41db08029d4cb1e8cdbdf275308543ced60f5f77
DLBCL_genes.md
| ... | ... | @@ -15,87 +15,87 @@ link-citations: true |
| 15 | 15 | |
| 16 | 16 | |Gene|Summary| First DLBCL study | Other entities | QC result | |
| 17 | 17 | |:-:|:--:|:-:|:-|:-| |
| 18 | -|[ACTB](ACTB)|Tier 1 GE[@lohrDiscoveryPrioritizationSomatic2012], aSHM|[Lohr et al](papers/lohrDiscoveryPrioritizationSomatic2012)|[@drevalGeneticSubdivisionsFollicular2023; @wienandGenomicAnalysesFlowsorted2019b]|| |
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| 18 | +|[ACTB](ACTB)|Tier 1 GE[@lohrDiscoveryPrioritizationSomatic2012], aSHM|[Lohr et al](papers/lohrDiscoveryPrioritizationSomatic2012)|[@drevalGeneticSubdivisionsFollicular2023; @wienandGenomicAnalysesFlowsorted2019]|| |
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| 19 | 19 | |[ACTG1](ACTG1)|Tier 1 GE[@fanComprehensiveCharacterizationDriver2020], aSHM|[Fan et al](papers/fanComprehensiveCharacterizationDriver2020)|[@deschGenotypingCirculatingTumor2020; @hubschmannMutationalMechanismsShaping2021; @spinaGeneticsNodalMarginal2016b]|| |
| 20 | -|[ARID1A](ARID1A)|Tier 1 GE[@zhangGeneticHeterogeneityDiffuse2013], FE[@barisicARID1AOrchestratesSWI2024]|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)|[@krysiakRecurrentSomaticMutations2017; @loveGeneticLandscapeMutations2012; @rossiCodingGenomeSplenic2012c; @wienandGenomicAnalysesFlowsorted2019b]|| |
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| 20 | +|[ARID1A](ARID1A)|Tier 1 GE[@zhangGeneticHeterogeneityDiffuse2013], FE[@barisicARID1AOrchestratesSWI2024]|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)|[@krysiakRecurrentSomaticMutations2017; @loveGeneticLandscapeMutations2012; @rossiCodingGenomeSplenic2012c; @wienandGenomicAnalysesFlowsorted2019]|| |
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| 21 | 21 | |[ATM](ATM)|Tier 1 GE[@reddyGeneticFunctionalDrivers2017], FE[@camachoATMGeneInactivation2002]|[Reddy et al](papers/reddyGeneticFunctionalDrivers2017)|[@beaLandscapeSomaticMutations2013; @braggioGenomicAnalysisMarginal2012]|| |
| 22 | -|[B2M](B2M)|Tier 1 GE[@morinFrequentMutationHistonemodifying2011], FE[@challa-malladiCombinedGeneticInactivation2011]|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)|[@pararajalingamCodingNoncodingDrivers2020; @reichelFlowSortingExome2015a]|| |
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| 22 | +|[B2M](B2M)|Tier 1 GE[@morinFrequentMutationHistonemodifying2011], FE[@challa-malladiCombinedGeneticInactivation2011]|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)|[@pararajalingamCodingNoncodingDrivers2020; @reichelFlowSortingExome2015]|| |
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| 23 | 23 | |[BCL10](BCL10)|Tier 1 GE[@morinFrequentMutationHistonemodifying2011], FE[@xiaBCL10MutationsDefine2022]|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)|[@russler-germainMutationsAssociatedProgression2023; @spinaGeneticsNodalMarginal2016b]|| |
| 24 | -|[BCL2](BCL2)|Tier 1 GE[@tanakaFrequentIncidenceSomatic1992], aSHM|[Tanaka et al](papers/tanakaFrequentIncidenceSomatic1992)|[@burkhardtClinicalRelevanceMolecular2022; @morinFrequentMutationHistonemodifying2011; @sarkozyMutationalLandscapeGray2021a]|| |
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| 24 | +|[BCL2](BCL2)|Tier 1 GE[@tanakaFrequentIncidenceSomatic1992], aSHM|[Tanaka et al](papers/tanakaFrequentIncidenceSomatic1992)|[@burkhardtClinicalRelevanceMolecular2022; @morinFrequentMutationHistonemodifying2011; @sarkozyMutationalLandscapeGray2021]|| |
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| 25 | 25 | |[BCL6](BCL6)|Tier 1 GE[@morinFrequentMutationHistonemodifying2011], FE[@masclePointMutationsBCL62003], aSHM|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)|[@drevalGeneticSubdivisionsFollicular2023; @loveGeneticLandscapeMutations2012]|| |
| 26 | -|[BCL7A](BCL7A)|Tier 1 GE[@morinFrequentMutationHistonemodifying2011], FE[@balinas-gaviraFrequentMutationsAminoterminal2020], aSHM|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)|[@grandeGenomewideDiscoverySomatic2019; @krysiakRecurrentSomaticMutations2017b; @reichelFlowSortingExome2015a]|| |
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| 27 | -|[BIRC6](BIRC6)|Tier 1 GE[@reddyGeneticFunctionalDrivers2017]|[Reddy et al](papers/reddyGeneticFunctionalDrivers2017)|[@sarkozyMutationalLandscapeGray2021a]|| |
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| 26 | +|[BCL7A](BCL7A)|Tier 1 GE[@morinFrequentMutationHistonemodifying2011], FE[@balinas-gaviraFrequentMutationsAminoterminal2020], aSHM|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)|[@grandeGenomewideDiscoverySomatic2019; @krysiakRecurrentSomaticMutations2017b; @reichelFlowSortingExome2015]|| |
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| 27 | +|[BIRC6](BIRC6)|Tier 1 GE[@reddyGeneticFunctionalDrivers2017]|[Reddy et al](papers/reddyGeneticFunctionalDrivers2017)|[@sarkozyMutationalLandscapeGray2021]|| |
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| 28 | 28 | |[BRAF](BRAF)|Tier 1 GE[@tiacciBRAFMutationsHairycell2011], FE[@wanMechanismActivationRAFERK2004]|[Tiacci et al](papers/tiacciBRAFMutationsHairycell2011)|[@loveGeneticLandscapeMutations2012]|| |
| 29 | -|[BTG1](BTG1)|Tier 1 GE[@morinFrequentMutationHistonemodifying2011], FE[@almasmoumFrequentLossBTG12021], aSHM|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)|[@burkhardtClinicalRelevanceMolecular2022; @drevalGeneticSubdivisionsFollicular2023; @sarkozyMutationalLandscapeGray2021a]|| |
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| 29 | +|[BTG1](BTG1)|Tier 1 GE[@morinFrequentMutationHistonemodifying2011], FE[@almasmoumFrequentLossBTG12021], aSHM|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)|[@burkhardtClinicalRelevanceMolecular2022; @drevalGeneticSubdivisionsFollicular2023; @sarkozyMutationalLandscapeGray2021]|| |
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| 30 | 30 | |[BTG2](BTG2)|Tier 1 GE[@morinFrequentMutationHistonemodifying2011], aSHM|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)|[@drevalGeneticSubdivisionsFollicular2023; @loveGeneticLandscapeMutations2012]|| |
| 31 | 31 | |[BTK](BTK)|Tier 1 GE[@albuquerqueEnhancingKnowledgeDiscovery2017], FE[@huFollicularLymphomaassociatedBTK2021]|[Albuquerque et al](papers/albuquerqueEnhancingKnowledgeDiscovery2017)|[@krysiakRecurrentSomaticMutations2017b]|| |
| 32 | 32 | |[CARD11](CARD11)|Tier 1 GE[@lenzOncogenicCARD11Mutations2008], FE[@lenzOncogenicCARD11Mutations2008]|[Lenz et al](papers/lenzOncogenicCARD11Mutations2008)|[@morinFrequentMutationHistonemodifying2011; @wuGeneticHeterogeneityPrimary2016; @yanBCRTLRSignaling2012a]|| |
| 33 | 33 | |[CCND3](CCND3)|Tier 1 GE[@morinFrequentMutationHistonemodifying2011], FE[@schmitzBurkittLymphomaPathogenesis2012]|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)|[@deschGenotypingCirculatingTumor2020; @jalladesExomeSequencingIdentifies2017; @richterRecurrentMutationID32012]|| |
| 34 | -|[CD58](CD58)|Tier 1 GE[@morinFrequentMutationHistonemodifying2011], FE[@challa-malladiCombinedGeneticInactivation2011]|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)|[@schneiderAlterationsCD58Gene2015a]|| |
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| 34 | +|[CD58](CD58)|Tier 1 GE[@morinFrequentMutationHistonemodifying2011], FE[@challa-malladiCombinedGeneticInactivation2011]|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)|[@schneiderAlterationsCD58Gene2015]|| |
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| 35 | 35 | |[CD70](CD70)|Tier 1 GE[@morinFrequentMutationHistonemodifying2011], FE[@nieDualRoleCD702022]|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)|[@russler-germainMutationsAssociatedProgression2023]|| |
| 36 | 36 | |[CD79B](CD79B)|Tier 1 GE[@davisChronicActiveBcellreceptor2010], FE[@davisChronicActiveBcellreceptor2010]|[Davis et al](papers/davisChronicActiveBcellreceptor2010)|[@drevalGeneticSubdivisionsFollicular2023; @paneaWholeGenomeLandscape2019]|| |
| 37 | -|[CD83](CD83)|Tier 1 GE[@morinMutationalStructuralAnalysis2013], aSHM|[Morin et al](papers/morinMutationalStructuralAnalysis2013)|[@dunsCharacterizationDLBCLPMBL2021b; @paneaWholeGenomeLandscape2019; @russler-germainMutationsAssociatedProgression2023]|| |
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| 37 | +|[CD83](CD83)|Tier 1 GE[@morinMutationalStructuralAnalysis2013], aSHM|[Morin et al](papers/morinMutationalStructuralAnalysis2013)|[@dunsCharacterizationDLBCLPMBL2021; @paneaWholeGenomeLandscape2019; @russler-germainMutationsAssociatedProgression2023]|| |
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| 38 | 38 | |[CDKN2A](CDKN2A)|Tier 1 GE[@morinMutationalStructuralAnalysis2013], FE[@kannengiesserFunctionalStructuralGenetic2009]|[Morin et al](papers/morinMutationalStructuralAnalysis2013)|[@grandeGenomewideDiscoverySomatic2019; @spinaGeneticsNodalMarginal2016b]|| |
| 39 | -|[CIITA](CIITA)|Tier 1 GE[@morinFrequentMutationHistonemodifying2011], FE[@mottokGenomicAlterationsCIITA2015], aSHM|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)|[@mottokGenomicAlterationsCIITA2015b]|| |
|
| 40 | -|[CREBBP](CREBBP)|Tier 1 GE[@pasqualucciInactivatingMutationsAcetyltransferase2011], FE[@pasqualucciInactivatingMutationsAcetyltransferase2011]|[Pasqualucci et al](papers/pasqualucciInactivatingMutationsAcetyltransferase2011)|[@dunsCharacterizationDLBCLPMBL2021b; @loveGeneticLandscapeMutations2012; @parryWholeExomeSequencing2013]|| |
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| 39 | +|[CIITA](CIITA)|Tier 1 GE[@morinFrequentMutationHistonemodifying2011], FE[@mottokGenomicAlterationsCIITA2015], aSHM|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)|[@mottokGenomicAlterationsCIITA2015]|| |
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| 40 | +|[CREBBP](CREBBP)|Tier 1 GE[@pasqualucciInactivatingMutationsAcetyltransferase2011], FE[@pasqualucciInactivatingMutationsAcetyltransferase2011]|[Pasqualucci et al](papers/pasqualucciInactivatingMutationsAcetyltransferase2011)|[@dunsCharacterizationDLBCLPMBL2021; @loveGeneticLandscapeMutations2012; @parryWholeExomeSequencing2013]|| |
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| 41 | 41 | |[CXCR4](CXCR4)|Tier 1 GE[@khodabakhshiRecurrentTargetsAberrant2012], FE[@zmajkovicovaGenotypephenotypeCorrelationsWHIM2022], aSHM|[Khodabakhshi et al](papers/khodabakhshiRecurrentTargetsAberrant2012)|[@krysiakRecurrentSomaticMutations2017b; @paneaWholeGenomeLandscape2019]|| |
| 42 | -|[DDX3X](DDX3X)|Tier 1 GE[@reddyGeneticFunctionalDrivers2017], FE[@gongSequentialInverseDysregulation2021]|[Reddy et al](papers/reddyGeneticFunctionalDrivers2017)|[@mottokIntegrativeGenomicAnalysis2019b; @schmitzBurkittLymphomaPathogenesis2012]|| |
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| 42 | +|[DDX3X](DDX3X)|Tier 1 GE[@reddyGeneticFunctionalDrivers2017], FE[@gongSequentialInverseDysregulation2021]|[Reddy et al](papers/reddyGeneticFunctionalDrivers2017)|[@mottokIntegrativeGenomicAnalysis2019; @schmitzBurkittLymphomaPathogenesis2012]|| |
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| 43 | 43 | |[DTX1](DTX1)|Tier 1 GE[@zhangGeneticHeterogeneityDiffuse2013], aSHM|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)|[@gomezUltraDeepSequencingReveals2023; @loveGeneticLandscapeMutations2012; @rossiCodingGenomeSplenic2012c]|| |
| 44 | -|[DUSP2](DUSP2)|Tier 1 GE[@lohrDiscoveryPrioritizationSomatic2012], aSHM|[Lohr et al](papers/lohrDiscoveryPrioritizationSomatic2012)|[@drevalGeneticSubdivisionsFollicular2023; @dunsCharacterizationDLBCLPMBL2021b]|| |
|
| 45 | -|[EBF1](EBF1)|Tier 1 GE[@bohleRoleEarlyBcell2013], FE[@ramirez-komoSpontaneousLossLineage2017], aSHM|[Bohle et al](papers/bohleRoleEarlyBcell2013)|[@drevalGeneticSubdivisionsFollicular2023; @reichelFlowSortingExome2015a; @thomasGeneticSubgroupsInform2023]|| |
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| 46 | -|[EEF1A1](EEF1A1)|Tier 1 GE[@chapuyMolecularSubtypesDiffuse2018]|[Chapuy et al](papers/chapuyMolecularSubtypesDiffuse2018)|[@hubschmannMutationalMechanismsShaping2021; @reichelFlowSortingExome2015a]|| |
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| 44 | +|[DUSP2](DUSP2)|Tier 1 GE[@lohrDiscoveryPrioritizationSomatic2012], aSHM|[Lohr et al](papers/lohrDiscoveryPrioritizationSomatic2012)|[@drevalGeneticSubdivisionsFollicular2023; @dunsCharacterizationDLBCLPMBL2021]|| |
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| 45 | +|[EBF1](EBF1)|Tier 1 GE[@bohleRoleEarlyBcell2013], FE[@ramirez-komoSpontaneousLossLineage2017], aSHM|[Bohle et al](papers/bohleRoleEarlyBcell2013)|[@drevalGeneticSubdivisionsFollicular2023; @reichelFlowSortingExome2015; @thomasGeneticSubgroupsInform2023]|| |
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| 46 | +|[EEF1A1](EEF1A1)|Tier 1 GE[@chapuyMolecularSubtypesDiffuse2018]|[Chapuy et al](papers/chapuyMolecularSubtypesDiffuse2018)|[@hubschmannMutationalMechanismsShaping2021; @reichelFlowSortingExome2015]|| |
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| 47 | 47 | |[EP300](EP300)|Tier 1 GE[@pasqualucciInactivatingMutationsAcetyltransferase2011], FE[@pasqualucciInactivatingMutationsAcetyltransferase2011]|[Pasqualucci et al](papers/pasqualucciInactivatingMutationsAcetyltransferase2011)|[@rossiCodingGenomeSplenic2012c]|| |
| 48 | 48 | |[ETS1](ETS1)|Tier 1 GE[@morinFrequentMutationHistonemodifying2011], aSHM|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)|[@paneaWholeGenomeLandscape2019]|| |
| 49 | 49 | |[ETV6](ETV6)|Tier 1 GE[@lohrDiscoveryPrioritizationSomatic2012], FE[@wangETV6MutationCohort2014], aSHM|[Lohr et al](papers/lohrDiscoveryPrioritizationSomatic2012)||| |
| 50 | -|[EZH2](EZH2)|Tier 1 GE[@morinSomaticMutationsAltering2010], FE[@sneeringerCoordinatedActivitiesWildtype2010]|[Morin et al](papers/morinSomaticMutationsAltering2010)|[@loveGeneticLandscapeMutations2012; @mottokIntegrativeGenomicAnalysis2019b]|| |
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| 50 | +|[EZH2](EZH2)|Tier 1 GE[@morinSomaticMutationsAltering2010], FE[@sneeringerCoordinatedActivitiesWildtype2010]|[Morin et al](papers/morinSomaticMutationsAltering2010)|[@loveGeneticLandscapeMutations2012; @mottokIntegrativeGenomicAnalysis2019]|| |
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| 51 | 51 | |[FAS](FAS)|Tier 1 GE[@schollMutationsRegionFAS2007], FE[@wangFasFADDDeathDomain2010]|[Scholl et al](papers/schollMutationsRegionFAS2007)|[@morinFrequentMutationHistonemodifying2011; @spinaGeneticsNodalMarginal2016b]|| |
| 52 | 52 | |[FBXO11](FBXO11)|Tier 1 GE[@arthurGenomewideDiscoverySomatic2018], FE[@duanFBXO11TargetsBCL62011]|[Arthur et al](papers/arthurGenomewideDiscoverySomatic2018)|[@parryWholeExomeSequencing2013; @richterRecurrentMutationID32012]|| |
| 53 | 53 | |[FBXW7](FBXW7)|Tier 1 GE[@zhangGeneticHeterogeneityDiffuse2013], FE[@saffieFBXW7TriggersDegradation2020]|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)||| |
| 54 | -|[FOXO1](FOXO1)|Tier 1 GE[@morinFrequentMutationHistonemodifying2011], FE[@trinhAnalysisFOXO1Mutations]|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)|[@dunsCharacterizationDLBCLPMBL2021b; @schmitzBurkittLymphomaPathogenesis2012]|| |
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| 55 | -|[GNA13](GNA13)|Tier 1 GE[@morinFrequentMutationHistonemodifying2011], FE[@muppidiLossSignalingGa132014]|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)|[@loveGeneticLandscapeMutations2012; @reichelFlowSortingExome2015a]|| |
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| 54 | +|[FOXO1](FOXO1)|Tier 1 GE[@morinFrequentMutationHistonemodifying2011], FE[@trinhAnalysisFOXO1Mutations]|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)|[@dunsCharacterizationDLBCLPMBL2021; @schmitzBurkittLymphomaPathogenesis2012]|| |
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| 55 | +|[GNA13](GNA13)|Tier 1 GE[@morinFrequentMutationHistonemodifying2011], FE[@muppidiLossSignalingGa132014]|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)|[@loveGeneticLandscapeMutations2012; @reichelFlowSortingExome2015]|| |
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| 56 | 56 | |[GNAI2](GNAI2)|Tier 1 GE[@morinMutationalStructuralAnalysis2013], FE[@muppidiLossSignalingGa132014]|[Morin et al](papers/morinMutationalStructuralAnalysis2013)|[@drevalGeneticSubdivisionsFollicular2023; @grandeGenomewideDiscoverySomatic2019]|| |
| 57 | 57 | |[GRB2](GRB2)|Tier 1 GE[@pasqualucciAnalysisCodingGenome2011]|[Pasqualucci et al](papers/pasqualucciAnalysisCodingGenome2011)||| |
| 58 | 58 | |[GRHPR](GRHPR)|Tier 1 GE[@schmitzGeneticsPathogenesisDiffuse2018], aSHM|[Schmitz et al](papers/schmitzGeneticsPathogenesisDiffuse2018)||| |
| 59 | -|[HIST1H1B](HIST1H1B)|Tier 1 GE[@chapuyMolecularSubtypesDiffuse2018], aSHM|[Chapuy et al](papers/chapuyMolecularSubtypesDiffuse2018)|[@krysiakRecurrentSomaticMutations2017; @sarkozyMutationalLandscapeGray2021a]|| |
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| 59 | +|[HIST1H1B](HIST1H1B)|Tier 1 GE[@chapuyMolecularSubtypesDiffuse2018], aSHM|[Chapuy et al](papers/chapuyMolecularSubtypesDiffuse2018)|[@krysiakRecurrentSomaticMutations2017; @sarkozyMutationalLandscapeGray2021]|| |
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| 60 | 60 | |[HIST1H1C](HIST1H1C)|Tier 1 GE[@morinFrequentMutationHistonemodifying2011], aSHM|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)|[@paneaWholeGenomeLandscape2019]|| |
| 61 | 61 | |[HIST1H1D](HIST1H1D)|Tier 1 GE[@morinMutationalStructuralAnalysis2013], aSHM|[Morin et al](papers/morinMutationalStructuralAnalysis2013)|[@jalladesExomeSequencingIdentifies2017; @krysiakRecurrentSomaticMutations2017]|| |
| 62 | -|[HIST1H1E](HIST1H1E)|Tier 1 GE[@lohrDiscoveryPrioritizationSomatic2012], aSHM|[Lohr et al](papers/lohrDiscoveryPrioritizationSomatic2012)|[@grandeGenomewideDiscoverySomatic2019; @krysiakRecurrentSomaticMutations2017; @reichelFlowSortingExome2015a]|| |
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| 62 | +|[HIST1H1E](HIST1H1E)|Tier 1 GE[@lohrDiscoveryPrioritizationSomatic2012], aSHM|[Lohr et al](papers/lohrDiscoveryPrioritizationSomatic2012)|[@grandeGenomewideDiscoverySomatic2019; @krysiakRecurrentSomaticMutations2017; @reichelFlowSortingExome2015]|| |
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| 63 | 63 | |[HIST1H2AC](HIST1H2AC)|Tier 1 GE[@morinMutationalStructuralAnalysis2013], aSHM|[Morin et al](papers/morinMutationalStructuralAnalysis2013)|[@krysiakRecurrentSomaticMutations2017]|| |
| 64 | 64 | |[HIST1H2AM](HIST1H2AM)|Tier 1 GE[@chapuyMolecularSubtypesDiffuse2018], aSHM|[Chapuy et al](papers/chapuyMolecularSubtypesDiffuse2018)|[@krysiakRecurrentSomaticMutations2017; @paneaWholeGenomeLandscape2019]|| |
| 65 | -|[HIST1H2BC](HIST1H2BC)|Tier 1 GE[@lohrDiscoveryPrioritizationSomatic2012], aSHM|[Lohr et al](papers/lohrDiscoveryPrioritizationSomatic2012)|[@krysiakRecurrentSomaticMutations2017; @mottokIntegrativeGenomicAnalysis2019b]|| |
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| 65 | +|[HIST1H2BC](HIST1H2BC)|Tier 1 GE[@lohrDiscoveryPrioritizationSomatic2012], aSHM|[Lohr et al](papers/lohrDiscoveryPrioritizationSomatic2012)|[@krysiakRecurrentSomaticMutations2017; @mottokIntegrativeGenomicAnalysis2019]|| |
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| 66 | 66 | |[HIST1H2BK](HIST1H2BK)|Tier 1 GE[@zhangGeneticHeterogeneityDiffuse2013], aSHM|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)|[@paneaWholeGenomeLandscape2019; @rossiCodingGenomeSplenic2012c]|| |
| 67 | -|[HIST1H3B](HIST1H3B)|Tier 1 GE[@lohrDiscoveryPrioritizationSomatic2012], aSHM|[Lohr et al](papers/lohrDiscoveryPrioritizationSomatic2012)|[@reichelFlowSortingExome2015a]|| |
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| 67 | +|[HIST1H3B](HIST1H3B)|Tier 1 GE[@lohrDiscoveryPrioritizationSomatic2012], aSHM|[Lohr et al](papers/lohrDiscoveryPrioritizationSomatic2012)|[@reichelFlowSortingExome2015]|| |
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| 68 | 68 | |[HIST2H2BE](HIST2H2BE)|Tier 1 GE[@chapuyMolecularSubtypesDiffuse2018], aSHM|[Chapuy et al](papers/chapuyMolecularSubtypesDiffuse2018)||| |
| 69 | 69 | |[HLA-A](HLA-A)|Tier 1 GE[@lohrDiscoveryPrioritizationSomatic2012], FE[@fangazioGeneticMechanismsHLAI2021]|[Lohr et al](papers/lohrDiscoveryPrioritizationSomatic2012)|[@deschGenotypingCirculatingTumor2020]|| |
| 70 | -|[HLA-B](HLA-B)|Tier 1 GE[@lohrDiscoveryPrioritizationSomatic2012], FE[@fangazioGeneticMechanismsHLAI2021]|[Lohr et al](papers/lohrDiscoveryPrioritizationSomatic2012)|[@wienandGenomicAnalysesFlowsorted2019b]|| |
|
| 70 | +|[HLA-B](HLA-B)|Tier 1 GE[@lohrDiscoveryPrioritizationSomatic2012], FE[@fangazioGeneticMechanismsHLAI2021]|[Lohr et al](papers/lohrDiscoveryPrioritizationSomatic2012)|[@wienandGenomicAnalysesFlowsorted2019]|| |
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| 71 | 71 | |[HLA-C](HLA-C)|Tier 1 GE[@chapuyMolecularSubtypesDiffuse2018], FE[@fangazioGeneticMechanismsHLAI2021]|[Chapuy et al](papers/chapuyMolecularSubtypesDiffuse2018)|[@gomezUltraDeepSequencingReveals2023]|| |
| 72 | 72 | |[HLA-DMB](HLA-DMB)|Tier 1 GE[@hubschmannMutationalMechanismsShaping2021]|[Hubschmann et al](papers/hubschmannMutationalMechanismsShaping2021)||| |
| 73 | 73 | |[HNRNPU](HNRNPU)|Tier 1 GE[@reddyGeneticFunctionalDrivers2017]|[Reddy et al](papers/reddyGeneticFunctionalDrivers2017)|[@paneaWholeGenomeLandscape2019]|| |
| 74 | 74 | |[HVCN1](HVCN1)|Tier 1 GE[@chapuyMolecularSubtypesDiffuse2018]|[Chapuy et al](papers/chapuyMolecularSubtypesDiffuse2018)|[@krysiakRecurrentSomaticMutations2017]|| |
| 75 | 75 | |[IKZF3](IKZF3)|Tier 1 GE[@morinFrequentMutationHistonemodifying2011], FE[@lazarianHotspotMutationTranscription2021]|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)|[@paneaWholeGenomeLandscape2019]|| |
| 76 | -|[IL4R](IL4R)|Tier 1 GE[@dunsCharacterizationDLBCLPMBL2021], FE[@viganoSomaticIL4RMutations2018], aSHM|[Duns et al](papers/dunsCharacterizationDLBCLPMBL2021)|[@viganoSomaticIL4RMutations2018b]|| |
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| 77 | -|[IRF4](IRF4)|Tier 1 GE[@morinFrequentMutationHistonemodifying2011], aSHM|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)|[@drevalGeneticSubdivisionsFollicular2023; @mottokIntegrativeGenomicAnalysis2019b]|| |
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| 78 | -|[IRF8](IRF8)|Tier 1 GE[@morinFrequentMutationHistonemodifying2011], FE[@qiuIRF8mutantCellLymphoma2024], aSHM|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)|[@mottokIntegrativeGenomicAnalysis2019b; @paneaWholeGenomeLandscape2019]|| |
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| 79 | -|[ITPKB](ITPKB)|Tier 1 GE[@schmitzGeneticsPathogenesisDiffuse2018], FE[@tiacciPervasiveMutationsJAKSTAT2018], aSHM|[Schmitz et al](papers/schmitzGeneticsPathogenesisDiffuse2018)|[@drevalGeneticSubdivisionsFollicular2023; @reichelFlowSortingExome2015a]|| |
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| 80 | -|[JUNB](JUNB)|Tier 1 GE[@lohrDiscoveryPrioritizationSomatic2012]|[Lohr et al](papers/lohrDiscoveryPrioritizationSomatic2012)|[@mottokIntegrativeGenomicAnalysis2019b]|PASS| |
|
| 76 | +|[IL4R](IL4R)|Tier 1 GE[@dunsCharacterizationDLBCLPMBL2021], FE[@viganoSomaticIL4RMutations2018], aSHM|[Duns et al](papers/dunsCharacterizationDLBCLPMBL2021)|[@viganoSomaticIL4RMutations2018]|| |
|
| 77 | +|[IRF4](IRF4)|Tier 1 GE[@morinFrequentMutationHistonemodifying2011], aSHM|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)|[@drevalGeneticSubdivisionsFollicular2023; @mottokIntegrativeGenomicAnalysis2019]|| |
|
| 78 | +|[IRF8](IRF8)|Tier 1 GE[@morinFrequentMutationHistonemodifying2011], FE[@qiuIRF8mutantCellLymphoma2024], aSHM|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)|[@mottokIntegrativeGenomicAnalysis2019; @paneaWholeGenomeLandscape2019]|| |
|
| 79 | +|[ITPKB](ITPKB)|Tier 1 GE[@schmitzGeneticsPathogenesisDiffuse2018], FE[@tiacciPervasiveMutationsJAKSTAT2018], aSHM|[Schmitz et al](papers/schmitzGeneticsPathogenesisDiffuse2018)|[@drevalGeneticSubdivisionsFollicular2023; @reichelFlowSortingExome2015]|| |
|
| 80 | +|[JUNB](JUNB)|Tier 1 GE[@lohrDiscoveryPrioritizationSomatic2012]|[Lohr et al](papers/lohrDiscoveryPrioritizationSomatic2012)|[@mottokIntegrativeGenomicAnalysis2019]|PASS| |
|
| 81 | 81 | |[KLF2](KLF2)|Tier 1 GE[@pasqualucciAnalysisCodingGenome2011], aSHM|[Pasqualucci et al](papers/pasqualucciAnalysisCodingGenome2011)|[@deschGenotypingCirculatingTumor2020; @drevalGeneticSubdivisionsFollicular2023; @jalladesExomeSequencingIdentifies2017]|| |
| 82 | 82 | |[KLHL14](KLHL14)|Tier 1 GE[@zhangGeneticHeterogeneityDiffuse2013], FE[@choiRegulationCellReceptordependent2020]|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)||| |
| 83 | 83 | |[KLHL6](KLHL6)|Tier 1 GE[@morinFrequentMutationHistonemodifying2011], FE[@choiLossKLHL6Promotes2018], aSHM|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)|[@ganapathiGeneticLandscapeDural2016]|| |
| 84 | -|[KMT2C](KMT2C)|Tier 1 GE[@zhangGeneticHeterogeneityDiffuse2013]|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)|[@sarkozyMutationalLandscapeGray2021a; @zhangGenomicLandscapeMantle2014; @zhouSporadicEndemicBurkitt2019]|| |
|
| 84 | +|[KMT2C](KMT2C)|Tier 1 GE[@zhangGeneticHeterogeneityDiffuse2013]|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)|[@sarkozyMutationalLandscapeGray2021; @zhangGenomicLandscapeMantle2014; @zhouSporadicEndemicBurkitt2019]|| |
|
| 85 | 85 | |[KMT2D](KMT2D)|Tier 1 GE[@morinFrequentMutationHistonemodifying2011], FE[@zhangDisruptionKMT2DPerturbs2015]|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)|[@beaLandscapeSomaticMutations2013; @deschGenotypingCirculatingTumor2020; @grandeGenomewideDiscoverySomatic2019; @rossiCodingGenomeSplenic2012c]|| |
| 86 | 86 | |[KRAS](KRAS)|Tier 1 GE[@lohrDiscoveryPrioritizationSomatic2012], FE[@scheffzekRasRasGAPComplexStructural1997]|[Lohr et al](papers/lohrDiscoveryPrioritizationSomatic2012)||| |
| 87 | -|[LRRN3](LRRN3)|Tier 1 GE[@zhangGeneticHeterogeneityDiffuse2013]|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)|[@sarkozyMutationalLandscapeGray2021a]|| |
|
| 87 | +|[LRRN3](LRRN3)|Tier 1 GE[@zhangGeneticHeterogeneityDiffuse2013]|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)|[@sarkozyMutationalLandscapeGray2021]|| |
|
| 88 | 88 | |[LTB](LTB)|Tier 1 GE[@chapuyMolecularSubtypesDiffuse2018], aSHM|[Chapuy et al](papers/chapuyMolecularSubtypesDiffuse2018)|[@deschGenotypingCirculatingTumor2020; @drevalGeneticSubdivisionsFollicular2023]|| |
| 89 | 89 | |[MEF2B](MEF2B)|Tier 1 GE[@morinFrequentMutationHistonemodifying2011], FE[@ponMEF2BMutationsNonHodgkin2015], aSHM|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)|[@beaLandscapeSomaticMutations2013]|| |
| 90 | 90 | |[MEF2C](MEF2C)|Tier 1 GE[@hubschmannMutationalMechanismsShaping2021], aSHM|[Hubschmann et al](papers/hubschmannMutationalMechanismsShaping2021)||| |
| 91 | 91 | |[MGA](MGA)|Tier 1 GE[@reddyGeneticFunctionalDrivers2017], FE[@depaoliMGASuppressorMYC2013]|[Reddy et al](papers/reddyGeneticFunctionalDrivers2017)|[@jalladesExomeSequencingIdentifies2017]|| |
| 92 | 92 | |[MIR142](MIR142)|Tier 1 GE[@kwanhianMicroRNA142Mutated202012], FE[@trissalMIR142LossofFunctionMutations2018], aSHM|[Kwanhian et al](papers/kwanhianMicroRNA142Mutated202012)|[@grandeGenomewideDiscoverySomatic2019]|| |
| 93 | 93 | |[MPEG1](MPEG1)|Tier 1 GE[@morinMutationalStructuralAnalysis2013]|[Morin et al](papers/morinMutationalStructuralAnalysis2013)||| |
| 94 | -|[MS4A1](MS4A1)|Tier 1 GE[@rushtonGeneticEvolutionaryPatterns2020], FE[@rushtonGeneticEvolutionaryPatterns2020], aSHM|[Rushton et al](papers/rushtonGeneticEvolutionaryPatterns2020)|[@mottokIntegrativeGenomicAnalysis2019b]|| |
|
| 94 | +|[MS4A1](MS4A1)|Tier 1 GE[@rushtonGeneticEvolutionaryPatterns2020], FE[@rushtonGeneticEvolutionaryPatterns2020], aSHM|[Rushton et al](papers/rushtonGeneticEvolutionaryPatterns2020)|[@mottokIntegrativeGenomicAnalysis2019]|| |
|
| 95 | 95 | |[MTOR](MTOR)|Tier 1 GE[@zhangGeneticHeterogeneityDiffuse2013], FE[@grabinerDiverseArrayCancerassociated2014]|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)|[@paneaWholeGenomeLandscape2019]|| |
| 96 | -|[MYC](MYC)|Tier 1 GE[@pasqualucciHypermutationMultipleProtooncogenes2001], FE[@freieGermlinePointMutation2024], aSHM|[Pasqualucci et al](papers/pasqualucciHypermutationMultipleProtooncogenes2001)|[@dunsCharacterizationDLBCLPMBL2021b; @jalladesExomeSequencingIdentifies2017; @johnstonCmycHypermutationBurkitt1992]|| |
|
| 96 | +|[MYC](MYC)|Tier 1 GE[@pasqualucciHypermutationMultipleProtooncogenes2001], FE[@freieGermlinePointMutation2024], aSHM|[Pasqualucci et al](papers/pasqualucciHypermutationMultipleProtooncogenes2001)|[@dunsCharacterizationDLBCLPMBL2021; @jalladesExomeSequencingIdentifies2017; @johnstonCmycHypermutationBurkitt1992]|| |
|
| 97 | 97 | |[MYD88](MYD88)|Tier 1 GE[@ngoOncogenicallyActiveMYD882011], FE[@ngoOncogenicallyActiveMYD882011]|[Ngo et al](papers/ngoOncogenicallyActiveMYD882011)|[@drevalGeneticSubdivisionsFollicular2023; @yanBCRTLRSignaling2012a]|| |
| 98 | -|[NFKBIA](NFKBIA)|Tier 1 GE[@thomasMutationalAnalysisIkappaBalpha2004], FE[@jungnickelClonalDeleteriousMutations2000]|[Thomas et al](papers/thomasMutationalAnalysisIkappaBalpha2004)|[@russler-germainMutationsAssociatedProgression2023; @wienandGenomicAnalysesFlowsorted2019b]|| |
|
| 98 | +|[NFKBIA](NFKBIA)|Tier 1 GE[@thomasMutationalAnalysisIkappaBalpha2004], FE[@jungnickelClonalDeleteriousMutations2000]|[Thomas et al](papers/thomasMutationalAnalysisIkappaBalpha2004)|[@russler-germainMutationsAssociatedProgression2023; @wienandGenomicAnalysesFlowsorted2019]|| |
|
| 99 | 99 | |[NFKBIE](NFKBIE)|Tier 1 GE[@morinGeneticLandscapesRelapsed2016], FE[@mansouriFunctionalLossIkBe2015]|[Morin et al](papers/morinGeneticLandscapesRelapsed2016)|[@mansouriFrequentNFKBIEDeletions2016; @pararajalingamCodingNoncodingDrivers2020]|| |
| 100 | 100 | |[NFKBIZ](NFKBIZ)|Tier 1 GE[@morinGeneticLandscapesRelapsed2016], FE[@arthurGenomewideDiscoverySomatic2018], aSHM|[Morin et al](papers/morinGeneticLandscapesRelapsed2016)||| |
| 101 | 101 | |[NOL9](NOL9)|Tier 1 GE[@schmitzGeneticsPathogenesisDiffuse2018]|[Schmitz et al](papers/schmitzGeneticsPathogenesisDiffuse2018)|[@spinaGeneticsNodalMarginal2016b]|| |
| ... | ... | @@ -103,8 +103,8 @@ link-citations: true |
| 103 | 103 | |[NOTCH2](NOTCH2)|Tier 1 GE[@zhangGeneticHeterogeneityDiffuse2013], FE[@leeGainoffunctionMutationsCopy2009]|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)|[@beaLandscapeSomaticMutations2013; @rossiCodingGenomeSplenic2012c]|| |
| 104 | 104 | |[OSBPL10](OSBPL10)|Tier 1 GE[@zhangGeneticHeterogeneityDiffuse2013], aSHM|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)||| |
| 105 | 105 | |[P2RY8](P2RY8)|Tier 1 GE[@lohrDiscoveryPrioritizationSomatic2012], FE[@muppidiLossSignalingGa132014]|[Lohr et al](papers/lohrDiscoveryPrioritizationSomatic2012)|[@drevalGeneticSubdivisionsFollicular2023; @muppidiLossSignalingGa132014]|| |
| 106 | -|[PIM1](PIM1)|Tier 1 GE[@pasqualucciHypermutationMultipleProtooncogenes2001], FE[@kuoRolePIM1Ibrutinibresistant2016], aSHM|[Pasqualucci et al](papers/pasqualucciHypermutationMultipleProtooncogenes2001)|[@burkhardtClinicalRelevanceMolecular2022; @drevalGeneticSubdivisionsFollicular2023; @dunsCharacterizationDLBCLPMBL2021b]|| |
|
| 107 | -|[PIM2](PIM2)|Tier 1 GE[@reddyGeneticFunctionalDrivers2017], aSHM|[Reddy et al](papers/reddyGeneticFunctionalDrivers2017)|[@reichelFlowSortingExome2015a]|| |
|
| 106 | +|[PIM1](PIM1)|Tier 1 GE[@pasqualucciHypermutationMultipleProtooncogenes2001], FE[@kuoRolePIM1Ibrutinibresistant2016], aSHM|[Pasqualucci et al](papers/pasqualucciHypermutationMultipleProtooncogenes2001)|[@burkhardtClinicalRelevanceMolecular2022; @drevalGeneticSubdivisionsFollicular2023; @dunsCharacterizationDLBCLPMBL2021]|| |
|
| 107 | +|[PIM2](PIM2)|Tier 1 GE[@reddyGeneticFunctionalDrivers2017], aSHM|[Reddy et al](papers/reddyGeneticFunctionalDrivers2017)|[@reichelFlowSortingExome2015]|| |
|
| 108 | 108 | |[POU2AF1](POU2AF1)|Tier 1 GE[@chapuyMolecularSubtypesDiffuse2018], FE[@gonzalez-rinconUnravelingTransformationFollicular2019], aSHM|[Chapuy et al](papers/chapuyMolecularSubtypesDiffuse2018)|[@krysiakRecurrentSomaticMutations2017]|| |
| 109 | 109 | |[POU2F2](POU2F2)|Tier 1 GE[@lohrDiscoveryPrioritizationSomatic2012], FE[@hodsonRegulationNormalBcell2016]|[Lohr et al](papers/lohrDiscoveryPrioritizationSomatic2012)|[@krysiakRecurrentSomaticMutations2017]|| |
| 110 | 110 | |[PRDM1](PRDM1)|Tier 1 GE[@pasqualucciInactivationPRDM1BLIMP12006], FE[@pasqualucciInactivationPRDM1BLIMP12006]|[Pasqualucci et al](papers/pasqualucciInactivationPRDM1BLIMP12006)||| |
| ... | ... | @@ -117,27 +117,27 @@ link-citations: true |
| 117 | 117 | |[S1PR2](S1PR2)|Tier 1 GE[@morinFrequentMutationHistonemodifying2011], FE[@muppidiLossSignalingGa132014], aSHM|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)|[@drevalGeneticSubdivisionsFollicular2023; @muppidiLossSignalingGa132014]|| |
| 118 | 118 | |[SETD1B](SETD1B)|Tier 1 GE[@albuquerqueEnhancingKnowledgeDiscovery2017], FE[@]|[Albuquerque et al](papers/albuquerqueEnhancingKnowledgeDiscovery2017)||| |
| 119 | 119 | |[SF3B1](SF3B1)|Tier 1 GE[@reddyGeneticFunctionalDrivers2017], FE[@cazzolaBiologicClinicalSignificance2013]|[Reddy et al](papers/reddyGeneticFunctionalDrivers2017)|[@loveGeneticLandscapeMutations2012]|| |
| 120 | -|[SGK1](SGK1)|Tier 1 GE[@morinFrequentMutationHistonemodifying2011], FE[@gaoSGK1MutationsDLBCL2021], aSHM|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)|[@dunsCharacterizationDLBCLPMBL2021b]|| |
|
| 120 | +|[SGK1](SGK1)|Tier 1 GE[@morinFrequentMutationHistonemodifying2011], FE[@gaoSGK1MutationsDLBCL2021], aSHM|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)|[@dunsCharacterizationDLBCLPMBL2021]|| |
|
| 121 | 121 | |[SIN3A](SIN3A)|Tier 1 GE[@chapuyMolecularSubtypesDiffuse2018]|[Chapuy et al](papers/chapuyMolecularSubtypesDiffuse2018)|[@grandeGenomewideDiscoverySomatic2019; @rossiCodingGenomeSplenic2012c]|| |
| 122 | 122 | |[SMARCA4](SMARCA4)|Tier 1 GE[@reddyGeneticFunctionalDrivers2017], FE[@fernandoFunctionalCharacterizationSMARCA42020]|[Reddy et al](papers/reddyGeneticFunctionalDrivers2017)|[@krysiakRecurrentSomaticMutations2017; @nadeuGenomicEpigenomicInsights2020b; @richterRecurrentMutationID32012]|| |
| 123 | -|[SOCS1](SOCS1)|Tier 1 GE[@morinFrequentMutationHistonemodifying2011], FE[@melznerBiallelicMutationSOCS12005], aSHM|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)|[@drevalGeneticSubdivisionsFollicular2023; @wenigerMutationsTumorSuppressor2006a]|| |
|
| 124 | -|[SPEN](SPEN)|Tier 1 GE[@albuquerqueEnhancingKnowledgeDiscovery2017]|[Albuquerque et al](papers/albuquerqueEnhancingKnowledgeDiscovery2017)|[@rossiCodingGenomeSplenic2012c; @sarkozyMutationalLandscapeGray2021a]|| |
|
| 123 | +|[SOCS1](SOCS1)|Tier 1 GE[@morinFrequentMutationHistonemodifying2011], FE[@melznerBiallelicMutationSOCS12005], aSHM|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)|[@drevalGeneticSubdivisionsFollicular2023; @wenigerMutationsTumorSuppressor2006]|| |
|
| 124 | +|[SPEN](SPEN)|Tier 1 GE[@albuquerqueEnhancingKnowledgeDiscovery2017]|[Albuquerque et al](papers/albuquerqueEnhancingKnowledgeDiscovery2017)|[@rossiCodingGenomeSplenic2012c; @sarkozyMutationalLandscapeGray2021]|| |
|
| 125 | 125 | |[STAT3](STAT3)|Tier 1 GE[@morinFrequentMutationHistonemodifying2011], FE[@huNovelMissenseM206K2013a]|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)||| |
| 126 | -|[STAT6](STAT6)|Tier 1 GE[@yildizActivatingSTAT6Mutations2015c], FE[@mentzPARP14NovelTarget2022]|[Yildiz et al](papers/yildizActivatingSTAT6Mutations2015c)|[@ritzRecurrentMutationsSTAT62009a; @yildizActivatingSTAT6Mutations2015]|| |
|
| 126 | +|[STAT6](STAT6)|Tier 1 GE[@yildizActivatingSTAT6Mutations2015c], FE[@mentzPARP14NovelTarget2022]|[Yildiz et al](papers/yildizActivatingSTAT6Mutations2015c)|[@ritzRecurrentMutationsSTAT62009; @yildizActivatingSTAT6Mutations2015]|| |
|
| 127 | 127 | |[TAF1](TAF1)|Tier 1 GE[@morinMutationalStructuralAnalysis2013]|[Morin et al](papers/morinMutationalStructuralAnalysis2013)|[@spinaGeneticsNodalMarginal2016b]|| |
| 128 | 128 | |[TBL1XR1](TBL1XR1)|Tier 1 GE[@lohrDiscoveryPrioritizationSomatic2012], FE[@venturuttiTBL1XR1MutationsDrive2020]|[Lohr et al](papers/lohrDiscoveryPrioritizationSomatic2012)|[@drevalGeneticSubdivisionsFollicular2023; @rossiCodingGenomeSplenic2012c]|| |
| 129 | 129 | |[TET2](TET2)|Tier 1 GE[@albuquerqueEnhancingKnowledgeDiscovery2017], FE[@asmarGenomewideProfilingIdentifies2013]|[Albuquerque et al](papers/albuquerqueEnhancingKnowledgeDiscovery2017)|[@thomasGeneticSubgroupsInform2023]|| |
| 130 | 130 | |[TMEM30A](TMEM30A)|Tier 1 GE[@morinFrequentMutationHistonemodifying2011], FE[@ennishiTMEM30ALossoffunctionMutations2020]|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)||| |
| 131 | 131 | |[TMSB4X](TMSB4X)|Tier 1 GE[@reddyGeneticFunctionalDrivers2017], aSHM|[Reddy et al](papers/reddyGeneticFunctionalDrivers2017)|[@drevalGeneticSubdivisionsFollicular2023]|| |
| 132 | -|[TNFAIP3](TNFAIP3)|Tier 1 GE[@compagnoMutationsMultipleGenes2009], FE[@compagnoMutationsMultipleGenes2009]|[Compagno et al](papers/compagnoMutationsMultipleGenes2009)|[@drevalGeneticSubdivisionsFollicular2023; @rossiAlterationBIRC3Multiple2011a; @schmitzTNFAIP3A20Tumor2009a]|| |
|
| 132 | +|[TNFAIP3](TNFAIP3)|Tier 1 GE[@compagnoMutationsMultipleGenes2009], FE[@compagnoMutationsMultipleGenes2009]|[Compagno et al](papers/compagnoMutationsMultipleGenes2009)|[@drevalGeneticSubdivisionsFollicular2023; @rossiAlterationBIRC3Multiple2011a; @schmitzTNFAIP3A20Tumor2009]|| |
|
| 133 | 133 | |[TNFRSF14](TNFRSF14)|Tier 1 GE[@morinFrequentMutationHistonemodifying2011], FE[@]|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)|[@cheungAcquiredTNFRSF14Mutations2010; @spinaGeneticsNodalMarginal2016b]|| |
| 134 | 134 | |[TOX](TOX)|Tier 1 GE[@reddyGeneticFunctionalDrivers2017]|[Reddy et al](papers/reddyGeneticFunctionalDrivers2017)||| |
| 135 | -|[TP53](TP53)|Tier 1 GE[@morinFrequentMutationHistonemodifying2011], FE[@katoUnderstandingFunctionstructureFunctionmutation2003]|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)|[@beaLandscapeSomaticMutations2013; @rossiCodingGenomeSplenic2012c; @tiacciPervasiveMutationsJAKSTAT2018b; @wildaInactivationARFMDM2p53Pathway2004]|| |
|
| 136 | -|[UBE2A](UBE2A)|Tier 1 GE[@lohrDiscoveryPrioritizationSomatic2012]|[Lohr et al](papers/lohrDiscoveryPrioritizationSomatic2012)|[@reichelFlowSortingExome2015a]|| |
|
| 137 | -|[WEE1](WEE1)|Tier 1 GE[@schmitzGeneticsPathogenesisDiffuse2018]|[Schmitz et al](papers/schmitzGeneticsPathogenesisDiffuse2018)|[@reichelFlowSortingExome2015a]|| |
|
| 138 | -|[XPO1](XPO1)|Tier 1 GE[@mareschalWholeExomeSequencing2016], FE[@miloudiXPO1E571KMutationModifies2020]|[Mareschal et al](papers/mareschalWholeExomeSequencing2016)|[@jardinRecurrentMutationsExportin2016a]|| |
|
| 135 | +|[TP53](TP53)|Tier 1 GE[@morinFrequentMutationHistonemodifying2011], FE[@katoUnderstandingFunctionstructureFunctionmutation2003]|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)|[@beaLandscapeSomaticMutations2013; @rossiCodingGenomeSplenic2012c; @tiacciPervasiveMutationsJAKSTAT2018; @wildaInactivationARFMDM2p53Pathway2004]|| |
|
| 136 | +|[UBE2A](UBE2A)|Tier 1 GE[@lohrDiscoveryPrioritizationSomatic2012]|[Lohr et al](papers/lohrDiscoveryPrioritizationSomatic2012)|[@reichelFlowSortingExome2015]|| |
|
| 137 | +|[WEE1](WEE1)|Tier 1 GE[@schmitzGeneticsPathogenesisDiffuse2018]|[Schmitz et al](papers/schmitzGeneticsPathogenesisDiffuse2018)|[@reichelFlowSortingExome2015]|| |
|
| 138 | +|[XPO1](XPO1)|Tier 1 GE[@mareschalWholeExomeSequencing2016], FE[@miloudiXPO1E571KMutationModifies2020]|[Mareschal et al](papers/mareschalWholeExomeSequencing2016)|[@jardinRecurrentMutationsExportin2016]|| |
|
| 139 | 139 | |[ZC3H12A](ZC3H12A)|Tier 1 GE[@chapuyMolecularSubtypesDiffuse2018], FE[@skalniakRegulatoryFeedbackLoop2009]|[Chapuy et al](papers/chapuyMolecularSubtypesDiffuse2018)||| |
| 140 | -|[ZFP36L1](ZFP36L1)|Tier 1 GE[@morinFrequentMutationHistonemodifying2011], aSHM|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)|[@paneaWholeGenomeLandscape2019; @reichelFlowSortingExome2015a]|| |
|
| 140 | +|[ZFP36L1](ZFP36L1)|Tier 1 GE[@morinFrequentMutationHistonemodifying2011], aSHM|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)|[@paneaWholeGenomeLandscape2019; @reichelFlowSortingExome2015]|| |
|
| 141 | 141 | |[ZNF292](ZNF292)|Tier 1 GE[@reddyGeneticFunctionalDrivers2017]|[Reddy et al](papers/reddyGeneticFunctionalDrivers2017)||| |
| 142 | 142 | |[ZNF608](ZNF608)|Tier 1 GE[@morinMutationalStructuralAnalysis2013]|[Morin et al](papers/morinMutationalStructuralAnalysis2013)|[@krysiakRecurrentSomaticMutations2017]|| |
| 143 | 143 | |
| ... | ... | @@ -162,7 +162,7 @@ link-citations: true |
| 162 | 162 | |[BCL11A](BCL11A)|Tier 2 GE[@chapuyMolecularSubtypesDiffuse2018], aSHM|[Chapuy et al](papers/chapuyMolecularSubtypesDiffuse2018)||| |
| 163 | 163 | |[BCL2L10](BCL2L10)|Tier 2 GE[@pasqualucciAnalysisCodingGenome2011]|[Pasqualucci et al](papers/pasqualucciAnalysisCodingGenome2011)||| |
| 164 | 164 | |[BCR](BCR)|Tier 2 GE[@lohrDiscoveryPrioritizationSomatic2012]|[Lohr et al](papers/lohrDiscoveryPrioritizationSomatic2012)||| |
| 165 | -|[BIRC3](BIRC3)|Tier 2 GE[@arthurGenomewideDiscoverySomatic2018], aSHM|[Arthur et al](papers/arthurGenomewideDiscoverySomatic2018)|[@beaLandscapeSomaticMutations2013; @dunsCharacterizationDLBCLPMBL2021b; @rossiAlterationBIRC3Multiple2011a]|| |
|
| 165 | +|[BIRC3](BIRC3)|Tier 2 GE[@arthurGenomewideDiscoverySomatic2018], aSHM|[Arthur et al](papers/arthurGenomewideDiscoverySomatic2018)|[@beaLandscapeSomaticMutations2013; @dunsCharacterizationDLBCLPMBL2021; @rossiAlterationBIRC3Multiple2011a]|| |
|
| 166 | 166 | |[BLK](BLK)|Tier 2 GE, aSHM|||| |
| 167 | 167 | |[BRINP3](BRINP3)|Tier 2 GE[@reddyGeneticFunctionalDrivers2017]|[Reddy et al](papers/reddyGeneticFunctionalDrivers2017)||PASS| |
| 168 | 168 | |[BRSK1](BRSK1)|Tier 2 GE[@pasqualucciAnalysisCodingGenome2011]|[Pasqualucci et al](papers/pasqualucciAnalysisCodingGenome2011)||| |
| ... | ... | @@ -183,7 +183,7 @@ link-citations: true |
| 183 | 183 | |[COQ7](COQ7)|Tier 2 GE[@chapuyMolecularSubtypesDiffuse2018]|[Chapuy et al](papers/chapuyMolecularSubtypesDiffuse2018)||PASS| |
| 184 | 184 | |[CPS1](CPS1)|Tier 2 GE[@lohrDiscoveryPrioritizationSomatic2012]|[Lohr et al](papers/lohrDiscoveryPrioritizationSomatic2012)||| |
| 185 | 185 | |[CRIP1](CRIP1)|Tier 2 GE[@chapuyMolecularSubtypesDiffuse2018]|[Chapuy et al](papers/chapuyMolecularSubtypesDiffuse2018)||PASS| |
| 186 | -|[CXCR5](CXCR5)|Tier 2 GE[@schmitzGeneticsPathogenesisDiffuse2018]|[Schmitz et al](papers/schmitzGeneticsPathogenesisDiffuse2018)|[@mottokIntegrativeGenomicAnalysis2019b]|| |
|
| 186 | +|[CXCR5](CXCR5)|Tier 2 GE[@schmitzGeneticsPathogenesisDiffuse2018]|[Schmitz et al](papers/schmitzGeneticsPathogenesisDiffuse2018)|[@mottokIntegrativeGenomicAnalysis2019]|| |
|
| 187 | 187 | |[CYTSB](CYTSB)|Tier 2 GE[@pasqualucciAnalysisCodingGenome2011]|[Pasqualucci et al](papers/pasqualucciAnalysisCodingGenome2011)||| |
| 188 | 188 | |[DAZAP1](DAZAP1)|Tier 2 GE[@pararajalingamCodingNoncodingDrivers2020]|[Pararajalingam et al](papers/pararajalingamCodingNoncodingDrivers2020)||| |
| 189 | 189 | |[DCHS1](DCHS1)|Tier 2 GE[@pasqualucciAnalysisCodingGenome2011]|[Pasqualucci et al](papers/pasqualucciAnalysisCodingGenome2011)||| |
| ... | ... | @@ -231,13 +231,13 @@ link-citations: true |
| 231 | 231 | |[ID3](ID3)|Tier 2 GE[@schmitzGeneticsPathogenesisDiffuse2018]|[Schmitz et al](papers/schmitzGeneticsPathogenesisDiffuse2018)|[@richterRecurrentMutationID32012; @spinaGeneticsNodalMarginal2016b]|| |
| 232 | 232 | |[IFNGR1](IFNGR1)|Tier 2 GE[@morinMutationalStructuralAnalysis2013]|[Morin et al](papers/morinMutationalStructuralAnalysis2013)||PASS| |
| 233 | 233 | |[IGLL5](IGLL5)|Tier 2 GE[@chapuyMolecularSubtypesDiffuse2018], aSHM|[Chapuy et al](papers/chapuyMolecularSubtypesDiffuse2018)|[@deschGenotypingCirculatingTumor2020; @paneaWholeGenomeLandscape2019; @russler-germainMutationsAssociatedProgression2023]|| |
| 234 | -|[IKBKB](IKBKB)|Tier 2 GE[@reddyGeneticFunctionalDrivers2017]|[Reddy et al](papers/reddyGeneticFunctionalDrivers2017)|[@rossiAlterationBIRC3Multiple2011a; @wienandGenomicAnalysesFlowsorted2019b]|PASS| |
|
| 234 | +|[IKBKB](IKBKB)|Tier 2 GE[@reddyGeneticFunctionalDrivers2017]|[Reddy et al](papers/reddyGeneticFunctionalDrivers2017)|[@rossiAlterationBIRC3Multiple2011a; @wienandGenomicAnalysesFlowsorted2019]|PASS| |
|
| 235 | 235 | |[IKBKE](IKBKE)|Tier 2 GE[@hubschmannMutationalMechanismsShaping2021]|[Hubschmann et al](papers/hubschmannMutationalMechanismsShaping2021)||PASS| |
| 236 | 236 | |[IL16](IL16)|Tier 2 GE[@reddyGeneticFunctionalDrivers2017]|[Reddy et al](papers/reddyGeneticFunctionalDrivers2017)||| |
| 237 | 237 | |[IL6](IL6)|Tier 2 GE[@chapuyMolecularSubtypesDiffuse2018]|[Chapuy et al](papers/chapuyMolecularSubtypesDiffuse2018)||PASS| |
| 238 | 238 | |[INO80](INO80)|Tier 2 GE[@reddyGeneticFunctionalDrivers2017]|[Reddy et al](papers/reddyGeneticFunctionalDrivers2017)||| |
| 239 | 239 | |[IRF1](IRF1)|Tier 2 GE[@hubschmannMutationalMechanismsShaping2021], aSHM|[Hubschmann et al](papers/hubschmannMutationalMechanismsShaping2021)||PASS| |
| 240 | -|[JAK1](JAK1)|Tier 2 GE[@reddyGeneticFunctionalDrivers2017]|[Reddy et al](papers/reddyGeneticFunctionalDrivers2017)|[@mottokIntegrativeGenomicAnalysis2019b]|| |
|
| 240 | +|[JAK1](JAK1)|Tier 2 GE[@reddyGeneticFunctionalDrivers2017]|[Reddy et al](papers/reddyGeneticFunctionalDrivers2017)|[@mottokIntegrativeGenomicAnalysis2019]|| |
|
| 241 | 241 | |[JAK3](JAK3)|Tier 2 GE[@reddyGeneticFunctionalDrivers2017]|[Reddy et al](papers/reddyGeneticFunctionalDrivers2017)||| |
| 242 | 242 | |[KCMF1](KCMF1)|Tier 2 GE[@reddyGeneticFunctionalDrivers2017]|[Reddy et al](papers/reddyGeneticFunctionalDrivers2017)||PASS| |
| 243 | 243 | |[KDM2B](KDM2B)|Tier 2 GE[@pasqualucciAnalysisCodingGenome2011]|[Pasqualucci et al](papers/pasqualucciAnalysisCodingGenome2011)||| |
| ... | ... | @@ -253,12 +253,12 @@ link-citations: true |
| 253 | 253 | |[MAGT1](MAGT1)|Tier 2 GE[@reddyGeneticFunctionalDrivers2017]|[Reddy et al](papers/reddyGeneticFunctionalDrivers2017)||PASS| |
| 254 | 254 | |[MALAT1](MALAT1)|Tier 2 GE[@arthurGenomewideDiscoverySomatic2018], aSHM|[Arthur et al](papers/arthurGenomewideDiscoverySomatic2018)||| |
| 255 | 255 | |[MAP2K1](MAP2K1)|Tier 2 GE[@shinBRAFV600EMAP2K12015]|[Shin et al](papers/shinBRAFV600EMAP2K12015)|[@louissaintPediatrictypeNodalFollicular2016]|| |
| 256 | -|[MCL1](MCL1)|Tier 2 GE[@reddyGeneticFunctionalDrivers2017]|[Reddy et al](papers/reddyGeneticFunctionalDrivers2017)|[@dunsCharacterizationDLBCLPMBL2021b; @paneaWholeGenomeLandscape2019]|PASS| |
|
| 256 | +|[MCL1](MCL1)|Tier 2 GE[@reddyGeneticFunctionalDrivers2017]|[Reddy et al](papers/reddyGeneticFunctionalDrivers2017)|[@dunsCharacterizationDLBCLPMBL2021; @paneaWholeGenomeLandscape2019]|PASS| |
|
| 257 | 257 | |[MECOM](MECOM)|Tier 2 GE[@reddyGeneticFunctionalDrivers2017]|[Reddy et al](papers/reddyGeneticFunctionalDrivers2017)||PASS| |
| 258 | 258 | |[MED12L](MED12L)|Tier 2 GE[@pasqualucciAnalysisCodingGenome2011]|[Pasqualucci et al](papers/pasqualucciAnalysisCodingGenome2011)||| |
| 259 | 259 | |[MET](MET)|Tier 2 GE[@reddyGeneticFunctionalDrivers2017]|[Reddy et al](papers/reddyGeneticFunctionalDrivers2017)||PASS| |
| 260 | 260 | |[MIR155HG](MIR155HG)|Tier 2 GE, aSHM|||| |
| 261 | -|[MPDZ](MPDZ)|Tier 2 GE[@morinMutationalStructuralAnalysis2013]|[Morin et al](papers/morinMutationalStructuralAnalysis2013)|[@reichelFlowSortingExome2015a]|PASS| |
|
| 261 | +|[MPDZ](MPDZ)|Tier 2 GE[@morinMutationalStructuralAnalysis2013]|[Morin et al](papers/morinMutationalStructuralAnalysis2013)|[@reichelFlowSortingExome2015]|PASS| |
|
| 262 | 262 | |[MSH6](MSH6)|Tier 2 GE[@reddyGeneticFunctionalDrivers2017]|[Reddy et al](papers/reddyGeneticFunctionalDrivers2017)||PASS| |
| 263 | 263 | |[MTMR8](MTMR8)|Tier 2 GE[@pasqualucciAnalysisCodingGenome2011]|[Pasqualucci et al](papers/pasqualucciAnalysisCodingGenome2011)||| |
| 264 | 264 | |[MYBPC2](MYBPC2)|Tier 2 GE[@schmitzGeneticsPathogenesisDiffuse2018]|[Schmitz et al](papers/schmitzGeneticsPathogenesisDiffuse2018)||| |
| ... | ... | @@ -297,7 +297,7 @@ link-citations: true |
| 297 | 297 | |[RASGEF1A](RASGEF1A)|Tier 2 GE[@pasqualucciAnalysisCodingGenome2011]|[Pasqualucci et al](papers/pasqualucciAnalysisCodingGenome2011)||| |
| 298 | 298 | |[RBP3](RBP3)|Tier 2 GE[@lohrDiscoveryPrioritizationSomatic2012]|[Lohr et al](papers/lohrDiscoveryPrioritizationSomatic2012)|[@loveGeneticLandscapeMutations2012]|| |
| 299 | 299 | |[RCC](RCC)|Tier 2 GE, aSHM|||| |
| 300 | -|[RFTN1](RFTN1)|Tier 2 GE[@arthurGenomewideDiscoverySomatic2018], aSHM|[Arthur et al](papers/arthurGenomewideDiscoverySomatic2018)|[@dunsCharacterizationDLBCLPMBL2021b]|| |
|
| 300 | +|[RFTN1](RFTN1)|Tier 2 GE[@arthurGenomewideDiscoverySomatic2018], aSHM|[Arthur et al](papers/arthurGenomewideDiscoverySomatic2018)|[@dunsCharacterizationDLBCLPMBL2021]|| |
|
| 301 | 301 | |[RFXAP](RFXAP)|Tier 2 GE|||| |
| 302 | 302 | |[RGAG1](RGAG1)|Tier 2 GE[@pasqualucciAnalysisCodingGenome2011]|[Pasqualucci et al](papers/pasqualucciAnalysisCodingGenome2011)||| |
| 303 | 303 | |[RHEX](RHEX)|Tier 2 GE[@arthurGenomewideDiscoverySomatic2018], aSHM|[Arthur et al](papers/arthurGenomewideDiscoverySomatic2018)||| |
| ... | ... | @@ -310,8 +310,8 @@ link-citations: true |
| 310 | 310 | |[SERPINA1](SERPINA1)|Tier 2 GE[@pasqualucciAnalysisCodingGenome2011]|[Pasqualucci et al](papers/pasqualucciAnalysisCodingGenome2011)||| |
| 311 | 311 | |[SERPINA9](SERPINA9)|Tier 2 GE[@arthurGenomewideDiscoverySomatic2018], aSHM|[Arthur et al](papers/arthurGenomewideDiscoverySomatic2018)||| |
| 312 | 312 | |[SETD2](SETD2)|Tier 2 GE[@zhangGeneticHeterogeneityDiffuse2013]|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)||| |
| 313 | -|[SETD5](SETD5)|Tier 2 GE[@reddyGeneticFunctionalDrivers2017]|[Reddy et al](papers/reddyGeneticFunctionalDrivers2017)|[@tiacciPervasiveMutationsJAKSTAT2018b]|PASS| |
|
| 314 | -|[SIAH2](SIAH2)|Tier 2 GE[@hubschmannMutationalMechanismsShaping2021]|[Hubschmann et al](papers/hubschmannMutationalMechanismsShaping2021)|[@reichelFlowSortingExome2015a]|PASS| |
|
| 313 | +|[SETD5](SETD5)|Tier 2 GE[@reddyGeneticFunctionalDrivers2017]|[Reddy et al](papers/reddyGeneticFunctionalDrivers2017)|[@tiacciPervasiveMutationsJAKSTAT2018]|PASS| |
|
| 314 | +|[SIAH2](SIAH2)|Tier 2 GE[@hubschmannMutationalMechanismsShaping2021]|[Hubschmann et al](papers/hubschmannMutationalMechanismsShaping2021)|[@reichelFlowSortingExome2015]|PASS| |
|
| 315 | 315 | |[SLC34A2](SLC34A2)|Tier 2 GE[@hubschmannMutationalMechanismsShaping2021]|[Hubschmann et al](papers/hubschmannMutationalMechanismsShaping2021)||PASS| |
| 316 | 316 | |[SLC38A8](SLC38A8)|Tier 2 GE[@lohrDiscoveryPrioritizationSomatic2012]|[Lohr et al](papers/lohrDiscoveryPrioritizationSomatic2012)||| |
| 317 | 317 | |[SLITRK6](SLITRK6)|Tier 2 GE[@lohrDiscoveryPrioritizationSomatic2012]|[Lohr et al](papers/lohrDiscoveryPrioritizationSomatic2012)||| |
| ... | ... | @@ -320,7 +320,7 @@ link-citations: true |
| 320 | 320 | |[SRPX](SRPX)|Tier 2 GE[@lohrDiscoveryPrioritizationSomatic2012]|[Lohr et al](papers/lohrDiscoveryPrioritizationSomatic2012)||| |
| 321 | 321 | |[SRRM2](SRRM2)|Tier 2 GE[@morinMutationalStructuralAnalysis2013]|[Morin et al](papers/morinMutationalStructuralAnalysis2013)|[@russler-germainMutationsAssociatedProgression2023]|PASS| |
| 322 | 322 | |[ST6GAL1](ST6GAL1)|Tier 2 GE[@arthurGenomewideDiscoverySomatic2018], aSHM|[Arthur et al](papers/arthurGenomewideDiscoverySomatic2018)||| |
| 323 | -|[STAT5B](STAT5B)|Tier 2 GE[@reddyGeneticFunctionalDrivers2017]|[Reddy et al](papers/reddyGeneticFunctionalDrivers2017)|[@tiacciPervasiveMutationsJAKSTAT2018b]|| |
|
| 323 | +|[STAT5B](STAT5B)|Tier 2 GE[@reddyGeneticFunctionalDrivers2017]|[Reddy et al](papers/reddyGeneticFunctionalDrivers2017)|[@tiacciPervasiveMutationsJAKSTAT2018]|| |
|
| 324 | 324 | |[SYN2](SYN2)|Tier 2 GE[@lohrDiscoveryPrioritizationSomatic2012]|[Lohr et al](papers/lohrDiscoveryPrioritizationSomatic2012)||| |
| 325 | 325 | |[SYPL1](SYPL1)|Tier 2 GE[@morinMutationalStructuralAnalysis2013]|[Morin et al](papers/morinMutationalStructuralAnalysis2013)||PASS| |
| 326 | 326 | |[TAP1](TAP1)|Tier 2 GE[@schmitzGeneticsPathogenesisDiffuse2018]|[Schmitz et al](papers/schmitzGeneticsPathogenesisDiffuse2018)||| |
| ... | ... | @@ -333,7 +333,7 @@ link-citations: true |
| 333 | 333 | |[TLR2](TLR2)|Tier 2 GE[@chapuyMolecularSubtypesDiffuse2018]|[Chapuy et al](papers/chapuyMolecularSubtypesDiffuse2018)|[@beaLandscapeSomaticMutations2013]|PASS| |
| 334 | 334 | |[TMSL3](TMSL3)|Tier 2 GE[@lohrDiscoveryPrioritizationSomatic2012]|[Lohr et al](papers/lohrDiscoveryPrioritizationSomatic2012)||| |
| 335 | 335 | |[TNF](TNF)|Tier 2 GE[@lohrDiscoveryPrioritizationSomatic2012]|[Lohr et al](papers/lohrDiscoveryPrioritizationSomatic2012)||| |
| 336 | -|[TRAF3](TRAF3)|Tier 2 GE[@pasqualucciAnalysisCodingGenome2011]|[Pasqualucci et al](papers/pasqualucciAnalysisCodingGenome2011)|[@ottoGeneticLesionsTRAF32012a; @rossiAlterationBIRC3Multiple2011a]|| |
|
| 336 | +|[TRAF3](TRAF3)|Tier 2 GE[@pasqualucciAnalysisCodingGenome2011]|[Pasqualucci et al](papers/pasqualucciAnalysisCodingGenome2011)|[@ottoGeneticLesionsTRAF32012; @rossiAlterationBIRC3Multiple2011a]|| |
|
| 337 | 337 | |[TRAF6](TRAF6)|Tier 2 GE[@hubschmannMutationalMechanismsShaping2021]|[Hubschmann et al](papers/hubschmannMutationalMechanismsShaping2021)||PASS| |
| 338 | 338 | |[TRIP12](TRIP12)|Tier 2 GE|||| |
| 339 | 339 | |[TSC22D1](TSC22D1)|Tier 2 GE[@pasqualucciAnalysisCodingGenome2011]|[Pasqualucci et al](papers/pasqualucciAnalysisCodingGenome2011)||| |
| ... | ... | @@ -352,7 +352,7 @@ link-citations: true |
| 352 | 352 | |[ZCCHC7](ZCCHC7)|Tier 2 GE[@arthurGenomewideDiscoverySomatic2018], aSHM|[Arthur et al](papers/arthurGenomewideDiscoverySomatic2018)||| |
| 353 | 353 | |[ZEB2](ZEB2)|Tier 2 GE[@reddyGeneticFunctionalDrivers2017]|[Reddy et al](papers/reddyGeneticFunctionalDrivers2017)||| |
| 354 | 354 | |[ZFX](ZFX)|Tier 2 GE[@reddyGeneticFunctionalDrivers2017]|[Reddy et al](papers/reddyGeneticFunctionalDrivers2017)||PASS| |
| 355 | -|[ZNF217](ZNF217)|Tier 2 GE[@hubschmannMutationalMechanismsShaping2021]|[Hubschmann et al](papers/hubschmannMutationalMechanismsShaping2021)|[@reichelFlowSortingExome2015a]|PASS| |
|
| 355 | +|[ZNF217](ZNF217)|Tier 2 GE[@hubschmannMutationalMechanismsShaping2021]|[Hubschmann et al](papers/hubschmannMutationalMechanismsShaping2021)|[@reichelFlowSortingExome2015]|PASS| |
|
| 356 | 356 | |[ZNF385B](ZNF385B)|Tier 2 GE[@lohrDiscoveryPrioritizationSomatic2012]|[Lohr et al](papers/lohrDiscoveryPrioritizationSomatic2012)||| |
| 357 | 357 | |[ZNF423](ZNF423)|Tier 2 GE[@chapuyMolecularSubtypesDiffuse2018]|[Chapuy et al](papers/chapuyMolecularSubtypesDiffuse2018)||PASS| |
| 358 | 358 | |[ZNF521](ZNF521)|Tier 2 GE[@pasqualucciAnalysisCodingGenome2011]|[Pasqualucci et al](papers/pasqualucciAnalysisCodingGenome2011)||| |
| ... | ... | @@ -479,7 +479,7 @@ link-citations: true |
| 479 | 479 | |[EGFR](EGFR)|Tier 3 GE[@fanComprehensiveCharacterizationDriver2020]|[Fan et al](papers/fanComprehensiveCharacterizationDriver2020)||| |
| 480 | 480 | |[EPHA3](EPHA3)|Tier 3 GE[@zhangGeneticHeterogeneityDiffuse2013]|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)||| |
| 481 | 481 | |[EPHA5](EPHA5)|Tier 3 GE[@zhangGeneticHeterogeneityDiffuse2013]|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)||| |
| 482 | -|[EPHA7](EPHA7)|Tier 3 GE[@zhangGeneticHeterogeneityDiffuse2013]|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)|[@mottokIntegrativeGenomicAnalysis2019b]|| |
|
| 482 | +|[EPHA7](EPHA7)|Tier 3 GE[@zhangGeneticHeterogeneityDiffuse2013]|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)|[@mottokIntegrativeGenomicAnalysis2019]|| |
|
| 483 | 483 | |[ERBB3](ERBB3)|Tier 3 GE[@zhangGeneticHeterogeneityDiffuse2013]|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)||| |
| 484 | 484 | |[ERN2](ERN2)|Tier 3 GE[@zhangGeneticHeterogeneityDiffuse2013]|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)||| |
| 485 | 485 | |[ETNPPL](ETNPPL)|Tier 3 GE[@zhangGeneticHeterogeneityDiffuse2013]|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)||| |
| ... | ... | @@ -594,7 +594,7 @@ link-citations: true |
| 594 | 594 | |[NDUFS1](NDUFS1)|Tier 3 GE[@zhangGeneticHeterogeneityDiffuse2013]|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)||| |
| 595 | 595 | |[NELL2](NELL2)|Tier 3 GE[@zhangGeneticHeterogeneityDiffuse2013]|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)||| |
| 596 | 596 | |[NFIB](NFIB)|Tier 3 GE[@zhangGeneticHeterogeneityDiffuse2013]|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)||| |
| 597 | -|[NFKB2](NFKB2)|Tier 3 GE[@reddyGeneticFunctionalDrivers2017]|[Reddy et al](papers/reddyGeneticFunctionalDrivers2017)|[@mottokIntegrativeGenomicAnalysis2019b]|FAIL| |
|
| 597 | +|[NFKB2](NFKB2)|Tier 3 GE[@reddyGeneticFunctionalDrivers2017]|[Reddy et al](papers/reddyGeneticFunctionalDrivers2017)|[@mottokIntegrativeGenomicAnalysis2019]|FAIL| |
|
| 598 | 598 | |[NFX1](NFX1)|Tier 3 GE[@zhangGeneticHeterogeneityDiffuse2013]|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)||| |
| 599 | 599 | |[NGFR](NGFR)|Tier 3 GE[@zhangGeneticHeterogeneityDiffuse2013]|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)||| |
| 600 | 600 | |[NIPBL](NIPBL)|Tier 3 GE[@zhangGeneticHeterogeneityDiffuse2013]|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)||| |
| ... | ... | @@ -666,10 +666,10 @@ link-citations: true |
| 666 | 666 | |[RARA](RARA)|Tier 3 GE[@reddyGeneticFunctionalDrivers2017]|[Reddy et al](papers/reddyGeneticFunctionalDrivers2017)||FAIL| |
| 667 | 667 | |[RBM15B](RBM15B)|Tier 3 GE[@zhangGeneticHeterogeneityDiffuse2013]|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)||| |
| 668 | 668 | |[RECQL4](RECQL4)|Tier 3 GE[@fanComprehensiveCharacterizationDriver2020]|[Fan et al](papers/fanComprehensiveCharacterizationDriver2020)||| |
| 669 | -|[RELN](RELN)|Tier 3 GE[@zhangGeneticHeterogeneityDiffuse2013]|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)|[@sarkozyMutationalLandscapeGray2021a]|| |
|
| 669 | +|[RELN](RELN)|Tier 3 GE[@zhangGeneticHeterogeneityDiffuse2013]|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)|[@sarkozyMutationalLandscapeGray2021]|| |
|
| 670 | 670 | |[RET](RET)|Tier 3 GE[@fanComprehensiveCharacterizationDriver2020]|[Fan et al](papers/fanComprehensiveCharacterizationDriver2020)|[@loveGeneticLandscapeMutations2012]|| |
| 671 | 671 | |[RFC1](RFC1)|Tier 3 GE[@zhangGeneticHeterogeneityDiffuse2013]|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)||| |
| 672 | -|[RGS1](RGS1)|Tier 3 GE[@zhangGeneticHeterogeneityDiffuse2013]|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)|[@mottokIntegrativeGenomicAnalysis2019b]|| |
|
| 672 | +|[RGS1](RGS1)|Tier 3 GE[@zhangGeneticHeterogeneityDiffuse2013]|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)|[@mottokIntegrativeGenomicAnalysis2019]|| |
|
| 673 | 673 | |[RHPN2](RHPN2)|Tier 3 GE[@fanComprehensiveCharacterizationDriver2020]|[Fan et al](papers/fanComprehensiveCharacterizationDriver2020)||| |
| 674 | 674 | |[RIF1](RIF1)|Tier 3 GE[@fanComprehensiveCharacterizationDriver2020]|[Fan et al](papers/fanComprehensiveCharacterizationDriver2020)||| |
| 675 | 675 | |[RIMS4](RIMS4)|Tier 3 GE[@fanComprehensiveCharacterizationDriver2020]|[Fan et al](papers/fanComprehensiveCharacterizationDriver2020)||| |
| ... | ... | @@ -718,7 +718,7 @@ link-citations: true |
| 718 | 718 | |[TPR](TPR)|Tier 3 GE[@fanComprehensiveCharacterizationDriver2020]|[Fan et al](papers/fanComprehensiveCharacterizationDriver2020)||| |
| 719 | 719 | |[TPRKB](TPRKB)|Tier 3 GE[@zhangGeneticHeterogeneityDiffuse2013]|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)||| |
| 720 | 720 | |[TRIM37](TRIM37)|Tier 3 GE[@zhangGeneticHeterogeneityDiffuse2013]|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)||| |
| 721 | -|[TRIP11](TRIP11)|Tier 3 GE[@zhangGeneticHeterogeneityDiffuse2013]|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)|[@reichelFlowSortingExome2015a]|| |
|
| 721 | +|[TRIP11](TRIP11)|Tier 3 GE[@zhangGeneticHeterogeneityDiffuse2013]|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)|[@reichelFlowSortingExome2015]|| |
|
| 722 | 722 | |[TRRAP](TRRAP)|Tier 3 GE[@zhangGeneticHeterogeneityDiffuse2013]|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)|[@rossiCodingGenomeSplenic2012c]|| |
| 723 | 723 | |[TSC2](TSC2)|Tier 3 GE[@zhangGeneticHeterogeneityDiffuse2013]|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)||| |
| 724 | 724 | |[TSHZ2](TSHZ2)|Tier 3 GE[@zhangGeneticHeterogeneityDiffuse2013]|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)||| |