationBIRC3Multiple2011a)[@rossiAlterationBIRC3Multiple2011a]|[@wienandGenomicAnalysesFlowsorted2019b; @reddyGeneticFunctionalDrivers2017]| |
|
| 108 | -|[KAT6A](KAT6A)|2|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)[@jalladesExomeSequencingIdentifies2017]|| |
|
| 109 | -|[KDM6A](KDM6A)|2|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)[@jalladesExomeSequencingIdentifies2017]|| |
|
| 110 | -|[KIF26A](KIF26A)|2|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)[@jalladesExomeSequencingIdentifies2017]|| |
|
| 111 | -|[LRP1B](LRP1B)|2|[Spina et al](papers/spinaGeneticsNodalMarginal2016b)[@spinaGeneticsNodalMarginal2016b]|[@zhangGeneticHeterogeneityDiffuse2013]| |
|
| 112 | -|[MCRS1](MCRS1)|2|[Rossi et al](papers/rossiCodingGenomeSplenic2012c)[@rossiCodingGenomeSplenic2012c]|| |
|
| 113 | -|[MGA](MGA)|2|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)[@jalladesExomeSequencingIdentifies2017]|[@zhangGeneticHeterogeneityDiffuse2013]| |
|
| 114 | -|[MSL2](MSL2)|2|[Rossi et al](papers/rossiCodingGenomeSplenic2012c)[@rossiCodingGenomeSplenic2012c]|| |
|
| 115 | -|[MYC](MYC)|2|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)[@jalladesExomeSequencingIdentifies2017]|[@johnstonCmycHypermutationBurkitt1992; @pasqualucciHypermutationMultipleProtooncogenes2001a; @dunsCharacterizationDLBCLPMBL2021b]| |
|
| 116 | -|[MYLK](MYLK)|2|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)[@jalladesExomeSequencingIdentifies2017]|| |
|
| 117 | -|[NCOA6](NCOA6)|2|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)[@jalladesExomeSequencingIdentifies2017]|| |
|
| 118 | -|[NRAS](NRAS)|2|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)[@jalladesExomeSequencingIdentifies2017]|| |
|
| 119 | -|[PACRG](PACRG)|2|[Spina et al](papers/spinaGeneticsNodalMarginal2016b)[@spinaGeneticsNodalMarginal2016b]|| |
|
| 120 | -|[PARK2](PARK2)|2|[Spina et al](papers/spinaGeneticsNodalMarginal2016b)[@spinaGeneticsNodalMarginal2016b]|| |
|
| 121 | -|[PLA2G4D](PLA2G4D)|2|[Parry et al](papers/parryWholeExomeSequencing2013)[@parryWholeExomeSequencing2013]|| |
|
| 122 | -|[PLXNB3](PLXNB3)|2|[Spina et al](papers/spinaGeneticsNodalMarginal2016b)[@spinaGeneticsNodalMarginal2016b]|[@zhangGenomicLandscapeMantle2014]| |
|
| 123 | -|[RAF1](RAF1)|2|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)[@jalladesExomeSequencingIdentifies2017]|[@fanComprehensiveCharacterizationDriver2020b]| |
|
| 124 | -|[RAPGEF2](RAPGEF2)|2||[@zhangGeneticHeterogeneityDiffuse2013]| |
|
| 125 | -|[RCOR1](RCOR1)|2|[Spina et al](papers/spinaGeneticsNodalMarginal2016b)[@spinaGeneticsNodalMarginal2016b]|| |
|
| 126 | -|[RFTN1](RFTN1)|2||[@arthurGenomewideDiscoverySomatic2018; @dunsCharacterizationDLBCLPMBL2021b]| |
|
| 127 | -|[ROCK1](ROCK1)|2|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)[@jalladesExomeSequencingIdentifies2017]|| |
|
| 128 | -|[RPL1L](RPL1L)|2|[Spina et al](papers/spinaGeneticsNodalMarginal2016b)[@spinaGeneticsNodalMarginal2016b]|| |
|
| 129 | -|[SAMD5](SAMD5)|2|[Spina et al](papers/spinaGeneticsNodalMarginal2016b)[@spinaGeneticsNodalMarginal2016b]|| |
|
| 130 | -|[SCG3](SCG3)|2|[Spina et al](papers/spinaGeneticsNodalMarginal2016b)[@spinaGeneticsNodalMarginal2016b]|| |
|
| 131 | -|[STXBP5](STXBP5)|2|[Spina et al](papers/spinaGeneticsNodalMarginal2016b)[@spinaGeneticsNodalMarginal2016b]|| |
|
| 132 | -|[SWAP70](SWAP70)|2|[Rossi et al](papers/rossiCodingGenomeSplenic2012c)[@rossiCodingGenomeSplenic2012c]|| |
|
| 133 | -|[TAF1](TAF1)|2|[Spina et al](papers/spinaGeneticsNodalMarginal2016b)[@spinaGeneticsNodalMarginal2016b]|[@morinMutationalStructuralAnalysis2013]| |
|
| 134 | -|[TBK1](TBK1)|2|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)[@jalladesExomeSequencingIdentifies2017]|| |
|
| 135 | -|[TCTN2](TCTN2)|2|[Spina et al](papers/spinaGeneticsNodalMarginal2016b)[@spinaGeneticsNodalMarginal2016b]|| |
|
| 136 | -|[TNIP2](TNIP2)|2|[Vandenbrand et al](papers/vandenbrandRecurrentMutationsGenes2017)[@vandenbrandRecurrentMutationsGenes2017]|| |
|
| 137 | -|[TRRAP](TRRAP)|2|[Rossi et al](papers/rossiCodingGenomeSplenic2012c)[@rossiCodingGenomeSplenic2012c]|[@zhangGeneticHeterogeneityDiffuse2013]| |
|
| 138 | -|[USH2A](USH2A)|2|[Parry et al](papers/parryWholeExomeSequencing2013)[@parryWholeExomeSequencing2013]|| |
|
| 139 | -|[WAC](WAC)|2|[Rossi et al](papers/rossiCodingGenomeSplenic2012c)[@rossiCodingGenomeSplenic2012c]|[@reddyGeneticFunctionalDrivers2017]| |
|
| 140 | -|[WNK1](WNK1)|2|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)[@jalladesExomeSequencingIdentifies2017]|[@thomasGeneticSubgroupsInform2023; @hubschmannMutationalMechanismsShaping2021b]| |
|
| 65 | +|Gene|Summary| First MZL study | Other entities | QC result | |
|
| 66 | +|:-:|:--:|:-:|:-|:-| |
|
| 67 | +|[ABCA13](ABCA13)|Tier 2 GE[@spinaGeneticsNodalMarginal2016]|[Spina et al](papers/spinaGeneticsNodalMarginal2016)|[@sarkozyMutationalLandscapeGray2021]|| |
|
| 68 | +|[ACTG1](ACTG1)|Tier 2 GE[@spinaGeneticsNodalMarginal2016], aSHM|[Spina et al](papers/spinaGeneticsNodalMarginal2016)|[@deschGenotypingCirculatingTumor2020; @fanComprehensiveCharacterizationDriver2020; @hubschmannMutationalMechanismsShaping2021]|| |
|
| 69 | +|[ADD2](ADD2)|Tier 2 GE[@spinaGeneticsNodalMarginal2016]|[Spina et al](papers/spinaGeneticsNodalMarginal2016)||| |
|
| 70 | +|[AMN](AMN)|Tier 2 GE[@spinaGeneticsNodalMarginal2016]|[Spina et al](papers/spinaGeneticsNodalMarginal2016)||| |
|
| 71 | +|[AMOTL1](AMOTL1)|Tier 2 GE[@parryWholeExomeSequencing2013]|[Parry et al](papers/parryWholeExomeSequencing2013)||| |
|
| 72 | +|[AOC2](AOC2)|Tier 2 GE[@spinaGeneticsNodalMarginal2016]|[Spina et al](papers/spinaGeneticsNodalMarginal2016)||| |
|
| 73 | +|[ARHGAP20](ARHGAP20)|Tier 2 GE[@jalladesExomeSequencingIdentifies2017]|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)||| |
|
| 74 | +|[ARHGEF15](ARHGEF15)|Tier 2 GE[@jalladesExomeSequencingIdentifies2017]|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)||| |
|
| 75 | +|[ARHGEF17](ARHGEF17)|Tier 2 GE[@jalladesExomeSequencingIdentifies2017]|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)||| |
|
| 76 | +|[BCOR](BCOR)|Tier 2 GE[@jalladesExomeSequencingIdentifies2017]|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)|[@nadeuGenomicEpigenomicInsights2020b]|| |
|
| 77 | +|[C6orf103](C6orf103)|Tier 2 GE[@spinaGeneticsNodalMarginal2016]|[Spina et al](papers/spinaGeneticsNodalMarginal2016)||| |
|
| 78 | +|[CBFA2T3](CBFA2T3)|Tier 2 GE[@parryWholeExomeSequencing2013]|[Parry et al](papers/parryWholeExomeSequencing2013)||| |
|
| 79 | +|[CD79A](CD79A)|Tier 2 GE[@rossiCodingGenomeSplenic2012]|[Rossi et al](papers/rossiCodingGenomeSplenic2012)|[@burkhardtClinicalRelevanceMolecular2022]|| |
|
| 80 | +|[CD9B](CD9B)|Tier 2 GE[@vandenbrandRecurrentMutationsGenes2017]|[Vandenbrand et al](papers/vandenbrandRecurrentMutationsGenes2017)||| |
|
| 81 | +|[CDC42BPB](CDC42BPB)|Tier 2 GE[@spinaGeneticsNodalMarginal2016]|[Spina et al](papers/spinaGeneticsNodalMarginal2016)|[@hubschmannMutationalMechanismsShaping2021]|| |
|
| 82 | +|[CDKN2A](CDKN2A)|Tier 2 GE[@spinaGeneticsNodalMarginal2016], FE[@kannengiesserFunctionalStructuralGenetic2009]|[Spina et al](papers/spinaGeneticsNodalMarginal2016)|[@grandeGenomewideDiscoverySomatic2019; @morinMutationalStructuralAnalysis2013]|| |
|
| 83 | +|[CLGN](CLGN)|Tier 2 GE[@spinaGeneticsNodalMarginal2016]|[Spina et al](papers/spinaGeneticsNodalMarginal2016)||| |
|
| 84 | +|[CNBP](CNBP)|Tier 2 GE[@spinaGeneticsNodalMarginal2016]|[Spina et al](papers/spinaGeneticsNodalMarginal2016)||| |
|
| 85 | +|[CNKSR2](CNKSR2)|Tier 2 GE[@spinaGeneticsNodalMarginal2016]|[Spina et al](papers/spinaGeneticsNodalMarginal2016)||| |
|
| 86 | +|[CREBBP](CREBBP)|Tier 2 GE[@parryWholeExomeSequencing2013], FE[@pasqualucciInactivatingMutationsAcetyltransferase2011]|[Parry et al](papers/parryWholeExomeSequencing2013)|[@dunsCharacterizationDLBCLPMBL2021; @loveGeneticLandscapeMutations2012; @pasqualucciInactivatingMutationsAcetyltransferase2011]|| |
|
| 87 | +|[DNAH5](DNAH5)|Tier 2 GE[@jalladesExomeSequencingIdentifies2017]|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)|[@morinMutationalStructuralAnalysis2013]|| |
|
| 88 | +|[DNAH7](DNAH7)|Tier 2 GE[@jalladesExomeSequencingIdentifies2017]|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)||| |
|
| 89 | +|[DNAI1](DNAI1)|Tier 2 GE[@jalladesExomeSequencingIdentifies2017]|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)||| |
|
| 90 | +|[DOCK6](DOCK6)|Tier 2 GE[@jalladesExomeSequencingIdentifies2017]|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)||| |
|
| 91 | +|[DSP](DSP)|Tier 2 GE[@]||[@zhangGeneticHeterogeneityDiffuse2013]|| |
|
| 92 | +|[DTNB](DTNB)|Tier 2 GE[@]|||| |
|
| 93 | +|[DTX3L](DTX3L)|Tier 2 GE[@jalladesExomeSequencingIdentifies2017]|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)||| |
|
| 94 | +|[EGR1](EGR1)|Tier 2 GE[@rossiCodingGenomeSplenic2012]|[Rossi et al](papers/rossiCodingGenomeSplenic2012)|[@krysiakRecurrentSomaticMutations2017; @reichelFlowSortingExome2015]|| |
|
| 95 | +|[EGR2](EGR2)|Tier 2 GE[@rossiCodingGenomeSplenic2012]|[Rossi et al](papers/rossiCodingGenomeSplenic2012)||| |
|
| 96 | +|[EZH1](EZH1)|Tier 2 GE[@jalladesExomeSequencingIdentifies2017]|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)||| |
|
| 97 | +|[FAT4](FAT4)|Tier 2 GE[@parryWholeExomeSequencing2013]|[Parry et al](papers/parryWholeExomeSequencing2013)|[@morinMutationalStructuralAnalysis2013; @zhangGenomicLandscapeMantle2014]|| |
|
| 98 | +|[FBXO11](FBXO11)|Tier 2 GE[@parryWholeExomeSequencing2013], FE[@duanFBXO11TargetsBCL62011]|[Parry et al](papers/parryWholeExomeSequencing2013)|[@arthurGenomewideDiscoverySomatic2018; @richterRecurrentMutationID32012]|| |
|
| 99 | +|[GPR98](GPR98)|Tier 2 GE[@spinaGeneticsNodalMarginal2016]|[Spina et al](papers/spinaGeneticsNodalMarginal2016)||| |
|
| 100 | +|[GPS2](GPS2)|Tier 2 GE[@rossiCodingGenomeSplenic2012]|[Rossi et al](papers/rossiCodingGenomeSplenic2012)||| |
|
| 101 | +|[HIST1H1D](HIST1H1D)|Tier 2 GE[@jalladesExomeSequencingIdentifies2017], aSHM|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)|[@krysiakRecurrentSomaticMutations2017; @morinMutationalStructuralAnalysis2013]|| |
|
| 102 | +|[HIST1H2AD](HIST1H2AD)|Tier 2 GE[@jalladesExomeSequencingIdentifies2017]|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)||| |
|
| 103 | +|[HIST1H2AG](HIST1H2AG)|Tier 2 GE[@rossiCodingGenomeSplenic2012]|[Rossi et al](papers/rossiCodingGenomeSplenic2012)|[@krysiakRecurrentSomaticMutations2017; @morinMutationalStructuralAnalysis2013; @paneaWholeGenomeLandscape2019]|| |
|
| 104 | +|[HIST1H2BK](HIST1H2BK)|Tier 2 GE[@rossiCodingGenomeSplenic2012], aSHM|[Rossi et al](papers/rossiCodingGenomeSplenic2012)|[@paneaWholeGenomeLandscape2019; @zhangGeneticHeterogeneityDiffuse2013]|| |
|
| 105 | +|[HIST4H4](HIST4H4)|Tier 2 GE[@jalladesExomeSequencingIdentifies2017]|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)||| |
|
| 106 | +|[HRAS](HRAS)|Tier 2 GE[@jalladesExomeSequencingIdentifies2017]|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)|[@reddyGeneticFunctionalDrivers2017]|| |
|
| 107 | +|[IKBKB](IKBKB)|Tier 2 GE[@rossiAlterationBIRC3Multiple2011]|[Rossi et al](papers/rossiAlterationBIRC3Multiple2011)|[@reddyGeneticFunctionalDrivers2017; @wienandGenomicAnalysesFlowsorted2019]|| |
|
| 108 | +|[KAT6A](KAT6A)|Tier 2 GE[@jalladesExomeSequencingIdentifies2017]|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)||| |
|
| 109 | +|[KDM6A](KDM6A)|Tier 2 GE[@jalladesExomeSequencingIdentifies2017]|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)||| |
|
| 110 | +|[KIF26A](KIF26A)|Tier 2 GE[@jalladesExomeSequencingIdentifies2017]|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)||| |
|
| 111 | +|[LRP1B](LRP1B)|Tier 2 GE[@spinaGeneticsNodalMarginal2016]|[Spina et al](papers/spinaGeneticsNodalMarginal2016)|[@zhangGeneticHeterogeneityDiffuse2013]|| |
|
| 112 | +|[MCRS1](MCRS1)|Tier 2 GE[@rossiCodingGenomeSplenic2012]|[Rossi et al](papers/rossiCodingGenomeSplenic2012)||| |
|
| 113 | +|[MGA](MGA)|Tier 2 GE[@jalladesExomeSequencingIdentifies2017], FE[@depaoliMGASuppressorMYC2013]|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)|[@reddyGeneticFunctionalDrivers2017]|| |
|
| 114 | +|[MSL2](MSL2)|Tier 2 GE[@rossiCodingGenomeSplenic2012]|[Rossi et al](papers/rossiCodingGenomeSplenic2012)||| |
|
| 115 | +|[MYC](MYC)|Tier 2 GE[@jalladesExomeSequencingIdentifies2017], FE[@freieGermlinePointMutation2024], aSHM|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)|[@dunsCharacterizationDLBCLPMBL2021; @johnstonCmycHypermutationBurkitt1992; @pasqualucciHypermutationMultipleProtooncogenes2001]|| |
|
| 116 | +|[MYLK](MYLK)|Tier 2 GE[@jalladesExomeSequencingIdentifies2017]|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)||| |
|
| 117 | +|[NCOA6](NCOA6)|Tier 2 GE[@jalladesExomeSequencingIdentifies2017]|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)||| |
|
| 118 | +|[NRAS](NRAS)|Tier 2 GE[@jalladesExomeSequencingIdentifies2017]|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)||| |
|
| 119 | +|[PACRG](PACRG)|Tier 2 GE[@spinaGeneticsNodalMarginal2016]|[Spina et al](papers/spinaGeneticsNodalMarginal2016)||| |
|
| 120 | +|[PARK2](PARK2)|Tier 2 GE[@spinaGeneticsNodalMarginal2016]|[Spina et al](papers/spinaGeneticsNodalMarginal2016)||| |
|
| 121 | +|[PLA2G4D](PLA2G4D)|Tier 2 GE[@parryWholeExomeSequencing2013]|[Parry et al](papers/parryWholeExomeSequencing2013)||| |
|
| 122 | +|[PLXNB3](PLXNB3)|Tier 2 GE[@spinaGeneticsNodalMarginal2016]|[Spina et al](papers/spinaGeneticsNodalMarginal2016)|[@zhangGenomicLandscapeMantle2014]|| |
|
| 123 | +|[RAF1](RAF1)|Tier 2 GE[@jalladesExomeSequencingIdentifies2017]|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)|[@fanComprehensiveCharacterizationDriver2020]|| |
|
| 124 | +|[RAPGEF2](RAPGEF2)|Tier 2 GE[@]||[@zhangGeneticHeterogeneityDiffuse2013]|| |
|
| 125 | +|[RCOR1](RCOR1)|Tier 2 GE[@spinaGeneticsNodalMarginal2016]|[Spina et al](papers/spinaGeneticsNodalMarginal2016)||| |
|
| 126 | +|[RFTN1](RFTN1)|Tier 2 GE[@], aSHM||[@arthurGenomewideDiscoverySomatic2018; @dunsCharacterizationDLBCLPMBL2021]|| |
|
| 127 | +|[ROCK1](ROCK1)|Tier 2 GE[@jalladesExomeSequencingIdentifies2017]|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)||| |
|
| 128 | +|[RPL1L](RPL1L)|Tier 2 GE[@spinaGeneticsNodalMarginal2016]|[Spina et al](papers/spinaGeneticsNodalMarginal2016)||| |
|
| 129 | +|[SAMD5](SAMD5)|Tier 2 GE[@spinaGeneticsNodalMarginal2016]|[Spina et al](papers/spinaGeneticsNodalMarginal2016)||| |
|
| 130 | +|[SCG3](SCG3)|Tier 2 GE[@spinaGeneticsNodalMarginal2016]|[Spina et al](papers/spinaGeneticsNodalMarginal2016)||| |
|
| 131 | +|[STXBP5](STXBP5)|Tier 2 GE[@spinaGeneticsNodalMarginal2016]|[Spina et al](papers/spinaGeneticsNodalMarginal2016)||| |
|
| 132 | +|[SWAP70](SWAP70)|Tier 2 GE[@rossiCodingGenomeSplenic2012]|[Rossi et al](papers/rossiCodingGenomeSplenic2012)||| |
|
| 133 | +|[TAF1](TAF1)|Tier 2 GE[@spinaGeneticsNodalMarginal2016]|[Spina et al](papers/spinaGeneticsNodalMarginal2016)|[@morinMutationalStructuralAnalysis2013]|| |
|
| 134 | +|[TBK1](TBK1)|Tier 2 GE[@jalladesExomeSequencingIdentifies2017]|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)||| |
|
| 135 | +|[TCTN2](TCTN2)|Tier 2 GE[@spinaGeneticsNodalMarginal2016]|[Spina et al](papers/spinaGeneticsNodalMarginal2016)||| |
|
| 136 | +|[TNIP2](TNIP2)|Tier 2 GE[@vandenbrandRecurrentMutationsGenes2017]|[Vandenbrand et al](papers/vandenbrandRecurrentMutationsGenes2017)||| |
|
| 137 | +|[TRRAP](TRRAP)|Tier 2 GE[@rossiCodingGenomeSplenic2012]|[Rossi et al](papers/rossiCodingGenomeSplenic2012)|[@zhangGeneticHeterogeneityDiffuse2013]|| |
|
| 138 | +|[USH2A](USH2A)|Tier 2 GE[@parryWholeExomeSequencing2013]|[Parry et al](papers/parryWholeExomeSequencing2013)||| |
|
| 139 | +|[WAC](WAC)|Tier 2 GE[@rossiCodingGenomeSplenic2012]|[Rossi et al](papers/rossiCodingGenomeSplenic2012)|[@reddyGeneticFunctionalDrivers2017]|| |
|
| 140 | +|[WNK1](WNK1)|Tier 2 GE[@jalladesExomeSequencingIdentifies2017]|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)|[@hubschmannMutationalMechanismsShaping2021; @thomasGeneticSubgroupsInform2023]|| |
|
| 141 | 141 | |
| 142 | -## Tier 3 MZL genes |
|
| 142 | +## Tier 3, retired MZL genes |
|
| 143 | 143 | |
| 144 | 144 | ### *0 total* |
| 145 | 145 | |
| 146 | -|Gene|Tier| First MZL evidence | Other entities | |
|
| 147 | -|:-:|:-:|:--|:-| |
|
| 146 | +|Gene|Summary| First MZL study | Other entities | QC result | |
|
| 147 | +|:-:|:--:|:-:|:-|:-| |
|
| 148 | 148 | |
| 149 | 149 | |
| 150 | 150 | # References |