CARD11.md
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@@ -37,25 +37,7 @@ The functional effect of CARD11 mutations in DLBCL was explored in the original
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[[include:tables/dnds_CARD11.md]]
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-## CARD11 Hotspots
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-
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-| Chromosome |Coordinate (hg19) | ref>alt | HGVSp |
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- | :---:| :---: | :--: | :---: |
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-| chr7 | 2979522 | T>C | E242G |
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-| chr7 | 2979521 | T>A | E242D |
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-| chr7 | 2979513 | A>G | L245P |
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-| chr7 | 2979508 | T>C | R247G |
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-| chr7 | 2979501 | T>G | Q249P |
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-| chr7 | 2979499 | A>G | S250P |
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-| chr7 | 2979495 | A>G | L251P |
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-| chr7 | 2979493 | T>A | K252* |
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-| chr7 | 2979486 | T>C | K254R |
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-| chr7 | 2979481 | C>T | D256N |
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-| chr7 | 2977614 | T>C | D357G |
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-| chr7 | 2977614 | T>A | D357V |
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-| chr7 | 2977604 | C>A | M360I |
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-| chr7 | 2977602 | T>G | Y361S |
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-| chr7 | 2977602 | T>C | Y361C |
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+[[include:tables/hotspots_CARD11.md]]
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![Structure with HotMAPS hotspots](images/hotmaps_3d/CARD11_1.png)
tables/hotspots/hotspots_CARD11.md
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+# CARD11 Hotspots
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+
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+| Hugo_Symbol | Chromosome | Coordinate | DLBCL | FL | BL | HGVS |
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+| ------ | ------ | ------ | ------ | ------ | ------ | ------ |
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+| CARD11 | 7 | 2977613,2977614 | 13 | 18 | 0 | p.D357V |
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+| CARD11 | 7 | 2977613,2977614 | 13 | 18 | 0 | p.D357E |
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+| CARD11 | 7 | 2977613,2977614 | 13 | 18 | 0 | p.D357G |
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+| CARD11 | 7 | 2979559,2979558 | 19 | 2 | 2 | p.D230N |
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+| CARD11 | 7 | 2979559,2979558 | 19 | 2 | 2 | p.D230A |
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+| CARD11 | 7 | 2979495 | 10 | 8 | 0 | p.L251P |
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+| CARD11 | 7 | 2979501 | 4 | 5 | 1 | p.Q249P |
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+| CARD11 | 7 | 2979499 | 8 | 2 | 0 | p.S250P |
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+| CARD11 | 7 | 2979513 | 2 | 4 | 0 | p.L245P |
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+| CARD11 | 7 | 2977605,2977606,2977604 | 6 | 0 | 0 | p.M360V |
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+| CARD11 | 7 | 2977605,2977606,2977604 | 6 | 0 | 0 | p.M360I |
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+| CARD11 | 7 | 2977602,2977603 | 6 | 0 | 0 | p.Y361H |
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+| CARD11 | 7 | 2977602,2977603 | 6 | 0 | 0 | p.Y361S |
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+| CARD11 | 7 | 2977605,2977606,2977604 | 6 | 0 | 0 | p.M360K |
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+| CARD11 | 7 | 2977602,2977603 | 6 | 0 | 0 | p.Y361C |
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+| CARD11 | 7 | 2977602,2977603 | 6 | 0 | 0 | p.Y361D |
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+| CARD11 | 7 | 2979489 | 3 | 2 | 0 | p.L253P |
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+| CARD11 | 7 | 2979508 | 3 | 0 | 0 | p.R247G |
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+| CARD11 | 7 | 2979521,2979522 | 1 | 2 | 0 | p.E242D |
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+| CARD11 | 7 | 2979521,2979522 | 1 | 2 | 0 | p.E242G |
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+| CARD11 | 7 | 2979521,2979522 | 1 | 2 | 0 | p.E242del |
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+| CARD11 | 7 | 2979493 | 1 | 2 | 0 | p.K252* |
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+| CARD11 | 7 | 2979493 | 1 | 2 | 0 | p.K252E |
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+| CARD11 | 7 | 2979493 | 1 | 2 | 0 | p.K252_L253delinsM |
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+| CARD11 | 7 | 2979485,2979486 | 1 | 2 | 0 | p.K254N |
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+| CARD11 | 7 | 2979485,2979486 | 1 | 2 | 0 | p.K254R |
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+| CARD11 | 7 | 2979485,2979486 | 1 | 2 | 0 | p.K254_N255del |
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+| CARD11 | 7 | 2979481 | 0 | 1 | 0 | p.D256N |
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+| CARD11 | 7 | 2979483 | 0 | 1 | 0 | p.N255S |
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+| CARD11 | nan | nan | 1 | 0 | 0 | p.Q231_H234del |
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+| CARD11 | 7 | 2979543 | 0 | 1 | 0 | p.R235P |
tables/hotspots_CARD11.md
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+# CARD11 Hotspots
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+
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+| Hugo_Symbol | Chromosome | Coordinate | DLBCL | FL | BL | HGVS |
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+| ------ | ------ | ------ | ------ | ------ | ------ | ------ |
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+| CARD11 | 7 | 2977613,2977614 | 13 | 18 | 0 | p.D357V |
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+| CARD11 | 7 | 2977613,2977614 | 13 | 18 | 0 | p.D357E |
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+| CARD11 | 7 | 2977613,2977614 | 13 | 18 | 0 | p.D357G |
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+| CARD11 | 7 | 2979559,2979558 | 19 | 2 | 2 | p.D230N |
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+| CARD11 | 7 | 2979559,2979558 | 19 | 2 | 2 | p.D230A |
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+| CARD11 | 7 | 2979495 | 10 | 8 | 0 | p.L251P |
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+| CARD11 | 7 | 2979501 | 4 | 5 | 1 | p.Q249P |
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+| CARD11 | 7 | 2979499 | 8 | 2 | 0 | p.S250P |
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+| CARD11 | 7 | 2979513 | 2 | 4 | 0 | p.L245P |
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+| CARD11 | 7 | 2977605,2977606,2977604 | 6 | 0 | 0 | p.M360V |
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+| CARD11 | 7 | 2977605,2977606,2977604 | 6 | 0 | 0 | p.M360I |
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+| CARD11 | 7 | 2977602,2977603 | 6 | 0 | 0 | p.Y361H |
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+| CARD11 | 7 | 2977602,2977603 | 6 | 0 | 0 | p.Y361S |
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+| CARD11 | 7 | 2977605,2977606,2977604 | 6 | 0 | 0 | p.M360K |
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+| CARD11 | 7 | 2977602,2977603 | 6 | 0 | 0 | p.Y361C |
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+| CARD11 | 7 | 2977602,2977603 | 6 | 0 | 0 | p.Y361D |
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+| CARD11 | 7 | 2979489 | 3 | 2 | 0 | p.L253P |
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+| CARD11 | 7 | 2979508 | 3 | 0 | 0 | p.R247G |
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+| CARD11 | 7 | 2979521,2979522 | 1 | 2 | 0 | p.E242D |
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+| CARD11 | 7 | 2979521,2979522 | 1 | 2 | 0 | p.E242G |
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+| CARD11 | 7 | 2979521,2979522 | 1 | 2 | 0 | p.E242del |
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+| CARD11 | 7 | 2979493 | 1 | 2 | 0 | p.K252* |
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+| CARD11 | 7 | 2979493 | 1 | 2 | 0 | p.K252E |
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+| CARD11 | 7 | 2979493 | 1 | 2 | 0 | p.K252_L253delinsM |
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+| CARD11 | 7 | 2979485,2979486 | 1 | 2 | 0 | p.K254N |
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+| CARD11 | 7 | 2979485,2979486 | 1 | 2 | 0 | p.K254R |
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+| CARD11 | 7 | 2979485,2979486 | 1 | 2 | 0 | p.K254_N255del |
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+| CARD11 | 7 | 2979481 | 0 | 1 | 0 | p.D256N |
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+| CARD11 | 7 | 2979483 | 0 | 1 | 0 | p.N255S |
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+| CARD11 | nan | nan | 1 | 0 | 0 | p.Q231_H234del |
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+| CARD11 | 7 | 2979543 | 0 | 1 | 0 | p.R235P |