3d5042a846d2c4b98805416de06982295e1df2c7
DLBCL_genes.md
| ... | ... | @@ -95,7 +95,7 @@ link-citations: true |
| 95 | 95 | |[MYD88](MYD88)|1|[Ngo et al](papers/ngoOncogenicallyActiveMYD882011a)[@ngoOncogenicallyActiveMYD882011a]|[@yanBCRTLRSignaling2012a]| |
| 96 | 96 | |[NFKBIA](NFKBIA)|1|[Lake et al](papers/lakeMutationsNFKBIAEncoding2009)[@lakeMutationsNFKBIAEncoding2009]|[@wienandGenomicAnalysesFlowsorted2019b; @russler-germainMutationsAssociatedProgression2023b]| |
| 97 | 97 | |[NFKBIE](NFKBIE)|1|[Morin et al](papers/morinGeneticLandscapesRelapsed2016)[@morinGeneticLandscapesRelapsed2016]|[@mansouriFrequentNFKBIEDeletions2016; @pararajalingamCodingNoncodingDrivers2020]| |
| 98 | -|[NFKBIZ](NFKBIZ)|1, noncoding|[Morin et al](papers/morinGeneticLandscapesRelapsed2016)[@morinGeneticLandscapesRelapsed2016]|| |
|
| 98 | +|[NFKBIZ](NFKBIZ)|1|[Morin et al](papers/morinGeneticLandscapesRelapsed2016)[@morinGeneticLandscapesRelapsed2016]|| |
|
| 99 | 99 | |[NOL9](NOL9)|1|[Schmitz et al](papers/schmitzGeneticsPathogenesisDiffuse2018a)[@schmitzGeneticsPathogenesisDiffuse2018a]|[@spinaGeneticsNodalMarginal2016b]| |
| 100 | 100 | |[NOTCH1](NOTCH1)|1|[Pasqualucci et al](papers/pasqualucciAnalysisCodingGenome2011)[@pasqualucciAnalysisCodingGenome2011]|[@rossiCodingGenomeSplenic2012c; @beaLandscapeSomaticMutations2013; @loveGeneticLandscapeMutations2012]| |
| 101 | 101 | |[NOTCH2](NOTCH2)|1|[Troen et al](papers/troenNOTCH2MutationsMarginal2008)[@troenNOTCH2MutationsMarginal2008]|[@paneaWholeGenomeLandscape2019; @rossiCodingGenomeSplenic2012c; @beaLandscapeSomaticMutations2013]| |
| ... | ... | @@ -152,15 +152,15 @@ link-citations: true |
| 152 | 152 | |-|:-:|:-:|:--|:-| |
| 153 | 153 | |1|[ABI3BP](ABI3BP)|2|[Morin et al](papers/morinMutationalStructuralAnalysis2013)||[@morinMutationalStructuralAnalysis2013]|| |
| 154 | 154 | |2|[ADAMTS1](ADAMTS1)|2|[Hubschmann et al](papers/hubschmannMutationalMechanismsShaping2021b)[@hubschmannMutationalMechanismsShaping2021b]|| |
| 155 | -|3|[AICDA](AICDA)|2, aSHM|[Arthur et al](papers/arthurGenomewideDiscoverySomatic2018)[@arthurGenomewideDiscoverySomatic2018]|| |
|
| 155 | +|3|[AICDA](AICDA)|2|[Arthur et al](papers/arthurGenomewideDiscoverySomatic2018)[@arthurGenomewideDiscoverySomatic2018]|| |
|
| 156 | 156 | |4|[ANKRD12](ANKRD12)|2|[Hubschmann et al](papers/hubschmannMutationalMechanismsShaping2021b)[@hubschmannMutationalMechanismsShaping2021b]|| |
| 157 | 157 | |5|[ARID5B](ARID5B)|2|[Reddy et al](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|[@gomezUltraDeepSequencingReveals2023]| |
| 158 | 158 | |6|[ATR](ATR)|2|[Reddy et al](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|| |
| 159 | -|7|[BCL11A](BCL11A)|2, aSHM||| |
|
| 159 | +|7|[BCL11A](BCL11A)|2||| |
|
| 160 | 160 | |8|[BCOR](BCOR)|2||[@nadeuGenomicEpigenomicInsights2020b; @jalladesExomeSequencingIdentifies2017]| |
| 161 | -|9|[BCR](BCR)|2, aSHM|[Lohr et al](papers/lohrDiscoveryPrioritizationSomatic2012a)[@lohrDiscoveryPrioritizationSomatic2012a]|| |
|
| 162 | -|10|[BIRC3](BIRC3)|2, aSHM|[Arthur et al](papers/arthurGenomewideDiscoverySomatic2018)[@arthurGenomewideDiscoverySomatic2018]|[@beaLandscapeSomaticMutations2013; @rossiAlterationBIRC3Multiple2011a; @dunsCharacterizationDLBCLPMBL2021b]| |
|
| 163 | -|11|[BLK](BLK)|2, aSHM||| |
|
| 161 | +|9|[BCR](BCR)|2|[Lohr et al](papers/lohrDiscoveryPrioritizationSomatic2012a)[@lohrDiscoveryPrioritizationSomatic2012a]|| |
|
| 162 | +|10|[BIRC3](BIRC3)|2|[Arthur et al](papers/arthurGenomewideDiscoverySomatic2018)[@arthurGenomewideDiscoverySomatic2018]|[@beaLandscapeSomaticMutations2013; @rossiAlterationBIRC3Multiple2011a; @dunsCharacterizationDLBCLPMBL2021b]| |
|
| 163 | +|11|[BLK](BLK)|2||| |
|
| 164 | 164 | |12|[BRINP3](BRINP3)|2|[Reddy et al](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|| |
| 165 | 165 | |13|[BTBD3](BTBD3)|2|[Reddy et al](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|| |
| 166 | 166 | |14|[CADPS2](CADPS2)|2|[Hubschmann et al](papers/hubschmannMutationalMechanismsShaping2021b)[@hubschmannMutationalMechanismsShaping2021b]|| |
| ... | ... | @@ -168,10 +168,10 @@ link-citations: true |
| 168 | 168 | |16|[CD22](CD22)|2|[Reddy et al](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|| |
| 169 | 169 | |17|[CD274](CD274)|2|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]|| |
| 170 | 170 | |18|[CD36](CD36)|2|[Pasqualucci et al](papers/pasqualucciAnalysisCodingGenome2011)[@pasqualucciAnalysisCodingGenome2011]|| |
| 171 | -|19|[CD44](CD44)|2, aSHM|[Arthur et al](papers/arthurGenomewideDiscoverySomatic2018)[@arthurGenomewideDiscoverySomatic2018]|| |
|
| 172 | -|20|[CD74](CD74)|2, aSHM|[Arthur et al](papers/arthurGenomewideDiscoverySomatic2018)[@arthurGenomewideDiscoverySomatic2018]|| |
|
| 171 | +|19|[CD44](CD44)|2|[Arthur et al](papers/arthurGenomewideDiscoverySomatic2018)[@arthurGenomewideDiscoverySomatic2018]|| |
|
| 172 | +|20|[CD74](CD74)|2|[Arthur et al](papers/arthurGenomewideDiscoverySomatic2018)[@arthurGenomewideDiscoverySomatic2018]|| |
|
| 173 | 173 | |21|[CDH9](CDH9)|2|[Morin et al](papers/morinMutationalStructuralAnalysis2013)[@morinMutationalStructuralAnalysis2013]|| |
| 174 | -|22|[CIITA](CIITA)|2, aSHM|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]|[@mottokGenomicAlterationsCIITA2015b]| |
|
| 174 | +|22|[CIITA](CIITA)|2|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)[@morinFrequentMutationHistonemodifying2011]|[@mottokGenomicAlterationsCIITA2015b]| |
|
| 175 | 175 | |23|[CNOT2](CNOT2)|2|[Hubschmann et al](papers/hubschmannMutationalMechanismsShaping2021b)[@hubschmannMutationalMechanismsShaping2021b]|| |
| 176 | 176 | |24|[CNTNAP5](CNTNAP5)|2|[Morin et al](papers/morinMutationalStructuralAnalysis2013)[@morinMutationalStructuralAnalysis2013]|| |
| 177 | 177 | |25|[COQ7](COQ7)|2|[Chapuy et al](papers/chapuyMolecularSubtypesDiffuse2018b)[@chapuyMolecularSubtypesDiffuse2018b]|| |
| ... | ... | @@ -183,15 +183,15 @@ link-citations: true |
| 183 | 183 | |31|[DNM2](DNM2)|2|[Hubschmann et al](papers/hubschmannMutationalMechanismsShaping2021b)[@hubschmannMutationalMechanismsShaping2021b]|| |
| 184 | 184 | |32|[DOCK1](DOCK1)|2|[Chapuy et al](papers/chapuyMolecularSubtypesDiffuse2018b)[@chapuyMolecularSubtypesDiffuse2018b]|| |
| 185 | 185 | |33|[DSG4](DSG4)|2|[Morin et al](papers/morinMutationalStructuralAnalysis2013)[@morinMutationalStructuralAnalysis2013]|| |
| 186 | -|34|[EIF2AK3](EIF2AK3)|2, aSHM||| |
|
| 187 | -|35|[EZR](EZR)|2, aSHM||[@deschGenotypingCirculatingTumor2020]| |
|
| 188 | -|36|[FAM102A](FAM102A)|2, aSHM||| |
|
| 189 | -|37|[FANK1](FANK1)|2, aSHM||| |
|
| 186 | +|34|[EIF2AK3](EIF2AK3)|2||| |
|
| 187 | +|35|[EZR](EZR)|2||[@deschGenotypingCirculatingTumor2020]| |
|
| 188 | +|36|[FAM102A](FAM102A)|2||| |
|
| 189 | +|37|[FANK1](FANK1)|2||| |
|
| 190 | 190 | |38|[FAT4](FAT4)|2|[Morin et al](papers/morinMutationalStructuralAnalysis2013)[@morinMutationalStructuralAnalysis2013]|[@parryWholeExomeSequencing2013; @zhangGenomicLandscapeMantle2014]| |
| 191 | -|39|[FCRL3](FCRL3)|2, aSHM||| |
|
| 192 | -|40|[FNBP1](FNBP1)|2, aSHM||| |
|
| 191 | +|39|[FCRL3](FCRL3)|2||| |
|
| 192 | +|40|[FNBP1](FNBP1)|2||| |
|
| 193 | 193 | |41|[FOXC1](FOXC1)|2|[Schmitz et al](papers/schmitzGeneticsPathogenesisDiffuse2018a)[@schmitzGeneticsPathogenesisDiffuse2018a]|| |
| 194 | -|42|[FOXP1](FOXP1)|2, aSHM|[Reddy et al](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|| |
|
| 194 | +|42|[FOXP1](FOXP1)|2|[Reddy et al](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|| |
|
| 195 | 195 | |43|[FUBP1](FUBP1)|2|[Reddy et al](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|| |
| 196 | 196 | |44|[GABRA1](GABRA1)|2|[Lohr et al](papers/lohrDiscoveryPrioritizationSomatic2012a)[@lohrDiscoveryPrioritizationSomatic2012a]|| |
| 197 | 197 | |45|[GABRA2](GABRA2)|2|[Chapuy et al](papers/chapuyMolecularSubtypesDiffuse2018b)[@chapuyMolecularSubtypesDiffuse2018b]|| |
| ... | ... | @@ -200,7 +200,7 @@ link-citations: true |
| 200 | 200 | |48|[GSG2](GSG2)|2|[Schmitz et al](papers/schmitzGeneticsPathogenesisDiffuse2018a)[@schmitzGeneticsPathogenesisDiffuse2018a]|| |
| 201 | 201 | |49|[H1FOO](H1FOO)|2|[Lohr et al](papers/lohrDiscoveryPrioritizationSomatic2012a)[@lohrDiscoveryPrioritizationSomatic2012a]|| |
| 202 | 202 | |50|[HDAC7](HDAC7)|2|[Morin et al](papers/morinMutationalStructuralAnalysis2013)[@morinMutationalStructuralAnalysis2013]|| |
| 203 | -|51|[HIST1H2AG](HIST1H2AG)|2, aSHM|[Morin et al](papers/morinMutationalStructuralAnalysis2013)[@morinMutationalStructuralAnalysis2013]|[@rossiCodingGenomeSplenic2012c; @krysiakRecurrentSomaticMutations2017b; @paneaWholeGenomeLandscape2019]| |
|
| 203 | +|51|[HIST1H2AG](HIST1H2AG)|2|[Morin et al](papers/morinMutationalStructuralAnalysis2013)[@morinMutationalStructuralAnalysis2013]|[@rossiCodingGenomeSplenic2012c; @krysiakRecurrentSomaticMutations2017b; @paneaWholeGenomeLandscape2019]| |
|
| 204 | 204 | |52|[HIST1H2AL](HIST1H2AL)|2|[Lohr et al](papers/lohrDiscoveryPrioritizationSomatic2012a)[@lohrDiscoveryPrioritizationSomatic2012a]|| |
| 205 | 205 | |53|[HIST1H2BO](HIST1H2BO)|2|[Lohr et al](papers/lohrDiscoveryPrioritizationSomatic2012a)[@lohrDiscoveryPrioritizationSomatic2012a]|| |
| 206 | 206 | |54|[HLA-DMA](HLA-DMA)|2||| |
| ... | ... | @@ -208,13 +208,13 @@ link-citations: true |
| 208 | 208 | |56|[HNRNPH1](HNRNPH1)|2, noncoding|[Pararajalingam et al](papers/pararajalingamCodingNoncodingDrivers2020)[@pararajalingamCodingNoncodingDrivers2020]|| |
| 209 | 209 | |57|[ID3](ID3)|2|[Schmitz et al](papers/schmitzBurkittLymphomaPathogenesis2012)[@schmitzBurkittLymphomaPathogenesis2012]|[@spinaGeneticsNodalMarginal2016b; @richterRecurrentMutationID32012a]| |
| 210 | 210 | |58|[IFNGR1](IFNGR1)|2|[Morin et al](papers/morinMutationalStructuralAnalysis2013)[@morinMutationalStructuralAnalysis2013]|| |
| 211 | -|59|[IGLL5](IGLL5)|2, aSHM||[@paneaWholeGenomeLandscape2019; @deschGenotypingCirculatingTumor2020; @russler-germainMutationsAssociatedProgression2023b]| |
|
| 211 | +|59|[IGLL5](IGLL5)|2||[@paneaWholeGenomeLandscape2019; @deschGenotypingCirculatingTumor2020; @russler-germainMutationsAssociatedProgression2023b]| |
|
| 212 | 212 | |60|[IKBKB](IKBKB)|2|[Reddy et al](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|[@wienandGenomicAnalysesFlowsorted2019b; @rossiAlterationBIRC3Multiple2011a]| |
| 213 | 213 | |61|[IKBKE](IKBKE)|2|[Hubschmann et al](papers/hubschmannMutationalMechanismsShaping2021b)[@hubschmannMutationalMechanismsShaping2021b]|| |
| 214 | 214 | |62|[IL16](IL16)|2||| |
| 215 | 215 | |63|[IL6](IL6)|2|[Chapuy et al](papers/chapuyMolecularSubtypesDiffuse2018b)[@chapuyMolecularSubtypesDiffuse2018b]|| |
| 216 | 216 | |64|[INO80](INO80)|2|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|| |
| 217 | -|65|[IRF1](IRF1)|2, aSHM|[Hubschmann et al](papers/hubschmannMutationalMechanismsShaping2021b)[@hubschmannMutationalMechanismsShaping2021b]|| |
|
| 217 | +|65|[IRF1](IRF1)|2|[Hubschmann et al](papers/hubschmannMutationalMechanismsShaping2021b)[@hubschmannMutationalMechanismsShaping2021b]|| |
|
| 218 | 218 | |66|[JAK1](JAK1)|2|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|[@mottokIntegrativeGenomicAnalysis2019b]| |
| 219 | 219 | |67|[JAK3](JAK3)|2|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|| |
| 220 | 220 | |68|[JUNB](JUNB)|2|[Reddy et al](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|[@mottokIntegrativeGenomicAnalysis2019b]| |
| ... | ... | @@ -222,39 +222,39 @@ link-citations: true |
| 222 | 222 | |70|[KLHL21](KLHL21)|2|[Schmitz et al](papers/schmitzGeneticsPathogenesisDiffuse2018a)[@schmitzGeneticsPathogenesisDiffuse2018a]|| |
| 223 | 223 | |71|[KRTAP5-5](KRTAP5-5)|2|[Lohr et al](papers/lohrDiscoveryPrioritizationSomatic2012a)[@lohrDiscoveryPrioritizationSomatic2012a]|| |
| 224 | 224 | |72|[LAMA5](LAMA5)|2|[Schmitz et al](papers/schmitzGeneticsPathogenesisDiffuse2018a)[@schmitzGeneticsPathogenesisDiffuse2018a]|| |
| 225 | -|73|[LAPTM5](LAPTM5)|2, aSHM||[@hubschmannMutationalMechanismsShaping2021b]| |
|
| 226 | -|74|[LPP](LPP)|2, aSHM|[Arthur et al](papers/arthurGenomewideDiscoverySomatic2018)[@arthurGenomewideDiscoverySomatic2018]|| |
|
| 225 | +|73|[LAPTM5](LAPTM5)|2||[@hubschmannMutationalMechanismsShaping2021b]| |
|
| 226 | +|74|[LPP](LPP)|2|[Arthur et al](papers/arthurGenomewideDiscoverySomatic2018)[@arthurGenomewideDiscoverySomatic2018]|| |
|
| 227 | 227 | |75|[LRP12](LRP12)|2|[Hubschmann et al](papers/hubschmannMutationalMechanismsShaping2021b)[@hubschmannMutationalMechanismsShaping2021b]|| |
| 228 | 228 | |76|[LRRN3](LRRN3)|2|[Morin et al](papers/morinMutationalStructuralAnalysis2013)[@morinMutationalStructuralAnalysis2013]|[@sarkozyMutationalLandscapeGray2021a]| |
| 229 | 229 | |77|[LYN](LYN)|2|[Chapuy et al](papers/chapuyMolecularSubtypesDiffuse2018b)[@chapuyMolecularSubtypesDiffuse2018b]|| |
| 230 | 230 | |78|[MAGT1](MAGT1)|2|[Reddy et al](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|| |
| 231 | -|79|[MALAT1](MALAT1)|2, aSHM|[Arthur et al](papers/arthurGenomewideDiscoverySomatic2018)[@arthurGenomewideDiscoverySomatic2018]|| |
|
| 231 | +|79|[MALAT1](MALAT1)|2|[Arthur et al](papers/arthurGenomewideDiscoverySomatic2018)[@arthurGenomewideDiscoverySomatic2018]|| |
|
| 232 | 232 | |80|[MAP2K1](MAP2K1)|2|[Shin et al](papers/shinBRAFV600EMAP2K12015)[@shinBRAFV600EMAP2K12015]|[@louissaintPediatrictypeNodalFollicular2016a]| |
| 233 | 233 | |81|[MCL1](MCL1)|2|[Reddy et al](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|[@paneaWholeGenomeLandscape2019; @dunsCharacterizationDLBCLPMBL2021b]| |
| 234 | 234 | |82|[MECOM](MECOM)|2|[Reddy et al](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|| |
| 235 | 235 | |83|[MET](MET)|2|[Reddy et al](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|| |
| 236 | -|84|[MIR142](MIR142)|2, aSHM|[Kwanhian et al](papers/kwanhianMicroRNA142Mutated202012b)[@kwanhianMicroRNA142Mutated202012b]|[@grandeGenomewideDiscoverySomatic2019]| |
|
| 237 | -|85|[MIR155HG](MIR155HG)|2, aSHM||| |
|
| 236 | +|84|[MIR142](MIR142)|2|[Kwanhian et al](papers/kwanhianMicroRNA142Mutated202012b)[@kwanhianMicroRNA142Mutated202012b]|[@grandeGenomewideDiscoverySomatic2019]| |
|
| 237 | +|85|[MIR155HG](MIR155HG)|2||| |
|
| 238 | 238 | |86|[MPDZ](MPDZ)|2|[Morin et al](papers/morinMutationalStructuralAnalysis2013)[@morinMutationalStructuralAnalysis2013]|[@reichelFlowSortingExome2015a]| |
| 239 | 239 | |87|[MSH6](MSH6)|2|[Reddy et al](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|| |
| 240 | 240 | |88|[MYBPC2](MYBPC2)|2|[Schmitz et al](papers/schmitzGeneticsPathogenesisDiffuse2018a)[@schmitzGeneticsPathogenesisDiffuse2018a]|| |
| 241 | -|89|[MYO1E](MYO1E)|2, aSHM||| |
|
| 241 | +|89|[MYO1E](MYO1E)|2||| |
|
| 242 | 242 | |90|[MYOM2](MYOM2)|2|[Pasqualucci et al](papers/pasqualucciAnalysisCodingGenome2011)[@pasqualucciAnalysisCodingGenome2011]|| |
| 243 | 243 | |91|[NAV1](NAV1)|2|[Chapuy et al](papers/chapuyMolecularSubtypesDiffuse2018b)[@chapuyMolecularSubtypesDiffuse2018b]|| |
| 244 | -|92|[NCOA3](NCOA3)|2, aSHM||| |
|
| 244 | +|92|[NCOA3](NCOA3)|2||| |
|
| 245 | 245 | |93|[NCOR2](NCOR2)|2||[@spinaGeneticsNodalMarginal2016b; @schmitzBurkittLymphomaPathogenesis2012; @sarkozyMutationalLandscapeGray2021a]| |
| 246 | -|94|[NEAT1](NEAT1)|2, aSHM|[Arthur et al](papers/arthurGenomewideDiscoverySomatic2018)[@arthurGenomewideDiscoverySomatic2018]|| |
|
| 246 | +|94|[NEAT1](NEAT1)|2|[Arthur et al](papers/arthurGenomewideDiscoverySomatic2018)[@arthurGenomewideDiscoverySomatic2018]|| |
|
| 247 | 247 | |95|[NF1](NF1)|2|[Reddy et al](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|| |
| 248 | 248 | |96|[NFKB1](NFKB1)|2||| |
| 249 | 249 | |97|[NLRC5](NLRC5)|2||| |
| 250 | 250 | |98|[NLRP5](NLRP5)|2|[Morin et al](papers/morinMutationalStructuralAnalysis2013)[@morinMutationalStructuralAnalysis2013]|| |
| 251 | 251 | |99|[ODZ3](ODZ3)|2|[Morin et al](papers/morinMutationalStructuralAnalysis2013)[@morinMutationalStructuralAnalysis2013]|| |
| 252 | 252 | |100|[OR6K3](OR6K3)|2|[Lohr et al](papers/lohrDiscoveryPrioritizationSomatic2012a)[@lohrDiscoveryPrioritizationSomatic2012a]|| |
| 253 | -|101|[P2RX5](P2RX5)|2, aSHM|[Morin et al](papers/morinMutationalStructuralAnalysis2013)[@morinMutationalStructuralAnalysis2013]|| |
|
| 253 | +|101|[P2RX5](P2RX5)|2|[Morin et al](papers/morinMutationalStructuralAnalysis2013)[@morinMutationalStructuralAnalysis2013]|| |
|
| 254 | 254 | |102|[PAPOLG](PAPOLG)|2|[Schmitz et al](papers/schmitzGeneticsPathogenesisDiffuse2018a)[@schmitzGeneticsPathogenesisDiffuse2018a]|| |
| 255 | 255 | |103|[PASD1](PASD1)|2|[Lohr et al](papers/lohrDiscoveryPrioritizationSomatic2012a)[@lohrDiscoveryPrioritizationSomatic2012a]|| |
| 256 | 256 | |104|[PASK](PASK)|2|[Morin et al](papers/morinMutationalStructuralAnalysis2013)[@morinMutationalStructuralAnalysis2013]|| |
| 257 | -|105|[PAX5](PAX5)|2, aSHM|[Pasqualucci et al](papers/pasqualucciHypermutationMultipleProtooncogenes2001a)[@pasqualucciHypermutationMultipleProtooncogenes2001a]|| |
|
| 257 | +|105|[PAX5](PAX5)|2|[Pasqualucci et al](papers/pasqualucciHypermutationMultipleProtooncogenes2001a)[@pasqualucciHypermutationMultipleProtooncogenes2001a]|| |
|
| 258 | 258 | |106|[PCBP1](PCBP1)|2||[@schmitzBurkittLymphomaPathogenesis2012]| |
| 259 | 259 | |107|[PCDHB11](PCDHB11)|2|[Morin et al](papers/morinMutationalStructuralAnalysis2013)[@morinMutationalStructuralAnalysis2013]|| |
| 260 | 260 | |108|[PCDHB6](PCDHB6)|2|[Lohr et al](papers/lohrDiscoveryPrioritizationSomatic2012a)[@lohrDiscoveryPrioritizationSomatic2012a]|| |
| ... | ... | @@ -267,21 +267,21 @@ link-citations: true |
| 267 | 267 | |115|[PRKCB](PRKCB)|2|[Morin et al](papers/morinMutationalStructuralAnalysis2013)[@morinMutationalStructuralAnalysis2013]|| |
| 268 | 268 | |116|[PRKDC](PRKDC)|2|[Schmitz et al](papers/schmitzGeneticsPathogenesisDiffuse2018a)[@schmitzGeneticsPathogenesisDiffuse2018a]|[@hubschmannMutationalMechanismsShaping2021b]| |
| 269 | 269 | |117|[PRPS1](PRPS1)|2|[Chapuy et al](papers/chapuyMolecularSubtypesDiffuse2018b)[@chapuyMolecularSubtypesDiffuse2018b]|| |
| 270 | -|118|[PTMA](PTMA)|2, aSHM||| |
|
| 271 | -|119|[PTPN1](PTPN1)|2, aSHM||[@gunawardanaRecurrentSomaticMutations2014c]| |
|
| 270 | +|118|[PTMA](PTMA)|2||| |
|
| 271 | +|119|[PTPN1](PTPN1)|2||[@gunawardanaRecurrentSomaticMutations2014c]| |
|
| 272 | 272 | |120|[PTPN6](PTPN6)|2|[Reddy et al](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|| |
| 273 | 273 | |121|[RAC2](RAC2)|2|[Hubschmann et al](papers/hubschmannMutationalMechanismsShaping2021b)[@hubschmannMutationalMechanismsShaping2021b]|[@paneaWholeGenomeLandscape2019]| |
| 274 | -|122|[RCC](RCC)|2, aSHM||| |
|
| 275 | -|123|[RFTN1](RFTN1)|2, aSHM|[Arthur et al](papers/arthurGenomewideDiscoverySomatic2018)[@arthurGenomewideDiscoverySomatic2018]|[@dunsCharacterizationDLBCLPMBL2021b]| |
|
| 274 | +|122|[RCC](RCC)|2||| |
|
| 275 | +|123|[RFTN1](RFTN1)|2|[Arthur et al](papers/arthurGenomewideDiscoverySomatic2018)[@arthurGenomewideDiscoverySomatic2018]|[@dunsCharacterizationDLBCLPMBL2021b]| |
|
| 276 | 276 | |124|[RFXAP](RFXAP)|2||| |
| 277 | -|125|[RHEX](RHEX)|2, aSHM||| |
|
| 278 | -|126|[RHOH](RHOH)|2, aSHM|[Pasqualucci et al](papers/pasqualucciHypermutationMultipleProtooncogenes2001a)[@pasqualucciHypermutationMultipleProtooncogenes2001a]|| |
|
| 279 | -|127|[RUBCNL](RUBCNL)|2, aSHM||| |
|
| 277 | +|125|[RHEX](RHEX)|2||| |
|
| 278 | +|126|[RHOH](RHOH)|2|[Pasqualucci et al](papers/pasqualucciHypermutationMultipleProtooncogenes2001a)[@pasqualucciHypermutationMultipleProtooncogenes2001a]|| |
|
| 279 | +|127|[RUBCNL](RUBCNL)|2||| |
|
| 280 | 280 | |128|[S1PR1](S1PR1)|2|[Lohr et al](papers/lohrDiscoveryPrioritizationSomatic2012a)[@lohrDiscoveryPrioritizationSomatic2012a]|[@pararajalingamCodingNoncodingDrivers2020]| |
| 281 | 281 | |129|[SAMD9L](SAMD9L)|2|[Morin et al](papers/morinMutationalStructuralAnalysis2013)[@morinMutationalStructuralAnalysis2013]|| |
| 282 | -|130|[SEL1L3](SEL1L3)|2, aSHM||| |
|
| 283 | -|131|[SEPTIN9](SEPTIN9)|2, aSHM||| |
|
| 284 | -|132|[SERPINA9](SERPINA9)|2, aSHM|[Arthur et al](papers/arthurGenomewideDiscoverySomatic2018)[@arthurGenomewideDiscoverySomatic2018]|| |
|
| 282 | +|130|[SEL1L3](SEL1L3)|2||| |
|
| 283 | +|131|[SEPTIN9](SEPTIN9)|2||| |
|
| 284 | +|132|[SERPINA9](SERPINA9)|2|[Arthur et al](papers/arthurGenomewideDiscoverySomatic2018)[@arthurGenomewideDiscoverySomatic2018]|| |
|
| 285 | 285 | |133|[SETD2](SETD2)|2|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|| |
| 286 | 286 | |134|[SETD5](SETD5)|2|[Reddy et al](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|[@tiacciPervasiveMutationsJAKSTAT2018b]| |
| 287 | 287 | |135|[SIAH2](SIAH2)|2|[Hubschmann et al](papers/hubschmannMutationalMechanismsShaping2021b)[@hubschmannMutationalMechanismsShaping2021b]|[@reichelFlowSortingExome2015a]| |
| ... | ... | @@ -290,13 +290,13 @@ link-citations: true |
| 290 | 290 | |138|[SLITRK6](SLITRK6)|2|[Lohr et al](papers/lohrDiscoveryPrioritizationSomatic2012a)[@lohrDiscoveryPrioritizationSomatic2012a]|| |
| 291 | 291 | |139|[SRPX](SRPX)|2|[Lohr et al](papers/lohrDiscoveryPrioritizationSomatic2012a)[@lohrDiscoveryPrioritizationSomatic2012a]|| |
| 292 | 292 | |140|[SRRM2](SRRM2)|2|[Morin et al](papers/morinMutationalStructuralAnalysis2013)[@morinMutationalStructuralAnalysis2013]|[@russler-germainMutationsAssociatedProgression2023b]| |
| 293 | -|141|[ST6GAL1](ST6GAL1)|2, aSHM|[Arthur et al](papers/arthurGenomewideDiscoverySomatic2018)[@arthurGenomewideDiscoverySomatic2018]|| |
|
| 293 | +|141|[ST6GAL1](ST6GAL1)|2|[Arthur et al](papers/arthurGenomewideDiscoverySomatic2018)[@arthurGenomewideDiscoverySomatic2018]|| |
|
| 294 | 294 | |142|[STAT5B](STAT5B)|2|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|[@tiacciPervasiveMutationsJAKSTAT2018b]| |
| 295 | 295 | |143|[SYN2](SYN2)|2|[Lohr et al](papers/lohrDiscoveryPrioritizationSomatic2012a)[@lohrDiscoveryPrioritizationSomatic2012a]|| |
| 296 | 296 | |144|[SYPL1](SYPL1)|2|[Morin et al](papers/morinMutationalStructuralAnalysis2013)[@morinMutationalStructuralAnalysis2013]|| |
| 297 | 297 | |145|[TAP1](TAP1)|2|[Schmitz et al](papers/schmitzGeneticsPathogenesisDiffuse2018a)[@schmitzGeneticsPathogenesisDiffuse2018a]|| |
| 298 | -|146|[TBC1D4](TBC1D4)|2, aSHM|[Arthur et al](papers/arthurGenomewideDiscoverySomatic2018)[@arthurGenomewideDiscoverySomatic2018]|| |
|
| 299 | -|147|[TCL1A](TCL1A)|2, aSHM||[@grandeGenomewideDiscoverySomatic2019]| |
|
| 298 | +|146|[TBC1D4](TBC1D4)|2|[Arthur et al](papers/arthurGenomewideDiscoverySomatic2018)[@arthurGenomewideDiscoverySomatic2018]|| |
|
| 299 | +|147|[TCL1A](TCL1A)|2||[@grandeGenomewideDiscoverySomatic2019]| |
|
| 300 | 300 | |148|[TGFBR2](TGFBR2)|2|[Reddy et al](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|| |
| 301 | 301 | |149|[TIPARP](TIPARP)|2|[Reddy et al](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|| |
| 302 | 302 | |150|[TLR2](TLR2)|2|[Chapuy et al](papers/chapuyMolecularSubtypesDiffuse2018b)[@chapuyMolecularSubtypesDiffuse2018b]|[@beaLandscapeSomaticMutations2013]| |
| ... | ... | @@ -305,15 +305,15 @@ link-citations: true |
| 305 | 305 | |153|[TRAF3](TRAF3)|2|[Pasqualucci et al](papers/pasqualucciAnalysisCodingGenome2011)[@pasqualucciAnalysisCodingGenome2011]|[@rossiAlterationBIRC3Multiple2011a; @ottoGeneticLesionsTRAF32012a]| |
| 306 | 306 | |154|[TRAF6](TRAF6)|2|[Hubschmann et al](papers/hubschmannMutationalMechanismsShaping2021b)[@hubschmannMutationalMechanismsShaping2021b]|| |
| 307 | 307 | |155|[TRIP12](TRIP12)|2||| |
| 308 | -|156|[UBE2J1](UBE2J1)|2, aSHM||| |
|
| 308 | +|156|[UBE2J1](UBE2J1)|2||| |
|
| 309 | 309 | |157|[UBR5](UBR5)|2|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|[@pararajalingamCodingNoncodingDrivers2020]| |
| 310 | 310 | |158|[UNC5B](UNC5B)|2|[Hubschmann et al](papers/hubschmannMutationalMechanismsShaping2021b)[@hubschmannMutationalMechanismsShaping2021b]|| |
| 311 | 311 | |159|[UNC5D](UNC5D)|2|[Lohr et al](papers/lohrDiscoveryPrioritizationSomatic2012a)[@lohrDiscoveryPrioritizationSomatic2012a]|| |
| 312 | 312 | |160|[WDFY3](WDFY3)|2|[Morin et al](papers/morinMutationalStructuralAnalysis2013)[@morinMutationalStructuralAnalysis2013]|| |
| 313 | 313 | |161|[WNK1](WNK1)|2|[Hubschmann et al](papers/hubschmannMutationalMechanismsShaping2021b)[@hubschmannMutationalMechanismsShaping2021b]|[@thomasGeneticSubgroupsInform2023; @jalladesExomeSequencingIdentifies2017]| |
| 314 | -|162|[XBP1](XBP1)|2, aSHM||| |
|
| 314 | +|162|[XBP1](XBP1)|2||| |
|
| 315 | 315 | |163|[YY1](YY1)|2|[Reddy et al](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|| |
| 316 | -|164|[ZCCHC7](ZCCHC7)|2, aSHM|[Arthur et al](papers/arthurGenomewideDiscoverySomatic2018)[@arthurGenomewideDiscoverySomatic2018]|| |
|
| 316 | +|164|[ZCCHC7](ZCCHC7)|2|[Arthur et al](papers/arthurGenomewideDiscoverySomatic2018)[@arthurGenomewideDiscoverySomatic2018]|| |
|
| 317 | 317 | |165|[ZEB2](ZEB2)|2|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)[@zhangGeneticHeterogeneityDiffuse2013]|| |
| 318 | 318 | |166|[ZFX](ZFX)|2|[Reddy et al](papers/reddyGeneticFunctionalDrivers2017)[@reddyGeneticFunctionalDrivers2017]|| |
| 319 | 319 | |167|[ZNF217](ZNF217)|2|[Hubschmann et al](papers/hubschmannMutationalMechanismsShaping2021b)[@hubschmannMutationalMechanismsShaping2021b]|[@reichelFlowSortingExome2015a]| |