3f15c4b7f5c7be757e428366e9c2eef63ebc859a
papers/abateDistinctViralMutational2015a.md
| ... | ... | @@ -35,7 +35,7 @@ All other BL studies, BL Tier 2, 156 |
| 35 | 35 | |
| 36 | 36 | |New gene|BL tier| |
| 37 | 37 | |:-|:-:| |
| 38 | -|[CCNF](CCNF)|2 | |
|
| 38 | +|[CCNF](../CCNF)|2 | |
|
| 39 | 39 | |
| 40 | 40 | # Details |
| 41 | 41 |
papers/albuquerqueEnhancingKnowledgeDiscovery2017a.md
| ... | ... | @@ -35,9 +35,9 @@ All other DLBCL studies, DLBCL Tier 2, 198 |
| 35 | 35 | |
| 36 | 36 | |New gene|DLBCL tier| |
| 37 | 37 | |:-|:-:| |
| 38 | -|[BTK](BTK)|1 | |
|
| 39 | -|[TET2](TET2)|1 | |
|
| 40 | -|[TMSB4X](TMSB4X)|1 | |
|
| 38 | +|[BTK](../BTK)|1 | |
|
| 39 | +|[TET2](../TET2)|1 | |
|
| 40 | +|[TMSB4X](../TMSB4X)|1 | |
|
| 41 | 41 | |
| 42 | 42 | # Details |
| 43 | 43 |
papers/arthurGenomewideDiscoverySomatic2018.md
| ... | ... | @@ -35,26 +35,26 @@ All other DLBCL studies, DLBCL Tier 2, 186 |
| 35 | 35 | |
| 36 | 36 | |New gene|DLBCL tier| |
| 37 | 37 | |:-|:-:| |
| 38 | -|[AICDA](AICDA)|2 | |
|
| 39 | -|[BCL7A](BCL7A)|1 | |
|
| 40 | -|[BIRC3](BIRC3)|2 | |
|
| 41 | -|[CD44](CD44)|2 | |
|
| 42 | -|[CD74](CD74)|2 | |
|
| 43 | -|[ETV6](ETV6)|1 | |
|
| 44 | -|[GRHPR](GRHPR)|1 | |
|
| 45 | -|[LCOR](LCOR)|1 | |
|
| 46 | -|[LPP](LPP)|2 | |
|
| 47 | -|[MALAT1](MALAT1)|2 | |
|
| 48 | -|[MEF2C](MEF2C)|1 | |
|
| 49 | -|[NEAT1](NEAT1)|2 | |
|
| 50 | -|[OSBPL10](OSBPL10)|1 | |
|
| 51 | -|[PIM2](PIM2)|1 | |
|
| 52 | -|[RFTN1](RFTN1)|2 | |
|
| 53 | -|[SERPINA9](SERPINA9)|2 | |
|
| 54 | -|[ST6GAL1](ST6GAL1)|2 | |
|
| 55 | -|[TBC1D4](TBC1D4)|2 | |
|
| 56 | -|[ZC3H12A](ZC3H12A)|1 | |
|
| 57 | -|[ZCCHC7](ZCCHC7)|2 | |
|
| 38 | +|[AICDA](../AICDA)|2 | |
|
| 39 | +|[BCL7A](../BCL7A)|1 | |
|
| 40 | +|[BIRC3](../BIRC3)|2 | |
|
| 41 | +|[CD44](../CD44)|2 | |
|
| 42 | +|[CD74](../CD74)|2 | |
|
| 43 | +|[ETV6](../ETV6)|1 | |
|
| 44 | +|[GRHPR](../GRHPR)|1 | |
|
| 45 | +|[LCOR](../LCOR)|1 | |
|
| 46 | +|[LPP](../LPP)|2 | |
|
| 47 | +|[MALAT1](../MALAT1)|2 | |
|
| 48 | +|[MEF2C](../MEF2C)|1 | |
|
| 49 | +|[NEAT1](../NEAT1)|2 | |
|
| 50 | +|[OSBPL10](../OSBPL10)|1 | |
|
| 51 | +|[PIM2](../PIM2)|1 | |
|
| 52 | +|[RFTN1](../RFTN1)|2 | |
|
| 53 | +|[SERPINA9](../SERPINA9)|2 | |
|
| 54 | +|[ST6GAL1](../ST6GAL1)|2 | |
|
| 55 | +|[TBC1D4](../TBC1D4)|2 | |
|
| 56 | +|[ZC3H12A](../ZC3H12A)|1 | |
|
| 57 | +|[ZCCHC7](../ZCCHC7)|2 | |
|
| 58 | 58 | |
| 59 | 59 | # Details |
| 60 | 60 |
papers/barariaCathepsinAlterationsInduce2020c.md
| ... | ... | @@ -35,7 +35,7 @@ All other FL studies, FL Tier 2, 50 |
| 35 | 35 | |
| 36 | 36 | |New gene|FL tier| |
| 37 | 37 | |:-|:-:| |
| 38 | -|[CTSS](CTSS)|1 | |
|
| 38 | +|[CTSS](../CTSS)|1 | |
|
| 39 | 39 | |
| 40 | 40 | # Details |
| 41 | 41 |
papers/beaLandscapeSomaticMutations2013.md
| ... | ... | @@ -35,33 +35,33 @@ All other MCL studies, MCL Tier 2, 30 |
| 35 | 35 | |
| 36 | 36 | |New gene|MCL tier| |
| 37 | 37 | |:-|:-:| |
| 38 | -|[ABCA3](ABCA3)|2 | |
|
| 39 | -|[ABCC9](ABCC9)|2 | |
|
| 40 | -|[ATM](ATM)|1 | |
|
| 41 | -|[BIRC3](BIRC3)|1 | |
|
| 42 | -|[CCND1](CCND1)|1 | |
|
| 43 | -|[CHMP4C](CHMP4C)|2 | |
|
| 44 | -|[CRYBG3](CRYBG3)|2 | |
|
| 45 | -|[DCP1B](DCP1B)|2 | |
|
| 46 | -|[DLGAP2](DLGAP2)|2 | |
|
| 47 | -|[DNAJC6](DNAJC6)|2 | |
|
| 48 | -|[KCNC2](KCNC2)|2 | |
|
| 49 | -|[KIAA1671](KIAA1671)|2 | |
|
| 50 | -|[KMT2D](KMT2D)|1 | |
|
| 51 | -|[LUZP4](LUZP4)|2 | |
|
| 52 | -|[MEF2B](MEF2B)|1 | |
|
| 53 | -|[NOTCH1](NOTCH1)|1 | |
|
| 54 | -|[NOTCH2](NOTCH2)|1 | |
|
| 55 | -|[NSD2](NSD2)|1 | |
|
| 56 | -|[PCSK2](PCSK2)|2 | |
|
| 57 | -|[PDLIM3](PDLIM3)|2 | |
|
| 58 | -|[RGS4](RGS4)|2 | |
|
| 59 | -|[SLC17A6](SLC17A6)|2 | |
|
| 60 | -|[SP140](SP140)|1 | |
|
| 61 | -|[TLR2](TLR2)|1 | |
|
| 62 | -|[TNRC6B](TNRC6B)|2 | |
|
| 63 | -|[TP53](TP53)|1 | |
|
| 64 | -|[TRPM6](TRPM6)|2 | |
|
| 38 | +|[ABCA3](../ABCA3)|2 | |
|
| 39 | +|[ABCC9](../ABCC9)|2 | |
|
| 40 | +|[ATM](../ATM)|1 | |
|
| 41 | +|[BIRC3](../BIRC3)|1 | |
|
| 42 | +|[CCND1](../CCND1)|1 | |
|
| 43 | +|[CHMP4C](../CHMP4C)|2 | |
|
| 44 | +|[CRYBG3](../CRYBG3)|2 | |
|
| 45 | +|[DCP1B](../DCP1B)|2 | |
|
| 46 | +|[DLGAP2](../DLGAP2)|2 | |
|
| 47 | +|[DNAJC6](../DNAJC6)|2 | |
|
| 48 | +|[KCNC2](../KCNC2)|2 | |
|
| 49 | +|[KIAA1671](../KIAA1671)|2 | |
|
| 50 | +|[KMT2D](../KMT2D)|1 | |
|
| 51 | +|[LUZP4](../LUZP4)|2 | |
|
| 52 | +|[MEF2B](../MEF2B)|1 | |
|
| 53 | +|[NOTCH1](../NOTCH1)|1 | |
|
| 54 | +|[NOTCH2](../NOTCH2)|1 | |
|
| 55 | +|[NSD2](../NSD2)|1 | |
|
| 56 | +|[PCSK2](../PCSK2)|2 | |
|
| 57 | +|[PDLIM3](../PDLIM3)|2 | |
|
| 58 | +|[RGS4](../RGS4)|2 | |
|
| 59 | +|[SLC17A6](../SLC17A6)|2 | |
|
| 60 | +|[SP140](../SP140)|1 | |
|
| 61 | +|[TLR2](../TLR2)|1 | |
|
| 62 | +|[TNRC6B](../TNRC6B)|2 | |
|
| 63 | +|[TP53](../TP53)|1 | |
|
| 64 | +|[TRPM6](../TRPM6)|2 | |
|
| 65 | 65 | |
| 66 | 66 | # Details |
| 67 | 67 |
papers/bohleRoleEarlyBcell2013.md
| ... | ... | @@ -35,7 +35,7 @@ All other DLBCL studies, DLBCL Tier 2, 198 |
| 35 | 35 | |
| 36 | 36 | |New gene|DLBCL tier| |
| 37 | 37 | |:-|:-:| |
| 38 | -|[EBF1](EBF1)|1 | |
|
| 38 | +|[EBF1](../EBF1)|1 | |
|
| 39 | 39 | |
| 40 | 40 | # Details |
| 41 | 41 |
papers/braggioGenomicAnalysisMarginal2012.md
| ... | ... | @@ -35,7 +35,7 @@ All other MZL studies, MZL Tier 2, 74 |
| 35 | 35 | |
| 36 | 36 | |New gene|MZL tier| |
| 37 | 37 | |:-|:-:| |
| 38 | -|[ATM](ATM)|1 | |
|
| 38 | +|[ATM](../ATM)|1 | |
|
| 39 | 39 | |
| 40 | 40 | # Details |
| 41 | 41 |
papers/burkhardtClinicalRelevanceMolecular2022b.md
| ... | ... | @@ -35,31 +35,31 @@ All other BL studies, BL Tier 2, 132 |
| 35 | 35 | |
| 36 | 36 | |New gene|BL tier| |
| 37 | 37 | |:-|:-:| |
| 38 | -|[ADAMTS5](ADAMTS5)|2 | |
|
| 39 | -|[ADNP](ADNP)|2 | |
|
| 40 | -|[AGO4](AGO4)|2 | |
|
| 41 | -|[BCL2](BCL2)|2 | |
|
| 42 | -|[BTG1](BTG1)|2 | |
|
| 43 | -|[CD79A](CD79A)|2 | |
|
| 44 | -|[CHD4](CHD4)|2 | |
|
| 45 | -|[CPXM2](CPXM2)|2 | |
|
| 46 | -|[E2F2](E2F2)|2 | |
|
| 47 | -|[EDNRB](EDNRB)|2 | |
|
| 48 | -|[ERAP1](ERAP1)|2 | |
|
| 49 | -|[HLA-DQB1](HLA-DQB1)|2 | |
|
| 50 | -|[KLHL26](KLHL26)|2 | |
|
| 51 | -|[NOA1](NOA1)|2 | |
|
| 52 | -|[PIM1](PIM1)|2 | |
|
| 53 | -|[PPP6R2](PPP6R2)|2 | |
|
| 54 | -|[PREX1](PREX1)|2 | |
|
| 55 | -|[REV3L](REV3L)|2 | |
|
| 56 | -|[RPL10](RPL10)|2 | |
|
| 57 | -|[SAL3](SAL3)|2 | |
|
| 58 | -|[TTN](TTN)|2 | |
|
| 59 | -|[VWA7](VWA7)|2 | |
|
| 60 | -|[ZAN](ZAN)|2 | |
|
| 61 | -|[ZBTB7A](ZBTB7A)|2 | |
|
| 62 | -|[ZNF85](ZNF85)|2 | |
|
| 38 | +|[ADAMTS5](../ADAMTS5)|2 | |
|
| 39 | +|[ADNP](../ADNP)|2 | |
|
| 40 | +|[AGO4](../AGO4)|2 | |
|
| 41 | +|[BCL2](../BCL2)|2 | |
|
| 42 | +|[BTG1](../BTG1)|2 | |
|
| 43 | +|[CD79A](../CD79A)|2 | |
|
| 44 | +|[CHD4](../CHD4)|2 | |
|
| 45 | +|[CPXM2](../CPXM2)|2 | |
|
| 46 | +|[E2F2](../E2F2)|2 | |
|
| 47 | +|[EDNRB](../EDNRB)|2 | |
|
| 48 | +|[ERAP1](../ERAP1)|2 | |
|
| 49 | +|[HLA-DQB1](../HLA-DQB1)|2 | |
|
| 50 | +|[KLHL26](../KLHL26)|2 | |
|
| 51 | +|[NOA1](../NOA1)|2 | |
|
| 52 | +|[PIM1](../PIM1)|2 | |
|
| 53 | +|[PPP6R2](../PPP6R2)|2 | |
|
| 54 | +|[PREX1](../PREX1)|2 | |
|
| 55 | +|[REV3L](../REV3L)|2 | |
|
| 56 | +|[RPL10](../RPL10)|2 | |
|
| 57 | +|[SAL3](../SAL3)|2 | |
|
| 58 | +|[TTN](../TTN)|2 | |
|
| 59 | +|[VWA7](../VWA7)|2 | |
|
| 60 | +|[ZAN](../ZAN)|2 | |
|
| 61 | +|[ZBTB7A](../ZBTB7A)|2 | |
|
| 62 | +|[ZNF85](../ZNF85)|2 | |
|
| 63 | 63 | |
| 64 | 64 | # Details |
| 65 | 65 |
papers/chapuyMolecularSubtypesDiffuse2018b.md
| ... | ... | @@ -35,25 +35,25 @@ All other DLBCL studies, DLBCL Tier 2, 181 |
| 35 | 35 | |
| 36 | 36 | |New gene|DLBCL tier| |
| 37 | 37 | |:-|:-:| |
| 38 | -|[CCL4](CCL4)|2 | |
|
| 39 | -|[COQ7](COQ7)|2 | |
|
| 40 | -|[CRIP1](CRIP1)|2 | |
|
| 41 | -|[DOCK1](DOCK1)|2 | |
|
| 42 | -|[FUT5](FUT5)|2 | |
|
| 43 | -|[GABRA2](GABRA2)|2 | |
|
| 44 | -|[HIST1H1B](HIST1H1B)|1 | |
|
| 45 | -|[IL6](IL6)|2 | |
|
| 46 | -|[LTB](LTB)|1 | |
|
| 47 | -|[LYN](LYN)|2 | |
|
| 48 | -|[NANOG](NANOG)|2 | |
|
| 49 | -|[NAV1](NAV1)|2 | |
|
| 50 | -|[NLRP8](NLRP8)|2 | |
|
| 51 | -|[PDE4DIP](PDE4DIP)|2 | |
|
| 52 | -|[PRPS1](PRPS1)|2 | |
|
| 53 | -|[RAD9A](RAD9A)|2 | |
|
| 54 | -|[SMEK1](SMEK1)|2 | |
|
| 55 | -|[TLR2](TLR2)|2 | |
|
| 56 | -|[ZNF423](ZNF423)|2 | |
|
| 38 | +|[CCL4](../CCL4)|2 | |
|
| 39 | +|[COQ7](../COQ7)|2 | |
|
| 40 | +|[CRIP1](../CRIP1)|2 | |
|
| 41 | +|[DOCK1](../DOCK1)|2 | |
|
| 42 | +|[FUT5](../FUT5)|2 | |
|
| 43 | +|[GABRA2](../GABRA2)|2 | |
|
| 44 | +|[HIST1H1B](../HIST1H1B)|1 | |
|
| 45 | +|[IL6](../IL6)|2 | |
|
| 46 | +|[LTB](../LTB)|1 | |
|
| 47 | +|[LYN](../LYN)|2 | |
|
| 48 | +|[NANOG](../NANOG)|2 | |
|
| 49 | +|[NAV1](../NAV1)|2 | |
|
| 50 | +|[NLRP8](../NLRP8)|2 | |
|
| 51 | +|[PDE4DIP](../PDE4DIP)|2 | |
|
| 52 | +|[PRPS1](../PRPS1)|2 | |
|
| 53 | +|[RAD9A](../RAD9A)|2 | |
|
| 54 | +|[SMEK1](../SMEK1)|2 | |
|
| 55 | +|[TLR2](../TLR2)|2 | |
|
| 56 | +|[ZNF423](../ZNF423)|2 | |
|
| 57 | 57 | |
| 58 | 58 | # Details |
| 59 | 59 |
papers/cheungAcquiredTNFRSF14Mutations2010a.md
| ... | ... | @@ -24,11 +24,11 @@ config: |
| 24 | 24 | --- |
| 25 | 25 | sankey-beta |
| 26 | 26 | This study, New Tier 1, 1 |
| 27 | -New Tier 1, FL Tier 1, 1 |
|
| 27 | +New Tier 1, DLBCL Tier 1, 1 |
|
| 28 | 28 | This study, New Tier 2, 0 |
| 29 | -New Tier 2, FL Tier 2, 0 |
|
| 30 | -All other FL studies, FL Tier 1, 65 |
|
| 31 | -All other FL studies, FL Tier 2, 50 |
|
| 29 | +New Tier 2, DLBCL Tier 2, 0 |
|
| 30 | +All other DLBCL studies, DLBCL Tier 1, 127 |
|
| 31 | +All other DLBCL studies, DLBCL Tier 2, 198 |
|
| 32 | 32 | ``` |
| 33 | 33 | |
| 34 | 34 | |
| ... | ... | @@ -36,7 +36,7 @@ All other FL studies, FL Tier 2, 50 |
| 36 | 36 | |
| 37 | 37 | |New gene|DLBCL tier|FL tier| |
| 38 | 38 | |:-|:-:|:-:| |
| 39 | -|[TNFRSF14](TNFRSF14)|1 |1 | |
|
| 39 | +|[TNFRSF14](../TNFRSF14)|1 |1 | |
|
| 40 | 40 | |
| 41 | 41 | # Details |
| 42 | 42 |
papers/compagnoMutationsMultipleGenes2009a.md
| ... | ... | @@ -35,7 +35,7 @@ All other DLBCL studies, DLBCL Tier 2, 198 |
| 35 | 35 | |
| 36 | 36 | |New gene|DLBCL tier| |
| 37 | 37 | |:-|:-:| |
| 38 | -|[TNFAIP3](TNFAIP3)|1 | |
|
| 38 | +|[TNFAIP3](../TNFAIP3)|1 | |
|
| 39 | 39 | |
| 40 | 40 | # Details |
| 41 | 41 |
papers/deschGenotypingCirculatingTumor2020.md
| ... | ... | @@ -35,16 +35,16 @@ All other PMBL studies, PMBL Tier 2, 73 |
| 35 | 35 | |
| 36 | 36 | |New gene|PMBL tier| |
| 37 | 37 | |:-|:-:| |
| 38 | -|[ACTG1](ACTG1)|2 | |
|
| 39 | -|[CCND3](CCND3)|2 | |
|
| 40 | -|[CDH2](CDH2)|2 | |
|
| 41 | -|[EZR](EZR)|2 | |
|
| 42 | -|[HLA-A](HLA-A)|2 | |
|
| 43 | -|[IGLL5](IGLL5)|2 | |
|
| 44 | -|[KLF2](KLF2)|2 | |
|
| 45 | -|[KMT2D](KMT2D)|2 | |
|
| 46 | -|[LTB](LTB)|1 | |
|
| 47 | -|[MYB](MYB)|2 | |
|
| 38 | +|[ACTG1](../ACTG1)|2 | |
|
| 39 | +|[CCND3](../CCND3)|2 | |
|
| 40 | +|[CDH2](../CDH2)|2 | |
|
| 41 | +|[EZR](../EZR)|2 | |
|
| 42 | +|[HLA-A](../HLA-A)|2 | |
|
| 43 | +|[IGLL5](../IGLL5)|2 | |
|
| 44 | +|[KLF2](../KLF2)|2 | |
|
| 45 | +|[KMT2D](../KMT2D)|2 | |
|
| 46 | +|[LTB](../LTB)|1 | |
|
| 47 | +|[MYB](../MYB)|2 | |
|
| 48 | 48 | |
| 49 | 49 | # Details |
| 50 | 50 |
papers/dunsCharacterizationDLBCLPMBL2021b.md
| ... | ... | @@ -8,8 +8,8 @@ bibliography: 'morinlab.bib' |
| 8 | 8 | |
| 9 | 9 | |Entity| Tier 1 genes| Tier 2 genes| |
| 10 | 10 | |:-:|:-:|:-:| |
| 11 | -|PMBL|6|8| |
|
| 12 | 11 | |DLBCL|8|3| |
| 12 | +|PMBL|6|8| |
|
| 13 | 13 | ```mermaid |
| 14 | 14 | --- |
| 15 | 15 | config: |
| ... | ... | @@ -34,22 +34,22 @@ All other PMBL studies, PMBL Tier 2, 74 |
| 34 | 34 | |
| 35 | 35 | ## Novel genes reported in this study |
| 36 | 36 | |
| 37 | -|New gene|PMBL tier|DLBCL tier| |
|
| 37 | +|New gene|DLBCL tier|PMBL tier| |
|
| 38 | 38 | |:-|:-:|:-:| |
| 39 | -|[BIRC3](BIRC3)|2 |2 | |
|
| 40 | -|[CD83](CD83)|1 |1 | |
|
| 41 | -|[CREBBP](CREBBP)|1 |1 | |
|
| 42 | -|[DUSP2](DUSP2)|1 |1 | |
|
| 43 | -|[FOXO1](FOXO1)|2 |1 | |
|
| 44 | -|[HRNR](HRNR)|2 | | |
|
| 45 | -|[IL4R](IL4R)|1 |1 | |
|
| 46 | -|[LPHN3](LPHN3)|2 | | |
|
| 47 | -|[MCL1](MCL1)|2 |2 | |
|
| 48 | -|[MYC](MYC)|2 |1 | |
|
| 49 | -|[PIM1](PIM1)|1 |1 | |
|
| 50 | -|[RFTN1](RFTN1)|2 |2 | |
|
| 51 | -|[SGK1](SGK1)|1 |1 | |
|
| 52 | -|[WDR87](WDR87)|2 | | |
|
| 39 | +|[BIRC3](../BIRC3)|2 |2 | |
|
| 40 | +|[CD83](../CD83)|1 |1 | |
|
| 41 | +|[CREBBP](../CREBBP)|1 |1 | |
|
| 42 | +|[DUSP2](../DUSP2)|1 |1 | |
|
| 43 | +|[FOXO1](../FOXO1)|1 |2 | |
|
| 44 | +|[HRNR](../HRNR)| |2 | |
|
| 45 | +|[IL4R](../IL4R)|1 |1 | |
|
| 46 | +|[LPHN3](../LPHN3)| |2 | |
|
| 47 | +|[MCL1](../MCL1)|2 |2 | |
|
| 48 | +|[MYC](../MYC)|1 |2 | |
|
| 49 | +|[PIM1](../PIM1)|1 |1 | |
|
| 50 | +|[RFTN1](../RFTN1)|2 |2 | |
|
| 51 | +|[SGK1](../SGK1)|1 |1 | |
|
| 52 | +|[WDR87](../WDR87)| |2 | |
|
| 53 | 53 | |
| 54 | 54 | # Details |
| 55 | 55 |
papers/ganapathiGeneticLandscapeDural2016.md
| ... | ... | @@ -35,7 +35,7 @@ All other MZL studies, MZL Tier 2, 74 |
| 35 | 35 | |
| 36 | 36 | |New gene|MZL tier| |
| 37 | 37 | |:-|:-:| |
| 38 | -|[KLHL6](KLHL6)|1 | |
|
| 38 | +|[KLHL6](../KLHL6)|1 | |
|
| 39 | 39 | |
| 40 | 40 | # Details |
| 41 | 41 |
papers/gomezUltraDeepSequencingReveals2023.md
| ... | ... | @@ -35,13 +35,13 @@ All other PMBL studies, PMBL Tier 2, 77 |
| 35 | 35 | |
| 36 | 36 | |New gene|PMBL tier| |
| 37 | 37 | |:-|:-:| |
| 38 | -|[ARID5B](ARID5B)|1 | |
|
| 39 | -|[AXDND1](AXDND1)|2 | |
|
| 40 | -|[CDH5](CDH5)|2 | |
|
| 41 | -|[DTX1](DTX1)|1 | |
|
| 42 | -|[HLA-C](HLA-C)|2 | |
|
| 43 | -|[LIMD2](LIMD2)|2 | |
|
| 44 | -|[OR13C2](OR13C2)|2 | |
|
| 38 | +|[ARID5B](../ARID5B)|1 | |
|
| 39 | +|[AXDND1](../AXDND1)|2 | |
|
| 40 | +|[CDH5](../CDH5)|2 | |
|
| 41 | +|[DTX1](../DTX1)|1 | |
|
| 42 | +|[HLA-C](../HLA-C)|2 | |
|
| 43 | +|[LIMD2](../LIMD2)|2 | |
|
| 44 | +|[OR13C2](../OR13C2)|2 | |
|
| 45 | 45 | |
| 46 | 46 | # Details |
| 47 | 47 |
papers/grandeGenomewideDiscoverySomatic2019.md
| ... | ... | @@ -35,19 +35,19 @@ All other BL studies, BL Tier 2, 153 |
| 35 | 35 | |
| 36 | 36 | |New gene|BL tier| |
| 37 | 37 | |:-|:-:| |
| 38 | -|[BACH2](BACH2)|2 | |
|
| 39 | -|[BCL7A](BCL7A)|1 | |
|
| 40 | -|[CDKN2A](CDKN2A)|2 | |
|
| 41 | -|[CHD8](CHD8)|1 | |
|
| 42 | -|[GNAI2](GNAI2)|1 | |
|
| 43 | -|[HIST1H1E](HIST1H1E)|2 | |
|
| 44 | -|[KMT2D](KMT2D)|1 | |
|
| 45 | -|[MIR142](MIR142)|2 | |
|
| 46 | -|[RFX7](RFX7)|1 | |
|
| 47 | -|[SIN3A](SIN3A)|1 | |
|
| 48 | -|[TCL1A](TCL1A)|1 | |
|
| 49 | -|[TFAP4](TFAP4)|1 | |
|
| 50 | -|[USP7](USP7)|1 | |
|
| 38 | +|[BACH2](../BACH2)|2 | |
|
| 39 | +|[BCL7A](../BCL7A)|1 | |
|
| 40 | +|[CDKN2A](../CDKN2A)|2 | |
|
| 41 | +|[CHD8](../CHD8)|1 | |
|
| 42 | +|[GNAI2](../GNAI2)|1 | |
|
| 43 | +|[HIST1H1E](../HIST1H1E)|2 | |
|
| 44 | +|[KMT2D](../KMT2D)|1 | |
|
| 45 | +|[MIR142](../MIR142)|2 | |
|
| 46 | +|[RFX7](../RFX7)|1 | |
|
| 47 | +|[SIN3A](../SIN3A)|1 | |
|
| 48 | +|[TCL1A](../TCL1A)|1 | |
|
| 49 | +|[TFAP4](../TFAP4)|1 | |
|
| 50 | +|[USP7](../USP7)|1 | |
|
| 51 | 51 | |
| 52 | 52 | # Details |
| 53 | 53 |
papers/gunawardanaRecurrentSomaticMutations2014c.md
| ... | ... | @@ -35,7 +35,7 @@ All other PMBL studies, PMBL Tier 2, 82 |
| 35 | 35 | |
| 36 | 36 | |New gene|PMBL tier| |
| 37 | 37 | |:-|:-:| |
| 38 | -|[PTPN1](PTPN1)|1 | |
|
| 38 | +|[PTPN1](../PTPN1)|1 | |
|
| 39 | 39 | |
| 40 | 40 | # Details |
| 41 | 41 |
papers/hubschmannMutationalMechanismsShaping2021b.md
| ... | ... | @@ -8,8 +8,8 @@ bibliography: 'morinlab.bib' |
| 8 | 8 | |
| 9 | 9 | |Entity| Tier 1 genes| Tier 2 genes| |
| 10 | 10 | |:-:|:-:|:-:| |
| 11 | -|FL|2|15| |
|
| 12 | 11 | |DLBCL|3|23| |
| 12 | +|FL|2|15| |
|
| 13 | 13 | ```mermaid |
| 14 | 14 | --- |
| 15 | 15 | config: |
| ... | ... | @@ -34,46 +34,46 @@ All other DLBCL studies, DLBCL Tier 2, 175 |
| 34 | 34 | |
| 35 | 35 | ## Novel genes reported in this study |
| 36 | 36 | |
| 37 | -|New gene|FL tier|DLBCL tier| |
|
| 37 | +|New gene|DLBCL tier|FL tier| |
|
| 38 | 38 | |:-|:-:|:-:| |
| 39 | -|[ACTG1](ACTG1)|2 |1 | |
|
| 40 | -|[ADAMTS1](ADAMTS1)| |2 | |
|
| 41 | -|[ANKRD12](ANKRD12)| |2 | |
|
| 42 | -|[ATP6V1A](ATP6V1A)|2 | | |
|
| 43 | -|[CADPS2](CADPS2)| |2 | |
|
| 44 | -|[CCDC42BPB](CCDC42BPB)|2 | | |
|
| 45 | -|[CNOT2](CNOT2)| |2 | |
|
| 46 | -|[CPNE8](CPNE8)|2 | | |
|
| 47 | -|[DHX15](DHX15)|2 | | |
|
| 48 | -|[DHX16](DHX16)| |2 | |
|
| 49 | -|[DNM2](DNM2)| |2 | |
|
| 50 | -|[EEF1A1](EEF1A1)|1 |1 | |
|
| 51 | -|[FBXO11](FBXO11)| |1 | |
|
| 52 | -|[FZR1](FZR1)|2 | | |
|
| 53 | -|[GAK](GAK)| |2 | |
|
| 54 | -|[HLA-DQA1](HLA-DQA1)| |2 | |
|
| 55 | -|[IKBKE](IKBKE)| |2 | |
|
| 56 | -|[IRF1](IRF1)| |2 | |
|
| 57 | -|[JUP](JUP)|2 | | |
|
| 58 | -|[LAPTM5](LAPTM5)|2 |2 | |
|
| 59 | -|[LRP12](LRP12)| |2 | |
|
| 60 | -|[MGEA5](MGEA5)|2 | | |
|
| 61 | -|[MYCBP2](MYCBP2)|2 | | |
|
| 62 | -|[N2RF2](N2RF2)| |2 | |
|
| 63 | -|[PDS5B](PDS5B)|2 |2 | |
|
| 64 | -|[PNPO](PNPO)| |2 | |
|
| 65 | -|[PPP4C](PPP4C)|2 | | |
|
| 66 | -|[PRKDC](PRKDC)|2 |2 | |
|
| 67 | -|[RAC2](RAC2)| |2 | |
|
| 68 | -|[RBM6](RBM6)|2 | | |
|
| 69 | -|[SIAH2](SIAH2)| |2 | |
|
| 70 | -|[SLC34A2](SLC34A2)| |2 | |
|
| 71 | -|[TPP1](TPP1)|2 | | |
|
| 72 | -|[TRAF6](TRAF6)| |2 | |
|
| 73 | -|[UNC5B](UNC5B)| |2 | |
|
| 74 | -|[VMA21](VMA21)|1 | | |
|
| 75 | -|[WNK1](WNK1)| |2 | |
|
| 76 | -|[ZNF217](ZNF217)| |2 | |
|
| 39 | +|[ACTG1](../ACTG1)|1 |2 | |
|
| 40 | +|[ADAMTS1](../ADAMTS1)|2 | | |
|
| 41 | +|[ANKRD12](../ANKRD12)|2 | | |
|
| 42 | +|[ATP6V1A](../ATP6V1A)| |2 | |
|
| 43 | +|[CADPS2](../CADPS2)|2 | | |
|
| 44 | +|[CCDC42BPB](../CCDC42BPB)| |2 | |
|
| 45 | +|[CNOT2](../CNOT2)|2 | | |
|
| 46 | +|[CPNE8](../CPNE8)| |2 | |
|
| 47 | +|[DHX15](../DHX15)| |2 | |
|
| 48 | +|[DHX16](../DHX16)|2 | | |
|
| 49 | +|[DNM2](../DNM2)|2 | | |
|
| 50 | +|[EEF1A1](../EEF1A1)|1 |1 | |
|
| 51 | +|[FBXO11](../FBXO11)|1 | | |
|
| 52 | +|[FZR1](../FZR1)| |2 | |
|
| 53 | +|[GAK](../GAK)|2 | | |
|
| 54 | +|[HLA-DQA1](../HLA-DQA1)|2 | | |
|
| 55 | +|[IKBKE](../IKBKE)|2 | | |
|
| 56 | +|[IRF1](../IRF1)|2 | | |
|
| 57 | +|[JUP](../JUP)| |2 | |
|
| 58 | +|[LAPTM5](../LAPTM5)|2 |2 | |
|
| 59 | +|[LRP12](../LRP12)|2 | | |
|
| 60 | +|[MGEA5](../MGEA5)| |2 | |
|
| 61 | +|[MYCBP2](../MYCBP2)| |2 | |
|
| 62 | +|[N2RF2](../N2RF2)|2 | | |
|
| 63 | +|[PDS5B](../PDS5B)|2 |2 | |
|
| 64 | +|[PNPO](../PNPO)|2 | | |
|
| 65 | +|[PPP4C](../PPP4C)| |2 | |
|
| 66 | +|[PRKDC](../PRKDC)|2 |2 | |
|
| 67 | +|[RAC2](../RAC2)|2 | | |
|
| 68 | +|[RBM6](../RBM6)| |2 | |
|
| 69 | +|[SIAH2](../SIAH2)|2 | | |
|
| 70 | +|[SLC34A2](../SLC34A2)|2 | | |
|
| 71 | +|[TPP1](../TPP1)| |2 | |
|
| 72 | +|[TRAF6](../TRAF6)|2 | | |
|
| 73 | +|[UNC5B](../UNC5B)|2 | | |
|
| 74 | +|[VMA21](../VMA21)| |1 | |
|
| 75 | +|[WNK1](../WNK1)|2 | | |
|
| 76 | +|[ZNF217](../ZNF217)|2 | | |
|
| 77 | 77 | |
| 78 | 78 | # Details |
| 79 | 79 |
papers/jalladesExomeSequencingIdentifies2017.md
| ... | ... | @@ -35,34 +35,34 @@ All other MZL studies, MZL Tier 2, 48 |
| 35 | 35 | |
| 36 | 36 | |New gene|MZL tier| |
| 37 | 37 | |:-|:-:| |
| 38 | -|[ARHGAP20](ARHGAP20)|2 | |
|
| 39 | -|[ARHGEF15](ARHGEF15)|2 | |
|
| 40 | -|[ARHGEF17](ARHGEF17)|2 | |
|
| 41 | -|[BCOR](BCOR)|2 | |
|
| 42 | -|[CCND3](CCND3)|1 | |
|
| 43 | -|[DNAH5](DNAH5)|2 | |
|
| 44 | -|[DNAH7](DNAH7)|2 | |
|
| 45 | -|[DNAI1](DNAI1)|2 | |
|
| 46 | -|[DOCK6](DOCK6)|2 | |
|
| 47 | -|[DTX3L](DTX3L)|2 | |
|
| 48 | -|[EZH1](EZH1)|2 | |
|
| 49 | -|[HIST1H1D](HIST1H1D)|2 | |
|
| 50 | -|[HIST1H2AD](HIST1H2AD)|2 | |
|
| 51 | -|[HIST4H4](HIST4H4)|2 | |
|
| 52 | -|[HRAS](HRAS)|2 | |
|
| 53 | -|[KAT6A](KAT6A)|2 | |
|
| 54 | -|[KDM6A](KDM6A)|2 | |
|
| 55 | -|[KIF26A](KIF26A)|2 | |
|
| 56 | -|[KLF2](KLF2)|1 | |
|
| 57 | -|[MGA](MGA)|2 | |
|
| 58 | -|[MYC](MYC)|2 | |
|
| 59 | -|[MYLK](MYLK)|2 | |
|
| 60 | -|[NCOA6](NCOA6)|2 | |
|
| 61 | -|[NRAS](NRAS)|2 | |
|
| 62 | -|[RAF1](RAF1)|2 | |
|
| 63 | -|[ROCK1](ROCK1)|2 | |
|
| 64 | -|[TBK1](TBK1)|2 | |
|
| 65 | -|[WNK1](WNK1)|2 | |
|
| 38 | +|[ARHGAP20](../ARHGAP20)|2 | |
|
| 39 | +|[ARHGEF15](../ARHGEF15)|2 | |
|
| 40 | +|[ARHGEF17](../ARHGEF17)|2 | |
|
| 41 | +|[BCOR](../BCOR)|2 | |
|
| 42 | +|[CCND3](../CCND3)|1 | |
|
| 43 | +|[DNAH5](../DNAH5)|2 | |
|
| 44 | +|[DNAH7](../DNAH7)|2 | |
|
| 45 | +|[DNAI1](../DNAI1)|2 | |
|
| 46 | +|[DOCK6](../DOCK6)|2 | |
|
| 47 | +|[DTX3L](../DTX3L)|2 | |
|
| 48 | +|[EZH1](../EZH1)|2 | |
|
| 49 | +|[HIST1H1D](../HIST1H1D)|2 | |
|
| 50 | +|[HIST1H2AD](../HIST1H2AD)|2 | |
|
| 51 | +|[HIST4H4](../HIST4H4)|2 | |
|
| 52 | +|[HRAS](../HRAS)|2 | |
|
| 53 | +|[KAT6A](../KAT6A)|2 | |
|
| 54 | +|[KDM6A](../KDM6A)|2 | |
|
| 55 | +|[KIF26A](../KIF26A)|2 | |
|
| 56 | +|[KLF2](../KLF2)|1 | |
|
| 57 | +|[MGA](../MGA)|2 | |
|
| 58 | +|[MYC](../MYC)|2 | |
|
| 59 | +|[MYLK](../MYLK)|2 | |
|
| 60 | +|[NCOA6](../NCOA6)|2 | |
|
| 61 | +|[NRAS](../NRAS)|2 | |
|
| 62 | +|[RAF1](../RAF1)|2 | |
|
| 63 | +|[ROCK1](../ROCK1)|2 | |
|
| 64 | +|[TBK1](../TBK1)|2 | |
|
| 65 | +|[WNK1](../WNK1)|2 | |
|
| 66 | 66 | |
| 67 | 67 | # Details |
| 68 | 68 |
papers/jardinRecurrentMutationsExportin2016a.md
| ... | ... | @@ -35,7 +35,7 @@ All other PMBL studies, PMBL Tier 2, 82 |
| 35 | 35 | |
| 36 | 36 | |New gene|PMBL tier| |
| 37 | 37 | |:-|:-:| |
| 38 | -|[XPO1](XPO1)|1 | |
|
| 38 | +|[XPO1](../XPO1)|1 | |
|
| 39 | 39 | |
| 40 | 40 | # Details |
| 41 | 41 |
papers/johnstonCmycHypermutationBurkitt1992.md
| ... | ... | @@ -35,7 +35,7 @@ All other BL studies, BL Tier 2, 157 |
| 35 | 35 | |
| 36 | 36 | |New gene|BL tier| |
| 37 | 37 | |:-|:-:| |
| 38 | -|[MYC](MYC)|1 | |
|
| 38 | +|[MYC](../MYC)|1 | |
|
| 39 | 39 | |
| 40 | 40 | # Details |
| 41 | 41 |
papers/khodabakhshiRecurrentTargetsAberrant2012.md
| ... | ... | @@ -35,7 +35,7 @@ All other DLBCL studies, DLBCL Tier 2, 198 |
| 35 | 35 | |
| 36 | 36 | |New gene|DLBCL tier| |
| 37 | 37 | |:-|:-:| |
| 38 | -|[CXCR4](CXCR4)|1 | |
|
| 38 | +|[CXCR4](../CXCR4)|1 | |
|
| 39 | 39 | |
| 40 | 40 | # Details |
| 41 | 41 |
papers/krysiakRecurrentSomaticMutations2017b.md
| ... | ... | @@ -35,28 +35,28 @@ All other FL studies, FL Tier 2, 45 |
| 35 | 35 | |
| 36 | 36 | |New gene|FL tier| |
| 37 | 37 | |:-|:-:| |
| 38 | -|[ARID1A](ARID1A)|1 | |
|
| 39 | -|[BCL7A](BCL7A)|1 | |
|
| 40 | -|[BTK](BTK)|1 | |
|
| 41 | -|[CXCR4](CXCR4)|2 | |
|
| 42 | -|[EGR1](EGR1)|2 | |
|
| 43 | -|[HIST1H1B](HIST1H1B)|1 | |
|
| 44 | -|[HIST1H1D](HIST1H1D)|1 | |
|
| 45 | -|[HIST1H1E](HIST1H1E)|1 | |
|
| 46 | -|[HIST1H2AC](HIST1H2AC)|1 | |
|
| 47 | -|[HIST1H2AG](HIST1H2AG)|1 | |
|
| 48 | -|[HIST1H2AM](HIST1H2AM)|1 | |
|
| 49 | -|[HIST1H2BC](HIST1H2BC)|1 | |
|
| 50 | -|[HIST1H2BD](HIST1H2BD)|1 | |
|
| 51 | -|[HIST1H2BG](HIST1H2BG)|1 | |
|
| 52 | -|[HIST1H2BM](HIST1H2BM)|2 | |
|
| 53 | -|[HIST1H3G](HIST1H3G)|1 | |
|
| 54 | -|[HIST1H3I](HIST1H3I)|2 | |
|
| 55 | -|[HVCN1](HVCN1)|1 | |
|
| 56 | -|[POU2AF1](POU2AF1)|1 | |
|
| 57 | -|[POU2F2](POU2F2)|1 | |
|
| 58 | -|[SMARCA4](SMARCA4)|1 | |
|
| 59 | -|[ZNF608](ZNF608)|2 | |
|
| 38 | +|[ARID1A](../ARID1A)|1 | |
|
| 39 | +|[BCL7A](../BCL7A)|1 | |
|
| 40 | +|[BTK](../BTK)|1 | |
|
| 41 | +|[CXCR4](../CXCR4)|2 | |
|
| 42 | +|[EGR1](../EGR1)|2 | |
|
| 43 | +|[HIST1H1B](../HIST1H1B)|1 | |
|
| 44 | +|[HIST1H1D](../HIST1H1D)|1 | |
|
| 45 | +|[HIST1H1E](../HIST1H1E)|1 | |
|
| 46 | +|[HIST1H2AC](../HIST1H2AC)|1 | |
|
| 47 | +|[HIST1H2AG](../HIST1H2AG)|1 | |
|
| 48 | +|[HIST1H2AM](../HIST1H2AM)|1 | |
|
| 49 | +|[HIST1H2BC](../HIST1H2BC)|1 | |
|
| 50 | +|[HIST1H2BD](../HIST1H2BD)|1 | |
|
| 51 | +|[HIST1H2BG](../HIST1H2BG)|1 | |
|
| 52 | +|[HIST1H2BM](../HIST1H2BM)|2 | |
|
| 53 | +|[HIST1H3G](../HIST1H3G)|1 | |
|
| 54 | +|[HIST1H3I](../HIST1H3I)|2 | |
|
| 55 | +|[HVCN1](../HVCN1)|1 | |
|
| 56 | +|[POU2AF1](../POU2AF1)|1 | |
|
| 57 | +|[POU2F2](../POU2F2)|1 | |
|
| 58 | +|[SMARCA4](../SMARCA4)|1 | |
|
| 59 | +|[ZNF608](../ZNF608)|2 | |
|
| 60 | 60 | |
| 61 | 61 | # Details |
| 62 | 62 |
papers/kwanhianMicroRNA142Mutated202012b.md
| ... | ... | @@ -35,7 +35,7 @@ All other DLBCL studies, DLBCL Tier 2, 197 |
| 35 | 35 | |
| 36 | 36 | |New gene|DLBCL tier| |
| 37 | 37 | |:-|:-:| |
| 38 | -|[MIR142](MIR142)|2 | |
|
| 38 | +|[MIR142](../MIR142)|2 | |
|
| 39 | 39 | |
| 40 | 40 | # Details |
| 41 | 41 |
papers/lakeMutationsNFKBIAEncoding2009.md
| ... | ... | @@ -35,7 +35,7 @@ All other DLBCL studies, DLBCL Tier 2, 198 |
| 35 | 35 | |
| 36 | 36 | |New gene|DLBCL tier| |
| 37 | 37 | |:-|:-:| |
| 38 | -|[NFKBIA](NFKBIA)|1 | |
|
| 38 | +|[NFKBIA](../NFKBIA)|1 | |
|
| 39 | 39 | |
| 40 | 40 | # Details |
| 41 | 41 |
papers/lenzOncogenicCARD11Mutations2008.md
| ... | ... | @@ -35,7 +35,7 @@ All other DLBCL studies, DLBCL Tier 2, 198 |
| 35 | 35 | |
| 36 | 36 | |New gene|DLBCL tier| |
| 37 | 37 | |:-|:-:| |
| 38 | -|[CARD11](CARD11)|1 | |
|
| 38 | +|[CARD11](../CARD11)|1 | |
|
| 39 | 39 | |
| 40 | 40 | # Details |
| 41 | 41 |
papers/lohrDiscoveryPrioritizationSomatic2012a.md
| ... | ... | @@ -35,10 +35,10 @@ All other DLBCL studies, DLBCL Tier 2, 197 |
| 35 | 35 | |
| 36 | 36 | |New gene|DLBCL tier| |
| 37 | 37 | |:-|:-:| |
| 38 | -|[ACTB](ACTB)|1 | |
|
| 39 | -|[KRAS](KRAS)|1 | |
|
| 40 | -|[P2RY8](P2RY8)|1 | |
|
| 41 | -|[PCLO](PCLO)|2 | |
|
| 38 | +|[ACTB](../ACTB)|1 | |
|
| 39 | +|[KRAS](../KRAS)|1 | |
|
| 40 | +|[P2RY8](../P2RY8)|1 | |
|
| 41 | +|[PCLO](../PCLO)|2 | |
|
| 42 | 42 | |
| 43 | 43 | # Details |
| 44 | 44 |
papers/louissaintPediatrictypeNodalFollicular2016a.md
| ... | ... | @@ -35,7 +35,7 @@ All other FL studies, FL Tier 2, 50 |
| 35 | 35 | |
| 36 | 36 | |New gene|FL tier| |
| 37 | 37 | |:-|:-:| |
| 38 | -|[MAP2K1](MAP2K1)|1 | |
|
| 38 | +|[MAP2K1](../MAP2K1)|1 | |
|
| 39 | 39 | |
| 40 | 40 | # Details |
| 41 | 41 |
papers/loveGeneticLandscapeMutations2012.md
| ... | ... | @@ -35,65 +35,65 @@ All other BL studies, BL Tier 2, 101 |
| 35 | 35 | |
| 36 | 36 | |New gene|BL tier| |
| 37 | 37 | |:-|:-:| |
| 38 | -|[ACAD9](ACAD9)|2 | |
|
| 39 | -|[ACE](ACE)|2 | |
|
| 40 | -|[ARID1A](ARID1A)|1 | |
|
| 41 | -|[ATP2C2](ATP2C2)|2 | |
|
| 42 | -|[BCL6](BCL6)|2 | |
|
| 43 | -|[BRAF](BRAF)|2 | |
|
| 44 | -|[BRD4](BRD4)|2 | |
|
| 45 | -|[BTG2](BTG2)|2 | |
|
| 46 | -|[C6orf27](C6orf27)|2 | |
|
| 47 | -|[CAD](CAD)|2 | |
|
| 48 | -|[CARD4](CARD4)|2 | |
|
| 49 | -|[CCT6B](CCT6B)|2 | |
|
| 50 | -|[CDC73](CDC73)|2 | |
|
| 51 | -|[CDH17](CDH17)|2 | |
|
| 52 | -|[COL4A2](COL4A2)|2 | |
|
| 53 | -|[CREBBP](CREBBP)|2 | |
|
| 54 | -|[CYB5D1](CYB5D1)|2 | |
|
| 55 | -|[CYP4F22](CYP4F22)|2 | |
|
| 56 | -|[DLGAP1](DLGAP1)|2 | |
|
| 57 | -|[EIF2C4](EIF2C4)|2 | |
|
| 58 | -|[EML2](EML2)|2 | |
|
| 59 | -|[ENTPD3](ENTPD3)|2 | |
|
| 60 | -|[EPHB2](EPHB2)|2 | |
|
| 61 | -|[EZH2](EZH2)|2 | |
|
| 62 | -|[FAM129B](FAM129B)|2 | |
|
| 63 | -|[FGFR3](FGFR3)|2 | |
|
| 64 | -|[FTCD](FTCD)|2 | |
|
| 65 | -|[GGTLA4](GGTLA4)|2 | |
|
| 66 | -|[GNA13](GNA13)|1 | |
|
| 67 | -|[GRIK5](GRIK5)|2 | |
|
| 68 | -|[ICK](ICK)|2 | |
|
| 69 | -|[ITPR3](ITPR3)|2 | |
|
| 70 | -|[KIFC3](KIFC3)|2 | |
|
| 71 | -|[MAP3K6](MAP3K6)|2 | |
|
| 72 | -|[MYH10](MYH10)|2 | |
|
| 73 | -|[NBEAL1](NBEAL1)|2 | |
|
| 74 | -|[NOTCH1](NOTCH1)|2 | |
|
| 75 | -|[NRXN2](NRXN2)|2 | |
|
| 76 | -|[P2RY2](P2RY2)|2 | |
|
| 77 | -|[PC](PC)|2 | |
|
| 78 | -|[POLRMT](POLRMT)|2 | |
|
| 79 | -|[POR](POR)|2 | |
|
| 80 | -|[PRSS22](PRSS22)|2 | |
|
| 81 | -|[PTEN](PTEN)|1 | |
|
| 82 | -|[PTPRN](PTPRN)|2 | |
|
| 83 | -|[RANBP6](RANBP6)|2 | |
|
| 84 | -|[RBP3](RBP3)|2 | |
|
| 85 | -|[RET](RET)|2 | |
|
| 86 | -|[SALL3](SALL3)|2 | |
|
| 87 | -|[SAPS2](SAPS2)|2 | |
|
| 88 | -|[SBF1](SBF1)|2 | |
|
| 89 | -|[SF3B1](SF3B1)|2 | |
|
| 90 | -|[SHANK1](SHANK1)|2 | |
|
| 91 | -|[SLC29A2](SLC29A2)|2 | |
|
| 92 | -|[SYNGAP1](SYNGAP1)|2 | |
|
| 93 | -|[TBC1D9B](TBC1D9B)|2 | |
|
| 94 | -|[TIGD6](TIGD6)|2 | |
|
| 95 | -|[TPST2](TPST2)|2 | |
|
| 96 | -|[ZNF229](ZNF229)|2 | |
|
| 38 | +|[ACAD9](../ACAD9)|2 | |
|
| 39 | +|[ACE](../ACE)|2 | |
|
| 40 | +|[ARID1A](../ARID1A)|1 | |
|
| 41 | +|[ATP2C2](../ATP2C2)|2 | |
|
| 42 | +|[BCL6](../BCL6)|2 | |
|
| 43 | +|[BRAF](../BRAF)|2 | |
|
| 44 | +|[BRD4](../BRD4)|2 | |
|
| 45 | +|[BTG2](../BTG2)|2 | |
|
| 46 | +|[C6orf27](../C6orf27)|2 | |
|
| 47 | +|[CAD](../CAD)|2 | |
|
| 48 | +|[CARD4](../CARD4)|2 | |
|
| 49 | +|[CCT6B](../CCT6B)|2 | |
|
| 50 | +|[CDC73](../CDC73)|2 | |
|
| 51 | +|[CDH17](../CDH17)|2 | |
|
| 52 | +|[COL4A2](../COL4A2)|2 | |
|
| 53 | +|[CREBBP](../CREBBP)|2 | |
|
| 54 | +|[CYB5D1](../CYB5D1)|2 | |
|
| 55 | +|[CYP4F22](../CYP4F22)|2 | |
|
| 56 | +|[DLGAP1](../DLGAP1)|2 | |
|
| 57 | +|[EIF2C4](../EIF2C4)|2 | |
|
| 58 | +|[EML2](../EML2)|2 | |
|
| 59 | +|[ENTPD3](../ENTPD3)|2 | |
|
| 60 | +|[EPHB2](../EPHB2)|2 | |
|
| 61 | +|[EZH2](../EZH2)|2 | |
|
| 62 | +|[FAM129B](../FAM129B)|2 | |
|
| 63 | +|[FGFR3](../FGFR3)|2 | |
|
| 64 | +|[FTCD](../FTCD)|2 | |
|
| 65 | +|[GGTLA4](../GGTLA4)|2 | |
|
| 66 | +|[GNA13](../GNA13)|1 | |
|
| 67 | +|[GRIK5](../GRIK5)|2 | |
|
| 68 | +|[ICK](../ICK)|2 | |
|
| 69 | +|[ITPR3](../ITPR3)|2 | |
|
| 70 | +|[KIFC3](../KIFC3)|2 | |
|
| 71 | +|[MAP3K6](../MAP3K6)|2 | |
|
| 72 | +|[MYH10](../MYH10)|2 | |
|
| 73 | +|[NBEAL1](../NBEAL1)|2 | |
|
| 74 | +|[NOTCH1](../NOTCH1)|2 | |
|
| 75 | +|[NRXN2](../NRXN2)|2 | |
|
| 76 | +|[P2RY2](../P2RY2)|2 | |
|
| 77 | +|[PC](../PC)|2 | |
|
| 78 | +|[POLRMT](../POLRMT)|2 | |
|
| 79 | +|[POR](../POR)|2 | |
|
| 80 | +|[PRSS22](../PRSS22)|2 | |
|
| 81 | +|[PTEN](../PTEN)|1 | |
|
| 82 | +|[PTPRN](../PTPRN)|2 | |
|
| 83 | +|[RANBP6](../RANBP6)|2 | |
|
| 84 | +|[RBP3](../RBP3)|2 | |
|
| 85 | +|[RET](../RET)|2 | |
|
| 86 | +|[SALL3](../SALL3)|2 | |
|
| 87 | +|[SAPS2](../SAPS2)|2 | |
|
| 88 | +|[SBF1](../SBF1)|2 | |
|
| 89 | +|[SF3B1](../SF3B1)|2 | |
|
| 90 | +|[SHANK1](../SHANK1)|2 | |
|
| 91 | +|[SLC29A2](../SLC29A2)|2 | |
|
| 92 | +|[SYNGAP1](../SYNGAP1)|2 | |
|
| 93 | +|[TBC1D9B](../TBC1D9B)|2 | |
|
| 94 | +|[TIGD6](../TIGD6)|2 | |
|
| 95 | +|[TPST2](../TPST2)|2 | |
|
| 96 | +|[ZNF229](../ZNF229)|2 | |
|
| 97 | 97 | |
| 98 | 98 | # Details |
| 99 | 99 |
papers/mansouriFrequentNFKBIEDeletions2016.md
| ... | ... | @@ -35,7 +35,7 @@ All other PMBL studies, PMBL Tier 2, 82 |
| 35 | 35 | |
| 36 | 36 | |New gene|PMBL tier| |
| 37 | 37 | |:-|:-:| |
| 38 | -|[NFKBIE](NFKBIE)|1 | |
|
| 38 | +|[NFKBIE](../NFKBIE)|1 | |
|
| 39 | 39 | |
| 40 | 40 | # Details |
| 41 | 41 |
papers/mareschalWholeExomeSequencing2016.md
| ... | ... | @@ -35,8 +35,8 @@ All other DLBCL studies, DLBCL Tier 2, 198 |
| 35 | 35 | |
| 36 | 36 | |New gene|DLBCL tier| |
| 37 | 37 | |:-|:-:| |
| 38 | -|[TBL1XR1](TBL1XR1)|1 | |
|
| 39 | -|[XPO1](XPO1)|1 | |
|
| 38 | +|[TBL1XR1](../TBL1XR1)|1 | |
|
| 39 | +|[XPO1](../XPO1)|1 | |
|
| 40 | 40 | |
| 41 | 41 | # Details |
| 42 | 42 |
papers/morinFrequentMutationHistonemodifying2011.md
| ... | ... | @@ -36,34 +36,34 @@ All other DLBCL studies, DLBCL Tier 2, 197 |
| 36 | 36 | |
| 37 | 37 | |New gene|DLBCL tier|FL tier| |
| 38 | 38 | |:-|:-:|:-:| |
| 39 | -|[B2M](B2M)|1 |1 | |
|
| 40 | -|[BCL10](BCL10)|1 |2 | |
|
| 41 | -|[BCL2](BCL2)|1 |1 | |
|
| 42 | -|[BCL6](BCL6)|1 |1 | |
|
| 43 | -|[BTG1](BTG1)|1 |1 | |
|
| 44 | -|[BTG2](BTG2)|1 |1 | |
|
| 45 | -|[CARD11](CARD11)|1 |1 | |
|
| 46 | -|[CCND3](CCND3)|1 |1 | |
|
| 47 | -|[CD274](CD274)|2 | | |
|
| 48 | -|[CD58](CD58)|1 | | |
|
| 49 | -|[CD70](CD70)|1 |2 | |
|
| 50 | -|[CD79B](CD79B)|1 |2 | |
|
| 51 | -|[CIITA](CIITA)|1 | | |
|
| 52 | -|[ETS1](ETS1)|1 | | |
|
| 53 | -|[FOXO1](FOXO1)|1 |1 | |
|
| 54 | -|[GNA13](GNA13)|1 |1 | |
|
| 55 | -|[HIST1H1C](HIST1H1C)|1 |1 | |
|
| 56 | -|[IRF4](IRF4)|1 |1 | |
|
| 57 | -|[IRF8](IRF8)|1 |1 | |
|
| 58 | -|[KLHL6](KLHL6)|1 |1 | |
|
| 59 | -|[KMT2D](KMT2D)|1 |1 | |
|
| 60 | -|[MEF2B](MEF2B)|1 |1 | |
|
| 61 | -|[S1PR2](S1PR2)|1 |1 | |
|
| 62 | -|[SGK1](SGK1)|1 |1 | |
|
| 63 | -|[SOCS1](SOCS1)|1 |1 | |
|
| 64 | -|[TMEM30A](TMEM30A)|1 |2 | |
|
| 65 | -|[TP53](TP53)|1 |1 | |
|
| 66 | -|[ZFP36L1](ZFP36L1)|1 | | |
|
| 39 | +|[B2M](../B2M)|1 |1 | |
|
| 40 | +|[BCL10](../BCL10)|1 |2 | |
|
| 41 | +|[BCL2](../BCL2)|1 |1 | |
|
| 42 | +|[BCL6](../BCL6)|1 |1 | |
|
| 43 | +|[BTG1](../BTG1)|1 |1 | |
|
| 44 | +|[BTG2](../BTG2)|1 |1 | |
|
| 45 | +|[CARD11](../CARD11)|1 |1 | |
|
| 46 | +|[CCND3](../CCND3)|1 |1 | |
|
| 47 | +|[CD274](../CD274)|2 | | |
|
| 48 | +|[CD58](../CD58)|1 | | |
|
| 49 | +|[CD70](../CD70)|1 |2 | |
|
| 50 | +|[CD79B](../CD79B)|1 |2 | |
|
| 51 | +|[CIITA](../CIITA)|1 | | |
|
| 52 | +|[ETS1](../ETS1)|1 | | |
|
| 53 | +|[FOXO1](../FOXO1)|1 |1 | |
|
| 54 | +|[GNA13](../GNA13)|1 |1 | |
|
| 55 | +|[HIST1H1C](../HIST1H1C)|1 |1 | |
|
| 56 | +|[IRF4](../IRF4)|1 |1 | |
|
| 57 | +|[IRF8](../IRF8)|1 |1 | |
|
| 58 | +|[KLHL6](../KLHL6)|1 |1 | |
|
| 59 | +|[KMT2D](../KMT2D)|1 |1 | |
|
| 60 | +|[MEF2B](../MEF2B)|1 |1 | |
|
| 61 | +|[S1PR2](../S1PR2)|1 |1 | |
|
| 62 | +|[SGK1](../SGK1)|1 |1 | |
|
| 63 | +|[SOCS1](../SOCS1)|1 |1 | |
|
| 64 | +|[TMEM30A](../TMEM30A)|1 |2 | |
|
| 65 | +|[TP53](../TP53)|1 |1 | |
|
| 66 | +|[ZFP36L1](../ZFP36L1)|1 | | |
|
| 67 | 67 | |
| 68 | 68 | # Details |
| 69 | 69 |
papers/morinGeneticLandscapesRelapsed2016.md
| ... | ... | @@ -35,8 +35,8 @@ All other DLBCL studies, DLBCL Tier 2, 198 |
| 35 | 35 | |
| 36 | 36 | |New gene|DLBCL tier| |
| 37 | 37 | |:-|:-:| |
| 38 | -|[NFKBIE](NFKBIE)|1 | |
|
| 39 | -|[NFKBIZ](NFKBIZ)|1 | |
|
| 38 | +|[NFKBIE](../NFKBIE)|1 | |
|
| 39 | +|[NFKBIZ](../NFKBIZ)|1 | |
|
| 40 | 40 | |
| 41 | 41 | # Details |
| 42 | 42 |
papers/morinMutationalStructuralAnalysis2013.md
| ... | ... | @@ -35,46 +35,46 @@ All other DLBCL studies, DLBCL Tier 2, 169 |
| 35 | 35 | |
| 36 | 36 | |New gene|DLBCL tier| |
| 37 | 37 | |:-|:-:| |
| 38 | -|[ABI3BP](ABI3BP)|2 | |
|
| 39 | -|[CD83](CD83)|1 | |
|
| 40 | -|[CDH9](CDH9)|2 | |
|
| 41 | -|[CDKN2A](CDKN2A)|1 | |
|
| 42 | -|[CNTNAP5](CNTNAP5)|2 | |
|
| 43 | -|[DNAH5](DNAH5)|2 | |
|
| 44 | -|[DSG4](DSG4)|2 | |
|
| 45 | -|[DUSP2](DUSP2)|1 | |
|
| 46 | -|[FAM38B](FAM38B)|2 | |
|
| 47 | -|[FAT4](FAT4)|2 | |
|
| 48 | -|[FNDC1](FNDC1)|2 | |
|
| 49 | -|[GNAI2](GNAI2)|1 | |
|
| 50 | -|[HDAC7](HDAC7)|2 | |
|
| 51 | -|[HIST1H1D](HIST1H1D)|1 | |
|
| 52 | -|[HIST1H1E](HIST1H1E)|1 | |
|
| 53 | -|[HIST1H2AC](HIST1H2AC)|1 | |
|
| 54 | -|[HIST1H2AG](HIST1H2AG)|2 | |
|
| 55 | -|[IER2](IER2)|2 | |
|
| 56 | -|[IFNGR1](IFNGR1)|2 | |
|
| 57 | -|[IKZF3](IKZF3)|1 | |
|
| 58 | -|[LRRN3](LRRN3)|2 | |
|
| 59 | -|[MPDZ](MPDZ)|2 | |
|
| 60 | -|[MPEG1](MPEG1)|1 | |
|
| 61 | -|[NLRP5](NLRP5)|2 | |
|
| 62 | -|[ODZ3](ODZ3)|2 | |
|
| 63 | -|[P2RX5](P2RX5)|2 | |
|
| 64 | -|[PASK](PASK)|2 | |
|
| 65 | -|[PCDHB11](PCDHB11)|2 | |
|
| 66 | -|[PDS5B](PDS5B)|2 | |
|
| 67 | -|[PKD1](PKD1)|2 | |
|
| 68 | -|[POGZ](POGZ)|2 | |
|
| 69 | -|[PRKCB](PRKCB)|2 | |
|
| 70 | -|[PTPN23](PTPN23)|2 | |
|
| 71 | -|[RB1](RB1)|1 | |
|
| 72 | -|[SAMD9L](SAMD9L)|2 | |
|
| 73 | -|[SARM1](SARM1)|2 | |
|
| 74 | -|[SRRM2](SRRM2)|2 | |
|
| 75 | -|[SYPL1](SYPL1)|2 | |
|
| 76 | -|[TAF1](TAF1)|1 | |
|
| 77 | -|[WDFY3](WDFY3)|2 | |
|
| 38 | +|[ABI3BP](../ABI3BP)|2 | |
|
| 39 | +|[CD83](../CD83)|1 | |
|
| 40 | +|[CDH9](../CDH9)|2 | |
|
| 41 | +|[CDKN2A](../CDKN2A)|1 | |
|
| 42 | +|[CNTNAP5](../CNTNAP5)|2 | |
|
| 43 | +|[DNAH5](../DNAH5)|2 | |
|
| 44 | +|[DSG4](../DSG4)|2 | |
|
| 45 | +|[DUSP2](../DUSP2)|1 | |
|
| 46 | +|[FAM38B](../FAM38B)|2 | |
|
| 47 | +|[FAT4](../FAT4)|2 | |
|
| 48 | +|[FNDC1](../FNDC1)|2 | |
|
| 49 | +|[GNAI2](../GNAI2)|1 | |
|
| 50 | +|[HDAC7](../HDAC7)|2 | |
|
| 51 | +|[HIST1H1D](../HIST1H1D)|1 | |
|
| 52 | +|[HIST1H1E](../HIST1H1E)|1 | |
|
| 53 | +|[HIST1H2AC](../HIST1H2AC)|1 | |
|
| 54 | +|[HIST1H2AG](../HIST1H2AG)|2 | |
|
| 55 | +|[IER2](../IER2)|2 | |
|
| 56 | +|[IFNGR1](../IFNGR1)|2 | |
|
| 57 | +|[IKZF3](../IKZF3)|1 | |
|
| 58 | +|[LRRN3](../LRRN3)|2 | |
|
| 59 | +|[MPDZ](../MPDZ)|2 | |
|
| 60 | +|[MPEG1](../MPEG1)|1 | |
|
| 61 | +|[NLRP5](../NLRP5)|2 | |
|
| 62 | +|[ODZ3](../ODZ3)|2 | |
|
| 63 | +|[P2RX5](../P2RX5)|2 | |
|
| 64 | +|[PASK](../PASK)|2 | |
|
| 65 | +|[PCDHB11](../PCDHB11)|2 | |
|
| 66 | +|[PDS5B](../PDS5B)|2 | |
|
| 67 | +|[PKD1](../PKD1)|2 | |
|
| 68 | +|[POGZ](../POGZ)|2 | |
|
| 69 | +|[PRKCB](../PRKCB)|2 | |
|
| 70 | +|[PTPN23](../PTPN23)|2 | |
|
| 71 | +|[RB1](../RB1)|1 | |
|
| 72 | +|[SAMD9L](../SAMD9L)|2 | |
|
| 73 | +|[SARM1](../SARM1)|2 | |
|
| 74 | +|[SRRM2](../SRRM2)|2 | |
|
| 75 | +|[SYPL1](../SYPL1)|2 | |
|
| 76 | +|[TAF1](../TAF1)|1 | |
|
| 77 | +|[WDFY3](../WDFY3)|2 | |
|
| 78 | 78 | |
| 79 | 79 | # Details |
| 80 | 80 |
papers/morinSomaticMutationsAltering2010a.md
| ... | ... | @@ -24,11 +24,11 @@ config: |
| 24 | 24 | --- |
| 25 | 25 | sankey-beta |
| 26 | 26 | This study, New Tier 1, 1 |
| 27 | -New Tier 1, FL Tier 1, 1 |
|
| 27 | +New Tier 1, DLBCL Tier 1, 1 |
|
| 28 | 28 | This study, New Tier 2, 0 |
| 29 | -New Tier 2, FL Tier 2, 0 |
|
| 30 | -All other FL studies, FL Tier 1, 65 |
|
| 31 | -All other FL studies, FL Tier 2, 50 |
|
| 29 | +New Tier 2, DLBCL Tier 2, 0 |
|
| 30 | +All other DLBCL studies, DLBCL Tier 1, 127 |
|
| 31 | +All other DLBCL studies, DLBCL Tier 2, 198 |
|
| 32 | 32 | ``` |
| 33 | 33 | |
| 34 | 34 | |
| ... | ... | @@ -36,7 +36,7 @@ All other FL studies, FL Tier 2, 50 |
| 36 | 36 | |
| 37 | 37 | |New gene|DLBCL tier|FL tier| |
| 38 | 38 | |:-|:-:|:-:| |
| 39 | -|[EZH2](EZH2)|1 |1 | |
|
| 39 | +|[EZH2](../EZH2)|1 |1 | |
|
| 40 | 40 | |
| 41 | 41 | # Details |
| 42 | 42 |
papers/mottokGenomicAlterationsCIITA2015b.md
| ... | ... | @@ -35,7 +35,7 @@ All other PMBL studies, PMBL Tier 2, 82 |
| 35 | 35 | |
| 36 | 36 | |New gene|PMBL tier| |
| 37 | 37 | |:-|:-:| |
| 38 | -|[CIITA](CIITA)|1 | |
|
| 38 | +|[CIITA](../CIITA)|1 | |
|
| 39 | 39 | |
| 40 | 40 | # Details |
| 41 | 41 |
papers/mottokIntegrativeGenomicAnalysis2019b.md
| ... | ... | @@ -35,27 +35,27 @@ All other PMBL studies, PMBL Tier 2, 67 |
| 35 | 35 | |
| 36 | 36 | |New gene|PMBL tier| |
| 37 | 37 | |:-|:-:| |
| 38 | -|[CISH](CISH)|1 | |
|
| 39 | -|[CXCR5](CXCR5)|2 | |
|
| 40 | -|[DDX3X](DDX3X)|1 | |
|
| 41 | -|[EPHA7](EPHA7)|2 | |
|
| 42 | -|[EZH2](EZH2)|1 | |
|
| 43 | -|[GCSAM](GCSAM)|2 | |
|
| 44 | -|[HIST1H2BC](HIST1H2BC)|2 | |
|
| 45 | -|[HIST1H4E](HIST1H4E)|2 | |
|
| 46 | -|[HIST1H4J](HIST1H4J)|2 | |
|
| 47 | -|[IL13RA1](IL13RA1)|2 | |
|
| 48 | -|[IL1RAPL2](IL1RAPL2)|2 | |
|
| 49 | -|[IRF2BP2](IRF2BP2)|2 | |
|
| 50 | -|[IRF4](IRF4)|2 | |
|
| 51 | -|[IRF8](IRF8)|1 | |
|
| 52 | -|[JAK1](JAK1)|1 | |
|
| 53 | -|[JUNB](JUNB)|2 | |
|
| 54 | -|[MAGEC2](MAGEC2)|2 | |
|
| 55 | -|[MS4A1](MS4A1)|1 | |
|
| 56 | -|[NFKB2](NFKB2)|2 | |
|
| 57 | -|[RGS1](RGS1)|2 | |
|
| 58 | -|[VMP1](VMP1)|2 | |
|
| 38 | +|[CISH](../CISH)|1 | |
|
| 39 | +|[CXCR5](../CXCR5)|2 | |
|
| 40 | +|[DDX3X](../DDX3X)|1 | |
|
| 41 | +|[EPHA7](../EPHA7)|2 | |
|
| 42 | +|[EZH2](../EZH2)|1 | |
|
| 43 | +|[GCSAM](../GCSAM)|2 | |
|
| 44 | +|[HIST1H2BC](../HIST1H2BC)|2 | |
|
| 45 | +|[HIST1H4E](../HIST1H4E)|2 | |
|
| 46 | +|[HIST1H4J](../HIST1H4J)|2 | |
|
| 47 | +|[IL13RA1](../IL13RA1)|2 | |
|
| 48 | +|[IL1RAPL2](../IL1RAPL2)|2 | |
|
| 49 | +|[IRF2BP2](../IRF2BP2)|2 | |
|
| 50 | +|[IRF4](../IRF4)|2 | |
|
| 51 | +|[IRF8](../IRF8)|1 | |
|
| 52 | +|[JAK1](../JAK1)|1 | |
|
| 53 | +|[JUNB](../JUNB)|2 | |
|
| 54 | +|[MAGEC2](../MAGEC2)|2 | |
|
| 55 | +|[MS4A1](../MS4A1)|1 | |
|
| 56 | +|[NFKB2](../NFKB2)|2 | |
|
| 57 | +|[RGS1](../RGS1)|2 | |
|
| 58 | +|[VMP1](../VMP1)|2 | |
|
| 59 | 59 | |
| 60 | 60 | # Details |
| 61 | 61 |
papers/muppidiLossSignalingGa132014b.md
| ... | ... | @@ -35,9 +35,9 @@ All other BL studies, BL Tier 2, 155 |
| 35 | 35 | |
| 36 | 36 | |New gene|BL tier| |
| 37 | 37 | |:-|:-:| |
| 38 | -|[ARHGEF1](ARHGEF1)|2 | |
|
| 39 | -|[P2RY8](P2RY8)|1 | |
|
| 40 | -|[S1PR2](S1PR2)|2 | |
|
| 38 | +|[ARHGEF1](../ARHGEF1)|2 | |
|
| 39 | +|[P2RY8](../P2RY8)|1 | |
|
| 40 | +|[S1PR2](../S1PR2)|2 | |
|
| 41 | 41 | |
| 42 | 42 | # Details |
| 43 | 43 |
papers/nadeuGenomicEpigenomicInsights2020b.md
| ... | ... | @@ -35,11 +35,11 @@ All other MCL studies, MCL Tier 2, 44 |
| 35 | 35 | |
| 36 | 36 | |New gene|MCL tier| |
| 37 | 37 | |:-|:-:| |
| 38 | -|[BCOR](BCOR)|2 | |
|
| 39 | -|[SMARCA4](SMARCA4)|1 | |
|
| 40 | -|[SMARCB1](SMARCB1)|2 | |
|
| 41 | -|[SYNE1](SYNE1)|1 | |
|
| 42 | -|[TERT](TERT)|1 | |
|
| 38 | +|[BCOR](../BCOR)|2 | |
|
| 39 | +|[SMARCA4](../SMARCA4)|1 | |
|
| 40 | +|[SMARCB1](../SMARCB1)|2 | |
|
| 41 | +|[SYNE1](../SYNE1)|1 | |
|
| 42 | +|[TERT](../TERT)|1 | |
|
| 43 | 43 | |
| 44 | 44 | # Details |
| 45 | 45 |
papers/ngoOncogenicallyActiveMYD882011a.md
| ... | ... | @@ -35,7 +35,7 @@ All other DLBCL studies, DLBCL Tier 2, 198 |
| 35 | 35 | |
| 36 | 36 | |New gene|DLBCL tier| |
| 37 | 37 | |:-|:-:| |
| 38 | -|[MYD88](MYD88)|1 | |
|
| 38 | +|[MYD88](../MYD88)|1 | |
|
| 39 | 39 | |
| 40 | 40 | # Details |
| 41 | 41 |
papers/ohgamiSTAT3MutationsAre2014.md
| ... | ... | @@ -35,7 +35,7 @@ All other DLBCL studies, DLBCL Tier 2, 198 |
| 35 | 35 | |
| 36 | 36 | |New gene|DLBCL tier| |
| 37 | 37 | |:-|:-:| |
| 38 | -|[STAT3](STAT3)|1 | |
|
| 38 | +|[STAT3](../STAT3)|1 | |
|
| 39 | 39 | |
| 40 | 40 | # Details |
| 41 | 41 |
papers/okosunRecurrentMTORC1activatingRRAGC2016a.md
| ... | ... | @@ -8,8 +8,8 @@ bibliography: 'morinlab.bib' |
| 8 | 8 | |
| 9 | 9 | |Entity| Tier 1 genes| Tier 2 genes| |
| 10 | 10 | |:-:|:-:|:-:| |
| 11 | -|DLBCL|1|0| |
|
| 12 | 11 | |FL|3|0| |
| 12 | +|DLBCL|1|0| |
|
| 13 | 13 | ```mermaid |
| 14 | 14 | --- |
| 15 | 15 | config: |
| ... | ... | @@ -34,11 +34,11 @@ All other FL studies, FL Tier 2, 50 |
| 34 | 34 | |
| 35 | 35 | ## Novel genes reported in this study |
| 36 | 36 | |
| 37 | -|New gene|DLBCL tier|FL tier| |
|
| 37 | +|New gene|FL tier|DLBCL tier| |
|
| 38 | 38 | |:-|:-:|:-:| |
| 39 | -|[ATP6AP1](ATP6AP1)| |1 | |
|
| 40 | -|[ATP6V1B2](ATP6V1B2)| |1 | |
|
| 41 | -|[RRAGC](RRAGC)|1 |1 | |
|
| 39 | +|[ATP6AP1](../ATP6AP1)|1 | | |
|
| 40 | +|[ATP6V1B2](../ATP6V1B2)|1 | | |
|
| 41 | +|[RRAGC](../RRAGC)|1 |1 | |
|
| 42 | 42 | |
| 43 | 43 | # Details |
| 44 | 44 |
papers/oricchioGeneticEpigeneticInactivation2017b.md
| ... | ... | @@ -35,7 +35,7 @@ All other FL studies, FL Tier 2, 49 |
| 35 | 35 | |
| 36 | 36 | |New gene|FL tier| |
| 37 | 37 | |:-|:-:| |
| 38 | -|[SESN1](SESN1)|2 | |
|
| 38 | +|[SESN1](../SESN1)|2 | |
|
| 39 | 39 | |
| 40 | 40 | # Details |
| 41 | 41 |
papers/ottoGeneticLesionsTRAF32012a.md
| ... | ... | @@ -35,8 +35,8 @@ All other PMBL studies, PMBL Tier 2, 82 |
| 35 | 35 | |
| 36 | 36 | |New gene|PMBL tier| |
| 37 | 37 | |:-|:-:| |
| 38 | -|[MAP3K14](MAP3K14)|1 | |
|
| 39 | -|[TRAF3](TRAF3)|1 | |
|
| 38 | +|[MAP3K14](../MAP3K14)|1 | |
|
| 39 | +|[TRAF3](../TRAF3)|1 | |
|
| 40 | 40 | |
| 41 | 41 | # Details |
| 42 | 42 |
papers/paneaWholeGenomeLandscape2019.md
| ... | ... | @@ -35,56 +35,56 @@ All other BL studies, BL Tier 2, 111 |
| 35 | 35 | |
| 36 | 36 | |New gene|BL tier| |
| 37 | 37 | |:-|:-:| |
| 38 | -|[ALPK2](ALPK2)|2 | |
|
| 39 | -|[BMP7](BMP7)|1 | |
|
| 40 | -|[CARD11](CARD11)|2 | |
|
| 41 | -|[CD79B](CD79B)|2 | |
|
| 42 | -|[CD83](CD83)|2 | |
|
| 43 | -|[CTCF](CTCF)|2 | |
|
| 44 | -|[CXCR4](CXCR4)|2 | |
|
| 45 | -|[DNMT1](DNMT1)|2 | |
|
| 46 | -|[DTX1](DTX1)|2 | |
|
| 47 | -|[EIF4A1](EIF4A1)|1 | |
|
| 48 | -|[EP300](EP300)|2 | |
|
| 49 | -|[EPPK1](EPPK1)|1 | |
|
| 50 | -|[ETS1](ETS1)|2 | |
|
| 51 | -|[FZD3](FZD3)|2 | |
|
| 52 | -|[GRB2](GRB2)|2 | |
|
| 53 | -|[HIST1H1C](HIST1H1C)|2 | |
|
| 54 | -|[HIST1H2AG](HIST1H2AG)|2 | |
|
| 55 | -|[HIST1H2AM](HIST1H2AM)|2 | |
|
| 56 | -|[HIST1H2BK](HIST1H2BK)|2 | |
|
| 57 | -|[HIST1H3D](HIST1H3D)|2 | |
|
| 58 | -|[HIST1H3H](HIST1H3H)|2 | |
|
| 59 | -|[HIST1H3I](HIST1H3I)|2 | |
|
| 60 | -|[HIST1H3J](HIST1H3J)|2 | |
|
| 61 | -|[HIST1H4J](HIST1H4J)|2 | |
|
| 62 | -|[HNRNPU](HNRNPU)|1 | |
|
| 63 | -|[IGLL5](IGLL5)|2 | |
|
| 64 | -|[IKZF3](IKZF3)|2 | |
|
| 65 | -|[IRF8](IRF8)|2 | |
|
| 66 | -|[KCNK10](KCNK10)|2 | |
|
| 67 | -|[KLHL6](KLHL6)|2 | |
|
| 68 | -|[LTB](LTB)|2 | |
|
| 69 | -|[MCL1](MCL1)|2 | |
|
| 70 | -|[MME](MME)|2 | |
|
| 71 | -|[MTOR](MTOR)|2 | |
|
| 72 | -|[NOTCH2](NOTCH2)|2 | |
|
| 73 | -|[PABPC4L](PABPC4L)|2 | |
|
| 74 | -|[PCDHA11](PCDHA11)|2 | |
|
| 75 | -|[PDZRN3](PDZRN3)|2 | |
|
| 76 | -|[PIK3R1](PIK3R1)|2 | |
|
| 77 | -|[PLCG2](PLCG2)|2 | |
|
| 78 | -|[PXDNL](PXDNL)|2 | |
|
| 79 | -|[RAC2](RAC2)|2 | |
|
| 80 | -|[RNF144B](RNF144B)|2 | |
|
| 81 | -|[SNTB2](SNTB2)|2 | |
|
| 82 | -|[SP3](SP3)|2 | |
|
| 83 | -|[SYNCRIP](SYNCRIP)|2 | |
|
| 84 | -|[TET2](TET2)|2 | |
|
| 85 | -|[WDR7](WDR7)|2 | |
|
| 86 | -|[WNK2](WNK2)|2 | |
|
| 87 | -|[ZFP36L1](ZFP36L1)|2 | |
|
| 38 | +|[ALPK2](../ALPK2)|2 | |
|
| 39 | +|[BMP7](../BMP7)|1 | |
|
| 40 | +|[CARD11](../CARD11)|2 | |
|
| 41 | +|[CD79B](../CD79B)|2 | |
|
| 42 | +|[CD83](../CD83)|2 | |
|
| 43 | +|[CTCF](../CTCF)|2 | |
|
| 44 | +|[CXCR4](../CXCR4)|2 | |
|
| 45 | +|[DNMT1](../DNMT1)|2 | |
|
| 46 | +|[DTX1](../DTX1)|2 | |
|
| 47 | +|[EIF4A1](../EIF4A1)|1 | |
|
| 48 | +|[EP300](../EP300)|2 | |
|
| 49 | +|[EPPK1](../EPPK1)|1 | |
|
| 50 | +|[ETS1](../ETS1)|2 | |
|
| 51 | +|[FZD3](../FZD3)|2 | |
|
| 52 | +|[GRB2](../GRB2)|2 | |
|
| 53 | +|[HIST1H1C](../HIST1H1C)|2 | |
|
| 54 | +|[HIST1H2AG](../HIST1H2AG)|2 | |
|
| 55 | +|[HIST1H2AM](../HIST1H2AM)|2 | |
|
| 56 | +|[HIST1H2BK](../HIST1H2BK)|2 | |
|
| 57 | +|[HIST1H3D](../HIST1H3D)|2 | |
|
| 58 | +|[HIST1H3H](../HIST1H3H)|2 | |
|
| 59 | +|[HIST1H3I](../HIST1H3I)|2 | |
|
| 60 | +|[HIST1H3J](../HIST1H3J)|2 | |
|
| 61 | +|[HIST1H4J](../HIST1H4J)|2 | |
|
| 62 | +|[HNRNPU](../HNRNPU)|1 | |
|
| 63 | +|[IGLL5](../IGLL5)|2 | |
|
| 64 | +|[IKZF3](../IKZF3)|2 | |
|
| 65 | +|[IRF8](../IRF8)|2 | |
|
| 66 | +|[KCNK10](../KCNK10)|2 | |
|
| 67 | +|[KLHL6](../KLHL6)|2 | |
|
| 68 | +|[LTB](../LTB)|2 | |
|
| 69 | +|[MCL1](../MCL1)|2 | |
|
| 70 | +|[MME](../MME)|2 | |
|
| 71 | +|[MTOR](../MTOR)|2 | |
|
| 72 | +|[NOTCH2](../NOTCH2)|2 | |
|
| 73 | +|[PABPC4L](../PABPC4L)|2 | |
|
| 74 | +|[PCDHA11](../PCDHA11)|2 | |
|
| 75 | +|[PDZRN3](../PDZRN3)|2 | |
|
| 76 | +|[PIK3R1](../PIK3R1)|2 | |
|
| 77 | +|[PLCG2](../PLCG2)|2 | |
|
| 78 | +|[PXDNL](../PXDNL)|2 | |
|
| 79 | +|[RAC2](../RAC2)|2 | |
|
| 80 | +|[RNF144B](../RNF144B)|2 | |
|
| 81 | +|[SNTB2](../SNTB2)|2 | |
|
| 82 | +|[SP3](../SP3)|2 | |
|
| 83 | +|[SYNCRIP](../SYNCRIP)|2 | |
|
| 84 | +|[TET2](../TET2)|2 | |
|
| 85 | +|[WDR7](../WDR7)|2 | |
|
| 86 | +|[WNK2](../WNK2)|2 | |
|
| 87 | +|[ZFP36L1](../ZFP36L1)|2 | |
|
| 88 | 88 | |
| 89 | 89 | # Details |
| 90 | 90 |
papers/pararajalingamCodingNoncodingDrivers2020.md
| ... | ... | @@ -36,13 +36,13 @@ All other MCL studies, MCL Tier 2, 45 |
| 36 | 36 | |
| 37 | 37 | |New gene|DLBCL tier|MCL tier| |
| 38 | 38 | |:-|:-:|:-:| |
| 39 | -|[B2M](B2M)|1 |2 | |
|
| 40 | -|[DAZAP1](DAZAP1)|2 |1 | |
|
| 41 | -|[EWSR1](EWSR1)| |1 | |
|
| 42 | -|[HNRNPH1](HNRNPH1)|2 |1 | |
|
| 43 | -|[NFKBIE](NFKBIE)|1 |1 | |
|
| 44 | -|[S1PR1](S1PR1)| |1 | |
|
| 45 | -|[UBR5](UBR5)|2 |1 | |
|
| 39 | +|[B2M](../B2M)|1 |2 | |
|
| 40 | +|[DAZAP1](../DAZAP1)|2 |1 | |
|
| 41 | +|[EWSR1](../EWSR1)| |1 | |
|
| 42 | +|[HNRNPH1](../HNRNPH1)|2 |1 | |
|
| 43 | +|[NFKBIE](../NFKBIE)|1 |1 | |
|
| 44 | +|[S1PR1](../S1PR1)| |1 | |
|
| 45 | +|[UBR5](../UBR5)|2 |1 | |
|
| 46 | 46 | |
| 47 | 47 | # Details |
| 48 | 48 |
papers/parryWholeExomeSequencing2013.md
| ... | ... | @@ -36,14 +36,14 @@ All other MZL studies, MZL Tier 2, 66 |
| 36 | 36 | |
| 37 | 37 | |New gene|MZL tier|DLBCL tier| |
| 38 | 38 | |:-|:-:|:-:| |
| 39 | -|[AMOTL1](AMOTL1)|2 | | |
|
| 40 | -|[CBFA2T3](CBFA2T3)|2 | | |
|
| 41 | -|[CREBBP](CREBBP)|2 |1 | |
|
| 42 | -|[FAT4](FAT4)|2 |2 | |
|
| 43 | -|[FBXO11](FBXO11)|2 |1 | |
|
| 44 | -|[PLA2G4D](PLA2G4D)|2 | | |
|
| 45 | -|[TRRAP](TRRAP)|2 |1 | |
|
| 46 | -|[USH2A](USH2A)|2 | | |
|
| 39 | +|[AMOTL1](../AMOTL1)|2 | | |
|
| 40 | +|[CBFA2T3](../CBFA2T3)|2 | | |
|
| 41 | +|[CREBBP](../CREBBP)|2 |1 | |
|
| 42 | +|[FAT4](../FAT4)|2 |2 | |
|
| 43 | +|[FBXO11](../FBXO11)|2 |1 | |
|
| 44 | +|[PLA2G4D](../PLA2G4D)|2 | | |
|
| 45 | +|[TRRAP](../TRRAP)|2 |1 | |
|
| 46 | +|[USH2A](../USH2A)|2 | | |
|
| 47 | 47 | |
| 48 | 48 | # Details |
| 49 | 49 |
papers/pasqualucciAnalysisCodingGenome2011.md
| ... | ... | @@ -35,13 +35,13 @@ All other DLBCL studies, DLBCL Tier 2, 194 |
| 35 | 35 | |
| 36 | 36 | |New gene|DLBCL tier| |
| 37 | 37 | |:-|:-:| |
| 38 | -|[CD36](CD36)|2 | |
|
| 39 | -|[GRB2](GRB2)|1 | |
|
| 40 | -|[HNF1B](HNF1B)|2 | |
|
| 41 | -|[KLF2](KLF2)|1 | |
|
| 42 | -|[MYOM2](MYOM2)|2 | |
|
| 43 | -|[NOTCH1](NOTCH1)|1 | |
|
| 44 | -|[TRAF3](TRAF3)|2 | |
|
| 38 | +|[CD36](../CD36)|2 | |
|
| 39 | +|[GRB2](../GRB2)|1 | |
|
| 40 | +|[HNF1B](../HNF1B)|2 | |
|
| 41 | +|[KLF2](../KLF2)|1 | |
|
| 42 | +|[MYOM2](../MYOM2)|2 | |
|
| 43 | +|[NOTCH1](../NOTCH1)|1 | |
|
| 44 | +|[TRAF3](../TRAF3)|2 | |
|
| 45 | 45 | |
| 46 | 46 | # Details |
| 47 | 47 |
papers/pasqualucciHypermutationMultipleProtooncogenes2001a.md
| ... | ... | @@ -35,10 +35,10 @@ All other DLBCL studies, DLBCL Tier 2, 196 |
| 35 | 35 | |
| 36 | 36 | |New gene|DLBCL tier| |
| 37 | 37 | |:-|:-:| |
| 38 | -|[MYC](MYC)|1 | |
|
| 39 | -|[PAX5](PAX5)|2 | |
|
| 40 | -|[PIM1](PIM1)|1 | |
|
| 41 | -|[RHOH](RHOH)|2 | |
|
| 38 | +|[MYC](../MYC)|1 | |
|
| 39 | +|[PAX5](../PAX5)|2 | |
|
| 40 | +|[PIM1](../PIM1)|1 | |
|
| 41 | +|[RHOH](../RHOH)|2 | |
|
| 42 | 42 | |
| 43 | 43 | # Details |
| 44 | 44 |
papers/pasqualucciInactivatingMutationsAcetyltransferase2011a.md
| ... | ... | @@ -36,8 +36,8 @@ All other FL studies, FL Tier 2, 50 |
| 36 | 36 | |
| 37 | 37 | |New gene|DLBCL tier|FL tier| |
| 38 | 38 | |:-|:-:|:-:| |
| 39 | -|[CREBBP](CREBBP)|1 |1 | |
|
| 40 | -|[EP300](EP300)|1 |1 | |
|
| 39 | +|[CREBBP](../CREBBP)|1 |1 | |
|
| 40 | +|[EP300](../EP300)|1 |1 | |
|
| 41 | 41 | |
| 42 | 42 | # Details |
| 43 | 43 |
papers/pasqualucciInactivationPRDM1BLIMP12006a.md
| ... | ... | @@ -35,7 +35,7 @@ All other DLBCL studies, DLBCL Tier 2, 198 |
| 35 | 35 | |
| 36 | 36 | |New gene|DLBCL tier| |
| 37 | 37 | |:-|:-:| |
| 38 | -|[PRDM1](PRDM1)|1 | |
|
| 38 | +|[PRDM1](../PRDM1)|1 | |
|
| 39 | 39 | |
| 40 | 40 | # Details |
| 41 | 41 |
papers/reddyGeneticFunctionalDrivers2017.md
| ... | ... | @@ -35,66 +35,66 @@ All other DLBCL studies, DLBCL Tier 2, 145 |
| 35 | 35 | |
| 36 | 36 | |New gene|DLBCL tier| |
| 37 | 37 | |:-|:-:| |
| 38 | -|[ANKRD17](ANKRD17)|2 | |
|
| 39 | -|[ARID1B](ARID1B)|2 | |
|
| 40 | -|[ARID5B](ARID5B)|2 | |
|
| 41 | -|[ATM](ATM)|1 | |
|
| 42 | -|[ATR](ATR)|2 | |
|
| 43 | -|[BIRC6](BIRC6)|1 | |
|
| 44 | -|[BRINP3](BRINP3)|2 | |
|
| 45 | -|[BTBD3](BTBD3)|2 | |
|
| 46 | -|[CASP8](CASP8)|2 | |
|
| 47 | -|[CBLB](CBLB)|2 | |
|
| 48 | -|[CD22](CD22)|2 | |
|
| 49 | -|[CDC73](CDC73)|2 | |
|
| 50 | -|[CHD1](CHD1)|2 | |
|
| 51 | -|[CHD8](CHD8)|2 | |
|
| 52 | -|[CHST2](CHST2)|2 | |
|
| 53 | -|[DCAF6](DCAF6)|2 | |
|
| 54 | -|[DDX10](DDX10)|2 | |
|
| 55 | -|[DICER1](DICER1)|2 | |
|
| 56 | -|[DNMT3A](DNMT3A)|2 | |
|
| 57 | -|[FOXP1](FOXP1)|2 | |
|
| 58 | -|[FUBP1](FUBP1)|2 | |
|
| 59 | -|[GNAS](GNAS)|2 | |
|
| 60 | -|[GOLGA5](GOLGA5)|2 | |
|
| 61 | -|[HIST1H2BC](HIST1H2BC)|1 | |
|
| 62 | -|[HNRNPU](HNRNPU)|1 | |
|
| 63 | -|[HRAS](HRAS)|2 | |
|
| 64 | -|[IKBKB](IKBKB)|2 | |
|
| 65 | -|[JUNB](JUNB)|2 | |
|
| 66 | -|[KCMF1](KCMF1)|2 | |
|
| 67 | -|[LIN54](LIN54)|2 | |
|
| 68 | -|[MAGT1](MAGT1)|2 | |
|
| 69 | -|[MAP4K4](MAP4K4)|2 | |
|
| 70 | -|[MARK1](MARK1)|2 | |
|
| 71 | -|[MCL1](MCL1)|2 | |
|
| 72 | -|[MECOM](MECOM)|2 | |
|
| 73 | -|[MET](MET)|2 | |
|
| 74 | -|[MSH2](MSH2)|2 | |
|
| 75 | -|[MSH6](MSH6)|2 | |
|
| 76 | -|[MYB](MYB)|2 | |
|
| 77 | -|[NCOR1](NCOR1)|2 | |
|
| 78 | -|[NF1](NF1)|2 | |
|
| 79 | -|[NFKB2](NFKB2)|2 | |
|
| 80 | -|[PHF6](PHF6)|2 | |
|
| 81 | -|[PIK3CD](PIK3CD)|2 | |
|
| 82 | -|[PTPN6](PTPN6)|2 | |
|
| 83 | -|[PTPRK](PTPRK)|2 | |
|
| 84 | -|[RARA](RARA)|2 | |
|
| 85 | -|[RUNX1](RUNX1)|2 | |
|
| 86 | -|[SETD1B](SETD1B)|1 | |
|
| 87 | -|[SETD5](SETD5)|2 | |
|
| 88 | -|[SYK](SYK)|2 | |
|
| 89 | -|[TGFBR2](TGFBR2)|2 | |
|
| 90 | -|[TIPARP](TIPARP)|2 | |
|
| 91 | -|[TOX](TOX)|1 | |
|
| 92 | -|[UBE2A](UBE2A)|1 | |
|
| 93 | -|[WAC](WAC)|2 | |
|
| 94 | -|[YY1](YY1)|2 | |
|
| 95 | -|[ZBTB7A](ZBTB7A)|2 | |
|
| 96 | -|[ZFAT](ZFAT)|2 | |
|
| 97 | -|[ZFX](ZFX)|2 | |
|
| 38 | +|[ANKRD17](../ANKRD17)|2 | |
|
| 39 | +|[ARID1B](../ARID1B)|2 | |
|
| 40 | +|[ARID5B](../ARID5B)|2 | |
|
| 41 | +|[ATM](../ATM)|1 | |
|
| 42 | +|[ATR](../ATR)|2 | |
|
| 43 | +|[BIRC6](../BIRC6)|1 | |
|
| 44 | +|[BRINP3](../BRINP3)|2 | |
|
| 45 | +|[BTBD3](../BTBD3)|2 | |
|
| 46 | +|[CASP8](../CASP8)|2 | |
|
| 47 | +|[CBLB](../CBLB)|2 | |
|
| 48 | +|[CD22](../CD22)|2 | |
|
| 49 | +|[CDC73](../CDC73)|2 | |
|
| 50 | +|[CHD1](../CHD1)|2 | |
|
| 51 | +|[CHD8](../CHD8)|2 | |
|
| 52 | +|[CHST2](../CHST2)|2 | |
|
| 53 | +|[DCAF6](../DCAF6)|2 | |
|
| 54 | +|[DDX10](../DDX10)|2 | |
|
| 55 | +|[DICER1](../DICER1)|2 | |
|
| 56 | +|[DNMT3A](../DNMT3A)|2 | |
|
| 57 | +|[FOXP1](../FOXP1)|2 | |
|
| 58 | +|[FUBP1](../FUBP1)|2 | |
|
| 59 | +|[GNAS](../GNAS)|2 | |
|
| 60 | +|[GOLGA5](../GOLGA5)|2 | |
|
| 61 | +|[HIST1H2BC](../HIST1H2BC)|1 | |
|
| 62 | +|[HNRNPU](../HNRNPU)|1 | |
|
| 63 | +|[HRAS](../HRAS)|2 | |
|
| 64 | +|[IKBKB](../IKBKB)|2 | |
|
| 65 | +|[JUNB](../JUNB)|2 | |
|
| 66 | +|[KCMF1](../KCMF1)|2 | |
|
| 67 | +|[LIN54](../LIN54)|2 | |
|
| 68 | +|[MAGT1](../MAGT1)|2 | |
|
| 69 | +|[MAP4K4](../MAP4K4)|2 | |
|
| 70 | +|[MARK1](../MARK1)|2 | |
|
| 71 | +|[MCL1](../MCL1)|2 | |
|
| 72 | +|[MECOM](../MECOM)|2 | |
|
| 73 | +|[MET](../MET)|2 | |
|
| 74 | +|[MSH2](../MSH2)|2 | |
|
| 75 | +|[MSH6](../MSH6)|2 | |
|
| 76 | +|[MYB](../MYB)|2 | |
|
| 77 | +|[NCOR1](../NCOR1)|2 | |
|
| 78 | +|[NF1](../NF1)|2 | |
|
| 79 | +|[NFKB2](../NFKB2)|2 | |
|
| 80 | +|[PHF6](../PHF6)|2 | |
|
| 81 | +|[PIK3CD](../PIK3CD)|2 | |
|
| 82 | +|[PTPN6](../PTPN6)|2 | |
|
| 83 | +|[PTPRK](../PTPRK)|2 | |
|
| 84 | +|[RARA](../RARA)|2 | |
|
| 85 | +|[RUNX1](../RUNX1)|2 | |
|
| 86 | +|[SETD1B](../SETD1B)|1 | |
|
| 87 | +|[SETD5](../SETD5)|2 | |
|
| 88 | +|[SYK](../SYK)|2 | |
|
| 89 | +|[TGFBR2](../TGFBR2)|2 | |
|
| 90 | +|[TIPARP](../TIPARP)|2 | |
|
| 91 | +|[TOX](../TOX)|1 | |
|
| 92 | +|[UBE2A](../UBE2A)|1 | |
|
| 93 | +|[WAC](../WAC)|2 | |
|
| 94 | +|[YY1](../YY1)|2 | |
|
| 95 | +|[ZBTB7A](../ZBTB7A)|2 | |
|
| 96 | +|[ZFAT](../ZFAT)|2 | |
|
| 97 | +|[ZFX](../ZFX)|2 | |
|
| 98 | 98 | |
| 99 | 99 | # Details |
| 100 | 100 |
papers/reichelFlowSortingExome2015a.md
| ... | ... | @@ -35,35 +35,35 @@ All other PMBL studies, PMBL Tier 2, 64 |
| 35 | 35 | |
| 36 | 36 | |New gene|PMBL tier| |
| 37 | 37 | |:-|:-:| |
| 38 | -|[ARIH2](ARIH2)|2 | |
|
| 39 | -|[B2M](B2M)|1 | |
|
| 40 | -|[BCL7A](BCL7A)|2 | |
|
| 41 | -|[CSF2RB](CSF2RB)|1 | |
|
| 42 | -|[DMD](DMD)|2 | |
|
| 43 | -|[EBF1](EBF1)|1 | |
|
| 44 | -|[EEF1A1](EEF1A1)|1 | |
|
| 45 | -|[EGR1](EGR1)|2 | |
|
| 46 | -|[GNA13](GNA13)|1 | |
|
| 47 | -|[HECW2](HECW2)|2 | |
|
| 48 | -|[HELLS](HELLS)|2 | |
|
| 49 | -|[HIST1H1E](HIST1H1E)|1 | |
|
| 50 | -|[HIST1H3B](HIST1H3B)|2 | |
|
| 51 | -|[HIST1H4C](HIST1H4C)|2 | |
|
| 52 | -|[ITPKB](ITPKB)|1 | |
|
| 53 | -|[MPDZ](MPDZ)|2 | |
|
| 54 | -|[NEK1](NEK1)|2 | |
|
| 55 | -|[PIM2](PIM2)|1 | |
|
| 56 | -|[RANBP2](RANBP2)|2 | |
|
| 57 | -|[SENP7](SENP7)|2 | |
|
| 58 | -|[SETDB1](SETDB1)|2 | |
|
| 59 | -|[SIAH2](SIAH2)|2 | |
|
| 60 | -|[TBC1D15](TBC1D15)|2 | |
|
| 61 | -|[TICRR](TICRR)|2 | |
|
| 62 | -|[TRIP11](TRIP11)|2 | |
|
| 63 | -|[UBE2A](UBE2A)|1 | |
|
| 64 | -|[WEE1](WEE1)|1 | |
|
| 65 | -|[ZFP36L1](ZFP36L1)|1 | |
|
| 66 | -|[ZNF217](ZNF217)|2 | |
|
| 38 | +|[ARIH2](../ARIH2)|2 | |
|
| 39 | +|[B2M](../B2M)|1 | |
|
| 40 | +|[BCL7A](../BCL7A)|2 | |
|
| 41 | +|[CSF2RB](../CSF2RB)|1 | |
|
| 42 | +|[DMD](../DMD)|2 | |
|
| 43 | +|[EBF1](../EBF1)|1 | |
|
| 44 | +|[EEF1A1](../EEF1A1)|1 | |
|
| 45 | +|[EGR1](../EGR1)|2 | |
|
| 46 | +|[GNA13](../GNA13)|1 | |
|
| 47 | +|[HECW2](../HECW2)|2 | |
|
| 48 | +|[HELLS](../HELLS)|2 | |
|
| 49 | +|[HIST1H1E](../HIST1H1E)|1 | |
|
| 50 | +|[HIST1H3B](../HIST1H3B)|2 | |
|
| 51 | +|[HIST1H4C](../HIST1H4C)|2 | |
|
| 52 | +|[ITPKB](../ITPKB)|1 | |
|
| 53 | +|[MPDZ](../MPDZ)|2 | |
|
| 54 | +|[NEK1](../NEK1)|2 | |
|
| 55 | +|[PIM2](../PIM2)|1 | |
|
| 56 | +|[RANBP2](../RANBP2)|2 | |
|
| 57 | +|[SENP7](../SENP7)|2 | |
|
| 58 | +|[SETDB1](../SETDB1)|2 | |
|
| 59 | +|[SIAH2](../SIAH2)|2 | |
|
| 60 | +|[TBC1D15](../TBC1D15)|2 | |
|
| 61 | +|[TICRR](../TICRR)|2 | |
|
| 62 | +|[TRIP11](../TRIP11)|2 | |
|
| 63 | +|[UBE2A](../UBE2A)|1 | |
|
| 64 | +|[WEE1](../WEE1)|1 | |
|
| 65 | +|[ZFP36L1](../ZFP36L1)|1 | |
|
| 66 | +|[ZNF217](../ZNF217)|2 | |
|
| 67 | 67 | |
| 68 | 68 | # Details |
| 69 | 69 |
papers/richterRecurrentMutationID32012a.md
| ... | ... | @@ -35,11 +35,11 @@ All other BL studies, BL Tier 2, 157 |
| 35 | 35 | |
| 36 | 36 | |New gene|BL tier| |
| 37 | 37 | |:-|:-:| |
| 38 | -|[CCND3](CCND3)|1 | |
|
| 39 | -|[FBXO11](FBXO11)|1 | |
|
| 40 | -|[ID3](ID3)|1 | |
|
| 41 | -|[RHOA](RHOA)|1 | |
|
| 42 | -|[SMARCA4](SMARCA4)|1 | |
|
| 38 | +|[CCND3](../CCND3)|1 | |
|
| 39 | +|[FBXO11](../FBXO11)|1 | |
|
| 40 | +|[ID3](../ID3)|1 | |
|
| 41 | +|[RHOA](../RHOA)|1 | |
|
| 42 | +|[SMARCA4](../SMARCA4)|1 | |
|
| 43 | 43 | |
| 44 | 44 | # Details |
| 45 | 45 |
papers/ritzRecurrentMutationsSTAT62009a.md
| ... | ... | @@ -35,7 +35,7 @@ All other PMBL studies, PMBL Tier 2, 82 |
| 35 | 35 | |
| 36 | 36 | |New gene|PMBL tier| |
| 37 | 37 | |:-|:-:| |
| 38 | -|[STAT6](STAT6)|1 | |
|
| 38 | +|[STAT6](../STAT6)|1 | |
|
| 39 | 39 | |
| 40 | 40 | # Details |
| 41 | 41 |
papers/rossiAlterationBIRC3Multiple2011a.md
| ... | ... | @@ -35,11 +35,11 @@ All other MZL studies, MZL Tier 2, 73 |
| 35 | 35 | |
| 36 | 36 | |New gene|MZL tier| |
| 37 | 37 | |:-|:-:| |
| 38 | -|[BIRC3](BIRC3)|1 | |
|
| 39 | -|[IKBKB](IKBKB)|2 | |
|
| 40 | -|[MAP3K14](MAP3K14)|1 | |
|
| 41 | -|[TNFAIP3](TNFAIP3)|1 | |
|
| 42 | -|[TRAF3](TRAF3)|1 | |
|
| 38 | +|[BIRC3](../BIRC3)|1 | |
|
| 39 | +|[IKBKB](../IKBKB)|2 | |
|
| 40 | +|[MAP3K14](../MAP3K14)|1 | |
|
| 41 | +|[TNFAIP3](../TNFAIP3)|1 | |
|
| 42 | +|[TRAF3](../TRAF3)|1 | |
|
| 43 | 43 | |
| 44 | 44 | # Details |
| 45 | 45 |
papers/rossiCodingGenomeSplenic2012c.md
| ... | ... | @@ -8,8 +8,8 @@ bibliography: 'morinlab.bib' |
| 8 | 8 | |
| 9 | 9 | |Entity| Tier 1 genes| Tier 2 genes| |
| 10 | 10 | |:-:|:-:|:-:| |
| 11 | -|MZL|10|11| |
|
| 12 | 11 | |DLBCL|12|2| |
| 12 | +|MZL|10|11| |
|
| 13 | 13 | ```mermaid |
| 14 | 14 | --- |
| 15 | 15 | config: |
| ... | ... | @@ -34,29 +34,29 @@ All other MZL studies, MZL Tier 2, 63 |
| 34 | 34 | |
| 35 | 35 | ## Novel genes reported in this study |
| 36 | 36 | |
| 37 | -|New gene|MZL tier|DLBCL tier| |
|
| 37 | +|New gene|DLBCL tier|MZL tier| |
|
| 38 | 38 | |:-|:-:|:-:| |
| 39 | -|[ARID1A](ARID1A)|1 |1 | |
|
| 40 | -|[CD79A](CD79A)|2 | | |
|
| 41 | -|[DTX1](DTX1)|1 |1 | |
|
| 42 | -|[EGR1](EGR1)|2 | | |
|
| 43 | -|[EGR2](EGR2)|2 | | |
|
| 44 | -|[EP300](EP300)|1 |1 | |
|
| 45 | -|[GPS2](GPS2)|2 | | |
|
| 46 | -|[HIST1H2AG](HIST1H2AG)|2 |2 | |
|
| 47 | -|[HIST1H2BK](HIST1H2BK)|2 |1 | |
|
| 48 | -|[KMT2D](KMT2D)|1 |1 | |
|
| 49 | -|[MCRS1](MCRS1)|2 | | |
|
| 50 | -|[MSL2](MSL2)|2 | | |
|
| 51 | -|[NOTCH1](NOTCH1)|1 |1 | |
|
| 52 | -|[NOTCH2](NOTCH2)|1 |1 | |
|
| 53 | -|[SIN3A](SIN3A)|1 |1 | |
|
| 54 | -|[SPEN](SPEN)|1 |1 | |
|
| 55 | -|[SWAP70](SWAP70)|2 | | |
|
| 56 | -|[TBL1XR1](TBL1XR1)|1 |1 | |
|
| 57 | -|[TP53](TP53)|1 |1 | |
|
| 58 | -|[TRRAP](TRRAP)|2 |1 | |
|
| 59 | -|[WAC](WAC)|2 |2 | |
|
| 39 | +|[ARID1A](../ARID1A)|1 |1 | |
|
| 40 | +|[CD79A](../CD79A)| |2 | |
|
| 41 | +|[DTX1](../DTX1)|1 |1 | |
|
| 42 | +|[EGR1](../EGR1)| |2 | |
|
| 43 | +|[EGR2](../EGR2)| |2 | |
|
| 44 | +|[EP300](../EP300)|1 |1 | |
|
| 45 | +|[GPS2](../GPS2)| |2 | |
|
| 46 | +|[HIST1H2AG](../HIST1H2AG)|2 |2 | |
|
| 47 | +|[HIST1H2BK](../HIST1H2BK)|1 |2 | |
|
| 48 | +|[KMT2D](../KMT2D)|1 |1 | |
|
| 49 | +|[MCRS1](../MCRS1)| |2 | |
|
| 50 | +|[MSL2](../MSL2)| |2 | |
|
| 51 | +|[NOTCH1](../NOTCH1)|1 |1 | |
|
| 52 | +|[NOTCH2](../NOTCH2)|1 |1 | |
|
| 53 | +|[SIN3A](../SIN3A)|1 |1 | |
|
| 54 | +|[SPEN](../SPEN)|1 |1 | |
|
| 55 | +|[SWAP70](../SWAP70)| |2 | |
|
| 56 | +|[TBL1XR1](../TBL1XR1)|1 |1 | |
|
| 57 | +|[TP53](../TP53)|1 |1 | |
|
| 58 | +|[TRRAP](../TRRAP)|1 |2 | |
|
| 59 | +|[WAC](../WAC)|2 |2 | |
|
| 60 | 60 | |
| 61 | 61 | # Details |
| 62 | 62 |
papers/rushtonGeneticEvolutionaryPatterns2020.md
| ... | ... | @@ -35,7 +35,7 @@ All other DLBCL studies, DLBCL Tier 2, 198 |
| 35 | 35 | |
| 36 | 36 | |New gene|DLBCL tier| |
| 37 | 37 | |:-|:-:| |
| 38 | -|[MS4A1](MS4A1)|1 | |
|
| 38 | +|[MS4A1](../MS4A1)|1 | |
|
| 39 | 39 | |
| 40 | 40 | # Details |
| 41 | 41 |
papers/russler-germainMutationsAssociatedProgression2023b.md
| ... | ... | @@ -35,26 +35,26 @@ All other FL studies, FL Tier 2, 31 |
| 35 | 35 | |
| 36 | 36 | |New gene|FL tier| |
| 37 | 37 | |:-|:-:| |
| 38 | -|[ABL2](ABL2)|2 | |
|
| 39 | -|[BCL10](BCL10)|2 | |
|
| 40 | -|[CD70](CD70)|2 | |
|
| 41 | -|[CD83](CD83)|1 | |
|
| 42 | -|[CILP](CILP)|2 | |
|
| 43 | -|[CYP2A6](CYP2A6)|2 | |
|
| 44 | -|[GBP7](GBP7)|2 | |
|
| 45 | -|[GRM6](GRM6)|2 | |
|
| 46 | -|[IGLL5](IGLL5)|2 | |
|
| 47 | -|[KIR3DL1](KIR3DL1)|2 | |
|
| 48 | -|[MAGEC1](MAGEC1)|2 | |
|
| 49 | -|[MAP7D1](MAP7D1)|2 | |
|
| 50 | -|[MKI67](MKI67)|2 | |
|
| 51 | -|[NFKBIA](NFKBIA)|2 | |
|
| 52 | -|[OR8H2](OR8H2)|2 | |
|
| 53 | -|[PZP](PZP)|2 | |
|
| 54 | -|[SHROOM3](SHROOM3)|2 | |
|
| 55 | -|[SRRM2](SRRM2)|2 | |
|
| 56 | -|[STAB2](STAB2)|2 | |
|
| 57 | -|[XIRP2](XIRP2)|2 | |
|
| 38 | +|[ABL2](../ABL2)|2 | |
|
| 39 | +|[BCL10](../BCL10)|2 | |
|
| 40 | +|[CD70](../CD70)|2 | |
|
| 41 | +|[CD83](../CD83)|1 | |
|
| 42 | +|[CILP](../CILP)|2 | |
|
| 43 | +|[CYP2A6](../CYP2A6)|2 | |
|
| 44 | +|[GBP7](../GBP7)|2 | |
|
| 45 | +|[GRM6](../GRM6)|2 | |
|
| 46 | +|[IGLL5](../IGLL5)|2 | |
|
| 47 | +|[KIR3DL1](../KIR3DL1)|2 | |
|
| 48 | +|[MAGEC1](../MAGEC1)|2 | |
|
| 49 | +|[MAP7D1](../MAP7D1)|2 | |
|
| 50 | +|[MKI67](../MKI67)|2 | |
|
| 51 | +|[NFKBIA](../NFKBIA)|2 | |
|
| 52 | +|[OR8H2](../OR8H2)|2 | |
|
| 53 | +|[PZP](../PZP)|2 | |
|
| 54 | +|[SHROOM3](../SHROOM3)|2 | |
|
| 55 | +|[SRRM2](../SRRM2)|2 | |
|
| 56 | +|[STAB2](../STAB2)|2 | |
|
| 57 | +|[XIRP2](../XIRP2)|2 | |
|
| 58 | 58 | |
| 59 | 59 | # Details |
| 60 | 60 |
papers/sarkozyMutationalLandscapeGray2021a.md
| ... | ... | @@ -35,17 +35,17 @@ All other PMBL studies, PMBL Tier 2, 76 |
| 35 | 35 | |
| 36 | 36 | |New gene|PMBL tier| |
| 37 | 37 | |:-|:-:| |
| 38 | -|[ABCA13](ABCA13)|2 | |
|
| 39 | -|[BCL2](BCL2)|2 | |
|
| 40 | -|[BIRC6](BIRC6)|1 | |
|
| 41 | -|[BTG1](BTG1)|1 | |
|
| 42 | -|[HIST1H1B](HIST1H1B)|1 | |
|
| 43 | -|[KMT2C](KMT2C)|1 | |
|
| 44 | -|[LRRN3](LRRN3)|2 | |
|
| 45 | -|[MFHAS1](MFHAS1)|2 | |
|
| 46 | -|[NCOR2](NCOR2)|2 | |
|
| 47 | -|[RELN](RELN)|2 | |
|
| 48 | -|[SPEN](SPEN)|1 | |
|
| 38 | +|[ABCA13](../ABCA13)|2 | |
|
| 39 | +|[BCL2](../BCL2)|2 | |
|
| 40 | +|[BIRC6](../BIRC6)|1 | |
|
| 41 | +|[BTG1](../BTG1)|1 | |
|
| 42 | +|[HIST1H1B](../HIST1H1B)|1 | |
|
| 43 | +|[KMT2C](../KMT2C)|1 | |
|
| 44 | +|[LRRN3](../LRRN3)|2 | |
|
| 45 | +|[MFHAS1](../MFHAS1)|2 | |
|
| 46 | +|[NCOR2](../NCOR2)|2 | |
|
| 47 | +|[RELN](../RELN)|2 | |
|
| 48 | +|[SPEN](../SPEN)|1 | |
|
| 49 | 49 | |
| 50 | 50 | # Details |
| 51 | 51 |
papers/schmitzBurkittLymphomaPathogenesis2012.md
| ... | ... | @@ -36,26 +36,26 @@ All other BL studies, BL Tier 2, 141 |
| 36 | 36 | |
| 37 | 37 | |New gene|BL tier|DLBCL tier| |
| 38 | 38 | |:-|:-:|:-:| |
| 39 | -|[C16orf48](C16orf48)|2 | | |
|
| 40 | -|[DDX3X](DDX3X)|1 |1 | |
|
| 41 | -|[DHCR7](DHCR7)|2 | | |
|
| 42 | -|[ELP2](ELP2)|2 | | |
|
| 43 | -|[EXOSC6](EXOSC6)|2 | | |
|
| 44 | -|[FLYWCH1](FLYWCH1)|2 | | |
|
| 45 | -|[FOXO1](FOXO1)|1 |1 | |
|
| 46 | -|[GTSE1](GTSE1)|2 | | |
|
| 47 | -|[ID3](ID3)|1 |2 | |
|
| 48 | -|[KANK2](KANK2)|2 | | |
|
| 49 | -|[MKI67](MKI67)|2 | | |
|
| 50 | -|[MYO18A](MYO18A)|2 | | |
|
| 51 | -|[NCOR2](NCOR2)|2 |2 | |
|
| 52 | -|[PCBP1](PCBP1)|2 |2 | |
|
| 53 | -|[PDCD11](PDCD11)|2 | | |
|
| 54 | -|[TCF3](TCF3)|1 | | |
|
| 55 | -|[TOP2A](TOP2A)|2 | | |
|
| 56 | -|[WDR90](WDR90)|2 | | |
|
| 57 | -|[WHAMM](WHAMM)|2 | | |
|
| 58 | -|[YY1AP1](YY1AP1)|2 | | |
|
| 39 | +|[C16orf48](../C16orf48)|2 | | |
|
| 40 | +|[DDX3X](../DDX3X)|1 |1 | |
|
| 41 | +|[DHCR7](../DHCR7)|2 | | |
|
| 42 | +|[ELP2](../ELP2)|2 | | |
|
| 43 | +|[EXOSC6](../EXOSC6)|2 | | |
|
| 44 | +|[FLYWCH1](../FLYWCH1)|2 | | |
|
| 45 | +|[FOXO1](../FOXO1)|1 |1 | |
|
| 46 | +|[GTSE1](../GTSE1)|2 | | |
|
| 47 | +|[ID3](../ID3)|1 |2 | |
|
| 48 | +|[KANK2](../KANK2)|2 | | |
|
| 49 | +|[MKI67](../MKI67)|2 | | |
|
| 50 | +|[MYO18A](../MYO18A)|2 | | |
|
| 51 | +|[NCOR2](../NCOR2)|2 |2 | |
|
| 52 | +|[PCBP1](../PCBP1)|2 |2 | |
|
| 53 | +|[PDCD11](../PDCD11)|2 | | |
|
| 54 | +|[TCF3](../TCF3)|1 | | |
|
| 55 | +|[TOP2A](../TOP2A)|2 | | |
|
| 56 | +|[WDR90](../WDR90)|2 | | |
|
| 57 | +|[WHAMM](../WHAMM)|2 | | |
|
| 58 | +|[YY1AP1](../YY1AP1)|2 | | |
|
| 59 | 59 | |
| 60 | 60 | # Details |
| 61 | 61 |
papers/schmitzGeneticsPathogenesisDiffuse2018a.md
| ... | ... | @@ -35,22 +35,22 @@ All other DLBCL studies, DLBCL Tier 2, 189 |
| 35 | 35 | |
| 36 | 36 | |New gene|DLBCL tier| |
| 37 | 37 | |:-|:-:| |
| 38 | -|[CXCR5](CXCR5)|1 | |
|
| 39 | -|[DDX3X](DDX3X)|1 | |
|
| 40 | -|[DTX1](DTX1)|1 | |
|
| 41 | -|[FOXC1](FOXC1)|2 | |
|
| 42 | -|[GPC5](GPC5)|2 | |
|
| 43 | -|[GSG2](GSG2)|2 | |
|
| 44 | -|[HIST2H2BE](HIST2H2BE)|1 | |
|
| 45 | -|[ITPKB](ITPKB)|1 | |
|
| 46 | -|[KLHL21](KLHL21)|2 | |
|
| 47 | -|[LAMA5](LAMA5)|2 | |
|
| 48 | -|[MYBPC2](MYBPC2)|2 | |
|
| 49 | -|[NOL9](NOL9)|1 | |
|
| 50 | -|[PAPOLG](PAPOLG)|2 | |
|
| 51 | -|[PRKDC](PRKDC)|2 | |
|
| 52 | -|[TAP1](TAP1)|2 | |
|
| 53 | -|[WEE1](WEE1)|1 | |
|
| 38 | +|[CXCR5](../CXCR5)|1 | |
|
| 39 | +|[DDX3X](../DDX3X)|1 | |
|
| 40 | +|[DTX1](../DTX1)|1 | |
|
| 41 | +|[FOXC1](../FOXC1)|2 | |
|
| 42 | +|[GPC5](../GPC5)|2 | |
|
| 43 | +|[GSG2](../GSG2)|2 | |
|
| 44 | +|[HIST2H2BE](../HIST2H2BE)|1 | |
|
| 45 | +|[ITPKB](../ITPKB)|1 | |
|
| 46 | +|[KLHL21](../KLHL21)|2 | |
|
| 47 | +|[LAMA5](../LAMA5)|2 | |
|
| 48 | +|[MYBPC2](../MYBPC2)|2 | |
|
| 49 | +|[NOL9](../NOL9)|1 | |
|
| 50 | +|[PAPOLG](../PAPOLG)|2 | |
|
| 51 | +|[PRKDC](../PRKDC)|2 | |
|
| 52 | +|[TAP1](../TAP1)|2 | |
|
| 53 | +|[WEE1](../WEE1)|1 | |
|
| 54 | 54 | |
| 55 | 55 | # Details |
| 56 | 56 |
papers/schmitzTNFAIP3A20Tumor2009a.md
| ... | ... | @@ -35,7 +35,7 @@ All other PMBL studies, PMBL Tier 2, 82 |
| 35 | 35 | |
| 36 | 36 | |New gene|PMBL tier| |
| 37 | 37 | |:-|:-:| |
| 38 | -|[TNFAIP3](TNFAIP3)|1 | |
|
| 38 | +|[TNFAIP3](../TNFAIP3)|1 | |
|
| 39 | 39 | |
| 40 | 40 | # Details |
| 41 | 41 |
papers/schneiderAlterationsCD58Gene2015a.md
| ... | ... | @@ -35,7 +35,7 @@ All other PMBL studies, PMBL Tier 2, 82 |
| 35 | 35 | |
| 36 | 36 | |New gene|PMBL tier| |
| 37 | 37 | |:-|:-:| |
| 38 | -|[CD58](CD58)|1 | |
|
| 38 | +|[CD58](../CD58)|1 | |
|
| 39 | 39 | |
| 40 | 40 | # Details |
| 41 | 41 |
papers/schollMutationsRegionFAS2007.md
| ... | ... | @@ -35,7 +35,7 @@ All other DLBCL studies, DLBCL Tier 2, 198 |
| 35 | 35 | |
| 36 | 36 | |New gene|DLBCL tier| |
| 37 | 37 | |:-|:-:| |
| 38 | -|[FAS](FAS)|1 | |
|
| 38 | +|[FAS](../FAS)|1 | |
|
| 39 | 39 | |
| 40 | 40 | # Details |
| 41 | 41 |
papers/shinBRAFV600EMAP2K12015.md
| ... | ... | @@ -35,7 +35,7 @@ All other DLBCL studies, DLBCL Tier 2, 197 |
| 35 | 35 | |
| 36 | 36 | |New gene|DLBCL tier| |
| 37 | 37 | |:-|:-:| |
| 38 | -|[MAP2K1](MAP2K1)|2 | |
|
| 38 | +|[MAP2K1](../MAP2K1)|2 | |
|
| 39 | 39 | |
| 40 | 40 | # Details |
| 41 | 41 |
papers/spinaGeneticsNodalMarginal2016b.md
| ... | ... | @@ -35,37 +35,37 @@ All other MZL studies, MZL Tier 2, 51 |
| 35 | 35 | |
| 36 | 36 | |New gene|MZL tier| |
| 37 | 37 | |:-|:-:| |
| 38 | -|[ABCA13](ABCA13)|2 | |
|
| 39 | -|[ACTG1](ACTG1)|2 | |
|
| 40 | -|[ADD2](ADD2)|2 | |
|
| 41 | -|[AMN](AMN)|2 | |
|
| 42 | -|[AOC2](AOC2)|2 | |
|
| 43 | -|[BCL10](BCL10)|1 | |
|
| 44 | -|[C6orf103](C6orf103)|2 | |
|
| 45 | -|[CDC42BPB](CDC42BPB)|2 | |
|
| 46 | -|[CDKN2A](CDKN2A)|2 | |
|
| 47 | -|[CLGN](CLGN)|2 | |
|
| 48 | -|[CNKSR2](CNKSR2)|2 | |
|
| 49 | -|[FAS](FAS)|1 | |
|
| 50 | -|[FAT1](FAT1)|1 | |
|
| 51 | -|[GPR98](GPR98)|2 | |
|
| 52 | -|[ID3](ID3)|1 | |
|
| 53 | -|[LRP1B](LRP1B)|2 | |
|
| 54 | -|[NCOR2](NCOR2)|1 | |
|
| 55 | -|[NOL9](NOL9)|1 | |
|
| 56 | -|[PACRG](PACRG)|2 | |
|
| 57 | -|[PARK2](PARK2)|2 | |
|
| 58 | -|[PLXNB3](PLXNB3)|2 | |
|
| 59 | -|[PTPRD](PTPRD)|1 | |
|
| 60 | -|[RCOR1](RCOR1)|2 | |
|
| 61 | -|[RPL1L](RPL1L)|2 | |
|
| 62 | -|[SAMD5](SAMD5)|2 | |
|
| 63 | -|[SCG3](SCG3)|2 | |
|
| 64 | -|[STXBP5](STXBP5)|2 | |
|
| 65 | -|[TAF1](TAF1)|2 | |
|
| 66 | -|[TCTN2](TCTN2)|2 | |
|
| 67 | -|[TNFRSF14](TNFRSF14)|1 | |
|
| 68 | -|[ZNF9](ZNF9)|2 | |
|
| 38 | +|[ABCA13](../ABCA13)|2 | |
|
| 39 | +|[ACTG1](../ACTG1)|2 | |
|
| 40 | +|[ADD2](../ADD2)|2 | |
|
| 41 | +|[AMN](../AMN)|2 | |
|
| 42 | +|[AOC2](../AOC2)|2 | |
|
| 43 | +|[BCL10](../BCL10)|1 | |
|
| 44 | +|[C6orf103](../C6orf103)|2 | |
|
| 45 | +|[CDC42BPB](../CDC42BPB)|2 | |
|
| 46 | +|[CDKN2A](../CDKN2A)|2 | |
|
| 47 | +|[CLGN](../CLGN)|2 | |
|
| 48 | +|[CNKSR2](../CNKSR2)|2 | |
|
| 49 | +|[FAS](../FAS)|1 | |
|
| 50 | +|[FAT1](../FAT1)|1 | |
|
| 51 | +|[GPR98](../GPR98)|2 | |
|
| 52 | +|[ID3](../ID3)|1 | |
|
| 53 | +|[LRP1B](../LRP1B)|2 | |
|
| 54 | +|[NCOR2](../NCOR2)|1 | |
|
| 55 | +|[NOL9](../NOL9)|1 | |
|
| 56 | +|[PACRG](../PACRG)|2 | |
|
| 57 | +|[PARK2](../PARK2)|2 | |
|
| 58 | +|[PLXNB3](../PLXNB3)|2 | |
|
| 59 | +|[PTPRD](../PTPRD)|1 | |
|
| 60 | +|[RCOR1](../RCOR1)|2 | |
|
| 61 | +|[RPL1L](../RPL1L)|2 | |
|
| 62 | +|[SAMD5](../SAMD5)|2 | |
|
| 63 | +|[SCG3](../SCG3)|2 | |
|
| 64 | +|[STXBP5](../STXBP5)|2 | |
|
| 65 | +|[TAF1](../TAF1)|2 | |
|
| 66 | +|[TCTN2](../TCTN2)|2 | |
|
| 67 | +|[TNFRSF14](../TNFRSF14)|1 | |
|
| 68 | +|[ZNF9](../ZNF9)|2 | |
|
| 69 | 69 | |
| 70 | 70 | # Details |
| 71 | 71 |
papers/tanakaFrequentIncidenceSomatic1992.md
| ... | ... | @@ -35,7 +35,7 @@ All other DLBCL studies, DLBCL Tier 2, 198 |
| 35 | 35 | |
| 36 | 36 | |New gene|DLBCL tier| |
| 37 | 37 | |:-|:-:| |
| 38 | -|[BCL2](BCL2)|1 | |
|
| 38 | +|[BCL2](../BCL2)|1 | |
|
| 39 | 39 | |
| 40 | 40 | # Details |
| 41 | 41 |
papers/thomasGeneticSubgroupsInform2023.md
| ... | ... | @@ -35,11 +35,11 @@ All other BL studies, BL Tier 2, 154 |
| 35 | 35 | |
| 36 | 36 | |New gene|BL tier| |
| 37 | 37 | |:-|:-:| |
| 38 | -|[CDKN2C](CDKN2C)|2 | |
|
| 39 | -|[EBF1](EBF1)|2 | |
|
| 40 | -|[EHD1](EHD1)|2 | |
|
| 41 | -|[PHF6](PHF6)|1 | |
|
| 42 | -|[WNK1](WNK1)|1 | |
|
| 38 | +|[CDKN2C](../CDKN2C)|2 | |
|
| 39 | +|[EBF1](../EBF1)|2 | |
|
| 40 | +|[EHD1](../EHD1)|2 | |
|
| 41 | +|[PHF6](../PHF6)|1 | |
|
| 42 | +|[WNK1](../WNK1)|1 | |
|
| 43 | 43 | |
| 44 | 44 | # Details |
| 45 | 45 |
papers/tiacciBRAFMutationsHairycell2011a.md
| ... | ... | @@ -35,7 +35,7 @@ All other DLBCL studies, DLBCL Tier 2, 198 |
| 35 | 35 | |
| 36 | 36 | |New gene|DLBCL tier| |
| 37 | 37 | |:-|:-:| |
| 38 | -|[BRAF](BRAF)|1 | |
|
| 38 | +|[BRAF](../BRAF)|1 | |
|
| 39 | 39 | |
| 40 | 40 | # Details |
| 41 | 41 |
papers/tiacciPervasiveMutationsJAKSTAT2018b.md
| ... | ... | @@ -35,16 +35,16 @@ All other PMBL studies, PMBL Tier 2, 73 |
| 35 | 35 | |
| 36 | 36 | |New gene|PMBL tier| |
| 37 | 37 | |:-|:-:| |
| 38 | -|[AKAP6](AKAP6)|2 | |
|
| 39 | -|[DGKB](DGKB)|2 | |
|
| 40 | -|[ITPR3](ITPR3)|2 | |
|
| 41 | -|[NUP214](NUP214)|2 | |
|
| 42 | -|[PRUNE2](PRUNE2)|2 | |
|
| 43 | -|[SETD5](SETD5)|2 | |
|
| 44 | -|[STAT5B](STAT5B)|2 | |
|
| 45 | -|[TNIP1](TNIP1)|2 | |
|
| 46 | -|[TP53](TP53)|1 | |
|
| 47 | -|[ZCCHC11](ZCCHC11)|2 | |
|
| 38 | +|[AKAP6](../AKAP6)|2 | |
|
| 39 | +|[DGKB](../DGKB)|2 | |
|
| 40 | +|[ITPR3](../ITPR3)|2 | |
|
| 41 | +|[NUP214](../NUP214)|2 | |
|
| 42 | +|[PRUNE2](../PRUNE2)|2 | |
|
| 43 | +|[SETD5](../SETD5)|2 | |
|
| 44 | +|[STAT5B](../STAT5B)|2 | |
|
| 45 | +|[TNIP1](../TNIP1)|2 | |
|
| 46 | +|[TP53](../TP53)|1 | |
|
| 47 | +|[ZCCHC11](../ZCCHC11)|2 | |
|
| 48 | 48 | |
| 49 | 49 | # Details |
| 50 | 50 |
papers/troenNOTCH2MutationsMarginal2008.md
| ... | ... | @@ -35,7 +35,7 @@ All other DLBCL studies, DLBCL Tier 2, 198 |
| 35 | 35 | |
| 36 | 36 | |New gene|DLBCL tier| |
| 37 | 37 | |:-|:-:| |
| 38 | -|[NOTCH2](NOTCH2)|1 | |
|
| 38 | +|[NOTCH2](../NOTCH2)|1 | |
|
| 39 | 39 | |
| 40 | 40 | # Details |
| 41 | 41 |
papers/vandenbrandRecurrentMutationsGenes2017.md
| ... | ... | @@ -35,8 +35,8 @@ All other MZL studies, MZL Tier 2, 72 |
| 35 | 35 | |
| 36 | 36 | |New gene|MZL tier| |
| 37 | 37 | |:-|:-:| |
| 38 | -|[CD9B](CD9B)|2 | |
|
| 39 | -|[TNIP2](TNIP2)|2 | |
|
| 38 | +|[CD9B](../CD9B)|2 | |
|
| 39 | +|[TNIP2](../TNIP2)|2 | |
|
| 40 | 40 | |
| 41 | 41 | # Details |
| 42 | 42 |
papers/viganoSomaticIL4RMutations2018b.md
| ... | ... | @@ -35,7 +35,7 @@ All other PMBL studies, PMBL Tier 2, 82 |
| 35 | 35 | |
| 36 | 36 | |New gene|PMBL tier| |
| 37 | 37 | |:-|:-:| |
| 38 | -|[IL4R](IL4R)|1 | |
|
| 38 | +|[IL4R](../IL4R)|1 | |
|
| 39 | 39 | |
| 40 | 40 | # Details |
| 41 | 41 |
papers/wenigerMutationsTumorSuppressor2006a.md
| ... | ... | @@ -35,8 +35,8 @@ All other PMBL studies, PMBL Tier 2, 81 |
| 35 | 35 | |
| 36 | 36 | |New gene|PMBL tier| |
| 37 | 37 | |:-|:-:| |
| 38 | -|[GPR126](GPR126)|2 | |
|
| 39 | -|[SOCS1](SOCS1)|1 | |
|
| 38 | +|[GPR126](../GPR126)|2 | |
|
| 39 | +|[SOCS1](../SOCS1)|1 | |
|
| 40 | 40 | |
| 41 | 41 | # Details |
| 42 | 42 |
papers/wienandGenomicAnalysesFlowsorted2019b.md
| ... | ... | @@ -35,13 +35,13 @@ All other PMBL studies, PMBL Tier 2, 79 |
| 35 | 35 | |
| 36 | 36 | |New gene|PMBL tier| |
| 37 | 37 | |:-|:-:| |
| 38 | -|[ACTB](ACTB)|1 | |
|
| 39 | -|[ARID1A](ARID1A)|1 | |
|
| 40 | -|[DNAH12](DNAH12)|2 | |
|
| 41 | -|[HLA-B](HLA-B)|1 | |
|
| 42 | -|[IKBKB](IKBKB)|2 | |
|
| 43 | -|[NFKBIA](NFKBIA)|1 | |
|
| 44 | -|[RBM38](RBM38)|2 | |
|
| 38 | +|[ACTB](../ACTB)|1 | |
|
| 39 | +|[ARID1A](../ARID1A)|1 | |
|
| 40 | +|[DNAH12](../DNAH12)|2 | |
|
| 41 | +|[HLA-B](../HLA-B)|1 | |
|
| 42 | +|[IKBKB](../IKBKB)|2 | |
|
| 43 | +|[NFKBIA](../NFKBIA)|1 | |
|
| 44 | +|[RBM38](../RBM38)|2 | |
|
| 45 | 45 | |
| 46 | 46 | # Details |
| 47 | 47 |
papers/wildaInactivationARFMDM2p53Pathway2004.md
| ... | ... | @@ -35,7 +35,7 @@ All other BL studies, BL Tier 2, 157 |
| 35 | 35 | |
| 36 | 36 | |New gene|BL tier| |
| 37 | 37 | |:-|:-:| |
| 38 | -|[TP53](TP53)|1 | |
|
| 38 | +|[TP53](../TP53)|1 | |
|
| 39 | 39 | |
| 40 | 40 | # Details |
| 41 | 41 |
papers/wuGeneticHeterogeneityPrimary2016.md
| ... | ... | @@ -35,7 +35,7 @@ All other MCL studies, MCL Tier 2, 46 |
| 35 | 35 | |
| 36 | 36 | |New gene|MCL tier| |
| 37 | 37 | |:-|:-:| |
| 38 | -|[CARD11](CARD11)|1 | |
|
| 38 | +|[CARD11](../CARD11)|1 | |
|
| 39 | 39 | |
| 40 | 40 | # Details |
| 41 | 41 |
papers/yanBCRTLRSignaling2012a.md
| ... | ... | @@ -35,8 +35,8 @@ All other MZL studies, MZL Tier 2, 74 |
| 35 | 35 | |
| 36 | 36 | |New gene|MZL tier| |
| 37 | 37 | |:-|:-:| |
| 38 | -|[CARD11](CARD11)|1 | |
|
| 39 | -|[MYD88](MYD88)|1 | |
|
| 38 | +|[CARD11](../CARD11)|1 | |
|
| 39 | +|[MYD88](../MYD88)|1 | |
|
| 40 | 40 | |
| 41 | 41 | # Details |
| 42 | 42 |
papers/yildizActivatingSTAT6Mutations2015c.md
| ... | ... | @@ -36,7 +36,7 @@ All other DLBCL studies, DLBCL Tier 2, 198 |
| 36 | 36 | |
| 37 | 37 | |New gene|DLBCL tier|FL tier| |
| 38 | 38 | |:-|:-:|:-:| |
| 39 | -|[STAT6](STAT6)|1 |1 | |
|
| 39 | +|[STAT6](../STAT6)|1 |1 | |
|
| 40 | 40 | |
| 41 | 41 | # Details |
| 42 | 42 |
papers/zhangGeneticHeterogeneityDiffuse2013.md
| ... | ... | @@ -35,25 +35,25 @@ All other DLBCL studies, DLBCL Tier 2, 190 |
| 35 | 35 | |
| 36 | 36 | |New gene|DLBCL tier| |
| 37 | 37 | |:-|:-:| |
| 38 | -|[ARID1A](ARID1A)|1 | |
|
| 39 | -|[FBXW7](FBXW7)|1 | |
|
| 40 | -|[HIST1H3B](HIST1H3B)|1 | |
|
| 41 | -|[INO80](INO80)|2 | |
|
| 42 | -|[JAK1](JAK1)|2 | |
|
| 43 | -|[JAK3](JAK3)|2 | |
|
| 44 | -|[KLHL14](KLHL14)|1 | |
|
| 45 | -|[KMT2C](KMT2C)|1 | |
|
| 46 | -|[MGA](MGA)|1 | |
|
| 47 | -|[MTOR](MTOR)|1 | |
|
| 48 | -|[PIK3R1](PIK3R1)|2 | |
|
| 49 | -|[POU2F2](POU2F2)|1 | |
|
| 50 | -|[SETD2](SETD2)|2 | |
|
| 51 | -|[SMARCA4](SMARCA4)|1 | |
|
| 52 | -|[STAT5B](STAT5B)|2 | |
|
| 53 | -|[UBR5](UBR5)|2 | |
|
| 54 | -|[ZEB2](ZEB2)|2 | |
|
| 55 | -|[ZNF292](ZNF292)|1 | |
|
| 56 | -|[ZNF608](ZNF608)|1 | |
|
| 38 | +|[ARID1A](../ARID1A)|1 | |
|
| 39 | +|[FBXW7](../FBXW7)|1 | |
|
| 40 | +|[HIST1H3B](../HIST1H3B)|1 | |
|
| 41 | +|[INO80](../INO80)|2 | |
|
| 42 | +|[JAK1](../JAK1)|2 | |
|
| 43 | +|[JAK3](../JAK3)|2 | |
|
| 44 | +|[KLHL14](../KLHL14)|1 | |
|
| 45 | +|[KMT2C](../KMT2C)|1 | |
|
| 46 | +|[MGA](../MGA)|1 | |
|
| 47 | +|[MTOR](../MTOR)|1 | |
|
| 48 | +|[PIK3R1](../PIK3R1)|2 | |
|
| 49 | +|[POU2F2](../POU2F2)|1 | |
|
| 50 | +|[SETD2](../SETD2)|2 | |
|
| 51 | +|[SMARCA4](../SMARCA4)|1 | |
|
| 52 | +|[STAT5B](../STAT5B)|2 | |
|
| 53 | +|[UBR5](../UBR5)|2 | |
|
| 54 | +|[ZEB2](../ZEB2)|2 | |
|
| 55 | +|[ZNF292](../ZNF292)|1 | |
|
| 56 | +|[ZNF608](../ZNF608)|1 | |
|
| 57 | 57 | |
| 58 | 58 | # Details |
| 59 | 59 |
papers/zhangGenomicLandscapeMantle2014.md
| ... | ... | @@ -35,34 +35,34 @@ All other MCL studies, MCL Tier 2, 20 |
| 35 | 35 | |
| 36 | 36 | |New gene|MCL tier| |
| 37 | 37 | |:-|:-:| |
| 38 | -|[ANK2](ANK2)|2 | |
|
| 39 | -|[ATP11C](ATP11C)|2 | |
|
| 40 | -|[CDH8](CDH8)|2 | |
|
| 41 | -|[COL11A1](COL11A1)|2 | |
|
| 42 | -|[COL16A1](COL16A1)|2 | |
|
| 43 | -|[CTNNA2](CTNNA2)|2 | |
|
| 44 | -|[DHDH](DHDH)|2 | |
|
| 45 | -|[DLC1](DLC1)|2 | |
|
| 46 | -|[EIF2AK4](EIF2AK4)|2 | |
|
| 47 | -|[ESX1](ESX1)|2 | |
|
| 48 | -|[FAT4](FAT4)|2 | |
|
| 49 | -|[GRIN2A](GRIN2A)|2 | |
|
| 50 | -|[HEPH](HEPH)|2 | |
|
| 51 | -|[KMT2C](KMT2C)|2 | |
|
| 52 | -|[MRGPRF](MRGPRF)|2 | |
|
| 53 | -|[NIN](NIN)|2 | |
|
| 54 | -|[OGDHL](OGDHL)|2 | |
|
| 55 | -|[PCDHB2](PCDHB2)|2 | |
|
| 56 | -|[PLXNB3](PLXNB3)|2 | |
|
| 57 | -|[POT1](POT1)|1 | |
|
| 58 | -|[RB1](RB1)|1 | |
|
| 59 | -|[ROBO2](ROBO2)|2 | |
|
| 60 | -|[SALL3](SALL3)|2 | |
|
| 61 | -|[SI](SI)|2 | |
|
| 62 | -|[SMC1A](SMC1A)|2 | |
|
| 63 | -|[TBC1D26](TBC1D26)|2 | |
|
| 64 | -|[ZNF117](ZNF117)|2 | |
|
| 65 | -|[ZNF296](ZNF296)|2 | |
|
| 38 | +|[ANK2](../ANK2)|2 | |
|
| 39 | +|[ATP11C](../ATP11C)|2 | |
|
| 40 | +|[CDH8](../CDH8)|2 | |
|
| 41 | +|[COL11A1](../COL11A1)|2 | |
|
| 42 | +|[COL16A1](../COL16A1)|2 | |
|
| 43 | +|[CTNNA2](../CTNNA2)|2 | |
|
| 44 | +|[DHDH](../DHDH)|2 | |
|
| 45 | +|[DLC1](../DLC1)|2 | |
|
| 46 | +|[EIF2AK4](../EIF2AK4)|2 | |
|
| 47 | +|[ESX1](../ESX1)|2 | |
|
| 48 | +|[FAT4](../FAT4)|2 | |
|
| 49 | +|[GRIN2A](../GRIN2A)|2 | |
|
| 50 | +|[HEPH](../HEPH)|2 | |
|
| 51 | +|[KMT2C](../KMT2C)|2 | |
|
| 52 | +|[MRGPRF](../MRGPRF)|2 | |
|
| 53 | +|[NIN](../NIN)|2 | |
|
| 54 | +|[OGDHL](../OGDHL)|2 | |
|
| 55 | +|[PCDHB2](../PCDHB2)|2 | |
|
| 56 | +|[PLXNB3](../PLXNB3)|2 | |
|
| 57 | +|[POT1](../POT1)|1 | |
|
| 58 | +|[RB1](../RB1)|1 | |
|
| 59 | +|[ROBO2](../ROBO2)|2 | |
|
| 60 | +|[SALL3](../SALL3)|2 | |
|
| 61 | +|[SI](../SI)|2 | |
|
| 62 | +|[SMC1A](../SMC1A)|2 | |
|
| 63 | +|[TBC1D26](../TBC1D26)|2 | |
|
| 64 | +|[ZNF117](../ZNF117)|2 | |
|
| 65 | +|[ZNF296](../ZNF296)|2 | |
|
| 66 | 66 | |
| 67 | 67 | # Details |
| 68 | 68 |
papers/zhouSporadicEndemicBurkitt2019.md
| ... | ... | @@ -35,7 +35,7 @@ All other BL studies, BL Tier 2, 156 |
| 35 | 35 | |
| 36 | 36 | |New gene|BL tier| |
| 37 | 37 | |:-|:-:| |
| 38 | -|[KMT2C](KMT2C)|2 | |
|
| 38 | +|[KMT2C](../KMT2C)|2 | |
|
| 39 | 39 | |
| 40 | 40 | # Details |
| 41 | 41 |