3bd5e48ff12cbf8892171594b366567f6b162a8b
FAM129B.md
| ... | ... | @@ -8,9 +8,6 @@ nocite: | |
| 8 | 8 | [[_TOC_]] |
| 9 | 9 | |
| 10 | 10 | |
| 11 | - |
|
| 12 | - |
|
| 13 | - |
|
| 14 | 11 | ## Relevance tier by entity |
| 15 | 12 | |
| 16 | 13 | [[include:table1_FAM129B.md]] |
| ... | ... | @@ -21,22 +18,21 @@ nocite: | |
| 21 | 18 | |
| 22 | 19 | ## Mutation incidence in large patient cohorts (GAMBL reanalysis) |
| 23 | 20 | |
| 24 | -|Entity|source |frequency (%)| |
|
| 25 | -|:------:|:---------------------:|:-------------:| |
|
| 26 | -|BL |GAMBL genomes+capture|1.39 | |
|
| 27 | -|BL |Thomas cohort | NA | |
|
| 28 | -|BL |Panea cohort | NA | |
|
| 21 | +### BL |
|
| 22 | +[[include:tables/BL_FAM129B.md]] |
|
| 29 | 23 | |
| 30 | -## Mutation pattern and selective pressure estimates |
|
| 31 | - |
|
| 32 | -|Entity|aSHM|Significant selection|dN/dS (missense)|dN/dS (nonsense)| |
|
| 33 | -|:------:|:----:|:---------------------:|:----------------:|:----------------:| |
|
| 34 | -|BL |No |No |0.948 | 0.000 | |
|
| 35 | -|DLBCL |No |No |0.000 |13.541 | |
|
| 36 | -|FL |No |No |2.483 | 0.000 | |
|
| 24 | +### DLBCL |
|
| 25 | +[[include:tables/DLBCL_FAM129B.md]] |
|
| 37 | 26 | |
| 27 | +### FL |
|
| 28 | +[[include:tables/FL_FAM129B.md]] |
|
| 38 | 29 | |
| 30 | +## Mutation pattern and selective pressure estimates |
|
| 39 | 31 | |
| 32 | +[[include:tables/dnds_FAM129B.md]] |
|
| 40 | 33 | |
| 41 | 34 | [[include:browser_FAM129B.md]] |
| 42 | 35 | |
| 36 | +[[include:tables/mermaid_FAM129B.md]] |
|
| 37 | + |
|
| 38 | +## References |
TBC1D4.md
| ... | ... | @@ -39,6 +39,6 @@ nocite: | |
| 39 | 39 | <!-- ORIGIN: arthurGenomewideDiscoverySomatic2018 --> |
| 40 | 40 | <!-- DLBCL: arthurGenomewideDiscoverySomatic2018 --> |
| 41 | 41 | |
| 42 | -[[include:mermaid_TBC1D4.md]] |
|
| 42 | +[[include:tables/mermaid_TBC1D4.md]] |
|
| 43 | 43 | |
| 44 | 44 | ## References |