485d3c6b606613202fe9f7f4d066f4d088793ddd
PIK3R1.md
| ... | ... | @@ -61,7 +61,9 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/P |
| 61 | 61 | |
| 62 | 62 | ### DLBCL<sup>1</sup> |
| 63 | 63 | |
| 64 | - |
|
| 64 | + |
|
| 65 | +**Rating** |
|
| 66 | +★ ★ ★ ☆ ☆ |
|
| 65 | 67 | |
| 66 | 68 | ### BL<sup>2</sup> |
| 67 | 69 |
papers/paneaWholeGenomeLandscape2019.pdf
papers/paneaWholeGenomeLandscape2019_tmp.html
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| 368 | -<h1 id="paneawholegenomelandscape2019">@paneaWholeGenomeLandscape2019</h1> |
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| 369 | -<h2 id="summary-of-novel-genes">Summary of novel genes</h2> |
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| 370 | -<table> |
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| 371 | -<thead> |
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| 372 | -<tr> |
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| 373 | -<th style="text-align:center">Entity</th> |
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| 374 | -<th style="text-align:center">Tier 1 genes</th> |
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| 375 | -<th style="text-align:center">Tier 2 genes</th> |
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| 376 | -</tr> |
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| 377 | -</thead> |
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| 378 | -<tbody> |
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| 379 | -<tr> |
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| 380 | -<td style="text-align:center">BL</td> |
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| 381 | -<td style="text-align:center">4</td> |
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| 382 | -<td style="text-align:center">36</td> |
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| 383 | -</tr> |
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| 384 | -</tbody> |
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| 385 | -</table> |
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| 386 | -<pre><code class="language-mermaid"><div class="mermaid">--- |
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| 387 | -config: |
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| 388 | - sankey: |
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| 389 | - showValues: true |
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| 390 | - linkColor: target |
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| 391 | - width: 600 |
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| 392 | - height: 300 |
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| 393 | - nodeAlignment: right |
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| 394 | - prefix: '(' |
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| 395 | - suffix: ' genes)' |
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| 396 | ---- |
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| 397 | -sankey-beta |
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| 398 | -This study, New Tier 1, 4 |
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| 399 | -New Tier 1, BL Tier 1, 4 |
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| 400 | -This study, New Tier 2, 36 |
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| 401 | -New Tier 2, BL Tier 2, 36 |
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| 402 | -All other BL studies, BL Tier 1, 25 |
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| 403 | -All other BL studies, BL Tier 2, 111 |
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| 404 | -</div></code></pre> |
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| 405 | -<h2 id="novel-genes-reported-in-this-study">Novel genes reported in this study</h2> |
|
| 406 | -<h3 id="tier-1">Tier 1</h3> |
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| 407 | -<table> |
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| 408 | -<thead> |
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| 409 | -<tr> |
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| 410 | -<th style="text-align:left">Novel gene</th> |
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| 411 | -<th style="text-align:center">BL tier</th> |
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| 412 | -</tr> |
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| 413 | -</thead> |
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| 414 | -<tbody> |
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| 415 | -<tr> |
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| 416 | -<td style="text-align:left"><a href="../BMP7">BMP7</a></td> |
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| 417 | -<td style="text-align:center">1</td> |
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| 418 | -</tr> |
|
| 419 | -<tr> |
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| 420 | -<td style="text-align:left"><a href="../EIF4A1">EIF4A1</a></td> |
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| 421 | -<td style="text-align:center">1</td> |
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| 422 | -</tr> |
|
| 423 | -<tr> |
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| 424 | -<td style="text-align:left"><a href="../EPPK1">EPPK1</a></td> |
|
| 425 | -<td style="text-align:center">1</td> |
|
| 426 | -</tr> |
|
| 427 | -<tr> |
|
| 428 | -<td style="text-align:left"><a href="../HNRNPU">HNRNPU</a></td> |
|
| 429 | -<td style="text-align:center">1</td> |
|
| 430 | -</tr> |
|
| 431 | -</tbody> |
|
| 432 | -</table> |
|
| 433 | -<h3 id="tier-2">Tier 2</h3> |
|
| 434 | -<table> |
|
| 435 | -<thead> |
|
| 436 | -<tr> |
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| 437 | -<th style="text-align:left">Novel Gene</th> |
|
| 438 | -<th style="text-align:center">BL tier</th> |
|
| 439 | -<th style="text-align:center">Average variant quality</th> |
|
| 440 | -<th style="text-align:center">QC outcome</th> |
|
| 441 | -</tr> |
|
| 442 | -</thead> |
|
| 443 | -<tbody> |
|
| 444 | -<tr> |
|
| 445 | -<td style="text-align:left"><a href="../HIST1H3I">HIST1H3I</a></td> |
|
| 446 | -<td style="text-align:center">2</td> |
|
| 447 | -<td style="text-align:center">★ ★ ★ ★ ☆</td> |
|
| 448 | -<td style="text-align:center"><strong>Pass</strong></td> |
|
| 449 | -</tr> |
|
| 450 | -<tr> |
|
| 451 | -<td style="text-align:left"><a href="../CXCR4">CXCR4</a></td> |
|
| 452 | -<td style="text-align:center">2</td> |
|
| 453 | -<td style="text-align:center">★ ★ ★ ★ ☆</td> |
|
| 454 | -<td style="text-align:center"><strong>Pass</strong></td> |
|
| 455 | -</tr> |
|
| 456 | -<tr> |
|
| 457 | -<td style="text-align:left"><a href="../IRF8">IRF8</a></td> |
|
| 458 | -<td style="text-align:center">2</td> |
|
| 459 | -<td style="text-align:center">★ ★ ★ ★ ☆</td> |
|
| 460 | -<td style="text-align:center"><strong>Pass</strong></td> |
|
| 461 | -</tr> |
|
| 462 | -<tr> |
|
| 463 | -<td style="text-align:left"><a href="../MCL1">MCL1</a></td> |
|
| 464 | -<td style="text-align:center">2</td> |
|
| 465 | -<td style="text-align:center">★ ★ ★ ★ ☆</td> |
|
| 466 | -<td style="text-align:center"><strong>Pass</strong></td> |
|
| 467 | -</tr> |
|
| 468 | -<tr> |
|
| 469 | -<td style="text-align:left"><a href="../CD83">CD83</a></td> |
|
| 470 | -<td style="text-align:center">2</td> |
|
| 471 | -<td style="text-align:center">★ ★ ★ ☆ ☆</td> |
|
| 472 | -<td style="text-align:center"><strong>Pass</strong></td> |
|
| 473 | -</tr> |
|
| 474 | -<tr> |
|
| 475 | -<td style="text-align:left"><a href="../PLCG2">PLCG2</a></td> |
|
| 476 | -<td style="text-align:center">2</td> |
|
| 477 | -<td style="text-align:center">★ ★ ★ ☆ ☆</td> |
|
| 478 | -<td style="text-align:center"><strong>Pass</strong></td> |
|
| 479 | -</tr> |
|
| 480 | -<tr> |
|
| 481 | -<td style="text-align:left"><a href="../IGLL5">IGLL5</a></td> |
|
| 482 | -<td style="text-align:center">2</td> |
|
| 483 | -<td style="text-align:center">★ ★ ★ ★ ☆</td> |
|
| 484 | -<td style="text-align:center"><strong>Pass</strong></td> |
|
| 485 | -</tr> |
|
| 486 | -<tr> |
|
| 487 | -<td style="text-align:left"><a href="../HIST1H3D">HIST1H3D</a></td> |
|
| 488 | -<td style="text-align:center">2</td> |
|
| 489 | -<td style="text-align:center">★ ★ ★ ☆ ☆</td> |
|
| 490 | -<td style="text-align:center"><strong>Pass</strong></td> |
|
| 491 | -</tr> |
|
| 492 | -<tr> |
|
| 493 | -<td style="text-align:left"><a href="../WNK2">WNK2</a></td> |
|
| 494 | -<td style="text-align:center">2</td> |
|
| 495 | -<td style="text-align:center">★ ★ ★ ★ ☆</td> |
|
| 496 | -<td style="text-align:center"><strong>Pass</strong></td> |
|
| 497 | -</tr> |
|
| 498 | -<tr> |
|
| 499 | -<td style="text-align:left"><a href="../HIST1H4J">HIST1H4J</a></td> |
|
| 500 | -<td style="text-align:center">2</td> |
|
| 501 | -<td style="text-align:center">★ ★ ★ ☆ ☆</td> |
|
| 502 | -<td style="text-align:center"><strong>Pass</strong></td> |
|
| 503 | -</tr> |
|
| 504 | -<tr> |
|
| 505 | -<td style="text-align:left"><a href="../IKZF3">IKZF3</a></td> |
|
| 506 | -<td style="text-align:center">2</td> |
|
| 507 | -<td style="text-align:center">★ ★ ★ ☆ ☆</td> |
|
| 508 | -<td style="text-align:center"><strong>Pass</strong></td> |
|
| 509 | -</tr> |
|
| 510 | -<tr> |
|
| 511 | -<td style="text-align:left"><a href="../ZFP36L1">ZFP36L1</a></td> |
|
| 512 | -<td style="text-align:center">2</td> |
|
| 513 | -<td style="text-align:center">★ ★ ★ ★ ☆</td> |
|
| 514 | -<td style="text-align:center"><strong>Pass</strong></td> |
|
| 515 | -</tr> |
|
| 516 | -<tr> |
|
| 517 | -<td style="text-align:left"><a href="../RNF144B">RNF144B</a></td> |
|
| 518 | -<td style="text-align:center">2</td> |
|
| 519 | -<td style="text-align:center">★ ★ ★ ☆ ☆</td> |
|
| 520 | -<td style="text-align:center"><strong>Pass</strong></td> |
|
| 521 | -</tr> |
|
| 522 | -<tr> |
|
| 523 | -<td style="text-align:left"><a href="../ALPK2">ALPK2</a></td> |
|
| 524 | -<td style="text-align:center">2</td> |
|
| 525 | -<td style="text-align:center">★ ☆ ☆ ☆ ☆</td> |
|
| 526 | -<td style="text-align:center"><strong>Fail</strong></td> |
|
| 527 | -</tr> |
|
| 528 | -<tr> |
|
| 529 | -<td style="text-align:left"><a href="../CD79B">CD79B</a></td> |
|
| 530 | -<td style="text-align:center">2</td> |
|
| 531 | -<td style="text-align:center">★ ★ ☆ ☆ ☆</td> |
|
| 532 | -<td style="text-align:center"><strong>Fail</strong></td> |
|
| 533 | -</tr> |
|
| 534 | -<tr> |
|
| 535 | -<td style="text-align:left"><a href="../CTCF">CTCF</a></td> |
|
| 536 | -<td style="text-align:center">2</td> |
|
| 537 | -<td style="text-align:center">★ ☆ ☆ ☆ ☆</td> |
|
| 538 | -<td style="text-align:center"><strong>Fail</strong></td> |
|
| 539 | -</tr> |
|
| 540 | -<tr> |
|
| 541 | -<td style="text-align:left"><a href="../DNMT1">DNMT1</a></td> |
|
| 542 | -<td style="text-align:center">2</td> |
|
| 543 | -<td style="text-align:center">★ ☆ ☆ ☆ ☆</td> |
|
| 544 | -<td style="text-align:center"><strong>Fail</strong></td> |
|
| 545 | -</tr> |
|
| 546 | -<tr> |
|
| 547 | -<td style="text-align:left"><a href="../DTX1">DTX1</a></td> |
|
| 548 | -<td style="text-align:center">2</td> |
|
| 549 | -<td style="text-align:center">★ ☆ ☆ ☆ ☆</td> |
|
| 550 | -<td style="text-align:center"><strong>Fail</strong></td> |
|
| 551 | -</tr> |
|
| 552 | -<tr> |
|
| 553 | -<td style="text-align:left"><a href="../ETS1">ETS1</a></td> |
|
| 554 | -<td style="text-align:center">2</td> |
|
| 555 | -<td style="text-align:center">★ ☆ ☆ ☆ ☆</td> |
|
| 556 | -<td style="text-align:center"><strong>Fail</strong></td> |
|
| 557 | -</tr> |
|
| 558 | -<tr> |
|
| 559 | -<td style="text-align:left"><a href="../FZD3">FZD3</a></td> |
|
| 560 | -<td style="text-align:center">2</td> |
|
| 561 | -<td style="text-align:center">★ ☆ ☆ ☆ ☆</td> |
|
| 562 | -<td style="text-align:center"><strong>Fail</strong></td> |
|
| 563 | -</tr> |
|
| 564 | -<tr> |
|
| 565 | -<td style="text-align:left"><a href="../HIST1H1C">HIST1H1C</a></td> |
|
| 566 | -<td style="text-align:center">2</td> |
|
| 567 | -<td style="text-align:center">★ ★ ☆ ☆ ☆</td> |
|
| 568 | -<td style="text-align:center"><strong>Fail</strong></td> |
|
| 569 | -</tr> |
|
| 570 | -<tr> |
|
| 571 | -<td style="text-align:left"><a href="../HIST1H2AG">HIST1H2AG</a></td> |
|
| 572 | -<td style="text-align:center">2</td> |
|
| 573 | -<td style="text-align:center">★ ★ ☆ ☆ ☆</td> |
|
| 574 | -<td style="text-align:center"><strong>Fail</strong></td> |
|
| 575 | -</tr> |
|
| 576 | -<tr> |
|
| 577 | -<td style="text-align:left"><a href="../HIST1H2BK">HIST1H2BK</a></td> |
|
| 578 | -<td style="text-align:center">2</td> |
|
| 579 | -<td style="text-align:center">★ ☆ ☆ ☆ ☆</td> |
|
| 580 | -<td style="text-align:center"><strong>Fail</strong></td> |
|
| 581 | -</tr> |
|
| 582 | -<tr> |
|
| 583 | -<td style="text-align:left"><a href="../KCNK10">KCNK10</a></td> |
|
| 584 | -<td style="text-align:center">2</td> |
|
| 585 | -<td style="text-align:center">★ ★ ☆ ☆ ☆</td> |
|
| 586 | -<td style="text-align:center"><strong>Fail</strong></td> |
|
| 587 | -</tr> |
|
| 588 | -<tr> |
|
| 589 | -<td style="text-align:left"><a href="../MME">MME</a></td> |
|
| 590 | -<td style="text-align:center">2</td> |
|
| 591 | -<td style="text-align:center">★ ☆ ☆ ☆ ☆</td> |
|
| 592 | -<td style="text-align:center"><strong>Fail</strong></td> |
|
| 593 | -</tr> |
|
| 594 | -<tr> |
|
| 595 | -<td style="text-align:left"><a href="../MTOR">MTOR</a></td> |
|
| 596 | -<td style="text-align:center">2</td> |
|
| 597 | -<td style="text-align:center">★ ☆ ☆ ☆ ☆</td> |
|
| 598 | -<td style="text-align:center"><strong>Fail</strong></td> |
|
| 599 | -</tr> |
|
| 600 | -<tr> |
|
| 601 | -<td style="text-align:left"><a href="../PABPC4L">PABPC4L</a></td> |
|
| 602 | -<td style="text-align:center">2</td> |
|
| 603 | -<td style="text-align:center">★ ★ ☆ ☆ ☆</td> |
|
| 604 | -<td style="text-align:center"><strong>Fail</strong></td> |
|
| 605 | -</tr> |
|
| 606 | -<tr> |
|
| 607 | -<td style="text-align:left"><a href="../PCDHA11">PCDHA11</a></td> |
|
| 608 | -<td style="text-align:center">2</td> |
|
| 609 | -<td style="text-align:center">★ ☆ ☆ ☆ ☆</td> |
|
| 610 | -<td style="text-align:center"><strong>Fail</strong></td> |
|
| 611 | -</tr> |
|
| 612 | -<tr> |
|
| 613 | -<td style="text-align:left"><a href="../PDZRN3">PDZRN3</a></td> |
|
| 614 | -<td style="text-align:center">2</td> |
|
| 615 | -<td style="text-align:center">★ ☆ ☆ ☆ ☆</td> |
|
| 616 | -<td style="text-align:center"><strong>Fail</strong></td> |
|
| 617 | -</tr> |
|
| 618 | -<tr> |
|
| 619 | -<td style="text-align:left"><a href="../PIK3R1">PIK3R1</a></td> |
|
| 620 | -<td style="text-align:center">2</td> |
|
| 621 | -<td style="text-align:center">★ ☆ ☆ ☆ ☆</td> |
|
| 622 | -<td style="text-align:center"><strong>Fail</strong></td> |
|
| 623 | -</tr> |
|
| 624 | -<tr> |
|
| 625 | -<td style="text-align:left"><a href="../PXDNL">PXDNL</a></td> |
|
| 626 | -<td style="text-align:center">2</td> |
|
| 627 | -<td style="text-align:center">★ ☆ ☆ ☆ ☆</td> |
|
| 628 | -<td style="text-align:center"><strong>Fail</strong></td> |
|
| 629 | -</tr> |
|
| 630 | -<tr> |
|
| 631 | -<td style="text-align:left"><a href="../SNTB2">SNTB2</a></td> |
|
| 632 | -<td style="text-align:center">2</td> |
|
| 633 | -<td style="text-align:center">★ ★ ☆ ☆ ☆</td> |
|
| 634 | -<td style="text-align:center"><strong>Fail</strong></td> |
|
| 635 | -</tr> |
|
| 636 | -<tr> |
|
| 637 | -<td style="text-align:left"><a href="../WDR7">WDR7</a></td> |
|
| 638 | -<td style="text-align:center">2</td> |
|
| 639 | -<td style="text-align:center">★ ★ ☆ ☆ ☆</td> |
|
| 640 | -<td style="text-align:center"><strong>Fail</strong></td> |
|
| 641 | -</tr> |
|
| 642 | -<tr> |
|
| 643 | -<td style="text-align:left"><a href="../HIST1H3H">HIST1H3H</a></td> |
|
| 644 | -<td style="text-align:center">2</td> |
|
| 645 | -<td style="text-align:center">☆ ☆ ☆ ☆ ☆</td> |
|
| 646 | -<td style="text-align:center"><strong>Fail</strong></td> |
|
| 647 | -</tr> |
|
| 648 | -<tr> |
|
| 649 | -<td style="text-align:left"><a href="../HIST1H3J">HIST1H3J</a></td> |
|
| 650 | -<td style="text-align:center">2</td> |
|
| 651 | -<td style="text-align:center">☆ ☆ ☆ ☆ ☆</td> |
|
| 652 | -<td style="text-align:center"><strong>Fail</strong></td> |
|
| 653 | -</tr> |
|
| 654 | -<tr> |
|
| 655 | -<td style="text-align:left"><a href="../HIST1H2AM">HIST1H2AM</a></td> |
|
| 656 | -<td style="text-align:center">2</td> |
|
| 657 | -<td style="text-align:center">☆ ☆ ☆ ☆ ☆</td> |
|
| 658 | -<td style="text-align:center"><strong>Fail</strong></td> |
|
| 659 | -</tr> |
|
| 660 | -</tbody> |
|
| 661 | -</table> |
|
| 662 | -<h1 id="details">Details</h1> |
|
| 663 | -
|
|
| 664 | -</body>
|
|
| 665 | -</html>
|
papers/reddyGeneticFunctionalDrivers2017.md
| ... | ... | @@ -33,7 +33,7 @@ All other DLBCL studies, DLBCL Tier 2, 145 |
| 33 | 33 | ## Novel genes reported in this study |
| 34 | 34 | |
| 35 | 35 | ### Tier 1 |
| 36 | -|New gene|DLBCL tier|Rating of reviewed variants| |
|
| 36 | +|Novel gene|DLBCL tier|Rating of reviewed variants| |
|
| 37 | 37 | |:-|:-:|:-:| |
| 38 | 38 | |[ATM](../ATM)|1 |★ ★ ★ ☆ ☆| |
| 39 | 39 | |[BIRC6](../BIRC6)|1 |★ ★ ★ ☆ ☆| |
| ... | ... | @@ -44,61 +44,61 @@ All other DLBCL studies, DLBCL Tier 2, 145 |
| 44 | 44 | |[UBE2A](../UBE2A)|1 |★ ★ ★ ☆ ☆| |
| 45 | 45 | |
| 46 | 46 | ### Tier 2 |
| 47 | -|New gene|DLBCL tier|Rating of reviewed variants| |
|
| 48 | -|:-|:-:|:-:| |
|
| 49 | -|[ANKRD17](../ANKRD17)|2 |★ ★ ★ ☆ ☆| |
|
| 50 | -|[ARID1B](../ARID1B)|2 |★ ★ ☆ ☆ ☆| |
|
| 51 | -|[ARID5B](../ARID5B)|2 |★ ★ ★ ★ ☆| |
|
| 52 | -|[ATR](../ATR)|2 |★ ★ ★ ☆ ☆| |
|
| 53 | -|[BRINP3](../BRINP3)|2 |★ ★ ★ ☆ ☆| |
|
| 54 | -|[BTBD3](../BTBD3)|2 |★ ★ ★ ★ ☆| |
|
| 55 | -|[CASP8](../CASP8)|2 |★ ★ ★ ☆ ☆| |
|
| 56 | -|[CBLB](../CBLB)|2 |★ ★ ☆ ☆ ☆| |
|
| 57 | -|[CD22](../CD22)|2 |★ ★ ★ ☆ ☆| |
|
| 58 | -|[CDC73](../CDC73)|2 |★ ★ ☆ ☆ ☆| |
|
| 59 | -|[CHD1](../CHD1)|2 |★ ★ ☆ ☆ ☆| |
|
| 60 | -|[CHD8](../CHD8)|2 |★ ★ ☆ ☆ ☆| |
|
| 61 | -|[CHST2](../CHST2)|2 |★ ★ ☆ ☆ ☆| |
|
| 62 | -|[DCAF6](../DCAF6)|2 |★ ★ ☆ ☆ ☆| |
|
| 63 | -|[DDX10](../DDX10)|2 |★ ★ ☆ ☆ ☆| |
|
| 64 | -|[DICER1](../DICER1)|2 |★ ★ ☆ ☆ ☆| |
|
| 65 | -|[DNMT3A](../DNMT3A)|2 |★ ☆ ☆ ☆ ☆| |
|
| 66 | -|[FOXP1](../FOXP1)|2 |★ ★ ★ ☆ ☆| |
|
| 67 | -|[FUBP1](../FUBP1)|2 |★ ★ ★ ☆ ☆| |
|
| 68 | -|[GNAS](../GNAS)|2 |★ ★ ☆ ☆ ☆| |
|
| 69 | -|[GOLGA5](../GOLGA5)|2 |★ ★ ★ ☆ ☆| |
|
| 70 | -|[HRAS](../HRAS)|2 |★ ★ ☆ ☆ ☆| |
|
| 71 | -|[IKBKB](../IKBKB)|2 |★ ★ ★ ☆ ☆| |
|
| 72 | -|[JUNB](../JUNB)|2 |★ ★ ★ ☆ ☆| |
|
| 73 | -|[KCMF1](../KCMF1)|2 |★ ★ ★ ☆ ☆| |
|
| 74 | -|[LIN54](../LIN54)|2 |★ ★ ☆ ☆ ☆| |
|
| 75 | -|[MAGT1](../MAGT1)|2 |★ ★ ★ ☆ ☆| |
|
| 76 | -|[MAP4K4](../MAP4K4)|2 |★ ★ ☆ ☆ ☆| |
|
| 77 | -|[MARK1](../MARK1)|2 |★ ☆ ☆ ☆ ☆| |
|
| 78 | -|[MCL1](../MCL1)|2 |★ ★ ☆ ☆ ☆| |
|
| 79 | -|[MECOM](../MECOM)|2 |★ ★ ★ ☆ ☆| |
|
| 80 | -|[MET](../MET)|2 |★ ★ ★ ☆ ☆| |
|
| 81 | -|[MSH2](../MSH2)|2 |★ ★ ☆ ☆ ☆| |
|
| 82 | -|[MSH6](../MSH6)|2 |★ ★ ★ ☆ ☆| |
|
| 83 | -|[MYB](../MYB)|2 |★ ★ ☆ ☆ ☆| |
|
| 84 | -|[NCOR1](../NCOR1)|2 |★ ★ ☆ ☆ ☆| |
|
| 85 | -|[NF1](../NF1)|2 |★ ★ ★ ☆ ☆| |
|
| 86 | -|[NFKB2](../NFKB2)|2 |★ ★ ☆ ☆ ☆| |
|
| 87 | -|[PHF6](../PHF6)|2 |★ ★ ☆ ☆ ☆| |
|
| 88 | -|[PIK3CD](../PIK3CD)|2 |★ ★ ☆ ☆ ☆| |
|
| 89 | -|[PTPN6](../PTPN6)|2 |★ ★ ★ ☆ ☆| |
|
| 90 | -|[PTPRK](../PTPRK)|2 |★ ★ ☆ ☆ ☆| |
|
| 91 | -|[RARA](../RARA)|2 |★ ☆ ☆ ☆ ☆| |
|
| 92 | -|[RUNX1](../RUNX1)|2 |★ ★ ☆ ☆ ☆| |
|
| 93 | -|[SETD5](../SETD5)|2 |★ ★ ★ ☆ ☆| |
|
| 94 | -|[SYK](../SYK)|2 |★ ★ ☆ ☆ ☆| |
|
| 95 | -|[TGFBR2](../TGFBR2)|2 |★ ★ ★ ☆ ☆| |
|
| 96 | -|[TIPARP](../TIPARP)|2 |★ ★ ★ ☆ ☆| |
|
| 97 | -|[WAC](../WAC)|2 |★ ★ ☆ ☆ ☆| |
|
| 98 | -|[YY1](../YY1)|2 |★ ★ ★ ☆ ☆| |
|
| 99 | -|[ZBTB7A](../ZBTB7A)|2 |★ ☆ ☆ ☆ ☆| |
|
| 100 | -|[ZFAT](../ZFAT)|2 |★ ★ ☆ ☆ ☆| |
|
| 101 | -|[ZFX](../ZFX)|2 |★ ★ ★ ☆ ☆| |
|
| 47 | +|Novel gene|DLBCL tier|Average variant quality|QC outcome| |
|
| 48 | +|:-|:-:|:-:|:-:| |
|
| 49 | +|[ANKRD17](../ANKRD17)|2 |★ ★ ★ ☆ ☆|**Pass**| |
|
| 50 | +|[ARID1B](../ARID1B)|2 |★ ★ ☆ ☆ ☆|**Fail**| |
|
| 51 | +|[ARID5B](../ARID5B)|2 |★ ★ ★ ★ ☆|**Pass**| |
|
| 52 | +|[ATR](../ATR)|2 |★ ★ ★ ☆ ☆|**Pass**| |
|
| 53 | +|[BRINP3](../BRINP3)|2 |★ ★ ★ ☆ ☆|**Pass**| |
|
| 54 | +|[BTBD3](../BTBD3)|2 |★ ★ ★ ★ ☆|**Pass**| |
|
| 55 | +|[CASP8](../CASP8)|2 |★ ★ ★ ☆ ☆|**Pass**| |
|
| 56 | +|[CBLB](../CBLB)|2 |★ ★ ☆ ☆ ☆|**Fail**| |
|
| 57 | +|[CD22](../CD22)|2 |★ ★ ★ ☆ ☆|**Pass**| |
|
| 58 | +|[CDC73](../CDC73)|2 |★ ★ ☆ ☆ ☆|**Fail**| |
|
| 59 | +|[CHD1](../CHD1)|2 |★ ★ ☆ ☆ ☆|**Fail**| |
|
| 60 | +|[CHD8](../CHD8)|2 |★ ★ ☆ ☆ ☆|**Fail**| |
|
| 61 | +|[CHST2](../CHST2)|2 |★ ★ ☆ ☆ ☆|**Fail**| |
|
| 62 | +|[DCAF6](../DCAF6)|2 |★ ★ ☆ ☆ ☆|**Fail**| |
|
| 63 | +|[DDX10](../DDX10)|2 |★ ★ ☆ ☆ ☆|**Fail**| |
|
| 64 | +|[DICER1](../DICER1)|2 |★ ★ ☆ ☆ ☆|**Fail**| |
|
| 65 | +|[DNMT3A](../DNMT3A)|2 |★ ☆ ☆ ☆ ☆|**Fail**| |
|
| 66 | +|[FOXP1](../FOXP1)|2 |★ ★ ★ ☆ ☆|**Pass**| |
|
| 67 | +|[FUBP1](../FUBP1)|2 |★ ★ ★ ☆ ☆|**Pass**| |
|
| 68 | +|[GNAS](../GNAS)|2 |★ ★ ☆ ☆ ☆|**Fail**| |
|
| 69 | +|[GOLGA5](../GOLGA5)|2 |★ ★ ★ ☆ ☆|**Pass**| |
|
| 70 | +|[HRAS](../HRAS)|2 |★ ★ ☆ ☆ ☆|**Fail**| |
|
| 71 | +|[IKBKB](../IKBKB)|2 |★ ★ ★ ☆ ☆|**Pass**| |
|
| 72 | +|[JUNB](../JUNB)|2 |★ ★ ★ ☆ ☆|**Pass**| |
|
| 73 | +|[KCMF1](../KCMF1)|2 |★ ★ ★ ☆ ☆|**Pass**| |
|
| 74 | +|[LIN54](../LIN54)|2 |★ ★ ☆ ☆ ☆|**Fail**| |
|
| 75 | +|[MAGT1](../MAGT1)|2 |★ ★ ★ ☆ ☆|**Pass**| |
|
| 76 | +|[MAP4K4](../MAP4K4)|2 |★ ★ ☆ ☆ ☆|**Fail**| |
|
| 77 | +|[MARK1](../MARK1)|2 |★ ☆ ☆ ☆ ☆|**Fail**| |
|
| 78 | +|[MCL1](../MCL1)|2 |★ ★ ☆ ☆ ☆|**Fail**| |
|
| 79 | +|[MECOM](../MECOM)|2 |★ ★ ★ ☆ ☆|**Pass**| |
|
| 80 | +|[MET](../MET)|2 |★ ★ ★ ☆ ☆|**Pass**| |
|
| 81 | +|[MSH2](../MSH2)|2 |★ ★ ☆ ☆ ☆|**Fail**| |
|
| 82 | +|[MSH6](../MSH6)|2 |★ ★ ★ ☆ ☆|**Pass**| |
|
| 83 | +|[MYB](../MYB)|2 |★ ★ ☆ ☆ ☆|**Fail**| |
|
| 84 | +|[NCOR1](../NCOR1)|2 |★ ★ ☆ ☆ ☆|**Fail**| |
|
| 85 | +|[NF1](../NF1)|2 |★ ★ ★ ☆ ☆|**Pass**| |
|
| 86 | +|[NFKB2](../NFKB2)|2 |★ ★ ☆ ☆ ☆|**Fail**| |
|
| 87 | +|[PHF6](../PHF6)|2 |★ ★ ☆ ☆ ☆|**Fail**| |
|
| 88 | +|[PIK3CD](../PIK3CD)|2 |★ ★ ☆ ☆ ☆|**Fail**| |
|
| 89 | +|[PTPN6](../PTPN6)|2 |★ ★ ★ ☆ ☆|**Pass**| |
|
| 90 | +|[PTPRK](../PTPRK)|2 |★ ★ ☆ ☆ ☆|**Fail**| |
|
| 91 | +|[RARA](../RARA)|2 |★ ☆ ☆ ☆ ☆|**Fail**| |
|
| 92 | +|[RUNX1](../RUNX1)|2 |★ ★ ☆ ☆ ☆|**Fail**| |
|
| 93 | +|[SETD5](../SETD5)|2 |★ ★ ★ ☆ ☆|**Pass**| |
|
| 94 | +|[SYK](../SYK)|2 |★ ★ ☆ ☆ ☆|**Fail**| |
|
| 95 | +|[TGFBR2](../TGFBR2)|2 |★ ★ ★ ☆ ☆|**Pass**| |
|
| 96 | +|[TIPARP](../TIPARP)|2 |★ ★ ★ ☆ ☆|**Pass**| |
|
| 97 | +|[WAC](../WAC)|2 |★ ★ ☆ ☆ ☆|**Fail**| |
|
| 98 | +|[YY1](../YY1)|2 |★ ★ ★ ☆ ☆|**Pass**| |
|
| 99 | +|[ZBTB7A](../ZBTB7A)|2 |★ ☆ ☆ ☆ ☆|**Fail**| |
|
| 100 | +|[ZFAT](../ZFAT)|2 |★ ★ ☆ ☆ ☆|**Fail**| |
|
| 101 | +|[ZFX](../ZFX)|2 |★ ★ ★ ☆ ☆|**Pass**| |
|
| 102 | 102 | |
| 103 | 103 | ## See Also |
| 104 | 104 |
papers/reddyGeneticFunctionalDrivers2017_tmp.html
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|
|
| 340 | + line-height: 19px;
|
|
| 341 | +}
|
|
| 342 | +
|
|
| 343 | +/* for inline code */
|
|
| 344 | +:not(pre):not(.hljs) > code {
|
|
| 345 | + color: #C9AE75; /* Change the old color so it seems less like an error */
|
|
| 346 | + font-size: inherit;
|
|
| 347 | +}
|
|
| 348 | +
|
|
| 349 | +/* Page Break : use <div class="page"/> to insert page break
|
|
| 350 | +-------------------------------------------------------- */
|
|
| 351 | +.page {
|
|
| 352 | + page-break-after: always;
|
|
| 353 | +}
|
|
| 354 | + |
|
| 355 | +</style> |
|
| 356 | +
|
|
| 357 | +<script src="https://unpkg.com/mermaid/dist/mermaid.min.js"></script>
|
|
| 358 | +</head>
|
|
| 359 | +<body>
|
|
| 360 | + <script>
|
|
| 361 | + mermaid.initialize({
|
|
| 362 | + startOnLoad: true,
|
|
| 363 | + theme: document.body.classList.contains('vscode-dark') || document.body.classList.contains('vscode-high-contrast')
|
|
| 364 | + ? 'dark'
|
|
| 365 | + : 'default'
|
|
| 366 | + });
|
|
| 367 | + </script>
|
|
| 368 | +<h1 id="reddygeneticfunctionaldrivers2017">@reddyGeneticFunctionalDrivers2017</h1> |
|
| 369 | +<h2 id="summary-of-novel-genes">Summary of novel genes</h2> |
|
| 370 | +<table> |
|
| 371 | +<thead> |
|
| 372 | +<tr> |
|
| 373 | +<th style="text-align:center">Entity</th> |
|
| 374 | +<th style="text-align:center">Tier 1 genes</th> |
|
| 375 | +<th style="text-align:center">Tier 2 genes</th> |
|
| 376 | +</tr> |
|
| 377 | +</thead> |
|
| 378 | +<tbody> |
|
| 379 | +<tr> |
|
| 380 | +<td style="text-align:center">DLBCL</td> |
|
| 381 | +<td style="text-align:center">7</td> |
|
| 382 | +<td style="text-align:center">53</td> |
|
| 383 | +</tr> |
|
| 384 | +</tbody> |
|
| 385 | +</table> |
|
| 386 | +<pre><code class="language-mermaid"><div class="mermaid">--- |
|
| 387 | +config: |
|
| 388 | + sankey: |
|
| 389 | + showValues: true |
|
| 390 | + linkColor: target |
|
| 391 | + width: 600 |
|
| 392 | + height: 300 |
|
| 393 | + nodeAlignment: right |
|
| 394 | + prefix: '(' |
|
| 395 | + suffix: ' genes)' |
|
| 396 | +--- |
|
| 397 | +sankey-beta |
|
| 398 | +This study, New Tier 1, 7 |
|
| 399 | +New Tier 1, DLBCL Tier 1, 7 |
|
| 400 | +This study, New Tier 2, 53 |
|
| 401 | +New Tier 2, DLBCL Tier 2, 53 |
|
| 402 | +All other DLBCL studies, DLBCL Tier 1, 121 |
|
| 403 | +All other DLBCL studies, DLBCL Tier 2, 145 |
|
| 404 | +</div></code></pre> |
|
| 405 | +<h2 id="novel-genes-reported-in-this-study">Novel genes reported in this study</h2> |
|
| 406 | +<h3 id="tier-1">Tier 1</h3> |
|
| 407 | +<table> |
|
| 408 | +<thead> |
|
| 409 | +<tr> |
|
| 410 | +<th style="text-align:left">Novel gene</th> |
|
| 411 | +<th style="text-align:center">DLBCL tier</th> |
|
| 412 | +<th style="text-align:center">Rating of reviewed variants</th> |
|
| 413 | +</tr> |
|
| 414 | +</thead> |
|
| 415 | +<tbody> |
|
| 416 | +<tr> |
|
| 417 | +<td style="text-align:left"><a href="../ATM">ATM</a></td> |
|
| 418 | +<td style="text-align:center">1</td> |
|
| 419 | +<td style="text-align:center">★ ★ ★ ☆ ☆</td> |
|
| 420 | +</tr> |
|
| 421 | +<tr> |
|
| 422 | +<td style="text-align:left"><a href="../BIRC6">BIRC6</a></td> |
|
| 423 | +<td style="text-align:center">1</td> |
|
| 424 | +<td style="text-align:center">★ ★ ★ ☆ ☆</td> |
|
| 425 | +</tr> |
|
| 426 | +<tr> |
|
| 427 | +<td style="text-align:left"><a href="../HIST1H2BC">HIST1H2BC</a></td> |
|
| 428 | +<td style="text-align:center">1</td> |
|
| 429 | +<td style="text-align:center">★ ★ ★ ★ ☆</td> |
|
| 430 | +</tr> |
|
| 431 | +<tr> |
|
| 432 | +<td style="text-align:left"><a href="../HNRNPU">HNRNPU</a></td> |
|
| 433 | +<td style="text-align:center">1</td> |
|
| 434 | +<td style="text-align:center">★ ★ ★ ☆ ☆</td> |
|
| 435 | +</tr> |
|
| 436 | +<tr> |
|
| 437 | +<td style="text-align:left"><a href="../SETD1B">SETD1B</a></td> |
|
| 438 | +<td style="text-align:center">1</td> |
|
| 439 | +<td style="text-align:center">★ ★ ☆ ☆ ☆</td> |
|
| 440 | +</tr> |
|
| 441 | +<tr> |
|
| 442 | +<td style="text-align:left"><a href="../TOX">TOX</a></td> |
|
| 443 | +<td style="text-align:center">1</td> |
|
| 444 | +<td style="text-align:center">★ ★ ★ ☆ ☆</td> |
|
| 445 | +</tr> |
|
| 446 | +<tr> |
|
| 447 | +<td style="text-align:left"><a href="../UBE2A">UBE2A</a></td> |
|
| 448 | +<td style="text-align:center">1</td> |
|
| 449 | +<td style="text-align:center">★ ★ ★ ☆ ☆</td> |
|
| 450 | +</tr> |
|
| 451 | +</tbody> |
|
| 452 | +</table> |
|
| 453 | +<h3 id="tier-2">Tier 2</h3> |
|
| 454 | +<table> |
|
| 455 | +<thead> |
|
| 456 | +<tr> |
|
| 457 | +<th style="text-align:left">Novel gene</th> |
|
| 458 | +<th style="text-align:center">DLBCL tier</th> |
|
| 459 | +<th style="text-align:center">Average variant quality</th> |
|
| 460 | +<th style="text-align:center">QC outcome</th> |
|
| 461 | +</tr> |
|
| 462 | +</thead> |
|
| 463 | +<tbody> |
|
| 464 | +<tr> |
|
| 465 | +<td style="text-align:left"><a href="../ANKRD17">ANKRD17</a></td> |
|
| 466 | +<td style="text-align:center">2</td> |
|
| 467 | +<td style="text-align:center">★ ★ ★ ☆ ☆</td> |
|
| 468 | +<td style="text-align:center"><strong>Pass</strong></td> |
|
| 469 | +</tr> |
|
| 470 | +<tr> |
|
| 471 | +<td style="text-align:left"><a href="../ARID1B">ARID1B</a></td> |
|
| 472 | +<td style="text-align:center">2</td> |
|
| 473 | +<td style="text-align:center">★ ★ ☆ ☆ ☆</td> |
|
| 474 | +<td style="text-align:center"><strong>Fail</strong></td> |
|
| 475 | +</tr> |
|
| 476 | +<tr> |
|
| 477 | +<td style="text-align:left"><a href="../ARID5B">ARID5B</a></td> |
|
| 478 | +<td style="text-align:center">2</td> |
|
| 479 | +<td style="text-align:center">★ ★ ★ ★ ☆</td> |
|
| 480 | +<td style="text-align:center"><strong>Pass</strong></td> |
|
| 481 | +</tr> |
|
| 482 | +<tr> |
|
| 483 | +<td style="text-align:left"><a href="../ATR">ATR</a></td> |
|
| 484 | +<td style="text-align:center">2</td> |
|
| 485 | +<td style="text-align:center">★ ★ ★ ☆ ☆</td> |
|
| 486 | +<td style="text-align:center"><strong>Pass</strong></td> |
|
| 487 | +</tr> |
|
| 488 | +<tr> |
|
| 489 | +<td style="text-align:left"><a href="../BRINP3">BRINP3</a></td> |
|
| 490 | +<td style="text-align:center">2</td> |
|
| 491 | +<td style="text-align:center">★ ★ ★ ☆ ☆</td> |
|
| 492 | +<td style="text-align:center"><strong>Pass</strong></td> |
|
| 493 | +</tr> |
|
| 494 | +<tr> |
|
| 495 | +<td style="text-align:left"><a href="../BTBD3">BTBD3</a></td> |
|
| 496 | +<td style="text-align:center">2</td> |
|
| 497 | +<td style="text-align:center">★ ★ ★ ★ ☆</td> |
|
| 498 | +<td style="text-align:center"><strong>Pass</strong></td> |
|
| 499 | +</tr> |
|
| 500 | +<tr> |
|
| 501 | +<td style="text-align:left"><a href="../CASP8">CASP8</a></td> |
|
| 502 | +<td style="text-align:center">2</td> |
|
| 503 | +<td style="text-align:center">★ ★ ★ ☆ ☆</td> |
|
| 504 | +<td style="text-align:center"><strong>Pass</strong></td> |
|
| 505 | +</tr> |
|
| 506 | +<tr> |
|
| 507 | +<td style="text-align:left"><a href="../CBLB">CBLB</a></td> |
|
| 508 | +<td style="text-align:center">2</td> |
|
| 509 | +<td style="text-align:center">★ ★ ☆ ☆ ☆</td> |
|
| 510 | +<td style="text-align:center"><strong>Fail</strong></td> |
|
| 511 | +</tr> |
|
| 512 | +<tr> |
|
| 513 | +<td style="text-align:left"><a href="../CD22">CD22</a></td> |
|
| 514 | +<td style="text-align:center">2</td> |
|
| 515 | +<td style="text-align:center">★ ★ ★ ☆ ☆</td> |
|
| 516 | +<td style="text-align:center"><strong>Pass</strong></td> |
|
| 517 | +</tr> |
|
| 518 | +<tr> |
|
| 519 | +<td style="text-align:left"><a href="../CDC73">CDC73</a></td> |
|
| 520 | +<td style="text-align:center">2</td> |
|
| 521 | +<td style="text-align:center">★ ★ ☆ ☆ ☆</td> |
|
| 522 | +<td style="text-align:center"><strong>Fail</strong></td> |
|
| 523 | +</tr> |
|
| 524 | +<tr> |
|
| 525 | +<td style="text-align:left"><a href="../CHD1">CHD1</a></td> |
|
| 526 | +<td style="text-align:center">2</td> |
|
| 527 | +<td style="text-align:center">★ ★ ☆ ☆ ☆</td> |
|
| 528 | +<td style="text-align:center"><strong>Fail</strong></td> |
|
| 529 | +</tr> |
|
| 530 | +<tr> |
|
| 531 | +<td style="text-align:left"><a href="../CHD8">CHD8</a></td> |
|
| 532 | +<td style="text-align:center">2</td> |
|
| 533 | +<td style="text-align:center">★ ★ ☆ ☆ ☆</td> |
|
| 534 | +<td style="text-align:center"><strong>Fail</strong></td> |
|
| 535 | +</tr> |
|
| 536 | +<tr> |
|
| 537 | +<td style="text-align:left"><a href="../CHST2">CHST2</a></td> |
|
| 538 | +<td style="text-align:center">2</td> |
|
| 539 | +<td style="text-align:center">★ ★ ☆ ☆ ☆</td> |
|
| 540 | +<td style="text-align:center"><strong>Fail</strong></td> |
|
| 541 | +</tr> |
|
| 542 | +<tr> |
|
| 543 | +<td style="text-align:left"><a href="../DCAF6">DCAF6</a></td> |
|
| 544 | +<td style="text-align:center">2</td> |
|
| 545 | +<td style="text-align:center">★ ★ ☆ ☆ ☆</td> |
|
| 546 | +<td style="text-align:center"><strong>Fail</strong></td> |
|
| 547 | +</tr> |
|
| 548 | +<tr> |
|
| 549 | +<td style="text-align:left"><a href="../DDX10">DDX10</a></td> |
|
| 550 | +<td style="text-align:center">2</td> |
|
| 551 | +<td style="text-align:center">★ ★ ☆ ☆ ☆</td> |
|
| 552 | +<td style="text-align:center"><strong>Fail</strong></td> |
|
| 553 | +</tr> |
|
| 554 | +<tr> |
|
| 555 | +<td style="text-align:left"><a href="../DICER1">DICER1</a></td> |
|
| 556 | +<td style="text-align:center">2</td> |
|
| 557 | +<td style="text-align:center">★ ★ ☆ ☆ ☆</td> |
|
| 558 | +<td style="text-align:center"><strong>Fail</strong></td> |
|
| 559 | +</tr> |
|
| 560 | +<tr> |
|
| 561 | +<td style="text-align:left"><a href="../DNMT3A">DNMT3A</a></td> |
|
| 562 | +<td style="text-align:center">2</td> |
|
| 563 | +<td style="text-align:center">★ ☆ ☆ ☆ ☆</td> |
|
| 564 | +<td style="text-align:center"><strong>Fail</strong></td> |
|
| 565 | +</tr> |
|
| 566 | +<tr> |
|
| 567 | +<td style="text-align:left"><a href="../FOXP1">FOXP1</a></td> |
|
| 568 | +<td style="text-align:center">2</td> |
|
| 569 | +<td style="text-align:center">★ ★ ★ ☆ ☆</td> |
|
| 570 | +<td style="text-align:center"><strong>Pass</strong></td> |
|
| 571 | +</tr> |
|
| 572 | +<tr> |
|
| 573 | +<td style="text-align:left"><a href="../FUBP1">FUBP1</a></td> |
|
| 574 | +<td style="text-align:center">2</td> |
|
| 575 | +<td style="text-align:center">★ ★ ★ ☆ ☆</td> |
|
| 576 | +<td style="text-align:center"><strong>Pass</strong></td> |
|
| 577 | +</tr> |
|
| 578 | +<tr> |
|
| 579 | +<td style="text-align:left"><a href="../GNAS">GNAS</a></td> |
|
| 580 | +<td style="text-align:center">2</td> |
|
| 581 | +<td style="text-align:center">★ ★ ☆ ☆ ☆</td> |
|
| 582 | +<td style="text-align:center"><strong>Fail</strong></td> |
|
| 583 | +</tr> |
|
| 584 | +<tr> |
|
| 585 | +<td style="text-align:left"><a href="../GOLGA5">GOLGA5</a></td> |
|
| 586 | +<td style="text-align:center">2</td> |
|
| 587 | +<td style="text-align:center">★ ★ ★ ☆ ☆</td> |
|
| 588 | +<td style="text-align:center"><strong>Pass</strong></td> |
|
| 589 | +</tr> |
|
| 590 | +<tr> |
|
| 591 | +<td style="text-align:left"><a href="../HRAS">HRAS</a></td> |
|
| 592 | +<td style="text-align:center">2</td> |
|
| 593 | +<td style="text-align:center">★ ★ ☆ ☆ ☆</td> |
|
| 594 | +<td style="text-align:center"><strong>Fail</strong></td> |
|
| 595 | +</tr> |
|
| 596 | +<tr> |
|
| 597 | +<td style="text-align:left"><a href="../IKBKB">IKBKB</a></td> |
|
| 598 | +<td style="text-align:center">2</td> |
|
| 599 | +<td style="text-align:center">★ ★ ★ ☆ ☆</td> |
|
| 600 | +<td style="text-align:center"><strong>Pass</strong></td> |
|
| 601 | +</tr> |
|
| 602 | +<tr> |
|
| 603 | +<td style="text-align:left"><a href="../JUNB">JUNB</a></td> |
|
| 604 | +<td style="text-align:center">2</td> |
|
| 605 | +<td style="text-align:center">★ ★ ★ ☆ ☆</td> |
|
| 606 | +<td style="text-align:center"><strong>Pass</strong></td> |
|
| 607 | +</tr> |
|
| 608 | +<tr> |
|
| 609 | +<td style="text-align:left"><a href="../KCMF1">KCMF1</a></td> |
|
| 610 | +<td style="text-align:center">2</td> |
|
| 611 | +<td style="text-align:center">★ ★ ★ ☆ ☆</td> |
|
| 612 | +<td style="text-align:center"><strong>Pass</strong></td> |
|
| 613 | +</tr> |
|
| 614 | +<tr> |
|
| 615 | +<td style="text-align:left"><a href="../LIN54">LIN54</a></td> |
|
| 616 | +<td style="text-align:center">2</td> |
|
| 617 | +<td style="text-align:center">★ ★ ☆ ☆ ☆</td> |
|
| 618 | +<td style="text-align:center"><strong>Fail</strong></td> |
|
| 619 | +</tr> |
|
| 620 | +<tr> |
|
| 621 | +<td style="text-align:left"><a href="../MAGT1">MAGT1</a></td> |
|
| 622 | +<td style="text-align:center">2</td> |
|
| 623 | +<td style="text-align:center">★ ★ ★ ☆ ☆</td> |
|
| 624 | +<td style="text-align:center"><strong>Pass</strong></td> |
|
| 625 | +</tr> |
|
| 626 | +<tr> |
|
| 627 | +<td style="text-align:left"><a href="../MAP4K4">MAP4K4</a></td> |
|
| 628 | +<td style="text-align:center">2</td> |
|
| 629 | +<td style="text-align:center">★ ★ ☆ ☆ ☆</td> |
|
| 630 | +<td style="text-align:center"><strong>Fail</strong></td> |
|
| 631 | +</tr> |
|
| 632 | +<tr> |
|
| 633 | +<td style="text-align:left"><a href="../MARK1">MARK1</a></td> |
|
| 634 | +<td style="text-align:center">2</td> |
|
| 635 | +<td style="text-align:center">★ ☆ ☆ ☆ ☆</td> |
|
| 636 | +<td style="text-align:center"><strong>Fail</strong></td> |
|
| 637 | +</tr> |
|
| 638 | +<tr> |
|
| 639 | +<td style="text-align:left"><a href="../MCL1">MCL1</a></td> |
|
| 640 | +<td style="text-align:center">2</td> |
|
| 641 | +<td style="text-align:center">★ ★ ☆ ☆ ☆</td> |
|
| 642 | +<td style="text-align:center"><strong>Fail</strong></td> |
|
| 643 | +</tr> |
|
| 644 | +<tr> |
|
| 645 | +<td style="text-align:left"><a href="../MECOM">MECOM</a></td> |
|
| 646 | +<td style="text-align:center">2</td> |
|
| 647 | +<td style="text-align:center">★ ★ ★ ☆ ☆</td> |
|
| 648 | +<td style="text-align:center"><strong>Pass</strong></td> |
|
| 649 | +</tr> |
|
| 650 | +<tr> |
|
| 651 | +<td style="text-align:left"><a href="../MET">MET</a></td> |
|
| 652 | +<td style="text-align:center">2</td> |
|
| 653 | +<td style="text-align:center">★ ★ ★ ☆ ☆</td> |
|
| 654 | +<td style="text-align:center"><strong>Pass</strong></td> |
|
| 655 | +</tr> |
|
| 656 | +<tr> |
|
| 657 | +<td style="text-align:left"><a href="../MSH2">MSH2</a></td> |
|
| 658 | +<td style="text-align:center">2</td> |
|
| 659 | +<td style="text-align:center">★ ★ ☆ ☆ ☆</td> |
|
| 660 | +<td style="text-align:center"><strong>Fail</strong></td> |
|
| 661 | +</tr> |
|
| 662 | +<tr> |
|
| 663 | +<td style="text-align:left"><a href="../MSH6">MSH6</a></td> |
|
| 664 | +<td style="text-align:center">2</td> |
|
| 665 | +<td style="text-align:center">★ ★ ★ ☆ ☆</td> |
|
| 666 | +<td style="text-align:center"><strong>Pass</strong></td> |
|
| 667 | +</tr> |
|
| 668 | +<tr> |
|
| 669 | +<td style="text-align:left"><a href="../MYB">MYB</a></td> |
|
| 670 | +<td style="text-align:center">2</td> |
|
| 671 | +<td style="text-align:center">★ ★ ☆ ☆ ☆</td> |
|
| 672 | +<td style="text-align:center"><strong>Fail</strong></td> |
|
| 673 | +</tr> |
|
| 674 | +<tr> |
|
| 675 | +<td style="text-align:left"><a href="../NCOR1">NCOR1</a></td> |
|
| 676 | +<td style="text-align:center">2</td> |
|
| 677 | +<td style="text-align:center">★ ★ ☆ ☆ ☆</td> |
|
| 678 | +<td style="text-align:center"><strong>Fail</strong></td> |
|
| 679 | +</tr> |
|
| 680 | +<tr> |
|
| 681 | +<td style="text-align:left"><a href="../NF1">NF1</a></td> |
|
| 682 | +<td style="text-align:center">2</td> |
|
| 683 | +<td style="text-align:center">★ ★ ★ ☆ ☆</td> |
|
| 684 | +<td style="text-align:center"><strong>Pass</strong></td> |
|
| 685 | +</tr> |
|
| 686 | +<tr> |
|
| 687 | +<td style="text-align:left"><a href="../NFKB2">NFKB2</a></td> |
|
| 688 | +<td style="text-align:center">2</td> |
|
| 689 | +<td style="text-align:center">★ ★ ☆ ☆ ☆</td> |
|
| 690 | +<td style="text-align:center"><strong>Fail</strong></td> |
|
| 691 | +</tr> |
|
| 692 | +<tr> |
|
| 693 | +<td style="text-align:left"><a href="../PHF6">PHF6</a></td> |
|
| 694 | +<td style="text-align:center">2</td> |
|
| 695 | +<td style="text-align:center">★ ★ ☆ ☆ ☆</td> |
|
| 696 | +<td style="text-align:center"><strong>Fail</strong></td> |
|
| 697 | +</tr> |
|
| 698 | +<tr> |
|
| 699 | +<td style="text-align:left"><a href="../PIK3CD">PIK3CD</a></td> |
|
| 700 | +<td style="text-align:center">2</td> |
|
| 701 | +<td style="text-align:center">★ ★ ☆ ☆ ☆</td> |
|
| 702 | +<td style="text-align:center"><strong>Fail</strong></td> |
|
| 703 | +</tr> |
|
| 704 | +<tr> |
|
| 705 | +<td style="text-align:left"><a href="../PTPN6">PTPN6</a></td> |
|
| 706 | +<td style="text-align:center">2</td> |
|
| 707 | +<td style="text-align:center">★ ★ ★ ☆ ☆</td> |
|
| 708 | +<td style="text-align:center"><strong>Pass</strong></td> |
|
| 709 | +</tr> |
|
| 710 | +<tr> |
|
| 711 | +<td style="text-align:left"><a href="../PTPRK">PTPRK</a></td> |
|
| 712 | +<td style="text-align:center">2</td> |
|
| 713 | +<td style="text-align:center">★ ★ ☆ ☆ ☆</td> |
|
| 714 | +<td style="text-align:center"><strong>Fail</strong></td> |
|
| 715 | +</tr> |
|
| 716 | +<tr> |
|
| 717 | +<td style="text-align:left"><a href="../RARA">RARA</a></td> |
|
| 718 | +<td style="text-align:center">2</td> |
|
| 719 | +<td style="text-align:center">★ ☆ ☆ ☆ ☆</td> |
|
| 720 | +<td style="text-align:center"><strong>Fail</strong></td> |
|
| 721 | +</tr> |
|
| 722 | +<tr> |
|
| 723 | +<td style="text-align:left"><a href="../RUNX1">RUNX1</a></td> |
|
| 724 | +<td style="text-align:center">2</td> |
|
| 725 | +<td style="text-align:center">★ ★ ☆ ☆ ☆</td> |
|
| 726 | +<td style="text-align:center"><strong>Fail</strong></td> |
|
| 727 | +</tr> |
|
| 728 | +<tr> |
|
| 729 | +<td style="text-align:left"><a href="../SETD5">SETD5</a></td> |
|
| 730 | +<td style="text-align:center">2</td> |
|
| 731 | +<td style="text-align:center">★ ★ ★ ☆ ☆</td> |
|
| 732 | +<td style="text-align:center"><strong>Pass</strong></td> |
|
| 733 | +</tr> |
|
| 734 | +<tr> |
|
| 735 | +<td style="text-align:left"><a href="../SYK">SYK</a></td> |
|
| 736 | +<td style="text-align:center">2</td> |
|
| 737 | +<td style="text-align:center">★ ★ ☆ ☆ ☆</td> |
|
| 738 | +<td style="text-align:center"><strong>Fail</strong></td> |
|
| 739 | +</tr> |
|
| 740 | +<tr> |
|
| 741 | +<td style="text-align:left"><a href="../TGFBR2">TGFBR2</a></td> |
|
| 742 | +<td style="text-align:center">2</td> |
|
| 743 | +<td style="text-align:center">★ ★ ★ ☆ ☆</td> |
|
| 744 | +<td style="text-align:center"><strong>Pass</strong></td> |
|
| 745 | +</tr> |
|
| 746 | +<tr> |
|
| 747 | +<td style="text-align:left"><a href="../TIPARP">TIPARP</a></td> |
|
| 748 | +<td style="text-align:center">2</td> |
|
| 749 | +<td style="text-align:center">★ ★ ★ ☆ ☆</td> |
|
| 750 | +<td style="text-align:center"><strong>Pass</strong></td> |
|
| 751 | +</tr> |
|
| 752 | +<tr> |
|
| 753 | +<td style="text-align:left"><a href="../WAC">WAC</a></td> |
|
| 754 | +<td style="text-align:center">2</td> |
|
| 755 | +<td style="text-align:center">★ ★ ☆ ☆ ☆</td> |
|
| 756 | +<td style="text-align:center"><strong>Fail</strong></td> |
|
| 757 | +</tr> |
|
| 758 | +<tr> |
|
| 759 | +<td style="text-align:left"><a href="../YY1">YY1</a></td> |
|
| 760 | +<td style="text-align:center">2</td> |
|
| 761 | +<td style="text-align:center">★ ★ ★ ☆ ☆</td> |
|
| 762 | +<td style="text-align:center"><strong>Pass</strong></td> |
|
| 763 | +</tr> |
|
| 764 | +<tr> |
|
| 765 | +<td style="text-align:left"><a href="../ZBTB7A">ZBTB7A</a></td> |
|
| 766 | +<td style="text-align:center">2</td> |
|
| 767 | +<td style="text-align:center">★ ☆ ☆ ☆ ☆</td> |
|
| 768 | +<td style="text-align:center"><strong>Fail</strong></td> |
|
| 769 | +</tr> |
|
| 770 | +<tr> |
|
| 771 | +<td style="text-align:left"><a href="../ZFAT">ZFAT</a></td> |
|
| 772 | +<td style="text-align:center">2</td> |
|
| 773 | +<td style="text-align:center">★ ★ ☆ ☆ ☆</td> |
|
| 774 | +<td style="text-align:center"><strong>Fail</strong></td> |
|
| 775 | +</tr> |
|
| 776 | +<tr> |
|
| 777 | +<td style="text-align:left"><a href="../ZFX">ZFX</a></td> |
|
| 778 | +<td style="text-align:center">2</td> |
|
| 779 | +<td style="text-align:center">★ ★ ★ ☆ ☆</td> |
|
| 780 | +<td style="text-align:center"><strong>Pass</strong></td> |
|
| 781 | +</tr> |
|
| 782 | +</tbody> |
|
| 783 | +</table> |
|
| 784 | +<h2 id="see-also">See Also</h2> |
|
| 785 | +<p>The primary data supporting each of the mutations reported in this study can be viewed in <a href="https://www.bcgsc.ca/downloads/morinlab/GAMBL/Reddy/igv_reports/">IGV reports</a> along with mutations unique to the GAMBL re-analysis.[@drevalRevisitingReddyDLBCL2023]</p> |
|
| 786 | +<h1 id="references">References</h1> |
|
| 787 | +
|
|
| 788 | +</body>
|
|
| 789 | +</html>
|