ABL2.md
... ...
@@ -32,3 +32,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
32 32
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/ABL2.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/ABL2_hg38.html)
33 33
34 34
![image](images/proteinpaint/ABL2.svg)
35
+## ABL2 Expression
36
+![image](images/gene_expression/ABL2_by_pathology.svg)
ACAD9.md
... ...
@@ -34,3 +34,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
34 34
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/ACAD9.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/ACAD9_hg38.html)
35 35
36 36
![image](images/proteinpaint/ACAD9.svg)
37
+## ACAD9 Expression
38
+![image](images/gene_expression/ACAD9_by_pathology.svg)
ACE.md
... ...
@@ -34,3 +34,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
34 34
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/ACE.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/ACE_hg38.html)
35 35
36 36
![image](images/proteinpaint/ACE.svg)
37
+## ACE Expression
38
+![image](images/gene_expression/ACE_by_pathology.svg)
ACTB.md
... ...
@@ -61,3 +61,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
61 61
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/ACTB.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/ACTB_hg38.html)
62 62
63 63
![image](images/proteinpaint/ACTB.svg)
64
+## ACTB Expression
65
+![image](images/gene_expression/ACTB_by_pathology.svg)
ACTG1.md
... ...
@@ -42,3 +42,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
42 42
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/ACTG1.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/ACTG1_hg38.html)
43 43
44 44
![image](images/proteinpaint/ACTG1.svg)
45
+## ACTG1 Expression
46
+![image](images/gene_expression/ACTG1_by_pathology.svg)
ADAMTS1.md
... ...
@@ -35,3 +35,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
35 35
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/ADAMTS1.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/ADAMTS1_hg38.html)
36 36
37 37
![image](images/proteinpaint/ADAMTS1.svg)
38
+## ADAMTS1 Expression
39
+![image](images/gene_expression/ADAMTS1_by_pathology.svg)
ADAMTS5.md
... ...
@@ -34,3 +34,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
34 34
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/ADAMTS5.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/ADAMTS5_hg38.html)
35 35
36 36
![image](images/proteinpaint/ADAMTS5.svg)
37
+## ADAMTS5 Expression
38
+![image](images/gene_expression/ADAMTS5_by_pathology.svg)
ADNP.md
... ...
@@ -34,3 +34,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
34 34
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/ADNP.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/ADNP_hg38.html)
35 35
36 36
![image](images/proteinpaint/ADNP.svg)
37
+## ADNP Expression
38
+![image](images/gene_expression/ADNP_by_pathology.svg)
AGO4.md
... ...
@@ -34,3 +34,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
34 34
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/AGO4.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/AGO4_hg38.html)
35 35
36 36
![image](images/proteinpaint/AGO4.svg)
37
+## AGO4 Expression
38
+![image](images/gene_expression/AGO4_by_pathology.svg)
AICDA.md
... ...
@@ -40,3 +40,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
40 40
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/AICDA.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/AICDA_hg38.html)
41 41
42 42
![image](images/proteinpaint/AICDA.svg)
43
+## AICDA Expression
44
+![image](images/gene_expression/AICDA_by_pathology.svg)
ALPK2.md
... ...
@@ -40,3 +40,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
40 40
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/ALPK2.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/ALPK2_hg38.html)
41 41
42 42
![image](images/proteinpaint/ALPK2.svg)
43
+## ALPK2 Expression
44
+![image](images/gene_expression/ALPK2_by_pathology.svg)
ANK2.md
... ...
@@ -32,3 +32,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
32 32
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/ANK2.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/ANK2_hg38.html)
33 33
34 34
![image](images/proteinpaint/ANK2.svg)
35
+## ANK2 Expression
36
+![image](images/gene_expression/ANK2_by_pathology.svg)
ANKRD12.md
... ...
@@ -35,3 +35,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
35 35
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/ANKRD12.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/ANKRD12_hg38.html)
36 36
37 37
![image](images/proteinpaint/ANKRD12.svg)
38
+## ANKRD12 Expression
39
+![image](images/gene_expression/ANKRD12_by_pathology.svg)
ANKRD17.md
... ...
@@ -35,3 +35,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
35 35
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/ANKRD17.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/ANKRD17_hg38.html)
36 36
37 37
![image](images/proteinpaint/ANKRD17.svg)
38
+## ANKRD17 Expression
39
+![image](images/gene_expression/ANKRD17_by_pathology.svg)
ARHGEF1.md
... ...
@@ -34,3 +34,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
34 34
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/ARHGEF1.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/ARHGEF1_hg38.html)
35 35
36 36
![image](images/proteinpaint/ARHGEF1.svg)
37
+## ARHGEF1 Expression
38
+![image](images/gene_expression/ARHGEF1_by_pathology.svg)
ARID1A.md
... ...
@@ -43,3 +43,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
43 43
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/ARID1A.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/ARID1A_hg38.html)
44 44
45 45
![image](images/proteinpaint/ARID1A.svg)
46
+## ARID1A Expression
47
+![image](images/gene_expression/ARID1A_by_pathology.svg)
ARID1B.md
... ...
@@ -37,3 +37,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
37 37
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/ARID1B.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/ARID1B_hg38.html)
38 38
39 39
![image](images/proteinpaint/ARID1B.svg)
40
+## ARID1B Expression
41
+![image](images/gene_expression/ARID1B_by_pathology.svg)
ARID5B.md
... ...
@@ -37,3 +37,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
37 37
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/ARID5B.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/ARID5B_hg38.html)
38 38
39 39
![image](images/proteinpaint/ARID5B.svg)
40
+## ARID5B Expression
41
+![image](images/gene_expression/ARID5B_by_pathology.svg)
ATM.md
... ...
@@ -37,3 +37,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
37 37
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/ATM.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/ATM_hg38.html)
38 38
39 39
![image](images/proteinpaint/ATM.svg)
40
+## ATM Expression
41
+![image](images/gene_expression/ATM_by_pathology.svg)
ATP11C.md
... ...
@@ -32,3 +32,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
32 32
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/ATP11C.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/ATP11C_hg38.html)
33 33
34 34
![image](images/proteinpaint/ATP11C.svg)
35
+## ATP11C Expression
36
+![image](images/gene_expression/ATP11C_by_pathology.svg)
ATP2C2.md
... ...
@@ -34,3 +34,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
34 34
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/ATP2C2.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/ATP2C2_hg38.html)
35 35
36 36
![image](images/proteinpaint/ATP2C2.svg)
37
+## ATP2C2 Expression
38
+![image](images/gene_expression/ATP2C2_by_pathology.svg)
ATP6AP1.md
... ...
@@ -29,3 +29,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
29 29
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/ATP6AP1.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/ATP6AP1_hg38.html)
30 30
31 31
![image](images/proteinpaint/ATP6AP1.svg)
32
+## ATP6AP1 Expression
33
+![image](images/gene_expression/ATP6AP1_by_pathology.svg)
ATP6V1A.md
... ...
@@ -35,3 +35,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
35 35
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/ATP6V1A.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/ATP6V1A_hg38.html)
36 36
37 37
![image](images/proteinpaint/ATP6V1A.svg)
38
+## ATP6V1A Expression
39
+![image](images/gene_expression/ATP6V1A_by_pathology.svg)
ATP6V1B2.md
... ...
@@ -36,3 +36,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
36 36
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/ATP6V1B2.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/ATP6V1B2_hg38.html)
37 37
38 38
![image](images/proteinpaint/ATP6V1B2.svg)
39
+## ATP6V1B2 Expression
40
+![image](images/gene_expression/ATP6V1B2_by_pathology.svg)
ATR.md
... ...
@@ -35,3 +35,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
35 35
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/ATR.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/ATR_hg38.html)
36 36
37 37
![image](images/proteinpaint/ATR.svg)
38
+## ATR Expression
39
+![image](images/gene_expression/ATR_by_pathology.svg)
Audit-of-B\342\200\220cell-Cancer-Genes.md
... ...
@@ -1,2 +1,3 @@
1 1
2
-This is a community-driven resource and knowledge base initiated by members of the Lymphoma/Leukemia Molecular Profiling Project and fuelled by results from the genomic analysis of mature B-cell lymphomas (GAMBL) project.
... ...
\ No newline at end of file
0
+This is a community-driven resource and knowledge base initiated by members of the Lymphoma/Leukemia Molecular Profiling Project and fuelled by results from the genomic analysis of mature B-cell lymphomas (GAMBL) project. ## ATR Expression
1
+![image](images/gene_expression/ATR_by_pathology.svg)
B2M.md
... ...
@@ -74,4 +74,5 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/B
74 74
![image](images/proteinpaint/B2M.svg)
75 75
76 76
## References
77
-1. *Morin RD, Mendez-Lago M, Mungall AJ, Goya R, Mungall KL, Corbett RD, Johnson NA, Severson TM, Chiu R, Field M, Jackman S, Krzywinski M, Scott DW, Trinh DL, Tamura-Wells J, Li S, Firme MR, Rogic S, Griffith M, Chan S, Yakovenko O, Meyer IM, Zhao EY, Smailus D, Moksa M, Chittaranjan S, Rimsza L, Brooks-Wilson A, Spinelli JJ, Ben-Neriah S, Meissner B, Woolcock B, Boyle M, McDonald H, Tam A, Zhao Y, Delaney A, Zeng T, Tse K, Butterfield Y, Birol I, Holt R, Schein J, Horsman DE, Moore R, Jones SJ, Connors JM, Hirst M, Gascoyne RD, Marra MA. Frequent mutation of histone-modifying genes in non-Hodgkin lymphoma. Nature. 2011 Jul 27;476(7360):298-303. doi: 10.1038/nature10351. PMID: 21796119; PMCID: PMC3210554.*
... ...
\ No newline at end of file
0
+1. *Morin RD, Mendez-Lago M, Mungall AJ, Goya R, Mungall KL, Corbett RD, Johnson NA, Severson TM, Chiu R, Field M, Jackman S, Krzywinski M, Scott DW, Trinh DL, Tamura-Wells J, Li S, Firme MR, Rogic S, Griffith M, Chan S, Yakovenko O, Meyer IM, Zhao EY, Smailus D, Moksa M, Chittaranjan S, Rimsza L, Brooks-Wilson A, Spinelli JJ, Ben-Neriah S, Meissner B, Woolcock B, Boyle M, McDonald H, Tam A, Zhao Y, Delaney A, Zeng T, Tse K, Butterfield Y, Birol I, Holt R, Schein J, Horsman DE, Moore R, Jones SJ, Connors JM, Hirst M, Gascoyne RD, Marra MA. Frequent mutation of histone-modifying genes in non-Hodgkin lymphoma. Nature. 2011 Jul 27;476(7360):298-303. doi: 10.1038/nature10351. PMID: 21796119; PMCID: PMC3210554.*## B2M Expression
1
+![image](images/gene_expression/B2M_by_pathology.svg)
BACH2.md
... ...
@@ -39,3 +39,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
39 39
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/BACH2.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/BACH2_hg38.html)
40 40
41 41
![image](images/proteinpaint/BACH2.svg)
42
+## BACH2 Expression
43
+![image](images/gene_expression/BACH2_by_pathology.svg)
BCL10.md
... ...
@@ -55,4 +55,5 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/B
55 55
56 56
1. *Luminari S, Intini D, Baldini L, Berti E, Bertoni F, Zucca E, Cro L, Maiolo AT, Cavalli F, Neri A. BCL10 gene mutations rarely occur in lymphoid malignancies. Leukemia. 2000 May;14(5):905-8. doi: 10.1038/sj.leu.2401747. PMID: 10803524.*
57 57
58
-2. *Morin RD, Mendez-Lago M, Mungall AJ, Goya R, Mungall KL, Corbett RD, Johnson NA, Severson TM, Chiu R, Field M, Jackman S, Krzywinski M, Scott DW, Trinh DL, Tamura-Wells J, Li S, Firme MR, Rogic S, Griffith M, Chan S, Yakovenko O, Meyer IM, Zhao EY, Smailus D, Moksa M, Chittaranjan S, Rimsza L, Brooks-Wilson A, Spinelli JJ, Ben-Neriah S, Meissner B, Woolcock B, Boyle M, McDonald H, Tam A, Zhao Y, Delaney A, Zeng T, Tse K, Butterfield Y, Birol I, Holt R, Schein J, Horsman DE, Moore R, Jones SJ, Connors JM, Hirst M, Gascoyne RD, Marra MA. Frequent mutation of histone-modifying genes in non-Hodgkin lymphoma. Nature. 2011 Jul 27;476(7360):298-303. doi: 10.1038/nature10351. PMID: 21796119; PMCID: PMC3210554.*
... ...
\ No newline at end of file
0
+2. *Morin RD, Mendez-Lago M, Mungall AJ, Goya R, Mungall KL, Corbett RD, Johnson NA, Severson TM, Chiu R, Field M, Jackman S, Krzywinski M, Scott DW, Trinh DL, Tamura-Wells J, Li S, Firme MR, Rogic S, Griffith M, Chan S, Yakovenko O, Meyer IM, Zhao EY, Smailus D, Moksa M, Chittaranjan S, Rimsza L, Brooks-Wilson A, Spinelli JJ, Ben-Neriah S, Meissner B, Woolcock B, Boyle M, McDonald H, Tam A, Zhao Y, Delaney A, Zeng T, Tse K, Butterfield Y, Birol I, Holt R, Schein J, Horsman DE, Moore R, Jones SJ, Connors JM, Hirst M, Gascoyne RD, Marra MA. Frequent mutation of histone-modifying genes in non-Hodgkin lymphoma. Nature. 2011 Jul 27;476(7360):298-303. doi: 10.1038/nature10351. PMID: 21796119; PMCID: PMC3210554.*## BCL10 Expression
1
+![image](images/gene_expression/BCL10_by_pathology.svg)
BCL11A.md
... ...
@@ -60,3 +60,5 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/B
60 60
## References
61 61
62 62
1. *Satterwhite E, Sonoki T, Willis TG, Harder L, Nowak R, Arriola EL, Liu H, Price HP, Gesk S, Steinemann D, Schlegelberger B, Oscier DG, Siebert R, Tucker PW, Dyer MJ. The BCL11 gene family: involvement of BCL11A in lymphoid malignancies. Blood. 2001 Dec 1;98(12):3413-20. doi: 10.1182/blood.v98.12.3413. PMID: 11719382.*
63
+## BCL11A Expression
64
+![image](images/gene_expression/BCL11A_by_pathology.svg)
BCL2.md
... ...
@@ -72,3 +72,5 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/B
72 72
2. *Hilton L et al. Motive and Opportunity: MYC rearrangements in high-grade B-cell lymphoma with MYC
73 73
and BCL2 rearrangements-an LLMPP study. Blood. 2024. Epub May 3.*
74 74
3. *Singh K, Briggs JM. Functional Implications of the spectrum of BCL2 mutations in Lymphoma. Mutat Res Rev Mutat Res. 2016 Jul-Sep;769:1-18. doi: 10.1016/j.mrrev.2016.06.001. Epub 2016 Jun 16. PMID: 27543313.*
75
+## BCL2 Expression
76
+![image](images/gene_expression/BCL2_by_pathology.svg)
BCL2L11.md
... ...
@@ -36,3 +36,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
36 36
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/BCL2L11.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/BCL2L11_hg38.html)
37 37
38 38
![image](images/proteinpaint/BCL2L11.svg)
39
+## BCL2L11 Expression
40
+![image](images/gene_expression/BCL2L11_by_pathology.svg)
BCL6.md
... ...
@@ -74,3 +74,5 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/B
74 74
1. *Pasqualucci L, Migliazza A, Basso K, Houldsworth J, Chaganti RS, Dalla-Favera R. Mutations of the BCL6 proto-oncogene disrupt its negative autoregulation in diffuse large B-cell lymphoma. Blood. 2003 Apr 15;101(8):2914-23. doi: 10.1182/blood-2002-11-3387. Epub 2002 Dec 19. PMID: 12515714.*
75 75
2. *Bal E, Kumar R, Hadigol M, Holmes AB, Hilton LK, Loh JW, Dreval K, Wong JCH, Vlasevska S, Corinaldesi C, Soni RK, Basso K, Morin RD, Khiabanian H, Pasqualucci L, Dalla-Favera R. Super-enhancer hypermutation alters oncogene expression in B cell lymphoma. Nature. 2022 Jul;607(7920):808-815. doi: 10.1038/s41586-022-04906-8. Epub 2022 Jul 6. Erratum in: Nature. 2022 Nov;611(7934):E2. PMID: 35794478; PMCID: PMC9583699.*
76 76
3. *Schmitz R, Wright GW, Huang DW, Johnson CA, Phelan JD, Wang JQ, Roulland S, Kasbekar M, Young RM, Shaffer AL, Hodson DJ, Xiao W, Yu X, Yang Y, Zhao H, Xu W, Liu X, Zhou B, Du W, Chan WC, Jaffe ES, Gascoyne RD, Connors JM, Campo E, Lopez-Guillermo A, Rosenwald A, Ott G, Delabie J, Rimsza LM, Tay Kuang Wei K, Zelenetz AD, Leonard JP, Bartlett NL, Tran B, Shetty J, Zhao Y, Soppet DR, Pittaluga S, Wilson WH, Staudt LM. Genetics and Pathogenesis of Diffuse Large B-Cell Lymphoma. N Engl J Med. 2018 Apr 12;378(15):1396-1407. doi: 10.1056/NEJMoa1801445. PMID: 29641966; PMCID: PMC6010183.*
77
+## BCL6 Expression
78
+![image](images/gene_expression/BCL6_by_pathology.svg)
BCL7A.md
... ...
@@ -54,3 +54,5 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/B
54 54
1. *Ramos-Medina R, Montes-Moreno S, Maestre L, Cañamero M, Rodríguez-Pinilla M, Martínez-Torrecuadrada J, Piris MÁ, Majid A, Dyer MJ, Pulford K, Roncador G. BCL7A protein expression in normal and malignant lymphoid tissues. Br J Haematol. 2013 Jan;160(1):106-9. doi: 10.1111/bjh.12080. Epub 2012 Oct 9. PMID: 23043359.*
55 55
2. *Grande BM, Gerhard DS, Jiang A, Griner NB, Abramson JS, Alexander TB, Allen H, Ayers LW, Bethony JM, Bhatia K, Bowen J, Casper C, Choi JK, Culibrk L, Davidsen TM, Dyer MA, Gastier-Foster JM, Gesuwan P, Greiner TC, Gross TG, Hanf B, Harris NL, He Y, Irvin JD, Jaffe ES, Jones SJM, Kerchan P, Knoetze N, Leal FE, Lichtenberg TM, Ma Y, Martin JP, Martin MR, Mbulaiteye SM, Mullighan CG, Mungall AJ, Namirembe C, Novik K, Noy A, Ogwang MD, Omoding A, Orem J, Reynolds SJ, Rushton CK, Sandlund JT, Schmitz R, Taylor C, Wilson WH, Wright GW, Zhao EY, Marra MA, Morin RD, Staudt LM. Genome-wide discovery of somatic coding and noncoding mutations in pediatric endemic and sporadic Burkitt lymphoma. Blood. 2019 Mar 21;133(12):1313-1324. doi: 10.1182/blood-2018-09-871418. Epub 2019 Jan 7. PMID: 30617194; PMCID: PMC6428665.*
56 56
3. *Baliñas-Gavira C, Rodríguez MI, Andrades A, Cuadros M, Álvarez-Pérez JC, Álvarez-Prado ÁF, de Yébenes VG, Sánchez-Hernández S, Fernández-Vigo E, Muñoz J, Martín F, Ramiro AR, Martínez-Climent JA, Medina PP. Frequent mutations in the amino-terminal domain of BCL7A impair its tumor suppressor role in DLBCL. Leukemia. 2020 Oct;34(10):2722-2735. doi: 10.1038/s41375-020-0919-5. Epub 2020 Jun 24. PMID: 32576963.*
57
+## BCL7A Expression
58
+![image](images/gene_expression/BCL7A_by_pathology.svg)
BCOR.md
... ...
@@ -50,3 +50,5 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/B
50 50
51 51
1. *Kang JH, Lee SH, Lee J, Choi M, Cho J, Kim SJ, Kim WS, Ko YH, Yoo HY. The mutation of BCOR is highly recurrent and oncogenic in mature T-cell lymphoma. BMC Cancer. 2021 Jan 19;21(1):82. doi: 10.1186/s12885-021-07806-8. PMID: 33468080; PMCID: PMC7816311.*
52 52
2. *Nadeu F, Martin-Garcia D, Clot G, Díaz-Navarro A, Duran-Ferrer M, Navarro A, Vilarrasa-Blasi R, Kulis M, Royo R, Gutiérrez-Abril J, Valdés-Mas R, López C, Chapaprieta V, Puiggros M, Castellano G, Costa D, Aymerich M, Jares P, Espinet B, Muntañola A, Ribera-Cortada I, Siebert R, Colomer D, Torrents D, Gine E, López-Guillermo A, Küppers R, Martin-Subero JI, Puente XS, Beà S, Campo E. Genomic and epigenomic insights into the origin, pathogenesis, and clinical behavior of mantle cell lymphoma subtypes. Blood. 2020 Sep 17;136(12):1419-1432. doi: 10.1182/blood.2020005289. PMID: 32584970; PMCID: PMC7498364.*
53
+## BCOR Expression
54
+![image](images/gene_expression/BCOR_by_pathology.svg)
BCR.md
... ...
@@ -56,3 +56,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
56 56
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/BCR.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/BCR_hg38.html)
57 57
58 58
![image](images/proteinpaint/BCR.svg)
59
+## BCR Expression
60
+![image](images/gene_expression/BCR_by_pathology.svg)
BIRC3.md
... ...
@@ -42,3 +42,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
42 42
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/BIRC3.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/BIRC3_hg38.html)
43 43
44 44
![image](images/proteinpaint/BIRC3.svg)
45
+## BIRC3 Expression
46
+![image](images/gene_expression/BIRC3_by_pathology.svg)
BIRC6.md
... ...
@@ -54,3 +54,5 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/B
54 54
## References
55 55
56 56
1. *Sarkozy C, Hung SS, Chavez EA, Duns G, Takata K, Chong LC, Aoki T, Jiang A, Miyata-Takata T, Telenius A, Slack GW, Molina TJ, Ben-Neriah S, Farinha P, Dartigues P, Damotte D, Mottok A, Salles GA, Casasnovas RO, Savage KJ, Laurent C, Scott DW, Traverse-Glehen A, Steidl C. Mutational landscape of gray zone lymphoma. Blood. 2021 Apr 1;137(13):1765-1776. doi: 10.1182/blood.2020007507. PMID: 32961552.*
57
+## BIRC6 Expression
58
+![image](images/gene_expression/BIRC6_by_pathology.svg)
BLK.md
... ...
@@ -37,3 +37,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
37 37
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/BLK.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/BLK_hg38.html)
38 38
39 39
![image](images/proteinpaint/BLK.svg)
40
+## BLK Expression
41
+![image](images/gene_expression/BLK_by_pathology.svg)
BMP7.md
... ...
@@ -55,3 +55,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
55 55
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/BMP7.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/BMP7_hg38.html)
56 56
57 57
![image](images/proteinpaint/BMP7.svg)
58
+## BMP7 Expression
59
+![image](images/gene_expression/BMP7_by_pathology.svg)
BRAF.md
... ...
@@ -60,3 +60,5 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/B
60 60
61 61
## References
62 62
1. *Kamata T, Hussain J, Giblett S, Hayward R, Marais R, Pritchard C. BRAF inactivation drives aneuploidy by deregulating CRAF. Cancer Res. 2010 Nov 1;70(21):8475-86. doi: 10.1158/0008-5472.CAN-10-0603. Epub 2010 Oct 26. PMID: 20978199; PMCID: PMC2975377.*
63
+## BRAF Expression
64
+![image](images/gene_expression/BRAF_by_pathology.svg)
BRD4.md
... ...
@@ -34,3 +34,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
34 34
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/BRD4.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/BRD4_hg38.html)
35 35
36 36
![image](images/proteinpaint/BRD4.svg)
37
+## BRD4 Expression
38
+![image](images/gene_expression/BRD4_by_pathology.svg)
BRINP3.md
... ...
@@ -38,3 +38,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
38 38
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/BRINP3.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/BRINP3_hg38.html)
39 39
40 40
![image](images/proteinpaint/BRINP3.svg)
41
+## BRINP3 Expression
42
+![image](images/gene_expression/BRINP3_by_pathology.svg)
BTBD3.md
... ...
@@ -35,3 +35,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
35 35
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/BTBD3.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/BTBD3_hg38.html)
36 36
37 37
![image](images/proteinpaint/BTBD3.svg)
38
+## BTBD3 Expression
39
+![image](images/gene_expression/BTBD3_by_pathology.svg)
BTG1.md
... ...
@@ -81,4 +81,5 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/B
81 81
1. *Wright GW, Huang DW, Phelan JD, Coulibaly ZA, Roulland S, Young RM, Wang JQ, Schmitz R, Morin RD, Tang J, Jiang A, Bagaev A, Plotnikova O, Kotlov N, Johnson CA, Wilson WH, Scott DW, Staudt LM. A Probabilistic Classification Tool for Genetic Subtypes of Diffuse Large B Cell Lymphoma with Therapeutic Implications. Cancer Cell. 2020 Apr 13;37(4):551-568.e14. doi: 10.1016/j.ccell.2020.03.015. PMID: 32289277; PMCID: PMC8459709.*
82 82
2. *Delage L, Lambert M, Bardel É, Kundlacz C, Chartoire D, Conchon A, Peugnet AL, Gorka L, Auberger P, Jacquel A, Soussain C, Destaing O, Delecluse HJ, Delecluse S, Merabet S, Traverse-Glehen A, Salles G, Bachy E, Billaud M, Ghesquières H, Genestier L, Rouault JP, Sujobert P. BTG1 inactivation drives lymphomagenesis and promotes lymphoma dissemination through activation of BCAR1. Blood. 2023 Mar 9;141(10):1209-1220. doi: 10.1182/blood.2022016943. PMID: 36375119.*
83 83
3. *Mlynarczyk C, Teater M, Pae J, Chin CR, Wang L, Arulraj T, Barisic D, Papin A, Hoehn KB, Kots E, Ersching J, Bandyopadhyay A, Barin E, Poh HX, Evans CM, Chadburn A, Chen Z, Shen H, Isles HM, Pelzer B, Tsialta I, Doane AS, Geng H, Rehman MH, Melnick J, Morgan W, Nguyen DTT, Elemento O, Kharas MG, Jaffrey SR, Scott DW, Khelashvili G, Meyer-Hermann M, Victora GD, Melnick A. BTG1 mutation yields supercompetitive B cells primed for malignant transformation. Science. 2023 Jan 20;379(6629):eabj7412. doi: 10.1126/science.abj7412. Epub 2023 Jan 20. PMID: 36656933; PMCID: PMC10515739.*
84
-4. *Morin RD, Mendez-Lago M, Mungall AJ, Goya R, Mungall KL, Corbett RD, Johnson NA, Severson TM, Chiu R, Field M, Jackman S, Krzywinski M, Scott DW, Trinh DL, Tamura-Wells J, Li S, Firme MR, Rogic S, Griffith M, Chan S, Yakovenko O, Meyer IM, Zhao EY, Smailus D, Moksa M, Chittaranjan S, Rimsza L, Brooks-Wilson A, Spinelli JJ, Ben-Neriah S, Meissner B, Woolcock B, Boyle M, McDonald H, Tam A, Zhao Y, Delaney A, Zeng T, Tse K, Butterfield Y, Birol I, Holt R, Schein J, Horsman DE, Moore R, Jones SJ, Connors JM, Hirst M, Gascoyne RD, Marra MA. Frequent mutation of histone-modifying genes in non-Hodgkin lymphoma. Nature. 2011 Jul 27;476(7360):298-303. doi: 10.1038/nature10351. PMID: 21796119; PMCID: PMC3210554.*
... ...
\ No newline at end of file
0
+4. *Morin RD, Mendez-Lago M, Mungall AJ, Goya R, Mungall KL, Corbett RD, Johnson NA, Severson TM, Chiu R, Field M, Jackman S, Krzywinski M, Scott DW, Trinh DL, Tamura-Wells J, Li S, Firme MR, Rogic S, Griffith M, Chan S, Yakovenko O, Meyer IM, Zhao EY, Smailus D, Moksa M, Chittaranjan S, Rimsza L, Brooks-Wilson A, Spinelli JJ, Ben-Neriah S, Meissner B, Woolcock B, Boyle M, McDonald H, Tam A, Zhao Y, Delaney A, Zeng T, Tse K, Butterfield Y, Birol I, Holt R, Schein J, Horsman DE, Moore R, Jones SJ, Connors JM, Hirst M, Gascoyne RD, Marra MA. Frequent mutation of histone-modifying genes in non-Hodgkin lymphoma. Nature. 2011 Jul 27;476(7360):298-303. doi: 10.1038/nature10351. PMID: 21796119; PMCID: PMC3210554.*## BTG1 Expression
1
+![image](images/gene_expression/BTG1_by_pathology.svg)
BTG2.md
... ...
@@ -52,4 +52,5 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/B
52 52
## References
53 53
1. *Wright GW, Huang DW, Phelan JD, Coulibaly ZA, Roulland S, Young RM, Wang JQ, Schmitz R, Morin RD, Tang J, Jiang A, Bagaev A, Plotnikova O, Kotlov N, Johnson CA, Wilson WH, Scott DW, Staudt LM. A Probabilistic Classification Tool for Genetic Subtypes of Diffuse Large B Cell Lymphoma with Therapeutic Implications. Cancer Cell. 2020 Apr 13;37(4):551-568.e14. doi: 10.1016/j.ccell.2020.03.015. PMID: 32289277; PMCID: PMC8459709.*
54 54
2. *Guo D, Hong L, Ji H, Jiang Y, Lu L, Wang X, Huang H. The Mutation of BTG2 Gene Predicts a Poor Outcome in Primary Testicular Diffuse Large B-Cell Lymphoma. J Inflamm Res. 2022 Mar 10;15:1757-1769. doi: 10.2147/JIR.S341355. PMID: 35300216; PMCID: PMC8923029.*
55
-3. *Morin RD, Mendez-Lago M, Mungall AJ, Goya R, Mungall KL, Corbett RD, Johnson NA, Severson TM, Chiu R, Field M, Jackman S, Krzywinski M, Scott DW, Trinh DL, Tamura-Wells J, Li S, Firme MR, Rogic S, Griffith M, Chan S, Yakovenko O, Meyer IM, Zhao EY, Smailus D, Moksa M, Chittaranjan S, Rimsza L, Brooks-Wilson A, Spinelli JJ, Ben-Neriah S, Meissner B, Woolcock B, Boyle M, McDonald H, Tam A, Zhao Y, Delaney A, Zeng T, Tse K, Butterfield Y, Birol I, Holt R, Schein J, Horsman DE, Moore R, Jones SJ, Connors JM, Hirst M, Gascoyne RD, Marra MA. Frequent mutation of histone-modifying genes in non-Hodgkin lymphoma. Nature. 2011 Jul 27;476(7360):298-303. doi: 10.1038/nature10351. PMID: 21796119; PMCID: PMC3210554.*
... ...
\ No newline at end of file
0
+3. *Morin RD, Mendez-Lago M, Mungall AJ, Goya R, Mungall KL, Corbett RD, Johnson NA, Severson TM, Chiu R, Field M, Jackman S, Krzywinski M, Scott DW, Trinh DL, Tamura-Wells J, Li S, Firme MR, Rogic S, Griffith M, Chan S, Yakovenko O, Meyer IM, Zhao EY, Smailus D, Moksa M, Chittaranjan S, Rimsza L, Brooks-Wilson A, Spinelli JJ, Ben-Neriah S, Meissner B, Woolcock B, Boyle M, McDonald H, Tam A, Zhao Y, Delaney A, Zeng T, Tse K, Butterfield Y, Birol I, Holt R, Schein J, Horsman DE, Moore R, Jones SJ, Connors JM, Hirst M, Gascoyne RD, Marra MA. Frequent mutation of histone-modifying genes in non-Hodgkin lymphoma. Nature. 2011 Jul 27;476(7360):298-303. doi: 10.1038/nature10351. PMID: 21796119; PMCID: PMC3210554.*## BTG2 Expression
1
+![image](images/gene_expression/BTG2_by_pathology.svg)
BTK.md
... ...
@@ -39,3 +39,5 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/B
39 39
## References
40 40
1. *Hu N, Wang F, Sun T, Xu Z, Zhang J, Bernard D, Xu S, Wang S, Kaminski M, Devata S, Phillips T, Malek SN. Follicular Lymphoma-associated BTK Mutations are Inactivating Resulting in Augmented AKT Activation. Clin Cancer Res. 2021 Apr 15;27(8):2301-2313. doi: 10.1158/1078-0432.CCR-20-3741. Epub 2021 Jan 8. PMID: 33419778; PMCID: PMC8046715.*
41 41
2. *Schejbel L, Breinholt MF, Gang AO, Nielsen TH, Pedersen LM, Høgdall E, Nørgaard P. Inactivating BTK mutations in large B-cell lymphoma in a real-world cohort: Strong correlation with BCL2 translocation. EJHaem. 2022 Jun 24;3(3):936-939. doi: 10.1002/jha2.489. PMID: 36051027; PMCID: PMC9421985.*
42
+## BTK Expression
43
+![image](images/gene_expression/BTK_by_pathology.svg)
C10orf12.md
... ...
@@ -33,3 +33,5 @@ images/proteinpaint/C10orf12_NM_032440.svg)
33 33
View all variants in GenomePaint [hg19](https://www.bcgsc.ca/downloads/morinlab/GAMBL/test/genes/C10orf12.html) or [hg38](https://www.bcgsc.ca/downloads/morinlab/GAMBL/test/genes/C10orf12_hg38.html)
34 34
35 35
![image](images/proteinpaint/C10orf12.svg)
36
+## C10orf12 Expression
37
+![image](images/gene_expression/C10orf12_by_pathology.svg)
C6orf27.md
... ...
@@ -28,3 +28,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
28 28
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/C6orf27.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/C6orf27_hg38.html)
29 29
30 30
![image](images/proteinpaint/C6orf27.svg)
31
+## C6orf27 Expression
32
+![image](images/gene_expression/C6orf27_by_pathology.svg)
CAD.md
... ...
@@ -40,3 +40,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
40 40
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/CAD.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/CAD_hg38.html)
41 41
42 42
![image](images/proteinpaint/CAD.svg)
43
+## CAD Expression
44
+![image](images/gene_expression/CAD_by_pathology.svg)
CADPS2.md
... ...
@@ -35,3 +35,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
35 35
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/CADPS2.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/CADPS2_hg38.html)
36 36
37 37
![image](images/proteinpaint/CADPS2.svg)
38
+## CADPS2 Expression
39
+![image](images/gene_expression/CADPS2_by_pathology.svg)
CARD11.md
... ...
@@ -65,3 +65,5 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/C
65 65
66 66
## References
67 67
1. *Morin RD, Mendez-Lago M, Mungall AJ, Goya R, Mungall KL, Corbett RD, Johnson NA, Severson TM, Chiu R, Field M, Jackman S, Krzywinski M, Scott DW, Trinh DL, Tamura-Wells J, Li S, Firme MR, Rogic S, Griffith M, Chan S, Yakovenko O, Meyer IM, Zhao EY, Smailus D, Moksa M, Chittaranjan S, Rimsza L, Brooks-Wilson A, Spinelli JJ, Ben-Neriah S, Meissner B, Woolcock B, Boyle M, McDonald H, Tam A, Zhao Y, Delaney A, Zeng T, Tse K, Butterfield Y, Birol I, Holt R, Schein J, Horsman DE, Moore R, Jones SJ, Connors JM, Hirst M, Gascoyne RD, Marra MA. Frequent mutation of histone-modifying genes in non-Hodgkin lymphoma. Nature. 2011 Jul 27;476(7360):298-303. doi: 10.1038/nature10351. PMID: 21796119; PMCID: PMC3210554.*
68
+## CARD11 Expression
69
+![image](images/gene_expression/CARD11_by_pathology.svg)
CARD4.md
... ...
@@ -28,3 +28,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
28 28
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/CARD4.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/CARD4_hg38.html)
29 29
30 30
![image](images/proteinpaint/CARD4.svg)
31
+## CARD4 Expression
32
+![image](images/gene_expression/CARD4_by_pathology.svg)
CASP8.md
... ...
@@ -44,3 +44,5 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/C
44 44
45 45
1. *Yoo NJ, Soung YH, Lee SH, Kim KM, Lee SH. Absence of CASP7 and CASP8 mutation in gastrointestinal lymphomas. Eur J Haematol. 2007 Jul;79(1):86-7. doi: 10.1111/j.1600-0609.2007.00865.x. Epub 2007 May 28. PMID: 17532763.*
46 46
2. *Hakem A, El Ghamrasni S, Maire G, Lemmers B, Karaskova J, Jurisicova A, Sanchez O, Squire J, Hakem R. Caspase-8 is essential for maintaining chromosomal stability and suppressing B-cell lymphomagenesis. Blood. 2012 Apr 12;119(15):3495-502. doi: 10.1182/blood-2011-07-367532. Epub 2012 Feb 16. PMID: 22343728.*
47
+## CASP8 Expression
48
+![image](images/gene_expression/CASP8_by_pathology.svg)
CBLB.md
... ...
@@ -35,3 +35,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
35 35
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/CBLB.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/CBLB_hg38.html)
36 36
37 37
![image](images/proteinpaint/CBLB.svg)
38
+## CBLB Expression
39
+![image](images/gene_expression/CBLB_by_pathology.svg)
CCDC42BPB.md
... ...
@@ -26,3 +26,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
26 26
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/CCDC42BPB.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/CCDC42BPB_hg38.html)
27 27
28 28
![image](images/proteinpaint/CCDC42BPB.svg)
29
+## CCDC42BPB Expression
30
+![image](images/gene_expression/CCDC42BPB_by_pathology.svg)
CCL4.md
... ...
@@ -35,3 +35,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
35 35
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/CCL4.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/CCL4_hg38.html)
36 36
37 37
![image](images/proteinpaint/CCL4.svg)
38
+## CCL4 Expression
39
+![image](images/gene_expression/CCL4_by_pathology.svg)
CCND1.md
... ...
@@ -32,3 +32,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
32 32
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/CCND1.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/CCND1_hg38.html)
33 33
34 34
![image](images/proteinpaint/CCND1.svg)
35
+## CCND1 Expression
36
+![image](images/gene_expression/CCND1_by_pathology.svg)
CCND3.md
... ...
@@ -88,3 +88,5 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/C
88 88
## References
89 89
1. *Morin RD, Mendez-Lago M, Mungall AJ, Goya R, Mungall KL, Corbett RD, Johnson NA, Severson TM, Chiu R, Field M, Jackman S, Krzywinski M, Scott DW, Trinh DL, Tamura-Wells J, Li S, Firme MR, Rogic S, Griffith M, Chan S, Yakovenko O, Meyer IM, Zhao EY, Smailus D, Moksa M, Chittaranjan S, Rimsza L, Brooks-Wilson A, Spinelli JJ, Ben-Neriah S, Meissner B, Woolcock B, Boyle M, McDonald H, Tam A, Zhao Y, Delaney A, Zeng T, Tse K, Butterfield Y, Birol I, Holt R, Schein J, Horsman DE, Moore R, Jones SJ, Connors JM, Hirst M, Gascoyne RD, Marra MA. Frequent mutation of histone-modifying genes in non-Hodgkin lymphoma. Nature. 2011 Jul 27;476(7360):298-303. doi: 10.1038/nature10351. PMID: 21796119; PMCID: PMC3210554.*
90 90
2. *Schmitz, R., et al. (2012). "Burkitt lymphoma pathogenesis and therapeutic targets from structural and functional genomics." Nature, 490(7418), 116-120.*
91
+## CCND3 Expression
92
+![image](images/gene_expression/CCND3_by_pathology.svg)
CCNF.md
... ...
@@ -34,3 +34,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
34 34
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/CCNF.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/CCNF_hg38.html)
35 35
36 36
![image](images/proteinpaint/CCNF.svg)
37
+## CCNF Expression
38
+![image](images/gene_expression/CCNF_by_pathology.svg)
CCT6B.md
... ...
@@ -34,3 +34,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
34 34
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/CCT6B.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/CCT6B_hg38.html)
35 35
36 36
![image](images/proteinpaint/CCT6B.svg)
37
+## CCT6B Expression
38
+![image](images/gene_expression/CCT6B_by_pathology.svg)
CD22.md
... ...
@@ -35,3 +35,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
35 35
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/CD22.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/CD22_hg38.html)
36 36
37 37
![image](images/proteinpaint/CD22.svg)
38
+## CD22 Expression
39
+![image](images/gene_expression/CD22_by_pathology.svg)
CD274.md
... ...
@@ -41,4 +41,5 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/C
41 41
## References
42 42
43 43
1. *Huang RSP, Decker B, Murugesan K, Hiemenz M, Mata DA, Li G, Creeden J, Ramkissoon SH, Ross JS. Pan-cancer analysis of CD274 (PD-L1) mutations in 314,631 patient samples and subset correlation with PD-L1 protein expression. J Immunother Cancer. 2021 Jun;9(6):e002558. doi: 10.1136/jitc-2021-002558. PMID: 34130989; PMCID: PMC8207995.*
44
-2. *Morin RD, Mendez-Lago M, Mungall AJ, Goya R, Mungall KL, Corbett RD, Johnson NA, Severson TM, Chiu R, Field M, Jackman S, Krzywinski M, Scott DW, Trinh DL, Tamura-Wells J, Li S, Firme MR, Rogic S, Griffith M, Chan S, Yakovenko O, Meyer IM, Zhao EY, Smailus D, Moksa M, Chittaranjan S, Rimsza L, Brooks-Wilson A, Spinelli JJ, Ben-Neriah S, Meissner B, Woolcock B, Boyle M, McDonald H, Tam A, Zhao Y, Delaney A, Zeng T, Tse K, Butterfield Y, Birol I, Holt R, Schein J, Horsman DE, Moore R, Jones SJ, Connors JM, Hirst M, Gascoyne RD, Marra MA. Frequent mutation of histone-modifying genes in non-Hodgkin lymphoma. Nature. 2011 Jul 27;476(7360):298-303. doi: 10.1038/nature10351. PMID: 21796119; PMCID: PMC3210554.*
... ...
\ No newline at end of file
0
+2. *Morin RD, Mendez-Lago M, Mungall AJ, Goya R, Mungall KL, Corbett RD, Johnson NA, Severson TM, Chiu R, Field M, Jackman S, Krzywinski M, Scott DW, Trinh DL, Tamura-Wells J, Li S, Firme MR, Rogic S, Griffith M, Chan S, Yakovenko O, Meyer IM, Zhao EY, Smailus D, Moksa M, Chittaranjan S, Rimsza L, Brooks-Wilson A, Spinelli JJ, Ben-Neriah S, Meissner B, Woolcock B, Boyle M, McDonald H, Tam A, Zhao Y, Delaney A, Zeng T, Tse K, Butterfield Y, Birol I, Holt R, Schein J, Horsman DE, Moore R, Jones SJ, Connors JM, Hirst M, Gascoyne RD, Marra MA. Frequent mutation of histone-modifying genes in non-Hodgkin lymphoma. Nature. 2011 Jul 27;476(7360):298-303. doi: 10.1038/nature10351. PMID: 21796119; PMCID: PMC3210554.*## CD274 Expression
1
+![image](images/gene_expression/CD274_by_pathology.svg)
CD36.md
... ...
@@ -41,3 +41,5 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/C
41 41
## References
42 42
43 43
1. *Carreras J, Ikoma H, Kikuti YY, Miyaoka M, Hiraiwa S, Tomita S, Kondo Y, Ito A, Nagase S, Miura H, Kawada H, Roncador G, Campo E, Hamoudi R, Nakamura N. Mutational, immune microenvironment, and clinicopathological profiles of diffuse large B-cell lymphoma and follicular lymphoma with BCL6 rearrangement. Virchows Arch. 2024 Apr;484(4):657-676. doi: 10.1007/s00428-024-03774-z. Epub 2024 Mar 11. PMID: 38462571.*
44
+## CD36 Expression
45
+![image](images/gene_expression/CD36_by_pathology.svg)
CD44.md
... ...
@@ -40,3 +40,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
40 40
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/CD44.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/CD44_hg38.html)
41 41
42 42
![image](images/proteinpaint/CD44.svg)
43
+## CD44 Expression
44
+![image](images/gene_expression/CD44_by_pathology.svg)
CD58.md
... ...
@@ -46,4 +46,5 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/C
46 46
## References
47 47
48 48
1. *Challa-Malladi M, Lieu YK, Califano O, Holmes AB, Bhagat G, Murty VV, Dominguez-Sola D, Pasqualucci L, Dalla-Favera R. Combined genetic inactivation of β2-Microglobulin and CD58 reveals frequent escape from immune recognition in diffuse large B cell lymphoma. Cancer Cell. 2011 Dec 13;20(6):728-40. doi: 10.1016/j.ccr.2011.11.006. Epub 2011 Dec 1. PMID: 22137796; PMCID: PMC3660995.*
49
-2. *Morin RD, Mendez-Lago M, Mungall AJ, Goya R, Mungall KL, Corbett RD, Johnson NA, Severson TM, Chiu R, Field M, Jackman S, Krzywinski M, Scott DW, Trinh DL, Tamura-Wells J, Li S, Firme MR, Rogic S, Griffith M, Chan S, Yakovenko O, Meyer IM, Zhao EY, Smailus D, Moksa M, Chittaranjan S, Rimsza L, Brooks-Wilson A, Spinelli JJ, Ben-Neriah S, Meissner B, Woolcock B, Boyle M, McDonald H, Tam A, Zhao Y, Delaney A, Zeng T, Tse K, Butterfield Y, Birol I, Holt R, Schein J, Horsman DE, Moore R, Jones SJ, Connors JM, Hirst M, Gascoyne RD, Marra MA. Frequent mutation of histone-modifying genes in non-Hodgkin lymphoma. Nature. 2011 Jul 27;476(7360):298-303. doi: 10.1038/nature10351. PMID: 21796119; PMCID: PMC3210554.*
... ...
\ No newline at end of file
0
+2. *Morin RD, Mendez-Lago M, Mungall AJ, Goya R, Mungall KL, Corbett RD, Johnson NA, Severson TM, Chiu R, Field M, Jackman S, Krzywinski M, Scott DW, Trinh DL, Tamura-Wells J, Li S, Firme MR, Rogic S, Griffith M, Chan S, Yakovenko O, Meyer IM, Zhao EY, Smailus D, Moksa M, Chittaranjan S, Rimsza L, Brooks-Wilson A, Spinelli JJ, Ben-Neriah S, Meissner B, Woolcock B, Boyle M, McDonald H, Tam A, Zhao Y, Delaney A, Zeng T, Tse K, Butterfield Y, Birol I, Holt R, Schein J, Horsman DE, Moore R, Jones SJ, Connors JM, Hirst M, Gascoyne RD, Marra MA. Frequent mutation of histone-modifying genes in non-Hodgkin lymphoma. Nature. 2011 Jul 27;476(7360):298-303. doi: 10.1038/nature10351. PMID: 21796119; PMCID: PMC3210554.*## CD58 Expression
1
+![image](images/gene_expression/CD58_by_pathology.svg)
CD70.md
... ...
@@ -54,3 +54,5 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/C
54 54
1. *Nie M, Ren W, Ye X, Berglund M, Wang X, Fjordén K, Du L, Giannoula Y, Lei D, Su W, Li W, Liu D, Linderoth J, Jiang C, Bao H, Jiang W, Huang H, Hou Y, Zhu S, Enblad G, Jerkeman M, Wu K, Zhang H, Amini RM, Li ZM, Pan-Hammarström Q. The dual role of CD70 in B-cell lymphomagenesis. Clin Transl Med. 2022 Dec;12(12):e1118. doi: 10.1002/ctm2.1118. PMID: 36471481; PMCID: PMC9722974.*
55 55
2. *Wright GW, Huang DW, Phelan JD, Coulibaly ZA, Roulland S, Young RM, Wang JQ, Schmitz R, Morin RD, Tang J, Jiang A, Bagaev A, Plotnikova O, Kotlov N, Johnson CA, Wilson WH, Scott DW, Staudt LM. A Probabilistic Classification Tool for Genetic Subtypes of Diffuse Large B Cell Lymphoma with Therapeutic Implications. Cancer Cell. 2020 Apr 13;37(4):551-568.e14. doi: 10.1016/j.ccell.2020.03.015. PMID: 32289277; PMCID: PMC8459709.*
56 56
3. *Mandato, E., Calabretta, E., Bai, G., Song, L., Sun, Y., Shanmugam, V., Paczkowska, J., Choi, I., Redd, R., Tang, M., Lawton, L., Neuberg, D., Rodig, S., Michor, F., Zhang, B., & Shipp, M. (2022). Abstract A38: Cd70 genetic perturbation limits the development of an effective CD8+ T-cell immune response to Bcl6-driven diffuse large B-cell lymphoma. Blood Cancer Discovery. https://doi.org/10.1158/2643-3249.lymphoma22-a38.*
57
+## CD70 Expression
58
+![image](images/gene_expression/CD70_by_pathology.svg)
CD74.md
... ...
@@ -40,3 +40,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
40 40
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/CD74.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/CD74_hg38.html)
41 41
42 42
![image](images/proteinpaint/CD74.svg)
43
+## CD74 Expression
44
+![image](images/gene_expression/CD74_by_pathology.svg)
CD79A.md
... ...
@@ -41,3 +41,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
41 41
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/CD79A.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/CD79A_hg38.html)
42 42
43 43
![image](images/proteinpaint/CD79A.svg)
44
+## CD79A Expression
45
+![image](images/gene_expression/CD79A_by_pathology.svg)
CD79B.md
... ...
@@ -67,4 +67,5 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/C
67 67
1. *Wright GW, Huang DW, Phelan JD, Coulibaly ZA, Roulland S, Young RM, Wang JQ, Schmitz R, Morin RD, Tang J, Jiang A, Bagaev A, Plotnikova O, Kotlov N, Johnson CA, Wilson WH, Scott DW, Staudt LM. A Probabilistic Classification Tool for Genetic Subtypes of Diffuse Large B Cell Lymphoma with Therapeutic Implications. Cancer Cell. 2020 Apr 13;37(4):551-568.e14. doi: 10.1016/j.ccell.2020.03.015. PMID: 32289277; PMCID: PMC8459709.*
68 68
2. *Flümann R, Hansen J, Meinel J, Pfeiffer P, Goldfarb Wittkopf H, Lütz A, Wirtz J, Möllmann M, Zhou T, Tabatabai A, Lohmann T, Jauch M, Beleggia F, Pelzer B, Ullrich F, Höfmann S, Arora A, Persigehl T, Büttner R, von Tresckow B, Klein S, Jachimowicz RD, Reinhardt HC, Knittel G. An inducible Cd79b mutation confers ibrutinib sensitivity in mouse models of Myd88-driven diffuse large B-cell lymphoma. Blood Adv. 2024 Mar 12;8(5):1063-1074. doi: 10.1182/bloodadvances.2023011213. PMID: 38060829; PMCID: PMC10907402.*
69 69
3. *Wilson WH, Wright GW, Huang DW, Hodkinson B, Balasubramanian S, Fan Y, Vermeulen J, Shreeve M, Staudt LM. Effect of ibrutinib with R-CHOP chemotherapy in genetic subtypes of DLBCL. Cancer Cell. 2021 Dec 13;39(12):1643-1653.e3. doi: 10.1016/j.ccell.2021.10.006. Epub 2021 Nov 4. PMID: 34739844; PMCID: PMC8722194.*
70
-4. *Kim Y, Ju H, Kim DH, Yoo HY, Kim SJ, Kim WS, Ko YH. CD79B and MYD88 mutations in diffuse large B-cell lymphoma. Hum Pathol. 2014 Mar;45(3):556-64. doi: 10.1016/j.humpath.2013.10.023. Epub 2013 Oct 31. PMID: 24444466.*
... ...
\ No newline at end of file
0
+4. *Kim Y, Ju H, Kim DH, Yoo HY, Kim SJ, Kim WS, Ko YH. CD79B and MYD88 mutations in diffuse large B-cell lymphoma. Hum Pathol. 2014 Mar;45(3):556-64. doi: 10.1016/j.humpath.2013.10.023. Epub 2013 Oct 31. PMID: 24444466.*## CD79B Expression
1
+![image](images/gene_expression/CD79B_by_pathology.svg)
CD83.md
... ...
@@ -53,4 +53,5 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/C
53 53
## References
54 54
1. *Lechmann M, Zinser E, Golka A, Steinkasserer A. Role of CD83 in the immunomodulation of dendritic cells. Int Arch Allergy Immunol. 2002 Oct;129(2):113-8. doi: 10.1159/000065883. PMID: 12403928.*
55 55
2. *Morin RD, Mungall K, Pleasance E, Mungall AJ, Goya R, Huff RD, Scott DW, Ding J, Roth A, Chiu R, Corbett RD, Chan FC, Mendez-Lago M, Trinh DL, Bolger-Munro M, Taylor G, Hadj Khodabakhshi A, Ben-Neriah S, Pon J, Meissner B, Woolcock B, Farnoud N, Rogic S, Lim EL, Johnson NA, Shah S, Jones S, Steidl C, Holt R, Birol I, Moore R, Connors JM, Gascoyne RD, Marra MA. Mutational and structural analysis of diffuse large B-cell lymphoma using whole-genome sequencing. Blood. 2013 Aug 15;122(7):1256-65. doi: 10.1182/blood-2013-02-483727. Epub 2013 May 22. PMID: 23699601; PMCID: PMC3744992.*
56
-3. *Russler-Germain DA, Krysiak K, Ramirez C, Mosior M, Watkins MP, Gomez F, Skidmore ZL, Trani L, Gao F, Geyer S, Cashen AF, Mehta-Shah N, Kahl BS, Bartlett NL, Alderuccio JP, Lossos IS, Ondrejka SL, Hsi ED, Martin P, Leonard JP, Griffith M, Griffith OL, Fehniger TA. Mutations associated with progression in follicular lymphoma predict inferior outcomes at diagnosis: Alliance A151303. Blood Adv. 2023 Sep 26;7(18):5524-5539. doi: 10.1182/bloodadvances.2023010779. PMID: 37493986; PMCID: PMC10514406.*
... ...
\ No newline at end of file
0
+3. *Russler-Germain DA, Krysiak K, Ramirez C, Mosior M, Watkins MP, Gomez F, Skidmore ZL, Trani L, Gao F, Geyer S, Cashen AF, Mehta-Shah N, Kahl BS, Bartlett NL, Alderuccio JP, Lossos IS, Ondrejka SL, Hsi ED, Martin P, Leonard JP, Griffith M, Griffith OL, Fehniger TA. Mutations associated with progression in follicular lymphoma predict inferior outcomes at diagnosis: Alliance A151303. Blood Adv. 2023 Sep 26;7(18):5524-5539. doi: 10.1182/bloodadvances.2023010779. PMID: 37493986; PMCID: PMC10514406.*## CD83 Expression
1
+![image](images/gene_expression/CD83_by_pathology.svg)
CDC73.md
... ...
@@ -39,3 +39,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
39 39
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/CDC73.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/CDC73_hg38.html)
40 40
41 41
![image](images/proteinpaint/CDC73.svg)
42
+## CDC73 Expression
43
+![image](images/gene_expression/CDC73_by_pathology.svg)
CDH17.md
... ...
@@ -34,3 +34,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
34 34
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/CDH17.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/CDH17_hg38.html)
35 35
36 36
![image](images/proteinpaint/CDH17.svg)
37
+## CDH17 Expression
38
+![image](images/gene_expression/CDH17_by_pathology.svg)
CDH8.md
... ...
@@ -32,3 +32,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
32 32
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/CDH8.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/CDH8_hg38.html)
33 33
34 34
![image](images/proteinpaint/CDH8.svg)
35
+## CDH8 Expression
36
+![image](images/gene_expression/CDH8_by_pathology.svg)
CDH9.md
... ...
@@ -35,3 +35,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
35 35
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/CDH9.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/CDH9_hg38.html)
36 36
37 37
![image](images/proteinpaint/CDH9.svg)
38
+## CDH9 Expression
39
+![image](images/gene_expression/CDH9_by_pathology.svg)
CDKN2A.md
... ...
@@ -51,4 +51,5 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/C
51 51
![image](images/proteinpaint/CDKN2A.svg)
52 52
53 53
## References
54
-1. *Guney S, Jardin F, Bertrand P, Mareschal S, Parmentier F, Picquenot JM, Tilly H, Bastard C. Several mechanisms lead to the inactivation of the CDKN2A (P16), P14ARF, or CDKN2B (P15) genes in the GCB and ABC molecular DLBCL subtypes. Genes Chromosomes Cancer. 2012 Sep;51(9):858-67. doi: 10.1002/gcc.21970. Epub 2012 May 23. PMID: 22619049.*
... ...
\ No newline at end of file
0
+1. *Guney S, Jardin F, Bertrand P, Mareschal S, Parmentier F, Picquenot JM, Tilly H, Bastard C. Several mechanisms lead to the inactivation of the CDKN2A (P16), P14ARF, or CDKN2B (P15) genes in the GCB and ABC molecular DLBCL subtypes. Genes Chromosomes Cancer. 2012 Sep;51(9):858-67. doi: 10.1002/gcc.21970. Epub 2012 May 23. PMID: 22619049.*## CDKN2A Expression
1
+![image](images/gene_expression/CDKN2A_by_pathology.svg)
CDKN2C.md
... ...
@@ -34,3 +34,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
34 34
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/CDKN2C.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/CDKN2C_hg38.html)
35 35
36 36
![image](images/proteinpaint/CDKN2C.svg)
37
+## CDKN2C Expression
38
+![image](images/gene_expression/CDKN2C_by_pathology.svg)
CHD1.md
... ...
@@ -35,3 +35,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
35 35
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/CHD1.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/CHD1_hg38.html)
36 36
37 37
![image](images/proteinpaint/CHD1.svg)
38
+## CHD1 Expression
39
+![image](images/gene_expression/CHD1_by_pathology.svg)
CHD4.md
... ...
@@ -34,3 +34,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
34 34
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/CHD4.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/CHD4_hg38.html)
35 35
36 36
![image](images/proteinpaint/CHD4.svg)
37
+## CHD4 Expression
38
+![image](images/gene_expression/CHD4_by_pathology.svg)
CHD8.md
... ...
@@ -39,3 +39,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
39 39
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/CHD8.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/CHD8_hg38.html)
40 40
41 41
![image](images/proteinpaint/CHD8.svg)
42
+## CHD8 Expression
43
+![image](images/gene_expression/CHD8_by_pathology.svg)
CHST2.md
... ...
@@ -35,3 +35,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
35 35
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/CHST2.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/CHST2_hg38.html)
36 36
37 37
![image](images/proteinpaint/CHST2.svg)
38
+## CHST2 Expression
39
+![image](images/gene_expression/CHST2_by_pathology.svg)
CIITA.md
... ...
@@ -46,4 +46,5 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/C
46 46
## References
47 47
1. *Mottok, A., Woolcock, B., Chan, F., Tong, K., Chong, L., Farinha, P., Telenius, A., Chavez, E., Ramchandani, S., Drake, M., Boyle, M., Ben-Neriah, S., Scott, D., Rimsza, L., Siebert, R., Gascoyne, R., & Steidl, C. (2015). Genomic Alterations in CIITA Are Frequent in Primary Mediastinal Large B Cell Lymphoma and Are Associated with Diminished MHC Class II Expression.. Cell reports, 13 7, 1418-1431 . https://doi.org/10.1016/j.celrep.2015.10.008.*
48 48
2. *Sarah T Wilkinson, Diane R Fernandez, Shawn P Murphy, Wing C. Chan, Randy D. Gascoyne, Elias Campo, Elaine S. Jaffe, Louis M. Staudt, Jan Delabie, Andreas Rosenwald, Lisa M Rimsza; Loss of CIITA and MHC Class II Expression in Diffuse Large B-Cell Lymphoma Is Not Explained by Methylation of CIITA Promoters III and IV.. Blood 2008; 112 (11): 1786. doi: https://doi.org/10.1182/blood.V112.11.1786.1786*
49
-3. *Morin RD, Mendez-Lago M, Mungall AJ, Goya R, Mungall KL, Corbett RD, Johnson NA, Severson TM, Chiu R, Field M, Jackman S, Krzywinski M, Scott DW, Trinh DL, Tamura-Wells J, Li S, Firme MR, Rogic S, Griffith M, Chan S, Yakovenko O, Meyer IM, Zhao EY, Smailus D, Moksa M, Chittaranjan S, Rimsza L, Brooks-Wilson A, Spinelli JJ, Ben-Neriah S, Meissner B, Woolcock B, Boyle M, McDonald H, Tam A, Zhao Y, Delaney A, Zeng T, Tse K, Butterfield Y, Birol I, Holt R, Schein J, Horsman DE, Moore R, Jones SJ, Connors JM, Hirst M, Gascoyne RD, Marra MA. Frequent mutation of histone-modifying genes in non-Hodgkin lymphoma. Nature. 2011 Jul 27;476(7360):298-303. doi: 10.1038/nature10351. PMID: 21796119; PMCID: PMC3210554.*
... ...
\ No newline at end of file
0
+3. *Morin RD, Mendez-Lago M, Mungall AJ, Goya R, Mungall KL, Corbett RD, Johnson NA, Severson TM, Chiu R, Field M, Jackman S, Krzywinski M, Scott DW, Trinh DL, Tamura-Wells J, Li S, Firme MR, Rogic S, Griffith M, Chan S, Yakovenko O, Meyer IM, Zhao EY, Smailus D, Moksa M, Chittaranjan S, Rimsza L, Brooks-Wilson A, Spinelli JJ, Ben-Neriah S, Meissner B, Woolcock B, Boyle M, McDonald H, Tam A, Zhao Y, Delaney A, Zeng T, Tse K, Butterfield Y, Birol I, Holt R, Schein J, Horsman DE, Moore R, Jones SJ, Connors JM, Hirst M, Gascoyne RD, Marra MA. Frequent mutation of histone-modifying genes in non-Hodgkin lymphoma. Nature. 2011 Jul 27;476(7360):298-303. doi: 10.1038/nature10351. PMID: 21796119; PMCID: PMC3210554.*## CIITA Expression
1
+![image](images/gene_expression/CIITA_by_pathology.svg)
CILP.md
... ...
@@ -32,3 +32,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
32 32
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/CILP.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/CILP_hg38.html)
33 33
34 34
![image](images/proteinpaint/CILP.svg)
35
+## CILP Expression
36
+![image](images/gene_expression/CILP_by_pathology.svg)
CNOT2.md
... ...
@@ -35,3 +35,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
35 35
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/CNOT2.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/CNOT2_hg38.html)
36 36
37 37
![image](images/proteinpaint/CNOT2.svg)
38
+## CNOT2 Expression
39
+![image](images/gene_expression/CNOT2_by_pathology.svg)
CNTNAP5.md
... ...
@@ -35,3 +35,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
35 35
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/CNTNAP5.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/CNTNAP5_hg38.html)
36 36
37 37
![image](images/proteinpaint/CNTNAP5.svg)
38
+## CNTNAP5 Expression
39
+![image](images/gene_expression/CNTNAP5_by_pathology.svg)
COL11A1.md
... ...
@@ -32,3 +32,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
32 32
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/COL11A1.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/COL11A1_hg38.html)
33 33
34 34
![image](images/proteinpaint/COL11A1.svg)
35
+## COL11A1 Expression
36
+![image](images/gene_expression/COL11A1_by_pathology.svg)
COL16A1.md
... ...
@@ -32,3 +32,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
32 32
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/COL16A1.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/COL16A1_hg38.html)
33 33
34 34
![image](images/proteinpaint/COL16A1.svg)
35
+## COL16A1 Expression
36
+![image](images/gene_expression/COL16A1_by_pathology.svg)
COL4A2.md
... ...
@@ -34,3 +34,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
34 34
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/COL4A2.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/COL4A2_hg38.html)
35 35
36 36
![image](images/proteinpaint/COL4A2.svg)
37
+## COL4A2 Expression
38
+![image](images/gene_expression/COL4A2_by_pathology.svg)
COQ7.md
... ...
@@ -35,3 +35,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
35 35
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/COQ7.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/COQ7_hg38.html)
36 36
37 37
![image](images/proteinpaint/COQ7.svg)
38
+## COQ7 Expression
39
+![image](images/gene_expression/COQ7_by_pathology.svg)
CPNE8.md
... ...
@@ -32,3 +32,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
32 32
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/CPNE8.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/CPNE8_hg38.html)
33 33
34 34
![image](images/proteinpaint/CPNE8.svg)
35
+## CPNE8 Expression
36
+![image](images/gene_expression/CPNE8_by_pathology.svg)
CPXM2.md
... ...
@@ -34,3 +34,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
34 34
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/CPXM2.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/CPXM2_hg38.html)
35 35
36 36
![image](images/proteinpaint/CPXM2.svg)
37
+## CPXM2 Expression
38
+![image](images/gene_expression/CPXM2_by_pathology.svg)
CREBBP.md
... ...
@@ -77,3 +77,5 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/C
77 77
## References
78 78
1. *Pasqualucci, L., Dominguez-Sola, D., Chiarenza, A., Fabbri, G., Grunn, A., Trifonov, V., Kasper, L., Lerach, S., Tang, H., Ma, J., Rossi, D., Chadburn, A., Murty, V., Mullighan, C., Gaidano, G., Rabadán, R., Brindle, P., & Dalla-Favera, R. (2010). Inactivating mutations of acetyltransferase genes in B-cell lymphoma. Nature, 471, 189 - 195. https://doi.org/10.1038/nature09730.*
79 79
2. *Dreval K, Hilton LK, Cruz M, Shaalan H, Ben-Neriah S, Boyle M, Collinge B, Coyle KM, Duns G, Farinha P, Grande BM, Meissner B, Pararajalingam P, Rushton CK, Slack GW, Wong J, Mungall AJ, Marra MA, Connors JM, Steidl C, Scott DW, Morin RD. Genetic subdivisions of follicular lymphoma defined by distinct coding and noncoding mutation patterns. Blood. 2023 Aug 10;142(6):561-573. doi: 10.1182/blood.2022018719. PMID: 37084389; PMCID: PMC10644066.*
80
+## CREBBP Expression
81
+![image](images/gene_expression/CREBBP_by_pathology.svg)
CRIP1.md
... ...
@@ -35,3 +35,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
35 35
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/CRIP1.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/CRIP1_hg38.html)
36 36
37 37
![image](images/proteinpaint/CRIP1.svg)
38
+## CRIP1 Expression
39
+![image](images/gene_expression/CRIP1_by_pathology.svg)
CTCF.md
... ...
@@ -34,3 +34,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
34 34
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/CTCF.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/CTCF_hg38.html)
35 35
36 36
![image](images/proteinpaint/CTCF.svg)
37
+## CTCF Expression
38
+![image](images/gene_expression/CTCF_by_pathology.svg)
CTNNA2.md
... ...
@@ -32,3 +32,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
32 32
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/CTNNA2.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/CTNNA2_hg38.html)
33 33
34 34
![image](images/proteinpaint/CTNNA2.svg)
35
+## CTNNA2 Expression
36
+![image](images/gene_expression/CTNNA2_by_pathology.svg)
CTSS.md
... ...
@@ -37,3 +37,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
37 37
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/CTSS.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/CTSS_hg38.html)
38 38
39 39
![image](images/proteinpaint/CTSS.svg)
40
+## CTSS Expression
41
+![image](images/gene_expression/CTSS_by_pathology.svg)
CXCR4.md
... ...
@@ -50,3 +50,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
50 50
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/CXCR4.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/CXCR4_hg38.html)
51 51
52 52
![image](images/proteinpaint/CXCR4.svg)
53
+## CXCR4 Expression
54
+![image](images/gene_expression/CXCR4_by_pathology.svg)
CXCR5.md
... ...
@@ -42,3 +42,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
42 42
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/CXCR5.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/CXCR5_hg38.html)
43 43
44 44
![image](images/proteinpaint/CXCR5.svg)
45
+## CXCR5 Expression
46
+![image](images/gene_expression/CXCR5_by_pathology.svg)
CYB5D1.md
... ...
@@ -34,3 +34,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
34 34
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/CYB5D1.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/CYB5D1_hg38.html)
35 35
36 36
![image](images/proteinpaint/CYB5D1.svg)
37
+## CYB5D1 Expression
38
+![image](images/gene_expression/CYB5D1_by_pathology.svg)
CYP2A6.md
... ...
@@ -32,3 +32,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
32 32
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/CYP2A6.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/CYP2A6_hg38.html)
33 33
34 34
![image](images/proteinpaint/CYP2A6.svg)
35
+## CYP2A6 Expression
36
+![image](images/gene_expression/CYP2A6_by_pathology.svg)
CYP4F22.md
... ...
@@ -34,3 +34,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
34 34
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/CYP4F22.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/CYP4F22_hg38.html)
35 35
36 36
![image](images/proteinpaint/CYP4F22.svg)
37
+## CYP4F22 Expression
38
+![image](images/gene_expression/CYP4F22_by_pathology.svg)
DAZAP1.md
... ...
@@ -51,4 +51,5 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/D
51 51
![image](images/proteinpaint/DAZAP1.svg)
52 52
53 53
## References
54
-1. *Pararajalingam P, Coyle KM, Arthur SE, Thomas N, Alcaide M, Meissner B, Boyle M, Qureshi Q, Grande BM, Rushton C, Slack GW, Mungall AJ, Tam CS, Agarwal R, Dawson SJ, Lenz G, Balasubramanian S, Gascoyne RD, Steidl C, Connors J, Villa D, Audas TE, Marra MA, Johnson NA, Scott DW, Morin RD. Coding and noncoding drivers of mantle cell lymphoma identified through exome and genome sequencing. Blood. 2020 Jul 30;136(5):572-584. doi: 10.1182/blood.2019002385. PMID: 32160292; PMCID: PMC7440974.*
... ...
\ No newline at end of file
0
+1. *Pararajalingam P, Coyle KM, Arthur SE, Thomas N, Alcaide M, Meissner B, Boyle M, Qureshi Q, Grande BM, Rushton C, Slack GW, Mungall AJ, Tam CS, Agarwal R, Dawson SJ, Lenz G, Balasubramanian S, Gascoyne RD, Steidl C, Connors J, Villa D, Audas TE, Marra MA, Johnson NA, Scott DW, Morin RD. Coding and noncoding drivers of mantle cell lymphoma identified through exome and genome sequencing. Blood. 2020 Jul 30;136(5):572-584. doi: 10.1182/blood.2019002385. PMID: 32160292; PMCID: PMC7440974.*## DAZAP1 Expression
1
+![image](images/gene_expression/DAZAP1_by_pathology.svg)
DCAF6.md
... ...
@@ -35,3 +35,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
35 35
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/DCAF6.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/DCAF6_hg38.html)
36 36
37 37
![image](images/proteinpaint/DCAF6.svg)
38
+## DCAF6 Expression
39
+![image](images/gene_expression/DCAF6_by_pathology.svg)
DDX10.md
... ...
@@ -35,3 +35,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
35 35
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/DDX10.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/DDX10_hg38.html)
36 36
37 37
![image](images/proteinpaint/DDX10.svg)
38
+## DDX10 Expression
39
+![image](images/gene_expression/DDX10_by_pathology.svg)
DDX3X.md
... ...
@@ -54,3 +54,5 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/D
54 54
2. *Lacroix, M., Beauchemin, H., & Möröy, T. (2022). DDX3: a relevant therapeutic target for lymphoma?. Expert Opinion on Therapeutic Targets, 26, 1037 - 1040. https://doi.org/10.1080/14728222.2022.2166830.*
55 55
3. *Gong, C., Krupka, J., Gao, J., Grigoropoulos, N., Giotopoulos, G., Asby, R., Screen, M., Usheva, Z., Cucco, F., Barrans, S., Painter, D., Zaini, N., Haupl, B., Bornelöv, S., Mozos, I., Meng, W., Zhou, P., Blain, A., Forde, S., Matthews, J., Tan, M., Burke, G., Sze, S., Beer, P., Burton, C., Campbell, P., Rand, V., Turner, S., Ule, J., Roman, E., Tooze, R., Oellerich, T., Huntly, B., Turner, M., Du, M., Samarajiwa, S., & Hodson, D. (2021). Sequential inverse dysregulation of the RNA helicases DDX3X and DDX3Y facilitates MYC-driven lymphomagenesis.. Molecular cell. https://doi.org/10.1016/j.molcel.2021.07.041.*
56 56
57
+## DDX3X Expression
58
+![image](images/gene_expression/DDX3X_by_pathology.svg)
DHDH.md
... ...
@@ -32,3 +32,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
32 32
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/DHDH.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/DHDH_hg38.html)
33 33
34 34
![image](images/proteinpaint/DHDH.svg)
35
+## DHDH Expression
36
+![image](images/gene_expression/DHDH_by_pathology.svg)
DHX15.md
... ...
@@ -32,3 +32,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
32 32
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/DHX15.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/DHX15_hg38.html)
33 33
34 34
![image](images/proteinpaint/DHX15.svg)
35
+## DHX15 Expression
36
+![image](images/gene_expression/DHX15_by_pathology.svg)
DHX16.md
... ...
@@ -35,3 +35,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
35 35
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/DHX16.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/DHX16_hg38.html)
36 36
37 37
![image](images/proteinpaint/DHX16.svg)
38
+## DHX16 Expression
39
+![image](images/gene_expression/DHX16_by_pathology.svg)
DICER1.md
... ...
@@ -38,3 +38,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
38 38
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/DICER1.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/DICER1_hg38.html)
39 39
40 40
![image](images/proteinpaint/DICER1.svg)
41
+## DICER1 Expression
42
+![image](images/gene_expression/DICER1_by_pathology.svg)
DLBCL.md
... ...
@@ -1 +1,2 @@
1
-[EZH2](EZH2)
... ...
\ No newline at end of file
0
+[EZH2](EZH2)## DLBCL Expression
1
+![image](images/gene_expression/DLBCL_by_pathology.svg)
DLC1.md
... ...
@@ -32,3 +32,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
32 32
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/DLC1.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/DLC1_hg38.html)
33 33
34 34
![image](images/proteinpaint/DLC1.svg)
35
+## DLC1 Expression
36
+![image](images/gene_expression/DLC1_by_pathology.svg)
DLGAP1.md
... ...
@@ -34,3 +34,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
34 34
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/DLGAP1.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/DLGAP1_hg38.html)
35 35
36 36
![image](images/proteinpaint/DLGAP1.svg)
37
+## DLGAP1 Expression
38
+![image](images/gene_expression/DLGAP1_by_pathology.svg)
DNAH5.md
... ...
@@ -35,3 +35,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
35 35
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/DNAH5.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/DNAH5_hg38.html)
36 36
37 37
![image](images/proteinpaint/DNAH5.svg)
38
+## DNAH5 Expression
39
+![image](images/gene_expression/DNAH5_by_pathology.svg)
DNM2.md
... ...
@@ -41,3 +41,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
41 41
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/DNM2.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/DNM2_hg38.html)
42 42
43 43
![image](images/proteinpaint/DNM2.svg)
44
+## DNM2 Expression
45
+![image](images/gene_expression/DNM2_by_pathology.svg)
DNMT1.md
... ...
@@ -34,3 +34,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
34 34
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/DNMT1.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/DNMT1_hg38.html)
35 35
36 36
![image](images/proteinpaint/DNMT1.svg)
37
+## DNMT1 Expression
38
+![image](images/gene_expression/DNMT1_by_pathology.svg)
DNMT3A.md
... ...
@@ -35,3 +35,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
35 35
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/DNMT3A.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/DNMT3A_hg38.html)
36 36
37 37
![image](images/proteinpaint/DNMT3A.svg)
38
+## DNMT3A Expression
39
+![image](images/gene_expression/DNMT3A_by_pathology.svg)
DOCK1.md
... ...
@@ -35,3 +35,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
35 35
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/DOCK1.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/DOCK1_hg38.html)
36 36
37 37
![image](images/proteinpaint/DOCK1.svg)
38
+## DOCK1 Expression
39
+![image](images/gene_expression/DOCK1_by_pathology.svg)
DSG4.md
... ...
@@ -35,3 +35,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
35 35
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/DSG4.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/DSG4_hg38.html)
36 36
37 37
![image](images/proteinpaint/DSG4.svg)
38
+## DSG4 Expression
39
+![image](images/gene_expression/DSG4_by_pathology.svg)
DTX1.md
... ...
@@ -99,4 +99,5 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/D
99 99
100 100
## References
101 101
1. *Wright GW, Huang DW, Phelan JD, Coulibaly ZA, Roulland S, Young RM, Wang JQ, Schmitz R, Morin RD, Tang J, Jiang A, Bagaev A, Plotnikova O, Kotlov N, Johnson CA, Wilson WH, Scott DW, Staudt LM. A Probabilistic Classification Tool for Genetic Subtypes of Diffuse Large B Cell Lymphoma with Therapeutic Implications. Cancer Cell. 2020 Apr 13;37(4):551-568.e14. doi: 10.1016/j.ccell.2020.03.015. PMID: 32289277; PMCID: PMC8459709.*
102
-2. *de Miranda NF, Georgiou K, Chen L, Wu C, Gao Z, Zaravinos A, Lisboa S, Enblad G, Teixeira MR, Zeng Y, Peng R, Pan-Hammarström Q. Exome sequencing reveals novel mutation targets in diffuse large B-cell lymphomas derived from Chinese patients. Blood. 2014 Oct 16;124(16):2544-53. doi: 10.1182/blood-2013-12-546309. Epub 2014 Aug 29. PMID: 25171927; PMCID: PMC4199956.*
... ...
\ No newline at end of file
0
+2. *de Miranda NF, Georgiou K, Chen L, Wu C, Gao Z, Zaravinos A, Lisboa S, Enblad G, Teixeira MR, Zeng Y, Peng R, Pan-Hammarström Q. Exome sequencing reveals novel mutation targets in diffuse large B-cell lymphomas derived from Chinese patients. Blood. 2014 Oct 16;124(16):2544-53. doi: 10.1182/blood-2013-12-546309. Epub 2014 Aug 29. PMID: 25171927; PMCID: PMC4199956.*## DTX1 Expression
1
+![image](images/gene_expression/DTX1_by_pathology.svg)
DUSP2.md
... ...
@@ -65,3 +65,5 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/D
65 65
1. *Hartmann, S., Schuhmacher, B., Rausch, T., Fuller, L., Döring, C., Weniger, M., Lollies, A., Weiser, C., Thurner, L., Rengstl, B., Brunnberg, U., Vornanen, M., Pfreundschuh, M., Beneš, V., Küppers, R., Newrzela, S., & Hansmann, M. (2016). Highly recurrent mutations of SGK1, DUSP2 and JUNB in nodular lymphocyte predominant Hodgkin lymphoma. Leukemia, 30, 844-853. https://doi.org/10.1038/leu.2015.328.*
66 66
2. *Schuhmacher, B., Bein, J., Rausch, T., Beneš, V., Tousseyn, T., Vornanen, M., Ponzoni, M., Thurner, L., Gascoyne, R., Steidl, C., Küppers, R., Hansmann, M., & Hartmann, S. (2018). JUNB, DUSP2, SGK1, SOCS1 and CREBBP are frequently mutated in T-cell/histiocyte-rich large B-cell lymphoma. Haematologica, 104, 330 - 337. https://doi.org/10.3324/haematol.2018.203224.*
67 67
3. *Schmitz R, Wright GW, Huang DW, Johnson CA, Phelan JD, Wang JQ, Roulland S, Kasbekar M, Young RM, Shaffer AL, Hodson DJ, Xiao W, Yu X, Yang Y, Zhao H, Xu W, Liu X, Zhou B, Du W, Chan WC, Jaffe ES, Gascoyne RD, Connors JM, Campo E, Lopez-Guillermo A, Rosenwald A, Ott G, Delabie J, Rimsza LM, Tay Kuang Wei K, Zelenetz AD, Leonard JP, Bartlett NL, Tran B, Shetty J, Zhao Y, Soppet DR, Pittaluga S, Wilson WH, Staudt LM. Genetics and Pathogenesis of Diffuse Large B-Cell Lymphoma. N Engl J Med. 2018 Apr 12;378(15):1396-1407. doi: 10.1056/NEJMoa1801445. PMID: 29641966; PMCID: PMC6010183.*
68
+## DUSP2 Expression
69
+![image](images/gene_expression/DUSP2_by_pathology.svg)
E2F2.md
... ...
@@ -34,3 +34,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
34 34
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/E2F2.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/E2F2_hg38.html)
35 35
36 36
![image](images/proteinpaint/E2F2.svg)
37
+## E2F2 Expression
38
+![image](images/gene_expression/E2F2_by_pathology.svg)
EBF1.md
... ...
@@ -67,3 +67,5 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/E
67 67
68 68
## References
69 69
1. *Györy I, Boller S, Nechanitzky R, Mandel E, Pott S, Liu E, Grosschedl R. Transcription factor Ebf1 regulates differentiation stage-specific signaling, proliferation, and survival of B cells. Genes Dev. 2012 Apr 1;26(7):668-82. doi: 10.1101/gad.187328.112. Epub 2012 Mar 19. PMID: 22431510; PMCID: PMC3323878.*
70
+## EBF1 Expression
71
+![image](images/gene_expression/EBF1_by_pathology.svg)
EDNRB.md
... ...
@@ -34,3 +34,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
34 34
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/EDNRB.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/EDNRB_hg38.html)
35 35
36 36
![image](images/proteinpaint/EDNRB.svg)
37
+## EDNRB Expression
38
+![image](images/gene_expression/EDNRB_by_pathology.svg)
EEF1A1.md
... ...
@@ -53,3 +53,5 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/E
53 53
## References
54 54
1. *Hübschmann D, Kleinheinz K, Wagener R, Bernhart SH, López C, Toprak UH, Sungalee S, Ishaque N, Kretzmer H, Kreuz M, Waszak SM, Paramasivam N, Ammerpohl O, Aukema SM, Beekman R, Bergmann AK, Bieg M, Binder H, Borkhardt A, Borst C, Brors B, Bruns P, Carrillo de Santa Pau E, Claviez A, Doose G, Haake A, Karsch D, Haas S, Hansmann ML, Hoell JI, Hovestadt V, Huang B, Hummel M, Jäger-Schmidt C, Kerssemakers JNA, Korbel JO, Kube D, Lawerenz C, Lenze D, Martens JHA, Ott G, Radlwimmer B, Reisinger E, Richter J, Rico D, Rosenstiel P, Rosenwald A, Schillhabel M, Stilgenbauer S, Stadler PF, Martín-Subero JI, Szczepanowski M, Warsow G, Weniger MA, Zapatka M, Valencia A, Stunnenberg HG, Lichter P, Möller P, Loeffler M, Eils R, Klapper W, Hoffmann S, Trümper L; ICGC MMML-Seq consortium; ICGC DE-Mining consortium; BLUEPRINT consortium; Küppers R, Schlesner M, Siebert R. Mutational mechanisms shaping the coding and noncoding genome of germinal center derived B-cell lymphomas. Leukemia. 2021 Jul;35(7):2002-2016. doi: 10.1038/s41375-021-01251-z. Epub 2021 May 5. PMID: 33953289; PMCID: PMC8257491.*
55 55
2. *Gong T, Shuang Y. Expression and Clinical Value of Eukaryotic Translation Elongation Factor 1A1 (EEF1A1) in Diffuse Large B Cell Lymphoma. Int J Gen Med. 2021 Oct 27;14:7247-7258. doi: 10.2147/IJGM.S324645. PMID: 34737619; PMCID: PMC8559353.*
56
+## EEF1A1 Expression
57
+![image](images/gene_expression/EEF1A1_by_pathology.svg)
EHD1.md
... ...
@@ -31,3 +31,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
31 31
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/EHD1.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/EHD1_hg38.html)
32 32
33 33
![image](images/proteinpaint/EHD1.svg)
34
+## EHD1 Expression
35
+![image](images/gene_expression/EHD1_by_pathology.svg)
EIF2AK3.md
... ...
@@ -32,3 +32,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
32 32
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/EIF2AK3.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/EIF2AK3_hg38.html)
33 33
34 34
![image](images/proteinpaint/EIF2AK3.svg)
35
+## EIF2AK3 Expression
36
+![image](images/gene_expression/EIF2AK3_by_pathology.svg)
EIF2AK4.md
... ...
@@ -32,3 +32,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
32 32
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/EIF2AK4.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/EIF2AK4_hg38.html)
33 33
34 34
![image](images/proteinpaint/EIF2AK4.svg)
35
+## EIF2AK4 Expression
36
+![image](images/gene_expression/EIF2AK4_by_pathology.svg)
EIF2C4.md
... ...
@@ -28,3 +28,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
28 28
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/EIF2C4.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/EIF2C4_hg38.html)
29 29
30 30
![image](images/proteinpaint/EIF2C4.svg)
31
+## EIF2C4 Expression
32
+![image](images/gene_expression/EIF2C4_by_pathology.svg)
EIF4A1.md
... ...
@@ -34,3 +34,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
34 34
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/EIF4A1.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/EIF4A1_hg38.html)
35 35
36 36
![image](images/proteinpaint/EIF4A1.svg)
37
+## EIF4A1 Expression
38
+![image](images/gene_expression/EIF4A1_by_pathology.svg)
EML2.md
... ...
@@ -34,3 +34,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
34 34
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/EML2.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/EML2_hg38.html)
35 35
36 36
![image](images/proteinpaint/EML2.svg)
37
+## EML2 Expression
38
+![image](images/gene_expression/EML2_by_pathology.svg)
ENTPD3.md
... ...
@@ -34,3 +34,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
34 34
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/ENTPD3.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/ENTPD3_hg38.html)
35 35
36 36
![image](images/proteinpaint/ENTPD3.svg)
37
+## ENTPD3 Expression
38
+![image](images/gene_expression/ENTPD3_by_pathology.svg)
EP300.md
... ...
@@ -79,4 +79,5 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/E
79 79
80 80
3. *Nie M, Du L, Ren W, Joung J, Ye X, Shi X, Ciftci S, Liu D, Wu K, Zhang F, Pan-Hammarström Q. Genome-wide CRISPR screens reveal synthetic lethal interaction between CREBBP and EP300 in diffuse large B-cell lymphoma. Cell Death Dis. 2021 Apr 28;12(5):419. doi: 10.1038/s41419-021-03695-8. PMID: 33911074; PMCID: PMC8080727.*
81 81
82
-4. *Morin RD, Mendez-Lago M, Mungall AJ, Goya R, Mungall KL, Corbett RD, Johnson NA, Severson TM, Chiu R, Field M, Jackman S, Krzywinski M, Scott DW, Trinh DL, Tamura-Wells J, Li S, Firme MR, Rogic S, Griffith M, Chan S, Yakovenko O, Meyer IM, Zhao EY, Smailus D, Moksa M, Chittaranjan S, Rimsza L, Brooks-Wilson A, Spinelli JJ, Ben-Neriah S, Meissner B, Woolcock B, Boyle M, McDonald H, Tam A, Zhao Y, Delaney A, Zeng T, Tse K, Butterfield Y, Birol I, Holt R, Schein J, Horsman DE, Moore R, Jones SJ, Connors JM, Hirst M, Gascoyne RD, Marra MA. Frequent mutation of histone-modifying genes in non-Hodgkin lymphoma. Nature. 2011 Jul 27;476(7360):298-303. doi: 10.1038/nature10351. PMID: 21796119; PMCID: PMC3210554.*
... ...
\ No newline at end of file
0
+4. *Morin RD, Mendez-Lago M, Mungall AJ, Goya R, Mungall KL, Corbett RD, Johnson NA, Severson TM, Chiu R, Field M, Jackman S, Krzywinski M, Scott DW, Trinh DL, Tamura-Wells J, Li S, Firme MR, Rogic S, Griffith M, Chan S, Yakovenko O, Meyer IM, Zhao EY, Smailus D, Moksa M, Chittaranjan S, Rimsza L, Brooks-Wilson A, Spinelli JJ, Ben-Neriah S, Meissner B, Woolcock B, Boyle M, McDonald H, Tam A, Zhao Y, Delaney A, Zeng T, Tse K, Butterfield Y, Birol I, Holt R, Schein J, Horsman DE, Moore R, Jones SJ, Connors JM, Hirst M, Gascoyne RD, Marra MA. Frequent mutation of histone-modifying genes in non-Hodgkin lymphoma. Nature. 2011 Jul 27;476(7360):298-303. doi: 10.1038/nature10351. PMID: 21796119; PMCID: PMC3210554.*## EP300 Expression
1
+![image](images/gene_expression/EP300_by_pathology.svg)
EPHB2.md
... ...
@@ -34,3 +34,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
34 34
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/EPHB2.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/EPHB2_hg38.html)
35 35
36 36
![image](images/proteinpaint/EPHB2.svg)
37
+## EPHB2 Expression
38
+![image](images/gene_expression/EPHB2_by_pathology.svg)
EPPK1.md
... ...
@@ -40,3 +40,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
40 40
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/EPPK1.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/EPPK1_hg38.html)
41 41
42 42
![image](images/proteinpaint/EPPK1.svg)
43
+## EPPK1 Expression
44
+![image](images/gene_expression/EPPK1_by_pathology.svg)
ERAP1.md
... ...
@@ -34,3 +34,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
34 34
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/ERAP1.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/ERAP1_hg38.html)
35 35
36 36
![image](images/proteinpaint/ERAP1.svg)
37
+## ERAP1 Expression
38
+![image](images/gene_expression/ERAP1_by_pathology.svg)
ESX1.md
... ...
@@ -32,3 +32,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
32 32
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/ESX1.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/ESX1_hg38.html)
33 33
34 34
![image](images/proteinpaint/ESX1.svg)
35
+## ESX1 Expression
36
+![image](images/gene_expression/ESX1_by_pathology.svg)
ETS1.md
... ...
@@ -73,4 +73,5 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/E
73 73
![image](images/proteinpaint/ETS1.svg)
74 74
75 75
## References
76
-1. *Morin RD, Mendez-Lago M, Mungall AJ, Goya R, Mungall KL, Corbett RD, Johnson NA, Severson TM, Chiu R, Field M, Jackman S, Krzywinski M, Scott DW, Trinh DL, Tamura-Wells J, Li S, Firme MR, Rogic S, Griffith M, Chan S, Yakovenko O, Meyer IM, Zhao EY, Smailus D, Moksa M, Chittaranjan S, Rimsza L, Brooks-Wilson A, Spinelli JJ, Ben-Neriah S, Meissner B, Woolcock B, Boyle M, McDonald H, Tam A, Zhao Y, Delaney A, Zeng T, Tse K, Butterfield Y, Birol I, Holt R, Schein J, Horsman DE, Moore R, Jones SJ, Connors JM, Hirst M, Gascoyne RD, Marra MA. Frequent mutation of histone-modifying genes in non-Hodgkin lymphoma. Nature. 2011 Jul 27;476(7360):298-303. doi: 10.1038/nature10351. PMID: 21796119; PMCID: PMC3210554.*
... ...
\ No newline at end of file
0
+1. *Morin RD, Mendez-Lago M, Mungall AJ, Goya R, Mungall KL, Corbett RD, Johnson NA, Severson TM, Chiu R, Field M, Jackman S, Krzywinski M, Scott DW, Trinh DL, Tamura-Wells J, Li S, Firme MR, Rogic S, Griffith M, Chan S, Yakovenko O, Meyer IM, Zhao EY, Smailus D, Moksa M, Chittaranjan S, Rimsza L, Brooks-Wilson A, Spinelli JJ, Ben-Neriah S, Meissner B, Woolcock B, Boyle M, McDonald H, Tam A, Zhao Y, Delaney A, Zeng T, Tse K, Butterfield Y, Birol I, Holt R, Schein J, Horsman DE, Moore R, Jones SJ, Connors JM, Hirst M, Gascoyne RD, Marra MA. Frequent mutation of histone-modifying genes in non-Hodgkin lymphoma. Nature. 2011 Jul 27;476(7360):298-303. doi: 10.1038/nature10351. PMID: 21796119; PMCID: PMC3210554.*## ETS1 Expression
1
+![image](images/gene_expression/ETS1_by_pathology.svg)
ETV6.md
... ...
@@ -48,3 +48,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
48 48
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/ETV6.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/ETV6_hg38.html)
49 49
50 50
![image](images/proteinpaint/ETV6.svg)
51
+## ETV6 Expression
52
+![image](images/gene_expression/ETV6_by_pathology.svg)
EWSR1.md
... ...
@@ -32,3 +32,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
32 32
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/EWSR1.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/EWSR1_hg38.html)
33 33
34 34
![image](images/proteinpaint/EWSR1.svg)
35
+## EWSR1 Expression
36
+![image](images/gene_expression/EWSR1_by_pathology.svg)
EXOSC6.md
... ...
@@ -34,3 +34,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
34 34
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/EXOSC6.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/EXOSC6_hg38.html)
35 35
36 36
![image](images/proteinpaint/EXOSC6.svg)
37
+## EXOSC6 Expression
38
+![image](images/gene_expression/EXOSC6_by_pathology.svg)
EZH2.md
... ...
@@ -65,4 +65,5 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/E
65 65
1. *Morin RD, Johnson NA, Severson TM, Mungall AJ, An J, Goya R, Paul JE, Boyle M, Woolcock BW, Kuchenbauer F, Yap D, Humphries RK, Griffith OL, Shah S, Zhu H, Kimbara M, Shashkin P, Charlot JF, Tcherpakov M, Corbett R, Tam A, Varhol R, Smailus D, Moksa M, Zhao Y, Delaney A, Qian H, Birol I, Schein J, Moore R, Holt R, Horsman DE, Connors JM, Jones S, Aparicio S, Hirst M, Gascoyne RD, Marra MA. Somatic mutations altering EZH2 (Tyr641) in follicular and diffuse large B-cell lymphomas of germinal-center origin. Nat Genet. 2010 Feb;42(2):181-5. doi: 10.1038/ng.518. Epub 2010 Jan 17. PMID: 20081860; PMCID: PMC2850970.*
66 66
2. *Yap DB, Chu J, Berg T, Schapira M, Cheng SW, Moradian A, Morin RD, Mungall AJ, Meissner B, Boyle M, Marquez VE, Marra MA, Gascoyne RD, Humphries RK, Arrowsmith CH, Morin GB, Aparicio SA. Somatic mutations at EZH2 Y641 act dominantly through a mechanism of selectively altered PRC2 catalytic activity, to increase H3K27 trimethylation. Blood. 2011 Feb 24;117(8):2451-9. doi: 10.1182/blood-2010-11-321208. Epub 2010 Dec 29. PMID: 21190999; PMCID: PMC3062411.*
67 67
3. *Morin RD, Arthur SE, Assouline S. Treating lymphoma is now a bit EZ-er. Blood Adv. 2021 Apr 27;5(8):2256-2263. doi: 10.1182/bloodadvances.2020002773. PMID: 33904892; PMCID: PMC8095133.*
68
-4. *Thomas N, Dreval K, Gerhard DS, Hilton LK, Abramson JS, Ambinder RF, Barta S, Bartlett NL, Bethony J, Bhatia K, Bowen J, Bryan AC, Cesarman E, Casper C, Chadburn A, Cruz M, Dittmer DP, Dyer MA, Farinha P, Gastier-Foster JM, Gerrie AS, Grande BM, Greiner T, Griner NB, Gross TG, Harris NL, Irvin JD, Jaffe ES, Henry D, Huppi R, Leal FE, Lee MS, Martin JP, Martin MR, Mbulaiteye SM, Mitsuyasu R, Morris V, Mullighan CG, Mungall AJ, Mungall K, Mutyaba I, Nokta M, Namirembe C, Noy A, Ogwang MD, Omoding A, Orem J, Ott G, Petrello H, Pittaluga S, Phelan JD, Ramos JC, Ratner L, Reynolds SJ, Rubinstein PG, Sissolak G, Slack G, Soudi S, Swerdlow SH, Traverse-Glehen A, Wilson WH, Wong J, Yarchoan R, ZenKlusen JC, Marra MA, Staudt LM, Scott DW, Morin RD. Genetic subgroups inform on pathobiology in adult and pediatric Burkitt lymphoma. Blood. 2023 Feb 23;141(8):904-916. doi: 10.1182/blood.2022016534. PMID: 36201743; PMCID: PMC10023728.*
... ...
\ No newline at end of file
0
+4. *Thomas N, Dreval K, Gerhard DS, Hilton LK, Abramson JS, Ambinder RF, Barta S, Bartlett NL, Bethony J, Bhatia K, Bowen J, Bryan AC, Cesarman E, Casper C, Chadburn A, Cruz M, Dittmer DP, Dyer MA, Farinha P, Gastier-Foster JM, Gerrie AS, Grande BM, Greiner T, Griner NB, Gross TG, Harris NL, Irvin JD, Jaffe ES, Henry D, Huppi R, Leal FE, Lee MS, Martin JP, Martin MR, Mbulaiteye SM, Mitsuyasu R, Morris V, Mullighan CG, Mungall AJ, Mungall K, Mutyaba I, Nokta M, Namirembe C, Noy A, Ogwang MD, Omoding A, Orem J, Ott G, Petrello H, Pittaluga S, Phelan JD, Ramos JC, Ratner L, Reynolds SJ, Rubinstein PG, Sissolak G, Slack G, Soudi S, Swerdlow SH, Traverse-Glehen A, Wilson WH, Wong J, Yarchoan R, ZenKlusen JC, Marra MA, Staudt LM, Scott DW, Morin RD. Genetic subgroups inform on pathobiology in adult and pediatric Burkitt lymphoma. Blood. 2023 Feb 23;141(8):904-916. doi: 10.1182/blood.2022016534. PMID: 36201743; PMCID: PMC10023728.*## EZH2 Expression
1
+![image](images/gene_expression/EZH2_by_pathology.svg)
EZR.md
... ...
@@ -37,3 +37,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
37 37
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/EZR.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/EZR_hg38.html)
38 38
39 39
![image](images/proteinpaint/EZR.svg)
40
+## EZR Expression
41
+![image](images/gene_expression/EZR_by_pathology.svg)
FAM102A.md
... ...
@@ -37,3 +37,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
37 37
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/FAM102A.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/FAM102A_hg38.html)
38 38
39 39
![image](images/proteinpaint/FAM102A.svg)
40
+## FAM102A Expression
41
+![image](images/gene_expression/FAM102A_by_pathology.svg)
FAM129B.md
... ...
@@ -32,3 +32,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
32 32
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/FAM129B.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/FAM129B_hg38.html)
33 33
34 34
![image](images/proteinpaint/FAM129B.svg)
35
+## FAM129B Expression
36
+![image](images/gene_expression/FAM129B_by_pathology.svg)
FAM38B.md
... ...
@@ -22,3 +22,5 @@
22 22
23 23
> [!NOTE]
24 24
> First described in DLBCL in 2013 by [Morin RD](https://pubmed.ncbi.nlm.nih.gov/23699601)
25
+## FAM38B Expression
26
+![image](images/gene_expression/FAM38B_by_pathology.svg)
FANK1.md
... ...
@@ -37,3 +37,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
37 37
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/FANK1.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/FANK1_hg38.html)
38 38
39 39
![image](images/proteinpaint/FANK1.svg)
40
+## FANK1 Expression
41
+![image](images/gene_expression/FANK1_by_pathology.svg)
FAS.md
... ...
@@ -47,3 +47,5 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/F
47 47
3. *Morin RD, Mendez-Lago M, Mungall AJ, Goya R, Mungall KL, Corbett RD, Johnson NA, Severson TM, Chiu R, Field M, Jackman S, Krzywinski M, Scott DW, Trinh DL, Tamura-Wells J, Li S, Firme MR, Rogic S, Griffith M, Chan S, Yakovenko O, Meyer IM, Zhao EY, Smailus D, Moksa M, Chittaranjan S, Rimsza L, Brooks-Wilson A, Spinelli JJ, Ben-Neriah S, Meissner B, Woolcock B, Boyle M, McDonald H, Tam A, Zhao Y, Delaney A, Zeng T, Tse K, Butterfield Y, Birol I, Holt R, Schein J, Horsman DE, Moore R, Jones SJ, Connors JM, Hirst M, Gascoyne RD, Marra MA. Frequent mutation of histone-modifying genes in non-Hodgkin lymphoma. Nature. 2011 Jul 27;476(7360):298-303. doi: 10.1038/nature10351. PMID: 21796119; PMCID: PMC3210554.*
48 48
4. *Panea RI, Love CL, Shingleton JR, Reddy A, Bailey JA, Moormann AM, Otieno JA, Ong'echa JM, Oduor CI, Schroeder KMS, Masalu N, Chao NJ, Agajanian M, Major MB, Fedoriw Y, Richards KL, Rymkiewicz G, Miles RR, Alobeid B, Bhagat G, Flowers CR, Ondrejka SL, Hsi ED, Choi WWL, Au-Yeung RKH, Hartmann W, Lenz G, Meyerson H, Lin YY, Zhuang Y, Luftig MA, Waldrop A, Dave T, Thakkar D, Sahay H, Li G, Palus BC, Seshadri V, Kim SY, Gascoyne RD, Levy S, Mukhopadyay M, Dunson DB, Dave SS. The whole-genome landscape of Burkitt lymphoma subtypes. Blood. 2019 Nov 7;134(19):1598-1607. doi: 10.1182/blood.2019001880. Erratum in: Blood. 2022 Feb 24;139(8):1256. Erratum in: Blood. 2023 Sep 7;142(10):940. PMID: 31558468; PMCID: PMC6871305.*
49 49
5. *Rys, R., Venkataraman, M., Zeng, J., Mann, K., & Johnson, N. (2019). Fas Mutations in Non-Hodgkin's Lymphoma (NHL): Implications for Disease Progression and Therapeutic Resistance. Blood. https://doi.org/10.1182/blood-2019-130602.*
50
+## FAS Expression
51
+![image](images/gene_expression/FAS_by_pathology.svg)
FAT4.md
... ...
@@ -37,3 +37,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
37 37
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/FAT4.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/FAT4_hg38.html)
38 38
39 39
![image](images/proteinpaint/FAT4.svg)
40
+## FAT4 Expression
41
+![image](images/gene_expression/FAT4_by_pathology.svg)
FBXO11.md
... ...
@@ -67,3 +67,5 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/F
67 67
3. *Thomas N, Dreval K, Gerhard DS, Hilton LK, Abramson JS, Ambinder RF, Barta S, Bartlett NL, Bethony J, Bhatia K, Bowen J, Bryan AC, Cesarman E, Casper C, Chadburn A, Cruz M, Dittmer DP, Dyer MA, Farinha P, Gastier-Foster JM, Gerrie AS, Grande BM, Greiner T, Griner NB, Gross TG, Harris NL, Irvin JD, Jaffe ES, Henry D, Huppi R, Leal FE, Lee MS, Martin JP, Martin MR, Mbulaiteye SM, Mitsuyasu R, Morris V, Mullighan CG, Mungall AJ, Mungall K, Mutyaba I, Nokta M, Namirembe C, Noy A, Ogwang MD, Omoding A, Orem J, Ott G, Petrello H, Pittaluga S, Phelan JD, Ramos JC, Ratner L, Reynolds SJ, Rubinstein PG, Sissolak G, Slack G, Soudi S, Swerdlow SH, Traverse-Glehen A, Wilson WH, Wong J, Yarchoan R, ZenKlusen JC, Marra MA, Staudt LM, Scott DW, Morin RD. Genetic subgroups inform on pathobiology in adult and pediatric Burkitt lymphoma. Blood. 2023 Feb 23;141(8):904-916. doi: 10.1182/blood.2022016534. PMID: 36201743; PMCID: PMC10023728.*
68 68
4. *Pighi, C., Cheong, T., Compagno, M., Patrucco, E., Arigoni, M., Olivero, M., Wang, Q., López, C., Bernhart, S., Grande, B., Poggio, T., Langellotto, F., Bonello, L., Dall’Olio, R., Martínez-Martín, S., Molinaro, L., Celle, P., Whitfield, J., Soucek, L., Voena, C., Calogero, R., Morin, R., Staudt, L., Siebert, R., Zamó, A., & Chiarle, R. (2021). Frequent mutations of FBXO11 highlight BCL6 as a therapeutic target in Burkitt lymphoma.. Blood advances. https://doi.org/10.1182/bloodadvances.2021005682.*
69 69
5. *Hübschmann D, Kleinheinz K, Wagener R, Bernhart SH, López C, Toprak UH, Sungalee S, Ishaque N, Kretzmer H, Kreuz M, Waszak SM, Paramasivam N, Ammerpohl O, Aukema SM, Beekman R, Bergmann AK, Bieg M, Binder H, Borkhardt A, Borst C, Brors B, Bruns P, Carrillo de Santa Pau E, Claviez A, Doose G, Haake A, Karsch D, Haas S, Hansmann ML, Hoell JI, Hovestadt V, Huang B, Hummel M, Jäger-Schmidt C, Kerssemakers JNA, Korbel JO, Kube D, Lawerenz C, Lenze D, Martens JHA, Ott G, Radlwimmer B, Reisinger E, Richter J, Rico D, Rosenstiel P, Rosenwald A, Schillhabel M, Stilgenbauer S, Stadler PF, Martín-Subero JI, Szczepanowski M, Warsow G, Weniger MA, Zapatka M, Valencia A, Stunnenberg HG, Lichter P, Möller P, Loeffler M, Eils R, Klapper W, Hoffmann S, Trümper L; ICGC MMML-Seq consortium; ICGC DE-Mining consortium; BLUEPRINT consortium; Küppers R, Schlesner M, Siebert R. Mutational mechanisms shaping the coding and noncoding genome of germinal center derived B-cell lymphomas. Leukemia. 2021 Jul;35(7):2002-2016. doi: 10.1038/s41375-021-01251-z. Epub 2021 May 5. PMID: 33953289; PMCID: PMC8257491.*
70
+## FBXO11 Expression
71
+![image](images/gene_expression/FBXO11_by_pathology.svg)
FBXW7.md
... ...
@@ -38,3 +38,5 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/F
38 38
## References
39 39
1. *Akhoondi, S., Sun, D., Lehr, N., Apostolidou, S., Klotz, K., Maljukova, A., Cepeda, D., Fiegl, H., Dafou, D., Marth, C., Mueller-Holzner, E., Corcoran, M., Dagnell, M., Nejad, S., Nayer, B., Zali, M., Hansson, J., Egyhazi, S., Petersson, F., Sangfelt, P., Nordgren, H., Grandér, D., Reed, S., Widschwendter, M., Sangfelt, O., & Spruck, C. (2007). FBXW7/hCDC4 is a general tumor suppressor in human cancer.. Cancer research, 67 19, 9006-12 . https://doi.org/10.1158/0008-5472.CAN-07-1320.*
40 40
2. *King, B., Trimarchi, T., Reavie, L., Xu, L., Mullenders, J., Ntziachristos, P., Aranda-Orgilles, B., Pérez-García, A., Shi, J., Vakoc, C., Sandy, P., Shen, S., Ferrando, A., & Aifantis, I. (2013). The Ubiquitin Ligase FBXW7 Modulates Leukemia-Initiating Cell Activity by Regulating MYC Stability. Cell, 153, 1552-1566. https://doi.org/10.1016/j.cell.2013.05.041.*
41
+## FBXW7 Expression
42
+![image](images/gene_expression/FBXW7_by_pathology.svg)
FCRL3.md
... ...
@@ -37,3 +37,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
37 37
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/FCRL3.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/FCRL3_hg38.html)
38 38
39 39
![image](images/proteinpaint/FCRL3.svg)
40
+## FCRL3 Expression
41
+![image](images/gene_expression/FCRL3_by_pathology.svg)
FGFR3.md
... ...
@@ -34,3 +34,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
34 34
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/FGFR3.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/FGFR3_hg38.html)
35 35
36 36
![image](images/proteinpaint/FGFR3.svg)
37
+## FGFR3 Expression
38
+![image](images/gene_expression/FGFR3_by_pathology.svg)
FIP1L1.md
... ...
@@ -31,3 +31,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
31 31
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/FIP1L1.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/FIP1L1_hg38.html)
32 32
33 33
![image](images/proteinpaint/FIP1L1.svg)
34
+## FIP1L1 Expression
35
+![image](images/gene_expression/FIP1L1_by_pathology.svg)
FLYWCH1.md
... ...
@@ -34,3 +34,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
34 34
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/FLYWCH1.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/FLYWCH1_hg38.html)
35 35
36 36
![image](images/proteinpaint/FLYWCH1.svg)
37
+## FLYWCH1 Expression
38
+![image](images/gene_expression/FLYWCH1_by_pathology.svg)
FNBP1.md
... ...
@@ -37,3 +37,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
37 37
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/FNBP1.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/FNBP1_hg38.html)
38 38
39 39
![image](images/proteinpaint/FNBP1.svg)
40
+## FNBP1 Expression
41
+![image](images/gene_expression/FNBP1_by_pathology.svg)
FNDC1.md
... ...
@@ -35,3 +35,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
35 35
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/FNDC1.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/FNDC1_hg38.html)
36 36
37 37
![image](images/proteinpaint/FNDC1.svg)
38
+## FNDC1 Expression
39
+![image](images/gene_expression/FNDC1_by_pathology.svg)
FOXC1.md
... ...
@@ -37,3 +37,5 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/F
37 37
38 38
## References
39 39
1. *Schmitz R, Wright GW, Huang DW, Johnson CA, Phelan JD, Wang JQ, Roulland S, Kasbekar M, Young RM, Shaffer AL, Hodson DJ, Xiao W, Yu X, Yang Y, Zhao H, Xu W, Liu X, Zhou B, Du W, Chan WC, Jaffe ES, Gascoyne RD, Connors JM, Campo E, Lopez-Guillermo A, Rosenwald A, Ott G, Delabie J, Rimsza LM, Tay Kuang Wei K, Zelenetz AD, Leonard JP, Bartlett NL, Tran B, Shetty J, Zhao Y, Soppet DR, Pittaluga S, Wilson WH, Staudt LM. Genetics and Pathogenesis of Diffuse Large B-Cell Lymphoma. N Engl J Med. 2018 Apr 12;378(15):1396-1407. doi: 10.1056/NEJMoa1801445. PMID: 29641966; PMCID: PMC6010183.*
40
+## FOXC1 Expression
41
+![image](images/gene_expression/FOXC1_by_pathology.svg)
FOXO1.md
... ...
@@ -76,3 +76,5 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/F
76 76
3. *Grande BM, Gerhard DS, Jiang A, Griner NB, Abramson JS, Alexander TB, Allen H, Ayers LW, Bethony JM, Bhatia K, Bowen J, Casper C, Choi JK, Culibrk L, Davidsen TM, Dyer MA, Gastier-Foster JM, Gesuwan P, Greiner TC, Gross TG, Hanf B, Harris NL, He Y, Irvin JD, Jaffe ES, Jones SJM, Kerchan P, Knoetze N, Leal FE, Lichtenberg TM, Ma Y, Martin JP, Martin MR, Mbulaiteye SM, Mullighan CG, Mungall AJ, Namirembe C, Novik K, Noy A, Ogwang MD, Omoding A, Orem J, Reynolds SJ, Rushton CK, Sandlund JT, Schmitz R, Taylor C, Wilson WH, Wright GW, Zhao EY, Marra MA, Morin RD, Staudt LM. Genome-wide discovery of somatic coding and noncoding mutations in pediatric endemic and sporadic Burkitt lymphoma. Blood. 2019 Mar 21;133(12):1313-1324. doi: 10.1182/blood-2018-09-871418. Epub 2019 Jan 7. PMID: 30617194; PMCID: PMC6428665.*
77 77
4. *Pyrzynska B, Dwojak M, Zerrouqi A, Morlino G, Zapala P, Miazek N, Zagozdzon A, Bojarczuk K, Bobrowicz M, Siernicka M, Machnicki MM, Gobessi S, Barankiewicz J, Lech-Maranda E, Efremov DG, Juszczynski P, Calado D, Golab J, Winiarska M. FOXO1 promotes resistance of non-Hodgkin lymphomas to anti-CD20-based therapy. Oncoimmunology. 2018 Jan 25;7(5):e1423183. doi: 10.1080/2162402X.2017.1423183. PMID: 29721381; PMCID: PMC5927521.*
78 78
5. *Morin RD, Mendez-Lago M, Mungall AJ, Goya R, Mungall KL, Corbett RD, Johnson NA, Severson TM, Chiu R, Field M, Jackman S, Krzywinski M, Scott DW, Trinh DL, Tamura-Wells J, Li S, Firme MR, Rogic S, Griffith M, Chan S, Yakovenko O, Meyer IM, Zhao EY, Smailus D, Moksa M, Chittaranjan S, Rimsza L, Brooks-Wilson A, Spinelli JJ, Ben-Neriah S, Meissner B, Woolcock B, Boyle M, McDonald H, Tam A, Zhao Y, Delaney A, Zeng T, Tse K, Butterfield Y, Birol I, Holt R, Schein J, Horsman DE, Moore R, Jones SJ, Connors JM, Hirst M, Gascoyne RD, Marra MA. Frequent mutation of histone-modifying genes in non-Hodgkin lymphoma. Nature. 2011 Jul 27;476(7360):298-303. doi: 10.1038/nature10351. PMID: 21796119; PMCID: PMC3210554.*
79
+## FOXO1 Expression
80
+![image](images/gene_expression/FOXO1_by_pathology.svg)
FOXP1.md
... ...
@@ -46,3 +46,5 @@ images/proteinpaint/FOXP1_NM_032682.svg)
46 46
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/FOXP1.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/FOXP1_hg38.html)
47 47
48 48
![image](images/proteinpaint/FOXP1.svg)
49
+## FOXP1 Expression
50
+![image](images/gene_expression/FOXP1_by_pathology.svg)
FTCD.md
... ...
@@ -34,3 +34,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
34 34
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/FTCD.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/FTCD_hg38.html)
35 35
36 36
![image](images/proteinpaint/FTCD.svg)
37
+## FTCD Expression
38
+![image](images/gene_expression/FTCD_by_pathology.svg)
FUBP1.md
... ...
@@ -41,3 +41,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
41 41
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/FUBP1.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/FUBP1_hg38.html)
42 42
43 43
![image](images/proteinpaint/FUBP1.svg)
44
+## FUBP1 Expression
45
+![image](images/gene_expression/FUBP1_by_pathology.svg)
FUT5.md
... ...
@@ -35,3 +35,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
35 35
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/FUT5.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/FUT5_hg38.html)
36 36
37 37
![image](images/proteinpaint/FUT5.svg)
38
+## FUT5 Expression
39
+![image](images/gene_expression/FUT5_by_pathology.svg)
FZD3.md
... ...
@@ -34,3 +34,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
34 34
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/FZD3.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/FZD3_hg38.html)
35 35
36 36
![image](images/proteinpaint/FZD3.svg)
37
+## FZD3 Expression
38
+![image](images/gene_expression/FZD3_by_pathology.svg)
FZR1.md
... ...
@@ -32,3 +32,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
32 32
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/FZR1.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/FZR1_hg38.html)
33 33
34 34
![image](images/proteinpaint/FZR1.svg)
35
+## FZR1 Expression
36
+![image](images/gene_expression/FZR1_by_pathology.svg)
GABRA2.md
... ...
@@ -35,3 +35,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
35 35
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/GABRA2.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/GABRA2_hg38.html)
36 36
37 37
![image](images/proteinpaint/GABRA2.svg)
38
+## GABRA2 Expression
39
+![image](images/gene_expression/GABRA2_by_pathology.svg)
GAK.md
... ...
@@ -35,3 +35,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
35 35
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/GAK.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/GAK_hg38.html)
36 36
37 37
![image](images/proteinpaint/GAK.svg)
38
+## GAK Expression
39
+![image](images/gene_expression/GAK_by_pathology.svg)
GBP7.md
... ...
@@ -32,3 +32,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
32 32
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/GBP7.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/GBP7_hg38.html)
33 33
34 34
![image](images/proteinpaint/GBP7.svg)
35
+## GBP7 Expression
36
+![image](images/gene_expression/GBP7_by_pathology.svg)
GGTLA4.md
... ...
@@ -28,3 +28,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
28 28
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/GGTLA4.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/GGTLA4_hg38.html)
29 29
30 30
![image](images/proteinpaint/GGTLA4.svg)
31
+## GGTLA4 Expression
32
+![image](images/gene_expression/GGTLA4_by_pathology.svg)
GNA13.md
... ...
@@ -57,4 +57,5 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/G
57 57
## References
58 58
1. *Morin RD, Mungall K, Pleasance E, Mungall AJ, Goya R, Huff RD, Scott DW, Ding J, Roth A, Chiu R, Corbett RD, Chan FC, Mendez-Lago M, Trinh DL, Bolger-Munro M, Taylor G, Hadj Khodabakhshi A, Ben-Neriah S, Pon J, Meissner B, Woolcock B, Farnoud N, Rogic S, Lim EL, Johnson NA, Shah S, Jones S, Steidl C, Holt R, Birol I, Moore R, Connors JM, Gascoyne RD, Marra MA. Mutational and structural analysis of diffuse large B-cell lymphoma using whole-genome sequencing. Blood. 2013 Aug 15;122(7):1256-65. doi: 10.1182/blood-2013-02-483727. Epub 2013 May 22. PMID: 23699601; PMCID: PMC3744992.*
59 59
2. *Muppidi JR, Schmitz R, Green JA, Xiao W, Larsen AB, Braun SE, An J, Xu Y, Rosenwald A, Ott G, Gascoyne RD, Rimsza LM, Campo E, Jaffe ES, Delabie J, Smeland EB, Braziel RM, Tubbs RR, Cook JR, Weisenburger DD, Chan WC, Vaidehi N, Staudt LM, Cyster JG. Loss of signalling via Gα13 in germinal centre B-cell-derived lymphoma. Nature. 2014 Dec 11;516(7530):254-8. doi: 10.1038/nature13765. Epub 2014 Sep 28. PMID: 25274307; PMCID: PMC4267955.*
60
-3. *Morin RD, Mendez-Lago M, Mungall AJ, Goya R, Mungall KL, Corbett RD, Johnson NA, Severson TM, Chiu R, Field M, Jackman S, Krzywinski M, Scott DW, Trinh DL, Tamura-Wells J, Li S, Firme MR, Rogic S, Griffith M, Chan S, Yakovenko O, Meyer IM, Zhao EY, Smailus D, Moksa M, Chittaranjan S, Rimsza L, Brooks-Wilson A, Spinelli JJ, Ben-Neriah S, Meissner B, Woolcock B, Boyle M, McDonald H, Tam A, Zhao Y, Delaney A, Zeng T, Tse K, Butterfield Y, Birol I, Holt R, Schein J, Horsman DE, Moore R, Jones SJ, Connors JM, Hirst M, Gascoyne RD, Marra MA. Frequent mutation of histone-modifying genes in non-Hodgkin lymphoma. Nature. 2011 Jul 27;476(7360):298-303. doi: 10.1038/nature10351. PMID: 21796119; PMCID: PMC3210554.*
... ...
\ No newline at end of file
0
+3. *Morin RD, Mendez-Lago M, Mungall AJ, Goya R, Mungall KL, Corbett RD, Johnson NA, Severson TM, Chiu R, Field M, Jackman S, Krzywinski M, Scott DW, Trinh DL, Tamura-Wells J, Li S, Firme MR, Rogic S, Griffith M, Chan S, Yakovenko O, Meyer IM, Zhao EY, Smailus D, Moksa M, Chittaranjan S, Rimsza L, Brooks-Wilson A, Spinelli JJ, Ben-Neriah S, Meissner B, Woolcock B, Boyle M, McDonald H, Tam A, Zhao Y, Delaney A, Zeng T, Tse K, Butterfield Y, Birol I, Holt R, Schein J, Horsman DE, Moore R, Jones SJ, Connors JM, Hirst M, Gascoyne RD, Marra MA. Frequent mutation of histone-modifying genes in non-Hodgkin lymphoma. Nature. 2011 Jul 27;476(7360):298-303. doi: 10.1038/nature10351. PMID: 21796119; PMCID: PMC3210554.*## GNA13 Expression
1
+![image](images/gene_expression/GNA13_by_pathology.svg)
GNAI2.md
... ...
@@ -62,3 +62,5 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/G
62 62
63 63
## References
64 64
1. *Morin RD, Mungall K, Pleasance E, Mungall AJ, Goya R, Huff RD, Scott DW, Ding J, Roth A, Chiu R, Corbett RD, Chan FC, Mendez-Lago M, Trinh DL, Bolger-Munro M, Taylor G, Hadj Khodabakhshi A, Ben-Neriah S, Pon J, Meissner B, Woolcock B, Farnoud N, Rogic S, Lim EL, Johnson NA, Shah S, Jones S, Steidl C, Holt R, Birol I, Moore R, Connors JM, Gascoyne RD, Marra MA. Mutational and structural analysis of diffuse large B-cell lymphoma using whole-genome sequencing. Blood. 2013 Aug 15;122(7):1256-65. doi: 10.1182/blood-2013-02-483727. Epub 2013 May 22. PMID: 23699601; PMCID: PMC3744992.*
65
+## GNAI2 Expression
66
+![image](images/gene_expression/GNAI2_by_pathology.svg)
GNAS.md
... ...
@@ -35,3 +35,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
35 35
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/GNAS.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/GNAS_hg38.html)
36 36
37 37
![image](images/proteinpaint/GNAS.svg)
38
+## GNAS Expression
39
+![image](images/gene_expression/GNAS_by_pathology.svg)
GOLGA5.md
... ...
@@ -35,3 +35,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
35 35
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/GOLGA5.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/GOLGA5_hg38.html)
36 36
37 37
![image](images/proteinpaint/GOLGA5.svg)
38
+## GOLGA5 Expression
39
+![image](images/gene_expression/GOLGA5_by_pathology.svg)
GPC5.md
... ...
@@ -35,3 +35,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
35 35
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/GPC5.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/GPC5_hg38.html)
36 36
37 37
![image](images/proteinpaint/GPC5.svg)
38
+## GPC5 Expression
39
+![image](images/gene_expression/GPC5_by_pathology.svg)
GRB2.md
... ...
@@ -41,3 +41,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
41 41
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/GRB2.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/GRB2_hg38.html)
42 42
43 43
![image](images/proteinpaint/GRB2.svg)
44
+## GRB2 Expression
45
+![image](images/gene_expression/GRB2_by_pathology.svg)
GRHPR.md
... ...
@@ -46,3 +46,5 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/G
46 46
47 47
## References
48 48
1. *Wright GW, Huang DW, Phelan JD, Coulibaly ZA, Roulland S, Young RM, Wang JQ, Schmitz R, Morin RD, Tang J, Jiang A, Bagaev A, Plotnikova O, Kotlov N, Johnson CA, Wilson WH, Scott DW, Staudt LM. A Probabilistic Classification Tool for Genetic Subtypes of Diffuse Large B Cell Lymphoma with Therapeutic Implications. Cancer Cell. 2020 Apr 13;37(4):551-568.e14. doi: 10.1016/j.ccell.2020.03.015. PMID: 32289277; PMCID: PMC8459709.*
49
+## GRHPR Expression
50
+![image](images/gene_expression/GRHPR_by_pathology.svg)
GRIK5.md
... ...
@@ -34,3 +34,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
34 34
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/GRIK5.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/GRIK5_hg38.html)
35 35
36 36
![image](images/proteinpaint/GRIK5.svg)
37
+## GRIK5 Expression
38
+![image](images/gene_expression/GRIK5_by_pathology.svg)
GRIN2A.md
... ...
@@ -32,3 +32,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
32 32
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/GRIN2A.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/GRIN2A_hg38.html)
33 33
34 34
![image](images/proteinpaint/GRIN2A.svg)
35
+## GRIN2A Expression
36
+![image](images/gene_expression/GRIN2A_by_pathology.svg)
GRM6.md
... ...
@@ -32,3 +32,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
32 32
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/GRM6.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/GRM6_hg38.html)
33 33
34 34
![image](images/proteinpaint/GRM6.svg)
35
+## GRM6 Expression
36
+![image](images/gene_expression/GRM6_by_pathology.svg)
GSG2.md
... ...
@@ -35,3 +35,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
35 35
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/GSG2.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/GSG2_hg38.html)
36 36
37 37
![image](images/proteinpaint/GSG2.svg)
38
+## GSG2 Expression
39
+![image](images/gene_expression/GSG2_by_pathology.svg)
GTSE1.md
... ...
@@ -34,3 +34,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
34 34
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/GTSE1.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/GTSE1_hg38.html)
35 35
36 36
![image](images/proteinpaint/GTSE1.svg)
37
+## GTSE1 Expression
38
+![image](images/gene_expression/GTSE1_by_pathology.svg)
Gene_lists.md
... ...
@@ -5,3 +5,5 @@
5 5
| FL | [(66 genes)](tier1_fl) |[(34 genes)](tier2_fl) |
6 6
| BL | [(29 genes)](tier1_bl) |[(189 genes)](tier2_bl) |
7 7
| MCL | [(25 genes)](tier1_mcl) |[(30 genes)](tier2_mcl) |
8
+## Gene_lists Expression
9
+![image](images/gene_expression/Gene_lists_by_pathology.svg)
HDAC7.md
... ...
@@ -35,3 +35,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
35 35
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/HDAC7.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/HDAC7_hg38.html)
36 36
37 37
![image](images/proteinpaint/HDAC7.svg)
38
+## HDAC7 Expression
39
+![image](images/gene_expression/HDAC7_by_pathology.svg)
HEPH.md
... ...
@@ -32,3 +32,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
32 32
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/HEPH.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/HEPH_hg38.html)
33 33
34 34
![image](images/proteinpaint/HEPH.svg)
35
+## HEPH Expression
36
+![image](images/gene_expression/HEPH_by_pathology.svg)
HIST1H1B.md
... ...
@@ -39,3 +39,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
39 39
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/HIST1H1B.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/HIST1H1B_hg38.html)
40 40
41 41
![image](images/proteinpaint/HIST1H1B.svg)
42
+## HIST1H1B Expression
43
+![image](images/gene_expression/HIST1H1B_by_pathology.svg)
HIST1H1C.md
... ...
@@ -48,3 +48,5 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/H
48 48
49 49
1. *Morin RD, Mendez-Lago M, Mungall AJ, Goya R, Mungall KL, Corbett RD, Johnson NA, Severson TM, Chiu R, Field M, Jackman S, Krzywinski M, Scott DW, Trinh DL, Tamura-Wells J, Li S, Firme MR, Rogic S, Griffith M, Chan S, Yakovenko O, Meyer IM, Zhao EY, Smailus D, Moksa M, Chittaranjan S, Rimsza L, Brooks-Wilson A, Spinelli JJ, Ben-Neriah S, Meissner B, Woolcock B, Boyle M, McDonald H, Tam A, Zhao Y, Delaney A, Zeng T, Tse K, Butterfield Y, Birol I, Holt R, Schein J, Horsman DE, Moore R, Jones SJ, Connors JM, Hirst M, Gascoyne RD, Marra MA. Frequent mutation of histone-modifying genes in non-Hodgkin lymphoma. Nature. 2011 Jul 27;476(7360):298-303. doi: 10.1038/nature10351. PMID: 21796119; PMCID: PMC3210554.*
50 50
2. *Li H, Kaminski MS, Li Y, Yildiz M, Ouillette P, Jones S, Fox H, Jacobi K, Saiya-Cork K, Bixby D, Lebovic D, Roulston D, Shedden K, Sabel M, Marentette L, Cimmino V, Chang AE, Malek SN. Mutations in linker histone genes HIST1H1 B, C, D, and E; OCT2 (POU2F2); IRF8; and ARID1A underlying the pathogenesis of follicular lymphoma. Blood. 2014 Mar 6;123(10):1487-98. doi: 10.1182/blood-2013-05-500264. Epub 2014 Jan 16. PMID: 24435047; PMCID: PMC4729540.*
51
+## HIST1H1C Expression
52
+![image](images/gene_expression/HIST1H1C_by_pathology.svg)
HIST1H1D.md
... ...
@@ -42,3 +42,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
42 42
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/HIST1H1D.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/HIST1H1D_hg38.html)
43 43
44 44
![image](images/proteinpaint/HIST1H1D.svg)
45
+## HIST1H1D Expression
46
+![image](images/gene_expression/HIST1H1D_by_pathology.svg)
HIST1H1E.md
... ...
@@ -65,3 +65,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
65 65
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/HIST1H1E.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/HIST1H1E_hg38.html)
66 66
67 67
![image](images/proteinpaint/HIST1H1E.svg)
68
+## HIST1H1E Expression
69
+![image](images/gene_expression/HIST1H1E_by_pathology.svg)
HIST1H2AC.md
... ...
@@ -60,3 +60,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
60 60
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/HIST1H2AC.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/HIST1H2AC_hg38.html)
61 61
62 62
![image](images/proteinpaint/HIST1H2AC.svg)
63
+## HIST1H2AC Expression
64
+![image](images/gene_expression/HIST1H2AC_by_pathology.svg)
HIST1H2AG.md
... ...
@@ -50,3 +50,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
50 50
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/HIST1H2AG.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/HIST1H2AG_hg38.html)
51 51
52 52
![image](images/proteinpaint/HIST1H2AG.svg)
53
+## HIST1H2AG Expression
54
+![image](images/gene_expression/HIST1H2AG_by_pathology.svg)
HIST1H2AM.md
... ...
@@ -71,3 +71,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
71 71
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/HIST1H2AM.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/HIST1H2AM_hg38.html)
72 72
73 73
![image](images/proteinpaint/HIST1H2AM.svg)
74
+## HIST1H2AM Expression
75
+![image](images/gene_expression/HIST1H2AM_by_pathology.svg)
HIST1H2BC.md
... ...
@@ -64,3 +64,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
64 64
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/HIST1H2BC.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/HIST1H2BC_hg38.html)
65 65
66 66
![image](images/proteinpaint/HIST1H2BC.svg)
67
+## HIST1H2BC Expression
68
+![image](images/gene_expression/HIST1H2BC_by_pathology.svg)
HIST1H2BD.md
... ...
@@ -27,3 +27,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
27 27
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/HIST1H2BD.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/HIST1H2BD_hg38.html)
28 28
29 29
![image](images/proteinpaint/HIST1H2BD.svg)
30
+## HIST1H2BD Expression
31
+![image](images/gene_expression/HIST1H2BD_by_pathology.svg)
HIST1H2BG.md
... ...
@@ -27,3 +27,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
27 27
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/HIST1H2BG.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/HIST1H2BG_hg38.html)
28 28
29 29
![image](images/proteinpaint/HIST1H2BG.svg)
30
+## HIST1H2BG Expression
31
+![image](images/gene_expression/HIST1H2BG_by_pathology.svg)
HIST1H2BK.md
... ...
@@ -41,3 +41,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
41 41
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/HIST1H2BK.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/HIST1H2BK_hg38.html)
42 42
43 43
![image](images/proteinpaint/HIST1H2BK.svg)
44
+## HIST1H2BK Expression
45
+![image](images/gene_expression/HIST1H2BK_by_pathology.svg)
HIST1H2BM.md
... ...
@@ -32,3 +32,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
32 32
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/HIST1H2BM.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/HIST1H2BM_hg38.html)
33 33
34 34
![image](images/proteinpaint/HIST1H2BM.svg)
35
+## HIST1H2BM Expression
36
+![image](images/gene_expression/HIST1H2BM_by_pathology.svg)
HIST1H3B.md
... ...
@@ -45,3 +45,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
45 45
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/HIST1H3B.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/HIST1H3B_hg38.html)
46 46
47 47
![image](images/proteinpaint/HIST1H3B.svg)
48
+## HIST1H3B Expression
49
+![image](images/gene_expression/HIST1H3B_by_pathology.svg)
HIST1H3D.md
... ...
@@ -42,3 +42,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
42 42
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/HIST1H3D.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/HIST1H3D_hg38.html)
43 43
44 44
![image](images/proteinpaint/HIST1H3D.svg)
45
+## HIST1H3D Expression
46
+![image](images/gene_expression/HIST1H3D_by_pathology.svg)
HIST1H3G.md
... ...
@@ -29,3 +29,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
29 29
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/HIST1H3G.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/HIST1H3G_hg38.html)
30 30
31 31
![image](images/proteinpaint/HIST1H3G.svg)
32
+## HIST1H3G Expression
33
+![image](images/gene_expression/HIST1H3G_by_pathology.svg)
HIST1H3H.md
... ...
@@ -34,3 +34,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
34 34
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/HIST1H3H.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/HIST1H3H_hg38.html)
35 35
36 36
![image](images/proteinpaint/HIST1H3H.svg)
37
+## HIST1H3H Expression
38
+![image](images/gene_expression/HIST1H3H_by_pathology.svg)
HIST1H3I.md
... ...
@@ -36,3 +36,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
36 36
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/HIST1H3I.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/HIST1H3I_hg38.html)
37 37
38 38
![image](images/proteinpaint/HIST1H3I.svg)
39
+## HIST1H3I Expression
40
+![image](images/gene_expression/HIST1H3I_by_pathology.svg)
HIST1H3J.md
... ...
@@ -42,3 +42,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
42 42
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/HIST1H3J.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/HIST1H3J_hg38.html)
43 43
44 44
![image](images/proteinpaint/HIST1H3J.svg)
45
+## HIST1H3J Expression
46
+![image](images/gene_expression/HIST1H3J_by_pathology.svg)
HIST1H4J.md
... ...
@@ -34,3 +34,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
34 34
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/HIST1H4J.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/HIST1H4J_hg38.html)
35 35
36 36
![image](images/proteinpaint/HIST1H4J.svg)
37
+## HIST1H4J Expression
38
+![image](images/gene_expression/HIST1H4J_by_pathology.svg)
HIST2H2BE.md
... ...
@@ -32,3 +32,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
32 32
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/HIST2H2BE.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/HIST2H2BE_hg38.html)
33 33
34 34
![image](images/proteinpaint/HIST2H2BE.svg)
35
+## HIST2H2BE Expression
36
+![image](images/gene_expression/HIST2H2BE_by_pathology.svg)
HLA-A.md
... ...
@@ -48,3 +48,5 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/H
48 48
49 49
## References
50 50
1. *Riemersma, S., Jordanova, E., Schop, R., Philippo, K., Looijenga, L., Schuuring, E., & Kluin, P. (2000). Extensive genetic alterations of the HLA region, including homozygous deletions of HLA class II genes in B-cell lymphomas arising in immune-privileged sites.. Blood, 96 10, 3569-77 . https://doi.org/10.1182/BLOOD.V96.10.3569.*
51
+## HLA-A Expression
52
+![image](images/gene_expression/HLA-A_by_pathology.svg)
HLA-B.md
... ...
@@ -55,4 +55,5 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/H
55 55
![image](images/proteinpaint/HLA-B.svg)
56 56
57 57
## References
58
-1. *Riemersma, S., Jordanova, E., Schop, R., Philippo, K., Looijenga, L., Schuuring, E., & Kluin, P. (2000). Extensive genetic alterations of the HLA region, including homozygous deletions of HLA class II genes in B-cell lymphomas arising in immune-privileged sites.. Blood, 96 10, 3569-77 . https://doi.org/10.1182/BLOOD.V96.10.3569.*
... ...
\ No newline at end of file
0
+1. *Riemersma, S., Jordanova, E., Schop, R., Philippo, K., Looijenga, L., Schuuring, E., & Kluin, P. (2000). Extensive genetic alterations of the HLA region, including homozygous deletions of HLA class II genes in B-cell lymphomas arising in immune-privileged sites.. Blood, 96 10, 3569-77 . https://doi.org/10.1182/BLOOD.V96.10.3569.*## HLA-B Expression
1
+![image](images/gene_expression/HLA-B_by_pathology.svg)
HLA-C.md
... ...
@@ -34,3 +34,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
34 34
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/HLA-C.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/HLA-C_hg38.html)
35 35
36 36
![image](images/proteinpaint/HLA-C.svg)
37
+## HLA-C Expression
38
+![image](images/gene_expression/HLA-C_by_pathology.svg)
HLA-DMA.md
... ...
@@ -34,3 +34,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
34 34
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/HLA-DMA.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/HLA-DMA_hg38.html)
35 35
36 36
![image](images/proteinpaint/HLA-DMA.svg)
37
+## HLA-DMA Expression
38
+![image](images/gene_expression/HLA-DMA_by_pathology.svg)
HLA-DMB.md
... ...
@@ -38,3 +38,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
38 38
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/HLA-DMB.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/HLA-DMB_hg38.html)
39 39
40 40
![image](images/proteinpaint/HLA-DMB.svg)
41
+## HLA-DMB Expression
42
+![image](images/gene_expression/HLA-DMB_by_pathology.svg)
HLA-DQA1.md
... ...
@@ -28,3 +28,5 @@ Mutations in this gene are relatively rare in DLBCL overall. *Without further su
28 28
29 29
> [!NOTE]
30 30
> First described in DLBCL in 2021 by [Hübschmann D](https://pubmed.ncbi.nlm.nih.gov/33953289)
31
+## HLA-DQA1 Expression
32
+![image](images/gene_expression/HLA-DQA1_by_pathology.svg)
HLA-DQB1.md
... ...
@@ -34,3 +34,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
34 34
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/HLA-DQB1.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/HLA-DQB1_hg38.html)
35 35
36 36
![image](images/proteinpaint/HLA-DQB1.svg)
37
+## HLA-DQB1 Expression
38
+![image](images/gene_expression/HLA-DQB1_by_pathology.svg)
HNF1B.md
... ...
@@ -35,3 +35,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
35 35
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/HNF1B.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/HNF1B_hg38.html)
36 36
37 37
![image](images/proteinpaint/HNF1B.svg)
38
+## HNF1B Expression
39
+![image](images/gene_expression/HNF1B_by_pathology.svg)
HNRNPD.md
... ...
@@ -36,3 +36,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
36 36
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/HNRNPD.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/HNRNPD_hg38.html)
37 37
38 38
![image](images/proteinpaint/HNRNPD.svg)
39
+## HNRNPD Expression
40
+![image](images/gene_expression/HNRNPD_by_pathology.svg)
HNRNPH1.md
... ...
@@ -48,3 +48,5 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/H
48 48
## References
49 49
1. *Pararajalingam, P., Coyle, K., Arthur, S., Thomas, N., Alcaide, M., Meissner, B., Boyle, M., Qureshi, Q., Grande, B., Rushton, C., Slack, G., Mungall, A., Tam, C., Agarwal, R., Dawson, S., Lenz, G., Balasubramanian, S., Gascoyne, R., Steidl, C., Connors, J., Villa, D., Audas, T., Marra, M., Johnson, N., Scott, D., & Morin, R. (2020). Coding and non-coding drivers of mantle cell lymphoma identified through exome and genome sequencing.. Blood. https://doi.org/10.1182/blood.2019002385.*
50 50
2. *Coyle, K., Qureshi, Q., Pararajalingam, P., Thomas, N., Audas, T., & Morin, R. (2020). Perturbations in HNRNPH1 Splicing and Abundance Affect Global Splicing and Proliferation in Mantle Cell Lymphoma. Blood, 136, 23-24. https://doi.org/10.1182/BLOOD-2020-141389.*
51
+## HNRNPH1 Expression
52
+![image](images/gene_expression/HNRNPH1_by_pathology.svg)
HNRNPU.md
... ...
@@ -57,3 +57,5 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/H
57 57
58 58
## References
59 59
1. *Qureshi, Q., Coyle, K., Thomas, N., Collinge, B., Dreval, K., Hilton, L., Wong, J., Scott, D., Audas, T., & Morin, R. (2023). Hnrnpu mutations Are Haploinsufficient and Alter the Transcriptome of MYC-Driven Lymphomas. Blood. https://doi.org/10.1182/blood-2023-190409.*
60
+## HNRNPU Expression
61
+![image](images/gene_expression/HNRNPU_by_pathology.svg)
HRAS.md
... ...
@@ -35,3 +35,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
35 35
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/HRAS.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/HRAS_hg38.html)
36 36
37 37
![image](images/proteinpaint/HRAS.svg)
38
+## HRAS Expression
39
+![image](images/gene_expression/HRAS_by_pathology.svg)
HVCN1.md
... ...
@@ -52,3 +52,5 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/H
52 52
53 53
## References
54 54
1. *Krysiak, K., Gomez, F., White, B., Matlock, M., Miller, C., Trani, L., Fronick, C., Fulton, R., Kreisel, F., Cashen, A., Carson, K., Berrien-Elliott, M., Bartlett, N., Griffith, M., Griffith, O., & Fehniger, T. (2017). Recurrent somatic mutations affecting B-cell receptor signaling pathway genes in follicular lymphoma.. Blood, 129 4, 473-483 . https://doi.org/10.1182/blood-2016-07-729954.*
55
+## HVCN1 Expression
56
+![image](images/gene_expression/HVCN1_by_pathology.svg)
ICK.md
... ...
@@ -32,3 +32,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
32 32
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/ICK.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/ICK_hg38.html)
33 33
34 34
![image](images/proteinpaint/ICK.svg)
35
+## ICK Expression
36
+![image](images/gene_expression/ICK_by_pathology.svg)
ID3.md
... ...
@@ -46,3 +46,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
46 46
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/ID3.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/ID3_hg38.html)
47 47
48 48
![image](images/proteinpaint/ID3.svg)
49
+## ID3 Expression
50
+![image](images/gene_expression/ID3_by_pathology.svg)
IER2.md
... ...
@@ -26,3 +26,5 @@
26 26
27 27
> [!NOTE]
28 28
> First described in DLBCL in 2013 by [Morin RD](https://pubmed.ncbi.nlm.nih.gov/23699601)
29
+## IER2 Expression
30
+![image](images/gene_expression/IER2_by_pathology.svg)
IFNGR1.md
... ...
@@ -35,3 +35,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
35 35
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/IFNGR1.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/IFNGR1_hg38.html)
36 36
37 37
![image](images/proteinpaint/IFNGR1.svg)
38
+## IFNGR1 Expression
39
+![image](images/gene_expression/IFNGR1_by_pathology.svg)
IGLL5.md
... ...
@@ -46,3 +46,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
46 46
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/IGLL5.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/IGLL5_hg38.html)
47 47
48 48
![image](images/proteinpaint/IGLL5.svg)
49
+## IGLL5 Expression
50
+![image](images/gene_expression/IGLL5_by_pathology.svg)
IKBKB.md
... ...
@@ -35,3 +35,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
35 35
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/IKBKB.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/IKBKB_hg38.html)
36 36
37 37
![image](images/proteinpaint/IKBKB.svg)
38
+## IKBKB Expression
39
+![image](images/gene_expression/IKBKB_by_pathology.svg)
IKBKE.md
... ...
@@ -35,3 +35,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
35 35
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/IKBKE.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/IKBKE_hg38.html)
36 36
37 37
![image](images/proteinpaint/IKBKE.svg)
38
+## IKBKE Expression
39
+![image](images/gene_expression/IKBKE_by_pathology.svg)
IKZF3.md
... ...
@@ -71,3 +71,5 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/I
71 71
72 72
## References
73 73
1. *Lazarian, G., Yin, S., Hacken, E., Sewastianik, T., Uduman, M., Font-Tello, A., Gohil, S., Li, S., Kim, E., Joyal, H., Billington, L., Witten, E., Zheng, M., Huang, T., Severgnini, M., Lefebvre, V., Rassenti, L., Gutierrez, C., Georgopoulos, K., Ott, C., Wang, L., Kipps, T., Burger, J., Livak, K., Neuberg, D., Baran-Marszak, F., Cymbalista, F., Carrasco, R., & Wu, C. (2021). A hotspot mutation in transcription factor IKZF3 drives B cell neoplasia via transcriptional dysregulation.. Cancer cell, 39 3, 380-393.e8 . https://doi.org/10.1016/j.ccell.2021.02.003.*
74
+## IKZF3 Expression
75
+![image](images/gene_expression/IKZF3_by_pathology.svg)
IL16.md
... ...
@@ -34,3 +34,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
34 34
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/IL16.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/IL16_hg38.html)
35 35
36 36
![image](images/proteinpaint/IL16.svg)
37
+## IL16 Expression
38
+![image](images/gene_expression/IL16_by_pathology.svg)
IL4R.md
... ...
@@ -52,3 +52,5 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/I
52 52
## References
53 53
1. *Gunawardana, J., Tol, T., Mak, K., Twa, D., Chavez, E., Woolcock, B., Kridel, R., Mottok, A., Healy, S., Telenius, A., Boyle, M., Ben-Neriah, S., Hung, S., Hother, C., Gascoyne, R., & Steidl, C. (2015). Abstract 3941: Recurrent IL4R mutations in primary mediastinal large B cell lymphoma. Cancer Research, 75, 3941-3941. https://doi.org/10.1158/1538-7445.AM2015-3941.*
54 54
2. *Viganò E, Gunawardana J, Mottok A, Van Tol T, Mak K, Chan FC, Chong L, Chavez E, Woolcock B, Takata K, Twa D, Shulha HP, Telenius A, Kutovaya O, Hung SS, Healy S, Ben-Neriah S, Leroy K, Gaulard P, Diepstra A, Kridel R, Savage KJ, Rimsza L, Gascoyne R, Steidl C. Somatic IL4R mutations in primary mediastinal large B-cell lymphoma lead to constitutive JAK-STAT signaling activation. Blood. 2018 May 3;131(18):2036-2046. doi: 10.1182/blood-2017-09-808907. Epub 2018 Feb 21. PMID: 29467182.*
55
+## IL4R Expression
56
+![image](images/gene_expression/IL4R_by_pathology.svg)
IL6.md
... ...
@@ -35,3 +35,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
35 35
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/IL6.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/IL6_hg38.html)
36 36
37 37
![image](images/proteinpaint/IL6.svg)
38
+## IL6 Expression
39
+![image](images/gene_expression/IL6_by_pathology.svg)
INO80.md
... ...
@@ -35,3 +35,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
35 35
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/INO80.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/INO80_hg38.html)
36 36
37 37
![image](images/proteinpaint/INO80.svg)
38
+## INO80 Expression
39
+![image](images/gene_expression/INO80_by_pathology.svg)
IRAG2.md
... ...
@@ -19,3 +19,5 @@
19 19
20 20
|
21 21
22
+## IRAG2 Expression
23
+![image](images/gene_expression/IRAG2_by_pathology.svg)
IRF1.md
... ...
@@ -40,3 +40,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
40 40
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/IRF1.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/IRF1_hg38.html)
41 41
42 42
![image](images/proteinpaint/IRF1.svg)
43
+## IRF1 Expression
44
+![image](images/gene_expression/IRF1_by_pathology.svg)
IRF4.md
... ...
@@ -57,3 +57,5 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/I
57 57
## References
58 58
1. *Hans CP, Weisenburger DD, Greiner TC, Gascoyne RD, Delabie J, Ott G, Müller-Hermelink HK, Campo E, Braziel RM, Jaffe ES, Pan Z, Farinha P, Smith LM, Falini B, Banham AH, Rosenwald A, Staudt LM, Connors JM, Armitage JO, Chan WC. Confirmation of the molecular classification of diffuse large B-cell lymphoma by immunohistochemistry using a tissue microarray. Blood. 2004 Jan 1;103(1):275-82. doi: 10.1182/blood-2003-05-1545. Epub 2003 Sep 22. PMID: 14504078.*
59 59
2. *Morin RD, Mendez-Lago M, Mungall AJ, Goya R, Mungall KL, Corbett RD, Johnson NA, Severson TM, Chiu R, Field M, Jackman S, Krzywinski M, Scott DW, Trinh DL, Tamura-Wells J, Li S, Firme MR, Rogic S, Griffith M, Chan S, Yakovenko O, Meyer IM, Zhao EY, Smailus D, Moksa M, Chittaranjan S, Rimsza L, Brooks-Wilson A, Spinelli JJ, Ben-Neriah S, Meissner B, Woolcock B, Boyle M, McDonald H, Tam A, Zhao Y, Delaney A, Zeng T, Tse K, Butterfield Y, Birol I, Holt R, Schein J, Horsman DE, Moore R, Jones SJ, Connors JM, Hirst M, Gascoyne RD, Marra MA. Frequent mutation of histone-modifying genes in non-Hodgkin lymphoma. Nature. 2011 Jul 27;476(7360):298-303. doi: 10.1038/nature10351. PMID: 21796119; PMCID: PMC3210554.*
60
+## IRF4 Expression
61
+![image](images/gene_expression/IRF4_by_pathology.svg)
IRF8.md
... ...
@@ -66,3 +66,5 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/I
66 66
1. *Wright GW, Huang DW, Phelan JD, Coulibaly ZA, Roulland S, Young RM, Wang JQ, Schmitz R, Morin RD, Tang J, Jiang A, Bagaev A, Plotnikova O, Kotlov N, Johnson CA, Wilson WH, Scott DW, Staudt LM. A Probabilistic Classification Tool for Genetic Subtypes of Diffuse Large B Cell Lymphoma with Therapeutic Implications. Cancer Cell. 2020 Apr 13;37(4):551-568.e14. doi: 10.1016/j.ccell.2020.03.015. PMID: 32289277; PMCID: PMC8459709.*
67 67
2. *Qiu Z, Khalife J, Lin AP, Ethiraj P, Jaafar C, Chiou L, Huelgas-Morales G, Aslam S, Arya S, Gupta YK, Dahia PLM, Aguiar RCT. IRF8-mutant B cell lymphoma evades immunity through a CD74-dependent deregulation of antigen processing and presentation in MHC CII complexes. bioRxiv [Preprint]. 2023 Oct 15:2023.10.14.560755. doi: 10.1101/2023.10.14.560755. PMID: 37873241; PMCID: PMC10592808.*
68 68
3. *Morin RD, Mendez-Lago M, Mungall AJ, Goya R, Mungall KL, Corbett RD, Johnson NA, Severson TM, Chiu R, Field M, Jackman S, Krzywinski M, Scott DW, Trinh DL, Tamura-Wells J, Li S, Firme MR, Rogic S, Griffith M, Chan S, Yakovenko O, Meyer IM, Zhao EY, Smailus D, Moksa M, Chittaranjan S, Rimsza L, Brooks-Wilson A, Spinelli JJ, Ben-Neriah S, Meissner B, Woolcock B, Boyle M, McDonald H, Tam A, Zhao Y, Delaney A, Zeng T, Tse K, Butterfield Y, Birol I, Holt R, Schein J, Horsman DE, Moore R, Jones SJ, Connors JM, Hirst M, Gascoyne RD, Marra MA. Frequent mutation of histone-modifying genes in non-Hodgkin lymphoma. Nature. 2011 Jul 27;476(7360):298-303. doi: 10.1038/nature10351. PMID: 21796119; PMCID: PMC3210554.*
69
+## IRF8 Expression
70
+![image](images/gene_expression/IRF8_by_pathology.svg)
ITPKB.md
... ...
@@ -53,3 +53,5 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/I
53 53
54 54
## References
55 55
1. *Mareschal S, Dubois S, Viailly PJ, Bertrand P, Bohers E, Maingonnat C, Jaïs JP, Tesson B, Ruminy P, Peyrouze P, Copie-Bergman C, Fest T, Jo Molina T, Haioun C, Salles G, Tilly H, Lecroq T, Leroy K, Jardin F. Whole exome sequencing of relapsed/refractory patients expands the repertoire of somatic mutations in diffuse large B-cell lymphoma. Genes Chromosomes Cancer. 2016 Mar;55(3):251-67. doi: 10.1002/gcc.22328. Epub 2015 Nov 26. PMID: 26608593.*
56
+## ITPKB Expression
57
+![image](images/gene_expression/ITPKB_by_pathology.svg)
ITPR3.md
... ...
@@ -34,3 +34,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
34 34
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/ITPR3.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/ITPR3_hg38.html)
35 35
36 36
![image](images/proteinpaint/ITPR3.svg)
37
+## ITPR3 Expression
38
+![image](images/gene_expression/ITPR3_by_pathology.svg)
JAK1.md
... ...
@@ -41,3 +41,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
41 41
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/JAK1.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/JAK1_hg38.html)
42 42
43 43
![image](images/proteinpaint/JAK1.svg)
44
+## JAK1 Expression
45
+![image](images/gene_expression/JAK1_by_pathology.svg)
JAK3.md
... ...
@@ -35,3 +35,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
35 35
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/JAK3.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/JAK3_hg38.html)
36 36
37 37
![image](images/proteinpaint/JAK3.svg)
38
+## JAK3 Expression
39
+![image](images/gene_expression/JAK3_by_pathology.svg)
JUNB.md
... ...
@@ -47,3 +47,5 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/J
47 47
3. *Revisiting Reddy: A DLBCL Do-over
48 48
Kostiantyn Dreval, Manuela Cruz, Christopher Rushton, Nina Liuta, Houman Layegh Mirhosseini, Callum Brown, Ryan D. Morin, the GAMBL consortium
49 49
bioRxiv 2023.11.21.567983; doi: https://doi.org/10.1101/2023.11.21.567983*
50
+## JUNB Expression
51
+![image](images/gene_expression/JUNB_by_pathology.svg)
JUP.md
... ...
@@ -32,3 +32,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
32 32
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/JUP.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/JUP_hg38.html)
33 33
34 34
![image](images/proteinpaint/JUP.svg)
35
+## JUP Expression
36
+![image](images/gene_expression/JUP_by_pathology.svg)
KCMF1.md
... ...
@@ -35,3 +35,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
35 35
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/KCMF1.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/KCMF1_hg38.html)
36 36
37 37
![image](images/proteinpaint/KCMF1.svg)
38
+## KCMF1 Expression
39
+![image](images/gene_expression/KCMF1_by_pathology.svg)
KCNK10.md
... ...
@@ -34,3 +34,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
34 34
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/KCNK10.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/KCNK10_hg38.html)
35 35
36 36
![image](images/proteinpaint/KCNK10.svg)
37
+## KCNK10 Expression
38
+![image](images/gene_expression/KCNK10_by_pathology.svg)
KIFC3.md
... ...
@@ -34,3 +34,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
34 34
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/KIFC3.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/KIFC3_hg38.html)
35 35
36 36
![image](images/proteinpaint/KIFC3.svg)
37
+## KIFC3 Expression
38
+![image](images/gene_expression/KIFC3_by_pathology.svg)
KIR3DL1.md
... ...
@@ -32,3 +32,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
32 32
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/KIR3DL1.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/KIR3DL1_hg38.html)
33 33
34 34
![image](images/proteinpaint/KIR3DL1.svg)
35
+## KIR3DL1 Expression
36
+![image](images/gene_expression/KIR3DL1_by_pathology.svg)
KLF2.md
... ...
@@ -59,4 +59,5 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/K
59 59
## References
60 60
1. *Pasqualucci L, Trifonov V, Fabbri G, Ma J, Rossi D, Chiarenza A, Wells VA, Grunn A, Messina M, Elliot O, Chan J, Bhagat G, Chadburn A, Gaidano G, Mullighan CG, Rabadan R, Dalla-Favera R. Analysis of the coding genome of diffuse large B-cell lymphoma. Nat Genet. 2011 Jul 31;43(9):830-7. doi: 10.1038/ng.892. PMID: 21804550; PMCID: PMC3297422.*
61 61
2. *Clipson, A., Wang, M., Leval, L., Ashton-Key, M., Wotherspoon, A., Vassiliou, G., Bolli, N., Grove, C., Moody, S., Escudero-Ibarz, L., Gundem, G., Brügger, K., Xue, X., Mi, E., Bench, A., Scott, M., Liu, H., Follows, G., Robles, E., Martinez-Climent, J., Oscier, D., Watkins, A., & Du, M. (2014). KLF2 mutation is the most frequent somatic change in splenic marginal zone lymphoma and identifies a subset with distinct genotype. Leukemia, 29, 1177-1185. https://doi.org/10.1038/leu.2014.330.*
62
-3. *Wright GW, Huang DW, Phelan JD, Coulibaly ZA, Roulland S, Young RM, Wang JQ, Schmitz R, Morin RD, Tang J, Jiang A, Bagaev A, Plotnikova O, Kotlov N, Johnson CA, Wilson WH, Scott DW, Staudt LM. A Probabilistic Classification Tool for Genetic Subtypes of Diffuse Large B Cell Lymphoma with Therapeutic Implications. Cancer Cell. 2020 Apr 13;37(4):551-568.e14. doi: 10.1016/j.ccell.2020.03.015. PMID: 32289277; PMCID: PMC8459709.*
... ...
\ No newline at end of file
0
+3. *Wright GW, Huang DW, Phelan JD, Coulibaly ZA, Roulland S, Young RM, Wang JQ, Schmitz R, Morin RD, Tang J, Jiang A, Bagaev A, Plotnikova O, Kotlov N, Johnson CA, Wilson WH, Scott DW, Staudt LM. A Probabilistic Classification Tool for Genetic Subtypes of Diffuse Large B Cell Lymphoma with Therapeutic Implications. Cancer Cell. 2020 Apr 13;37(4):551-568.e14. doi: 10.1016/j.ccell.2020.03.015. PMID: 32289277; PMCID: PMC8459709.*## KLF2 Expression
1
+![image](images/gene_expression/KLF2_by_pathology.svg)
KLHL14.md
... ...
@@ -51,3 +51,5 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/K
51 51
1. *Zhang J, Grubor V, Love CL, Banerjee A, Richards KL, Mieczkowski PA, Dunphy C, Choi W, Au WY, Srivastava G, Lugar PL, Rizzieri DA, Lagoo AS, Bernal-Mizrachi L, Mann KP, Flowers C, Naresh K, Evens A, Gordon LI, Czader M, Gill JI, Hsi ED, Liu Q, Fan A, Walsh K, Jima D, Smith LL, Johnson AJ, Byrd JC, Luftig MA, Ni T, Zhu J, Chadburn A, Levy S, Dunson D, Dave SS. Genetic heterogeneity of diffuse large B-cell lymphoma. Proc Natl Acad Sci U S A. 2013 Jan 22;110(4):1398-403. doi: 10.1073/pnas.1205299110. Epub 2013 Jan 4. PMID: 23292937; PMCID: PMC3557051.*
52 52
2. *Choi J, Phelan JD, Wright GW, Häupl B, Huang DW, Shaffer AL 3rd, Young RM, Wang Z, Zhao H, Yu X, Oellerich T, Staudt LM. Regulation of B cell receptor-dependent NF-κB signaling by the tumor suppressor KLHL14. Proc Natl Acad Sci U S A. 2020 Mar 17;117(11):6092-6102. doi: 10.1073/pnas.1921187117. Epub 2020 Mar 3. PMID: 32127472; PMCID: PMC7084139.*
53 53
54
+## KLHL14 Expression
55
+![image](images/gene_expression/KLHL14_by_pathology.svg)
KLHL21.md
... ...
@@ -40,3 +40,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
40 40
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/KLHL21.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/KLHL21_hg38.html)
41 41
42 42
![image](images/proteinpaint/KLHL21.svg)
43
+## KLHL21 Expression
44
+![image](images/gene_expression/KLHL21_by_pathology.svg)
KLHL26.md
... ...
@@ -34,3 +34,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
34 34
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/KLHL26.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/KLHL26_hg38.html)
35 35
36 36
![image](images/proteinpaint/KLHL26.svg)
37
+## KLHL26 Expression
38
+![image](images/gene_expression/KLHL26_by_pathology.svg)
KLHL6.md
... ...
@@ -75,4 +75,5 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/K
75 75
76 76
## References
77 77
1. *Morin RD, Mendez-Lago M, Mungall AJ, Goya R, Mungall KL, Corbett RD, Johnson NA, Severson TM, Chiu R, Field M, Jackman S, Krzywinski M, Scott DW, Trinh DL, Tamura-Wells J, Li S, Firme MR, Rogic S, Griffith M, Chan S, Yakovenko O, Meyer IM, Zhao EY, Smailus D, Moksa M, Chittaranjan S, Rimsza L, Brooks-Wilson A, Spinelli JJ, Ben-Neriah S, Meissner B, Woolcock B, Boyle M, McDonald H, Tam A, Zhao Y, Delaney A, Zeng T, Tse K, Butterfield Y, Birol I, Holt R, Schein J, Horsman DE, Moore R, Jones SJ, Connors JM, Hirst M, Gascoyne RD, Marra MA. Frequent mutation of histone-modifying genes in non-Hodgkin lymphoma. Nature. 2011 Jul 27;476(7360):298-303. doi: 10.1038/nature10351. PMID: 21796119; PMCID: PMC3210554.*
78
-2. *Choi, J., Zhou, N., & Busino, L. (2019). KLHL6 is a tumor suppressor gene in diffuse large B-cell lymphoma. Cell Cycle, 18, 249 - 256. https://doi.org/10.1080/15384101.2019.1568765.*
... ...
\ No newline at end of file
0
+2. *Choi, J., Zhou, N., & Busino, L. (2019). KLHL6 is a tumor suppressor gene in diffuse large B-cell lymphoma. Cell Cycle, 18, 249 - 256. https://doi.org/10.1080/15384101.2019.1568765.*## KLHL6 Expression
1
+![image](images/gene_expression/KLHL6_by_pathology.svg)
KMT2C.md
... ...
@@ -50,3 +50,5 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/K
50 50
3. *https://pubpeer.com/publications/C1086AC68FD7082E3811E097EA4EA0*
51 51
4. *Lee MJ, Koff JL, Switchenko JM, Jhaney CI, Harkins RA, Patel SP, Dave SS, Flowers CR. Genome-defined African ancestry is associated with distinct mutations and worse survival in patients with diffuse large B-cell lymphoma. Cancer. 2020 Aug 1;126(15):3493-3503. doi: 10.1002/cncr.32866. Epub 2020 May 29. PMID: 32469082; PMCID: PMC7494053.*
52 52
5. *Zhang J, Jima D, Moffitt AB, Liu Q, Czader M, Hsi ED, Fedoriw Y, Dunphy CH, Richards KL, Gill JI, Sun Z, Love C, Scotland P, Lock E, Levy S, Hsu DS, Dunson D, Dave SS. The genomic landscape of mantle cell lymphoma is related to the epigenetically determined chromatin state of normal B cells. Blood. 2014 May 8;123(19):2988-96. doi: 10.1182/blood-2013-07-517177. Epub 2014 Mar 28. PMID: 24682267; PMCID: PMC4014841.*
53
+## KMT2C Expression
54
+![image](images/gene_expression/KMT2C_by_pathology.svg)
KMT2D.md
... ...
@@ -50,3 +50,5 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/K
50 50
1. *Morin RD, Mendez-Lago M, Mungall AJ, Goya R, Mungall KL, Corbett RD, Johnson NA, Severson TM, Chiu R, Field M, Jackman S, Krzywinski M, Scott DW, Trinh DL, Tamura-Wells J, Li S, Firme MR, Rogic S, Griffith M, Chan S, Yakovenko O, Meyer IM, Zhao EY, Smailus D, Moksa M, Chittaranjan S, Rimsza L, Brooks-Wilson A, Spinelli JJ, Ben-Neriah S, Meissner B, Woolcock B, Boyle M, McDonald H, Tam A, Zhao Y, Delaney A, Zeng T, Tse K, Butterfield Y, Birol I, Holt R, Schein J, Horsman DE, Moore R, Jones SJ, Connors JM, Hirst M, Gascoyne RD, Marra MA. Frequent mutation of histone-modifying genes in non-Hodgkin lymphoma. Nature. 2011 Jul 27;476(7360):298-303. doi: 10.1038/nature10351. PMID: 21796119; PMCID: PMC3210554.*
51 51
2. *You, H., Xu-Monette, Z., Wei, L., Nunns, H., Nagy, M., Bhagat, G., Fang, X., Zhu, F., Visco, C., Tzankov, A., Dybkaer, K., Chiu, A., Tam, W., Zu, Y., Hsi, E., Hagemeister, F., Huh, J., Ponzoni, M., Ferreri, A., Møller, M., Parsons, B., Krieken, J., Piris, M., Winter, J., Li, Y., Au, Q., Xu, B., Albitar, M., & Young, K. (2021). Genomic complexity is associated with epigenetic regulator mutations and poor prognosis in diffuse large B-cell lymphoma. Oncoimmunology, 10. https://doi.org/10.1080/2162402X.2021.1928365.*
52 52
3. *Rushton CK, Arthur SE, Alcaide M, Cheung M, Jiang A, Coyle KM, Cleary KLS, Thomas N, Hilton LK, Michaud N, Daigle S, Davidson J, Bushell K, Yu S, Rys RN, Jain M, Shepherd L, Marra MA, Kuruvilla J, Crump M, Mann K, Assouline S, Connors JM, Steidl C, Cragg MS, Scott DW, Johnson NA, Morin RD. Genetic and evolutionary patterns of treatment resistance in relapsed B-cell lymphoma. Blood Adv. 2020 Jul 14;4(13):2886-2898. doi: 10.1182/bloodadvances.2020001696. PMID: 32589730; PMCID: PMC7362366.*
53
+## KMT2D Expression
54
+![image](images/gene_expression/KMT2D_by_pathology.svg)
KRAS.md
... ...
@@ -50,3 +50,5 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/K
50 50
51 51
## References
52 52
1. Lohr JG, Stojanov P, Lawrence MS, Auclair D, Chapuy B, Sougnez C, Cruz-Gordillo P, Knoechel B, Asmann YW, Slager SL, Novak AJ, Dogan A, Ansell SM, Link BK, Zou L, Gould J, Saksena G, Stransky N, Rangel-Escareño C, Fernandez-Lopez JC, Hidalgo-Miranda A, Melendez-Zajgla J, Hernández-Lemus E, Schwarz-Cruz y Celis A, Imaz-Rosshandler I, Ojesina AI, Jung J, Pedamallu CS, Lander ES, Habermann TM, Cerhan JR, Shipp MA, Getz G, Golub TR. Discovery and prioritization of somatic mutations in diffuse large B-cell lymphoma (DLBCL) by whole-exome sequencing. Proc Natl Acad Sci U S A. 2012 Mar 6;109(10):3879-84. doi: 10.1073/pnas.1121343109. Epub 2012 Feb 17. PMID: 22343534; PMCID: PMC3309757.
53
+## KRAS Expression
54
+![image](images/gene_expression/KRAS_by_pathology.svg)
LAMA5.md
... ...
@@ -35,3 +35,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
35 35
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/LAMA5.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/LAMA5_hg38.html)
36 36
37 37
![image](images/proteinpaint/LAMA5.svg)
38
+## LAMA5 Expression
39
+![image](images/gene_expression/LAMA5_by_pathology.svg)
LAPTM5.md
... ...
@@ -42,3 +42,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
42 42
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/LAPTM5.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/LAPTM5_hg38.html)
43 43
44 44
![image](images/proteinpaint/LAPTM5.svg)
45
+## LAPTM5 Expression
46
+![image](images/gene_expression/LAPTM5_by_pathology.svg)
LCOR.md
... ...
@@ -39,3 +39,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
39 39
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/LCOR.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/LCOR_hg38.html)
40 40
41 41
![image](images/proteinpaint/LCOR_hg38.svg)
42
+## LCOR Expression
43
+![image](images/gene_expression/LCOR_by_pathology.svg)
LIN54.md
... ...
@@ -35,3 +35,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
35 35
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/LIN54.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/LIN54_hg38.html)
36 36
37 37
![image](images/proteinpaint/LIN54.svg)
38
+## LIN54 Expression
39
+![image](images/gene_expression/LIN54_by_pathology.svg)
LPP.md
... ...
@@ -48,3 +48,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
48 48
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/LPP.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/LPP_hg38.html)
49 49
50 50
![image](images/proteinpaint/LPP.svg)
51
+## LPP Expression
52
+![image](images/gene_expression/LPP_by_pathology.svg)
LRP12.md
... ...
@@ -35,3 +35,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
35 35
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/LRP12.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/LRP12_hg38.html)
36 36
37 37
![image](images/proteinpaint/LRP12.svg)
38
+## LRP12 Expression
39
+![image](images/gene_expression/LRP12_by_pathology.svg)
LRRN3.md
... ...
@@ -35,3 +35,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
35 35
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/LRRN3.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/LRRN3_hg38.html)
36 36
37 37
![image](images/proteinpaint/LRRN3.svg)
38
+## LRRN3 Expression
39
+![image](images/gene_expression/LRRN3_by_pathology.svg)
LYN.md
... ...
@@ -32,3 +32,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
32 32
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/LYN.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/LYN_hg38.html)
33 33
34 34
![image](images/proteinpaint/LYN.svg)
35
+## LYN Expression
36
+![image](images/gene_expression/LYN_by_pathology.svg)
MAGEC1.md
... ...
@@ -41,3 +41,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
41 41
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/MAGEC1.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/MAGEC1_hg38.html)
42 42
43 43
![image](images/proteinpaint/MAGEC1.svg)
44
+## MAGEC1 Expression
45
+![image](images/gene_expression/MAGEC1_by_pathology.svg)
MAGT1.md
... ...
@@ -35,3 +35,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
35 35
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/MAGT1.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/MAGT1_hg38.html)
36 36
37 37
![image](images/proteinpaint/MAGT1.svg)
38
+## MAGT1 Expression
39
+![image](images/gene_expression/MAGT1_by_pathology.svg)
MALAT1.md
... ...
@@ -33,3 +33,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
33 33
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/MALAT1.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/MALAT1_hg38.html)
34 34
35 35
![image](images/proteinpaint/MALAT1.svg)
36
+## MALAT1 Expression
37
+![image](images/gene_expression/MALAT1_by_pathology.svg)
MAP2K1.md
... ...
@@ -43,3 +43,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
43 43
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/MAP2K1.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/MAP2K1_hg38.html)
44 44
45 45
![image](images/proteinpaint/MAP2K1.svg)
46
+## MAP2K1 Expression
47
+![image](images/gene_expression/MAP2K1_by_pathology.svg)
MAP3K6.md
... ...
@@ -34,3 +34,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
34 34
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/MAP3K6.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/MAP3K6_hg38.html)
35 35
36 36
![image](images/proteinpaint/MAP3K6.svg)
37
+## MAP3K6 Expression
38
+![image](images/gene_expression/MAP3K6_by_pathology.svg)
MAP4K4.md
... ...
@@ -35,3 +35,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
35 35
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/MAP4K4.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/MAP4K4_hg38.html)
36 36
37 37
![image](images/proteinpaint/MAP4K4.svg)
38
+## MAP4K4 Expression
39
+![image](images/gene_expression/MAP4K4_by_pathology.svg)
MAP7D1.md
... ...
@@ -32,3 +32,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
32 32
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/MAP7D1.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/MAP7D1_hg38.html)
33 33
34 34
![image](images/proteinpaint/MAP7D1.svg)
35
+## MAP7D1 Expression
36
+![image](images/gene_expression/MAP7D1_by_pathology.svg)
MARK1.md
... ...
@@ -35,3 +35,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
35 35
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/MARK1.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/MARK1_hg38.html)
36 36
37 37
![image](images/proteinpaint/MARK1.svg)
38
+## MARK1 Expression
39
+![image](images/gene_expression/MARK1_by_pathology.svg)
MCL1.md
... ...
@@ -46,3 +46,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
46 46
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/MCL1.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/MCL1_hg38.html)
47 47
48 48
![image](images/proteinpaint/MCL1.svg)
49
+## MCL1 Expression
50
+![image](images/gene_expression/MCL1_by_pathology.svg)
MECOM.md
... ...
@@ -35,3 +35,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
35 35
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/MECOM.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/MECOM_hg38.html)
36 36
37 37
![image](images/proteinpaint/MECOM.svg)
38
+## MECOM Expression
39
+![image](images/gene_expression/MECOM_by_pathology.svg)
MEF2B.md
... ...
@@ -82,3 +82,5 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/M
82 82
83 83
1. *Morin RD, Mendez-Lago M, Mungall AJ, Goya R, Mungall KL, Corbett RD, Johnson NA, Severson TM, Chiu R, Field M, Jackman S, Krzywinski M, Scott DW, Trinh DL, Tamura-Wells J, Li S, Firme MR, Rogic S, Griffith M, Chan S, Yakovenko O, Meyer IM, Zhao EY, Smailus D, Moksa M, Chittaranjan S, Rimsza L, Brooks-Wilson A, Spinelli JJ, Ben-Neriah S, Meissner B, Woolcock B, Boyle M, McDonald H, Tam A, Zhao Y, Delaney A, Zeng T, Tse K, Butterfield Y, Birol I, Holt R, Schein J, Horsman DE, Moore R, Jones SJ, Connors JM, Hirst M, Gascoyne RD, Marra MA. Frequent mutation of histone-modifying genes in non-Hodgkin lymphoma. Nature. 2011 Jul 27;476(7360):298-303. doi: 10.1038/nature10351. PMID: 21796119; PMCID: PMC3210554.*
84 84
85
+## MEF2B Expression
86
+![image](images/gene_expression/MEF2B_by_pathology.svg)
MEF2C.md
... ...
@@ -43,3 +43,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
43 43
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/MEF2C.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/MEF2C_hg38.html)
44 44
45 45
![image](images/proteinpaint/MEF2C.svg)
46
+## MEF2C Expression
47
+![image](images/gene_expression/MEF2C_by_pathology.svg)
MET.md
... ...
@@ -35,3 +35,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
35 35
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/MET.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/MET_hg38.html)
36 36
37 37
![image](images/proteinpaint/MET.svg)
38
+## MET Expression
39
+![image](images/gene_expression/MET_by_pathology.svg)
MGA.md
... ...
@@ -35,3 +35,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
35 35
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/MGA.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/MGA_hg38.html)
36 36
37 37
![image](images/proteinpaint/MGA.svg)
38
+## MGA Expression
39
+![image](images/gene_expression/MGA_by_pathology.svg)
MGEA5.md
... ...
@@ -32,3 +32,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
32 32
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/MGEA5.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/MGEA5_hg38.html)
33 33
34 34
![image](images/proteinpaint/MGEA5.svg)
35
+## MGEA5 Expression
36
+![image](images/gene_expression/MGEA5_by_pathology.svg)
MIR142.md
... ...
@@ -26,3 +26,5 @@
26 26
27 27
> [!NOTE]
28 28
> First described in BL in 2019 by [Grande BM](https://pubmed.ncbi.nlm.nih.gov/30617194). First described in DLBCL in 2012 by [Kwanhian W](https://pubmed.ncbi.nlm.nih.gov/23342264)
29
+## MIR142 Expression
30
+![image](images/gene_expression/MIR142_by_pathology.svg)
MIR155HG.md
... ...
@@ -33,3 +33,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
33 33
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/MIR155HG.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/MIR155HG_hg38.html)
34 34
35 35
![image](images/proteinpaint/MIR155HG.svg)
36
+## MIR155HG Expression
37
+![image](images/gene_expression/MIR155HG_by_pathology.svg)
MKI67.md
... ...
@@ -36,3 +36,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
36 36
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/MKI67.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/MKI67_hg38.html)
37 37
38 38
![image](images/proteinpaint/MKI67.svg)
39
+## MKI67 Expression
40
+![image](images/gene_expression/MKI67_by_pathology.svg)
MME.md
... ...
@@ -34,3 +34,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
34 34
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/MME.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/MME_hg38.html)
35 35
36 36
![image](images/proteinpaint/MME.svg)
37
+## MME Expression
38
+![image](images/gene_expression/MME_by_pathology.svg)
MPDZ.md
... ...
@@ -35,3 +35,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
35 35
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/MPDZ.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/MPDZ_hg38.html)
36 36
37 37
![image](images/proteinpaint/MPDZ.svg)
38
+## MPDZ Expression
39
+![image](images/gene_expression/MPDZ_by_pathology.svg)
MPEG1.md
... ...
@@ -33,3 +33,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
33 33
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/MPEG1.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/MPEG1_hg38.html)
34 34
35 35
![image](images/proteinpaint/MPEG1.svg)
36
+## MPEG1 Expression
37
+![image](images/gene_expression/MPEG1_by_pathology.svg)
MRGPRF.md
... ...
@@ -32,3 +32,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
32 32
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/MRGPRF.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/MRGPRF_hg38.html)
33 33
34 34
![image](images/proteinpaint/MRGPRF.svg)
35
+## MRGPRF Expression
36
+![image](images/gene_expression/MRGPRF_by_pathology.svg)
MS4A1.md
... ...
@@ -37,3 +37,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
37 37
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/MS4A1.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/MS4A1_hg38.html)
38 38
39 39
![image](images/proteinpaint/MS4A1.svg)
40
+## MS4A1 Expression
41
+![image](images/gene_expression/MS4A1_by_pathology.svg)
MSH2.md
... ...
@@ -35,3 +35,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
35 35
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/MSH2.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/MSH2_hg38.html)
36 36
37 37
![image](images/proteinpaint/MSH2.svg)
38
+## MSH2 Expression
39
+![image](images/gene_expression/MSH2_by_pathology.svg)
MSH6.md
... ...
@@ -35,3 +35,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
35 35
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/MSH6.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/MSH6_hg38.html)
36 36
37 37
![image](images/proteinpaint/MSH6.svg)
38
+## MSH6 Expression
39
+![image](images/gene_expression/MSH6_by_pathology.svg)
MTOR.md
... ...
@@ -45,3 +45,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
45 45
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/MTOR.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/MTOR_hg38.html)
46 46
47 47
![image](images/proteinpaint/MTOR.svg)
48
+## MTOR Expression
49
+![image](images/gene_expression/MTOR_by_pathology.svg)
MYB.md
... ...
@@ -35,3 +35,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
35 35
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/MYB.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/MYB_hg38.html)
36 36
37 37
![image](images/proteinpaint/MYB.svg)
38
+## MYB Expression
39
+![image](images/gene_expression/MYB_by_pathology.svg)
MYBPC2.md
... ...
@@ -35,3 +35,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
35 35
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/MYBPC2.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/MYBPC2_hg38.html)
36 36
37 37
![image](images/proteinpaint/MYBPC2.svg)
38
+## MYBPC2 Expression
39
+![image](images/gene_expression/MYBPC2_by_pathology.svg)
MYCBP2.md
... ...
@@ -32,3 +32,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
32 32
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/MYCBP2.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/MYCBP2_hg38.html)
33 33
34 34
![image](images/proteinpaint/MYCBP2.svg)
35
+## MYCBP2 Expression
36
+![image](images/gene_expression/MYCBP2_by_pathology.svg)
MYD88.md
... ...
@@ -46,3 +46,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
46 46
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/MYD88.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/MYD88_hg38.html)
47 47
48 48
![image](images/proteinpaint/MYD88.svg)
49
+## MYD88 Expression
50
+![image](images/gene_expression/MYD88_by_pathology.svg)
MYH10.md
... ...
@@ -34,3 +34,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
34 34
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/MYH10.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/MYH10_hg38.html)
35 35
36 36
![image](images/proteinpaint/MYH10.svg)
37
+## MYH10 Expression
38
+![image](images/gene_expression/MYH10_by_pathology.svg)
MYO18A.md
... ...
@@ -34,3 +34,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
34 34
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/MYO18A.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/MYO18A_hg38.html)
35 35
36 36
![image](images/proteinpaint/MYO18A.svg)
37
+## MYO18A Expression
38
+![image](images/gene_expression/MYO18A_by_pathology.svg)
MYO1E.md
... ...
@@ -41,3 +41,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
41 41
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/MYO1E.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/MYO1E_hg38.html)
42 42
43 43
![image](images/proteinpaint/MYO1E.svg)
44
+## MYO1E Expression
45
+![image](images/gene_expression/MYO1E_by_pathology.svg)
MYOM2.md
... ...
@@ -33,3 +33,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
33 33
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/MYOM2.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/MYOM2_hg38.html)
34 34
35 35
![image](images/proteinpaint/MYOM2.svg)
36
+## MYOM2 Expression
37
+![image](images/gene_expression/MYOM2_by_pathology.svg)
N2RF2.md
... ...
@@ -29,3 +29,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
29 29
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/N2RF2.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/N2RF2_hg38.html)
30 30
31 31
![image](images/proteinpaint/N2RF2.svg)
32
+## N2RF2 Expression
33
+![image](images/gene_expression/N2RF2_by_pathology.svg)
NANOG.md
... ...
@@ -35,3 +35,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
35 35
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/NANOG.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/NANOG_hg38.html)
36 36
37 37
![image](images/proteinpaint/NANOG.svg)
38
+## NANOG Expression
39
+![image](images/gene_expression/NANOG_by_pathology.svg)
NAV1.md
... ...
@@ -35,3 +35,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
35 35
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/NAV1.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/NAV1_hg38.html)
36 36
37 37
![image](images/proteinpaint/NAV1.svg)
38
+## NAV1 Expression
39
+![image](images/gene_expression/NAV1_by_pathology.svg)
NBEAL1.md
... ...
@@ -34,3 +34,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
34 34
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/NBEAL1.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/NBEAL1_hg38.html)
35 35
36 36
![image](images/proteinpaint/NBEAL1.svg)
37
+## NBEAL1 Expression
38
+![image](images/gene_expression/NBEAL1_by_pathology.svg)
NCOA3.md
... ...
@@ -37,3 +37,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
37 37
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/NCOA3.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/NCOA3_hg38.html)
38 38
39 39
![image](images/proteinpaint/NCOA3.svg)
40
+## NCOA3 Expression
41
+![image](images/gene_expression/NCOA3_by_pathology.svg)
NCOR1.md
... ...
@@ -35,3 +35,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
35 35
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/NCOR1.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/NCOR1_hg38.html)
36 36
37 37
![image](images/proteinpaint/NCOR1.svg)
38
+## NCOR1 Expression
39
+![image](images/gene_expression/NCOR1_by_pathology.svg)
NCOR2.md
... ...
@@ -44,3 +44,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
44 44
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/NCOR2.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/NCOR2_hg38.html)
45 45
46 46
![image](images/proteinpaint/NCOR2.svg)
47
+## NCOR2 Expression
48
+![image](images/gene_expression/NCOR2_by_pathology.svg)
NEAT1.md
... ...
@@ -33,3 +33,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
33 33
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/NEAT1.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/NEAT1_hg38.html)
34 34
35 35
![image](images/proteinpaint/NEAT1.svg)
36
+## NEAT1 Expression
37
+![image](images/gene_expression/NEAT1_by_pathology.svg)
NF1.md
... ...
@@ -35,3 +35,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
35 35
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/NF1.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/NF1_hg38.html)
36 36
37 37
![image](images/proteinpaint/NF1.svg)
38
+## NF1 Expression
39
+![image](images/gene_expression/NF1_by_pathology.svg)
NFKB1.md
... ...
@@ -41,3 +41,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
41 41
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/NFKB1.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/NFKB1_hg38.html)
42 42
43 43
![image](images/proteinpaint/NFKB1.svg)
44
+## NFKB1 Expression
45
+![image](images/gene_expression/NFKB1_by_pathology.svg)
NFKB2.md
... ...
@@ -35,3 +35,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
35 35
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/NFKB2.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/NFKB2_hg38.html)
36 36
37 37
![image](images/proteinpaint/NFKB2.svg)
38
+## NFKB2 Expression
39
+![image](images/gene_expression/NFKB2_by_pathology.svg)
NFKBIA.md
... ...
@@ -41,3 +41,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
41 41
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/NFKBIA.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/NFKBIA_hg38.html)
42 42
43 43
![image](images/proteinpaint/NFKBIA.svg)
44
+## NFKBIA Expression
45
+![image](images/gene_expression/NFKBIA_by_pathology.svg)
NFKBIE.md
... ...
@@ -37,3 +37,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
37 37
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/NFKBIE.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/NFKBIE_hg38.html)
38 38
39 39
![image](images/proteinpaint/NFKBIE.svg)
40
+## NFKBIE Expression
41
+![image](images/gene_expression/NFKBIE_by_pathology.svg)
NFKBIZ.md
... ...
@@ -40,3 +40,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
40 40
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/NFKBIZ.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/NFKBIZ_hg38.html)
41 41
42 42
![image](images/proteinpaint/NFKBIZ.svg)
43
+## NFKBIZ Expression
44
+![image](images/gene_expression/NFKBIZ_by_pathology.svg)
NIN.md
... ...
@@ -32,3 +32,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
32 32
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/NIN.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/NIN_hg38.html)
33 33
34 34
![image](images/proteinpaint/NIN.svg)
35
+## NIN Expression
36
+![image](images/gene_expression/NIN_by_pathology.svg)
NLRC5.md
... ...
@@ -32,3 +32,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
32 32
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/NLRC5.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/NLRC5_hg38.html)
33 33
34 34
![image](images/proteinpaint/NLRC5.svg)
35
+## NLRC5 Expression
36
+![image](images/gene_expression/NLRC5_by_pathology.svg)
NLRP5.md
... ...
@@ -35,3 +35,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
35 35
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/NLRP5.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/NLRP5_hg38.html)
36 36
37 37
![image](images/proteinpaint/NLRP5.svg)
38
+## NLRP5 Expression
39
+![image](images/gene_expression/NLRP5_by_pathology.svg)
NLRP8.md
... ...
@@ -35,3 +35,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
35 35
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/NLRP8.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/NLRP8_hg38.html)
36 36
37 37
![image](images/proteinpaint/NLRP8.svg)
38
+## NLRP8 Expression
39
+![image](images/gene_expression/NLRP8_by_pathology.svg)
NOA1.md
... ...
@@ -34,3 +34,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
34 34
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/NOA1.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/NOA1_hg38.html)
35 35
36 36
![image](images/proteinpaint/NOA1.svg)
37
+## NOA1 Expression
38
+![image](images/gene_expression/NOA1_by_pathology.svg)
NOL9.md
... ...
@@ -40,3 +40,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
40 40
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/NOL9.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/NOL9_hg38.html)
41 41
42 42
![image](images/proteinpaint/NOL9.svg)
43
+## NOL9 Expression
44
+![image](images/gene_expression/NOL9_by_pathology.svg)
NOTCH1.md
... ...
@@ -47,3 +47,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
47 47
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/NOTCH1.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/NOTCH1_hg38.html)
48 48
49 49
![image](images/proteinpaint/NOTCH1.svg)
50
+## NOTCH1 Expression
51
+![image](images/gene_expression/NOTCH1_by_pathology.svg)
NOTCH2.md
... ...
@@ -46,3 +46,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
46 46
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/NOTCH2.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/NOTCH2_hg38.html)
47 47
48 48
![image](images/proteinpaint/NOTCH2.svg)
49
+## NOTCH2 Expression
50
+![image](images/gene_expression/NOTCH2_by_pathology.svg)
NRXN2.md
... ...
@@ -34,3 +34,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
34 34
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/NRXN2.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/NRXN2_hg38.html)
35 35
36 36
![image](images/proteinpaint/NRXN2.svg)
37
+## NRXN2 Expression
38
+![image](images/gene_expression/NRXN2_by_pathology.svg)
NSD2.md
... ...
@@ -28,3 +28,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
28 28
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/NSD2.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/NSD2_hg38.html)
29 29
30 30
![image](images/proteinpaint/NSD2.svg)
31
+## NSD2 Expression
32
+![image](images/gene_expression/NSD2_by_pathology.svg)
ODZ3.md
... ...
@@ -22,3 +22,5 @@
22 22
23 23
> [!NOTE]
24 24
> First described in DLBCL in 2013 by [Morin RD](https://pubmed.ncbi.nlm.nih.gov/23699601)
25
+## ODZ3 Expression
26
+![image](images/gene_expression/ODZ3_by_pathology.svg)
OGDHL.md
... ...
@@ -32,3 +32,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
32 32
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/OGDHL.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/OGDHL_hg38.html)
33 33
34 34
![image](images/proteinpaint/OGDHL.svg)
35
+## OGDHL Expression
36
+![image](images/gene_expression/OGDHL_by_pathology.svg)
OR8H2.md
... ...
@@ -32,3 +32,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
32 32
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/OR8H2.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/OR8H2_hg38.html)
33 33
34 34
![image](images/proteinpaint/OR8H2.svg)
35
+## OR8H2 Expression
36
+![image](images/gene_expression/OR8H2_by_pathology.svg)
OSBPL10.md
... ...
@@ -43,3 +43,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
43 43
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/OSBPL10.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/OSBPL10_hg38.html)
44 44
45 45
![image](images/proteinpaint/OSBPL10.svg)
46
+## OSBPL10 Expression
47
+![image](images/gene_expression/OSBPL10_by_pathology.svg)
P2RX5.md
... ...
@@ -40,3 +40,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
40 40
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/P2RX5.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/P2RX5_hg38.html)
41 41
42 42
![image](images/proteinpaint/P2RX5.svg)
43
+## P2RX5 Expression
44
+![image](images/gene_expression/P2RX5_by_pathology.svg)
P2RY2.md
... ...
@@ -34,3 +34,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
34 34
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/P2RY2.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/P2RY2_hg38.html)
35 35
36 36
![image](images/proteinpaint/P2RY2.svg)
37
+## P2RY2 Expression
38
+![image](images/gene_expression/P2RY2_by_pathology.svg)
P2RY8.md
... ...
@@ -41,3 +41,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
41 41
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/P2RY8.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/P2RY8_hg38.html)
42 42
43 43
![image](images/proteinpaint/P2RY8.svg)
44
+## P2RY8 Expression
45
+![image](images/gene_expression/P2RY8_by_pathology.svg)
PABPC4L.md
... ...
@@ -34,3 +34,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
34 34
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/PABPC4L.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/PABPC4L_hg38.html)
35 35
36 36
![image](images/proteinpaint/PABPC4L.svg)
37
+## PABPC4L Expression
38
+![image](images/gene_expression/PABPC4L_by_pathology.svg)
PAPOLG.md
... ...
@@ -35,3 +35,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
35 35
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/PAPOLG.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/PAPOLG_hg38.html)
36 36
37 37
![image](images/proteinpaint/PAPOLG.svg)
38
+## PAPOLG Expression
39
+![image](images/gene_expression/PAPOLG_by_pathology.svg)
PASK.md
... ...
@@ -35,3 +35,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
35 35
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/PASK.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/PASK_hg38.html)
36 36
37 37
![image](images/proteinpaint/PASK.svg)
38
+## PASK Expression
39
+![image](images/gene_expression/PASK_by_pathology.svg)
PAX5.md
... ...
@@ -44,3 +44,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
44 44
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/PAX5.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/PAX5_hg38.html)
45 45
46 46
![image](images/proteinpaint/PAX5.svg)
47
+## PAX5 Expression
48
+![image](images/gene_expression/PAX5_by_pathology.svg)
PC.md
... ...
@@ -34,3 +34,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
34 34
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/PC.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/PC_hg38.html)
35 35
36 36
![image](images/proteinpaint/PC.svg)
37
+## PC Expression
38
+![image](images/gene_expression/PC_by_pathology.svg)
PCBP1.md
... ...
@@ -48,3 +48,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
48 48
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/PCBP1.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/PCBP1_hg38.html)
49 49
50 50
![image](images/proteinpaint/PCBP1.svg)
51
+## PCBP1 Expression
52
+![image](images/gene_expression/PCBP1_by_pathology.svg)
PCDHA11.md
... ...
@@ -34,3 +34,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
34 34
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/PCDHA11.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/PCDHA11_hg38.html)
35 35
36 36
![image](images/proteinpaint/PCDHA11.svg)
37
+## PCDHA11 Expression
38
+![image](images/gene_expression/PCDHA11_by_pathology.svg)
PCDHB11.md
... ...
@@ -35,3 +35,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
35 35
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/PCDHB11.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/PCDHB11_hg38.html)
36 36
37 37
![image](images/proteinpaint/PCDHB11.svg)
38
+## PCDHB11 Expression
39
+![image](images/gene_expression/PCDHB11_by_pathology.svg)
PCDHB2.md
... ...
@@ -32,3 +32,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
32 32
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/PCDHB2.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/PCDHB2_hg38.html)
33 33
34 34
![image](images/proteinpaint/PCDHB2.svg)
35
+## PCDHB2 Expression
36
+![image](images/gene_expression/PCDHB2_by_pathology.svg)
PCLO.md
... ...
@@ -45,3 +45,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
45 45
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/PCLO.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/PCLO_hg38.html)
46 46
47 47
![image](images/proteinpaint/PCLO.svg)
48
+## PCLO Expression
49
+![image](images/gene_expression/PCLO_by_pathology.svg)
PDCD11.md
... ...
@@ -34,3 +34,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
34 34
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/PDCD11.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/PDCD11_hg38.html)
35 35
36 36
![image](images/proteinpaint/PDCD11.svg)
37
+## PDCD11 Expression
38
+![image](images/gene_expression/PDCD11_by_pathology.svg)
PDE4DIP.md
... ...
@@ -35,3 +35,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
35 35
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/PDE4DIP.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/PDE4DIP_hg38.html)
36 36
37 37
![image](images/proteinpaint/PDE4DIP.svg)
38
+## PDE4DIP Expression
39
+![image](images/gene_expression/PDE4DIP_by_pathology.svg)
PDS5B.md
... ...
@@ -37,3 +37,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
37 37
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/PDS5B.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/PDS5B_hg38.html)
38 38
39 39
![image](images/proteinpaint/PDS5B.svg)
40
+## PDS5B Expression
41
+![image](images/gene_expression/PDS5B_by_pathology.svg)
PDZRN3.md
... ...
@@ -34,3 +34,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
34 34
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/PDZRN3.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/PDZRN3_hg38.html)
35 35
36 36
![image](images/proteinpaint/PDZRN3.svg)
37
+## PDZRN3 Expression
38
+![image](images/gene_expression/PDZRN3_by_pathology.svg)
PHF6.md
... ...
@@ -39,3 +39,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
39 39
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/PHF6.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/PHF6_hg38.html)
40 40
41 41
![image](images/proteinpaint/PHF6.svg)
42
+## PHF6 Expression
43
+![image](images/gene_expression/PHF6_by_pathology.svg)
PIK3CD.md
... ...
@@ -41,3 +41,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
41 41
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/PIK3CD.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/PIK3CD_hg38.html)
42 42
43 43
![image](images/proteinpaint/PIK3CD.svg)
44
+## PIK3CD Expression
45
+![image](images/gene_expression/PIK3CD_by_pathology.svg)
PIK3R1.md
... ...
@@ -39,3 +39,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
39 39
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/PIK3R1.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/PIK3R1_hg38.html)
40 40
41 41
![image](images/proteinpaint/PIK3R1.svg)
42
+## PIK3R1 Expression
43
+![image](images/gene_expression/PIK3R1_by_pathology.svg)
PIM1.md
... ...
@@ -73,3 +73,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
73 73
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/PIM1.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/PIM1_hg38.html)
74 74
75 75
![image](images/proteinpaint/PIM1.svg)
76
+## PIM1 Expression
77
+![image](images/gene_expression/PIM1_by_pathology.svg)
PIM2.md
... ...
@@ -39,3 +39,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
39 39
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/PIM2.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/PIM2_hg38.html)
40 40
41 41
![image](images/proteinpaint/PIM2.svg)
42
+## PIM2 Expression
43
+![image](images/gene_expression/PIM2_by_pathology.svg)
PKD1.md
... ...
@@ -35,3 +35,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
35 35
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/PKD1.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/PKD1_hg38.html)
36 36
37 37
![image](images/proteinpaint/PKD1.svg)
38
+## PKD1 Expression
39
+![image](images/gene_expression/PKD1_by_pathology.svg)
PLCG2.md
... ...
@@ -40,3 +40,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
40 40
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/PLCG2.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/PLCG2_hg38.html)
41 41
42 42
![image](images/proteinpaint/PLCG2.svg)
43
+## PLCG2 Expression
44
+![image](images/gene_expression/PLCG2_by_pathology.svg)
PLXNB3.md
... ...
@@ -32,3 +32,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
32 32
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/PLXNB3.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/PLXNB3_hg38.html)
33 33
34 34
![image](images/proteinpaint/PLXNB3.svg)
35
+## PLXNB3 Expression
36
+![image](images/gene_expression/PLXNB3_by_pathology.svg)
PMAIP1.md
... ...
@@ -31,3 +31,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
31 31
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/PMAIP1.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/PMAIP1_hg38.html)
32 32
33 33
![image](images/proteinpaint/PMAIP1.svg)
34
+## PMAIP1 Expression
35
+![image](images/gene_expression/PMAIP1_by_pathology.svg)
PNPO.md
... ...
@@ -35,3 +35,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
35 35
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/PNPO.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/PNPO_hg38.html)
36 36
37 37
![image](images/proteinpaint/PNPO.svg)
38
+## PNPO Expression
39
+![image](images/gene_expression/PNPO_by_pathology.svg)
POGZ.md
... ...
@@ -35,3 +35,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
35 35
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/POGZ.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/POGZ_hg38.html)
36 36
37 37
![image](images/proteinpaint/POGZ.svg)
38
+## POGZ Expression
39
+![image](images/gene_expression/POGZ_by_pathology.svg)
POLRMT.md
... ...
@@ -34,3 +34,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
34 34
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/POLRMT.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/POLRMT_hg38.html)
35 35
36 36
![image](images/proteinpaint/POLRMT.svg)
37
+## POLRMT Expression
38
+![image](images/gene_expression/POLRMT_by_pathology.svg)
POR.md
... ...
@@ -34,3 +34,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
34 34
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/POR.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/POR_hg38.html)
35 35
36 36
![image](images/proteinpaint/POR.svg)
37
+## POR Expression
38
+![image](images/gene_expression/POR_by_pathology.svg)
POT1.md
... ...
@@ -32,3 +32,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
32 32
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/POT1.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/POT1_hg38.html)
33 33
34 34
![image](images/proteinpaint/POT1.svg)
35
+## POT1 Expression
36
+![image](images/gene_expression/POT1_by_pathology.svg)
POU2AF1.md
... ...
@@ -52,3 +52,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
52 52
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/POU2AF1.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/POU2AF1_hg38.html)
53 53
54 54
![image](images/proteinpaint/POU2AF1.svg)
55
+## POU2AF1 Expression
56
+![image](images/gene_expression/POU2AF1_by_pathology.svg)
POU2F2.md
... ...
@@ -44,3 +44,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
44 44
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/POU2F2.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/POU2F2_hg38.html)
45 45
46 46
![image](images/proteinpaint/POU2F2.svg)
47
+## POU2F2 Expression
48
+![image](images/gene_expression/POU2F2_by_pathology.svg)
PPP1R9B.md
... ...
@@ -30,3 +30,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
30 30
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/PPP1R9B.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/PPP1R9B_hg38.html)
31 31
32 32
![image](images/proteinpaint/PPP1R9B.svg)
33
+## PPP1R9B Expression
34
+![image](images/gene_expression/PPP1R9B_by_pathology.svg)
PPP4C.md
... ...
@@ -37,3 +37,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
37 37
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/PPP4C.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/PPP4C_hg38.html)
38 38
39 39
![image](images/proteinpaint/PPP4C.svg)
40
+## PPP4C Expression
41
+![image](images/gene_expression/PPP4C_by_pathology.svg)
PPP6R2.md
... ...
@@ -34,3 +34,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
34 34
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/PPP6R2.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/PPP6R2_hg38.html)
35 35
36 36
![image](images/proteinpaint/PPP6R2.svg)
37
+## PPP6R2 Expression
38
+![image](images/gene_expression/PPP6R2_by_pathology.svg)
PRDM1.md
... ...
@@ -51,3 +51,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
51 51
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/PRDM1.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/PRDM1_hg38.html)
52 52
53 53
![image](images/proteinpaint/PRDM1.svg)
54
+## PRDM1 Expression
55
+![image](images/gene_expression/PRDM1_by_pathology.svg)
PREX1.md
... ...
@@ -34,3 +34,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
34 34
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/PREX1.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/PREX1_hg38.html)
35 35
36 36
![image](images/proteinpaint/PREX1.svg)
37
+## PREX1 Expression
38
+![image](images/gene_expression/PREX1_by_pathology.svg)
PRKCB.md
... ...
@@ -35,3 +35,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
35 35
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/PRKCB.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/PRKCB_hg38.html)
36 36
37 37
![image](images/proteinpaint/PRKCB.svg)
38
+## PRKCB Expression
39
+![image](images/gene_expression/PRKCB_by_pathology.svg)
PRKCD.md
... ...
@@ -31,3 +31,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
31 31
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/PRKCD.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/PRKCD_hg38.html)
32 32
33 33
![image](images/proteinpaint/PRKCD.svg)
34
+## PRKCD Expression
35
+![image](images/gene_expression/PRKCD_by_pathology.svg)
PRKDC.md
... ...
@@ -37,3 +37,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
37 37
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/PRKDC.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/PRKDC_hg38.html)
38 38
39 39
![image](images/proteinpaint/PRKDC.svg)
40
+## PRKDC Expression
41
+![image](images/gene_expression/PRKDC_by_pathology.svg)
PRPS1.md
... ...
@@ -35,3 +35,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
35 35
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/PRPS1.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/PRPS1_hg38.html)
36 36
37 37
![image](images/proteinpaint/PRPS1.svg)
38
+## PRPS1 Expression
39
+![image](images/gene_expression/PRPS1_by_pathology.svg)
PRSS22.md
... ...
@@ -34,3 +34,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
34 34
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/PRSS22.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/PRSS22_hg38.html)
35 35
36 36
![image](images/proteinpaint/PRSS22.svg)
37
+## PRSS22 Expression
38
+![image](images/gene_expression/PRSS22_by_pathology.svg)
PTEN.md
... ...
@@ -36,3 +36,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
36 36
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/PTEN.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/PTEN_hg38.html)
37 37
38 38
![image](images/proteinpaint/PTEN.svg)
39
+## PTEN Expression
40
+![image](images/gene_expression/PTEN_by_pathology.svg)
PTMA.md
... ...
@@ -37,3 +37,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
37 37
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/PTMA.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/PTMA_hg38.html)
38 38
39 39
![image](images/proteinpaint/PTMA.svg)
40
+## PTMA Expression
41
+![image](images/gene_expression/PTMA_by_pathology.svg)
PTPN1.md
... ...
@@ -37,3 +37,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
37 37
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/PTPN1.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/PTPN1_hg38.html)
38 38
39 39
![image](images/proteinpaint/PTPN1.svg)
40
+## PTPN1 Expression
41
+![image](images/gene_expression/PTPN1_by_pathology.svg)
PTPN23.md
... ...
@@ -35,3 +35,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
35 35
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/PTPN23.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/PTPN23_hg38.html)
36 36
37 37
![image](images/proteinpaint/PTPN23.svg)
38
+## PTPN23 Expression
39
+![image](images/gene_expression/PTPN23_by_pathology.svg)
PTPN6.md
... ...
@@ -35,3 +35,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
35 35
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/PTPN6.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/PTPN6_hg38.html)
36 36
37 37
![image](images/proteinpaint/PTPN6.svg)
38
+## PTPN6 Expression
39
+![image](images/gene_expression/PTPN6_by_pathology.svg)
PTPRD.md
... ...
@@ -41,3 +41,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
41 41
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/PTPRD.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/PTPRD_hg38.html)
42 42
43 43
![image](images/proteinpaint/PTPRD.svg)
44
+## PTPRD Expression
45
+![image](images/gene_expression/PTPRD_by_pathology.svg)
PTPRK.md
... ...
@@ -35,3 +35,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
35 35
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/PTPRK.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/PTPRK_hg38.html)
36 36
37 37
![image](images/proteinpaint/PTPRK.svg)
38
+## PTPRK Expression
39
+![image](images/gene_expression/PTPRK_by_pathology.svg)
PTPRN.md
... ...
@@ -34,3 +34,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
34 34
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/PTPRN.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/PTPRN_hg38.html)
35 35
36 36
![image](images/proteinpaint/PTPRN.svg)
37
+## PTPRN Expression
38
+![image](images/gene_expression/PTPRN_by_pathology.svg)
PXDNL.md
... ...
@@ -34,3 +34,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
34 34
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/PXDNL.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/PXDNL_hg38.html)
35 35
36 36
![image](images/proteinpaint/PXDNL.svg)
37
+## PXDNL Expression
38
+![image](images/gene_expression/PXDNL_by_pathology.svg)
PZP.md
... ...
@@ -32,3 +32,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
32 32
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/PZP.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/PZP_hg38.html)
33 33
34 34
![image](images/proteinpaint/PZP.svg)
35
+## PZP Expression
36
+![image](images/gene_expression/PZP_by_pathology.svg)
RAC2.md
... ...
@@ -47,3 +47,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
47 47
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/RAC2.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/RAC2_hg38.html)
48 48
49 49
![image](images/proteinpaint/RAC2.svg)
50
+## RAC2 Expression
51
+![image](images/gene_expression/RAC2_by_pathology.svg)
RAD9A.md
... ...
@@ -35,3 +35,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
35 35
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/RAD9A.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/RAD9A_hg38.html)
36 36
37 37
![image](images/proteinpaint/RAD9A.svg)
38
+## RAD9A Expression
39
+![image](images/gene_expression/RAD9A_by_pathology.svg)
RANBP6.md
... ...
@@ -34,3 +34,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
34 34
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/RANBP6.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/RANBP6_hg38.html)
35 35
36 36
![image](images/proteinpaint/RANBP6.svg)
37
+## RANBP6 Expression
38
+![image](images/gene_expression/RANBP6_by_pathology.svg)
RARA.md
... ...
@@ -35,3 +35,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
35 35
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/RARA.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/RARA_hg38.html)
36 36
37 37
![image](images/proteinpaint/RARA.svg)
38
+## RARA Expression
39
+![image](images/gene_expression/RARA_by_pathology.svg)
RB1.md
... ...
@@ -37,3 +37,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
37 37
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/RB1.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/RB1_hg38.html)
38 38
39 39
![image](images/proteinpaint/RB1.svg)
40
+## RB1 Expression
41
+![image](images/gene_expression/RB1_by_pathology.svg)
RBM6.md
... ...
@@ -32,3 +32,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
32 32
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/RBM6.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/RBM6_hg38.html)
33 33
34 34
![image](images/proteinpaint/RBM6.svg)
35
+## RBM6 Expression
36
+![image](images/gene_expression/RBM6_by_pathology.svg)
RBP3.md
... ...
@@ -34,3 +34,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
34 34
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/RBP3.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/RBP3_hg38.html)
35 35
36 36
![image](images/proteinpaint/RBP3.svg)
37
+## RBP3 Expression
38
+![image](images/gene_expression/RBP3_by_pathology.svg)
RCC.md
... ...
@@ -19,3 +19,5 @@
19 19
20 20
|
21 21
22
+## RCC Expression
23
+![image](images/gene_expression/RCC_by_pathology.svg)
README.md
... ...
@@ -11,3 +11,5 @@
11 11
[hg19 coordinates](ashm_hg19.md)
12 12
13 13
[hg38 coordinates](ashm_hg38.md)
14
+## README Expression
15
+![image](images/gene_expression/README_by_pathology.svg)
RET.md
... ...
@@ -34,3 +34,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
34 34
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/RET.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/RET_hg38.html)
35 35
36 36
![image](images/proteinpaint/RET.svg)
37
+## RET Expression
38
+![image](images/gene_expression/RET_by_pathology.svg)
REV3L.md
... ...
@@ -34,3 +34,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
34 34
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/REV3L.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/REV3L_hg38.html)
35 35
36 36
![image](images/proteinpaint/REV3L.svg)
37
+## REV3L Expression
38
+![image](images/gene_expression/REV3L_by_pathology.svg)
RFTN1.md
... ...
@@ -40,3 +40,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
40 40
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/RFTN1.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/RFTN1_hg38.html)
41 41
42 42
![image](images/proteinpaint/RFTN1.svg)
43
+## RFTN1 Expression
44
+![image](images/gene_expression/RFTN1_by_pathology.svg)
RFX7.md
... ...
@@ -36,3 +36,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
36 36
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/RFX7.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/RFX7_hg38.html)
37 37
38 38
![image](images/proteinpaint/RFX7.svg)
39
+## RFX7 Expression
40
+![image](images/gene_expression/RFX7_by_pathology.svg)
RFXAP.md
... ...
@@ -32,3 +32,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
32 32
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/RFXAP.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/RFXAP_hg38.html)
33 33
34 34
![image](images/proteinpaint/RFXAP.svg)
35
+## RFXAP Expression
36
+![image](images/gene_expression/RFXAP_by_pathology.svg)
RHEX.md
... ...
@@ -24,3 +24,5 @@
24 24
|chr_name|hg19_start|hg19_end |region |regulatory_comment|
25 25
|:--------:|:----------:|:---------:|:-------------------------------------------------------------------------------------------:|:------------------:|
26 26
|chr1 |206285239 |206288105|[TSS](https://genome.ucsc.edu/s/rdmorin/GAMBL%20hg19?position=chr1%3A206285239%2D206288105)|NA |
27
+## RHEX Expression
28
+![image](images/gene_expression/RHEX_by_pathology.svg)
RHOA.md
... ...
@@ -50,3 +50,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
50 50
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/RHOA.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/RHOA_hg38.html)
51 51
52 52
![image](images/proteinpaint/RHOA.svg)
53
+## RHOA Expression
54
+![image](images/gene_expression/RHOA_by_pathology.svg)
RHOH.md
... ...
@@ -37,3 +37,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
37 37
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/RHOH.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/RHOH_hg38.html)
38 38
39 39
![image](images/proteinpaint/RHOH.svg)
40
+## RHOH Expression
41
+![image](images/gene_expression/RHOH_by_pathology.svg)
RNF144B.md
... ...
@@ -39,3 +39,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
39 39
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/RNF144B.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/RNF144B_hg38.html)
40 40
41 41
![image](images/proteinpaint/RNF144B.svg)
42
+## RNF144B Expression
43
+![image](images/gene_expression/RNF144B_by_pathology.svg)
ROBO2.md
... ...
@@ -23,3 +23,5 @@
23 23
24 24
> [!NOTE]
25 25
> First described in MCL in 2014 by [Zhang J](https://pubmed.ncbi.nlm.nih.gov/24682267)
26
+## ROBO2 Expression
27
+![image](images/gene_expression/ROBO2_by_pathology.svg)
RPL10.md
... ...
@@ -34,3 +34,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
34 34
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/RPL10.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/RPL10_hg38.html)
35 35
36 36
![image](images/proteinpaint/RPL10.svg)
37
+## RPL10 Expression
38
+![image](images/gene_expression/RPL10_by_pathology.svg)
RPL22.md
... ...
@@ -31,3 +31,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
31 31
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/RPL22.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/RPL22_hg38.html)
32 32
33 33
![image](images/proteinpaint/RPL22.svg)
34
+## RPL22 Expression
35
+![image](images/gene_expression/RPL22_by_pathology.svg)
RRAGC.md
... ...
@@ -37,3 +37,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
37 37
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/RRAGC.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/RRAGC_hg38.html)
38 38
39 39
![image](images/proteinpaint/RRAGC.svg)
40
+## RRAGC Expression
41
+![image](images/gene_expression/RRAGC_by_pathology.svg)
RUBCNL.md
... ...
@@ -19,3 +19,5 @@
19 19
20 20
|
21 21
22
+## RUBCNL Expression
23
+![image](images/gene_expression/RUBCNL_by_pathology.svg)
RUNX1.md
... ...
@@ -35,3 +35,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
35 35
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/RUNX1.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/RUNX1_hg38.html)
36 36
37 37
![image](images/proteinpaint/RUNX1.svg)
38
+## RUNX1 Expression
39
+![image](images/gene_expression/RUNX1_by_pathology.svg)
S1PR1.md
... ...
@@ -32,3 +32,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
32 32
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/S1PR1.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/S1PR1_hg38.html)
33 33
34 34
![image](images/proteinpaint/S1PR1.svg)
35
+## S1PR1 Expression
36
+![image](images/gene_expression/S1PR1_by_pathology.svg)
S1PR2.md
... ...
@@ -48,3 +48,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
48 48
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/S1PR2.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/S1PR2_hg38.html)
49 49
50 50
![image](images/proteinpaint/S1PR2.svg)
51
+## S1PR2 Expression
52
+![image](images/gene_expression/S1PR2_by_pathology.svg)
SAL3.md
... ...
@@ -28,3 +28,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
28 28
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/SAL3.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/SAL3_hg38.html)
29 29
30 30
![image](images/proteinpaint/SAL3.svg)
31
+## SAL3 Expression
32
+![image](images/gene_expression/SAL3_by_pathology.svg)
SALL3.md
... ...
@@ -36,3 +36,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
36 36
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/SALL3.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/SALL3_hg38.html)
37 37
38 38
![image](images/proteinpaint/SALL3.svg)
39
+## SALL3 Expression
40
+![image](images/gene_expression/SALL3_by_pathology.svg)
SAMD9L.md
... ...
@@ -35,3 +35,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
35 35
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/SAMD9L.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/SAMD9L_hg38.html)
36 36
37 37
![image](images/proteinpaint/SAMD9L.svg)
38
+## SAMD9L Expression
39
+![image](images/gene_expression/SAMD9L_by_pathology.svg)
SAPS2.md
... ...
@@ -28,3 +28,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
28 28
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/SAPS2.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/SAPS2_hg38.html)
29 29
30 30
![image](images/proteinpaint/SAPS2.svg)
31
+## SAPS2 Expression
32
+![image](images/gene_expression/SAPS2_by_pathology.svg)
SARM1.md
... ...
@@ -35,3 +35,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
35 35
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/SARM1.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/SARM1_hg38.html)
36 36
37 37
![image](images/proteinpaint/SARM1.svg)
38
+## SARM1 Expression
39
+![image](images/gene_expression/SARM1_by_pathology.svg)
SBF1.md
... ...
@@ -34,3 +34,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
34 34
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/SBF1.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/SBF1_hg38.html)
35 35
36 36
![image](images/proteinpaint/SBF1.svg)
37
+## SBF1 Expression
38
+![image](images/gene_expression/SBF1_by_pathology.svg)
SEL1L3.md
... ...
@@ -37,3 +37,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
37 37
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/SEL1L3.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/SEL1L3_hg38.html)
38 38
39 39
![image](images/proteinpaint/SEL1L3.svg)
40
+## SEL1L3 Expression
41
+![image](images/gene_expression/SEL1L3_by_pathology.svg)
SEPT10.md
... ...
@@ -31,3 +31,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
31 31
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/SEPT10.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/SEPT10_hg38.html)
32 32
33 33
![image](images/proteinpaint/SEPT10.svg)
34
+## SEPT10 Expression
35
+![image](images/gene_expression/SEPT10_by_pathology.svg)
SEPTIN9.md
... ...
@@ -26,3 +26,5 @@
26 26
|chr17 |75424734 |75440956|[intron-1](https://genome.ucsc.edu/s/rdmorin/GAMBL%20hg19?position=chr17%3A75424734%2D75440956)|active_promoter |
27 27
|chr17 |75443766 |75451177|[intron-2](https://genome.ucsc.edu/s/rdmorin/GAMBL%20hg19?position=chr17%3A75443766%2D75451177)|active_promoter |
28 28
|chr17 |75453203 |75471471|[intron-3](https://genome.ucsc.edu/s/rdmorin/GAMBL%20hg19?position=chr17%3A75453203%2D75471471)|active_promoter |
29
+## SEPTIN9 Expression
30
+![image](images/gene_expression/SEPTIN9_by_pathology.svg)
SERPINA9.md
... ...
@@ -40,3 +40,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
40 40
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/SERPINA9.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/SERPINA9_hg38.html)
41 41
42 42
![image](images/proteinpaint/SERPINA9.svg)
43
+## SERPINA9 Expression
44
+![image](images/gene_expression/SERPINA9_by_pathology.svg)
SESN1.md
... ...
@@ -32,3 +32,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
32 32
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/SESN1.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/SESN1_hg38.html)
33 33
34 34
![image](images/proteinpaint/SESN1.svg)
35
+## SESN1 Expression
36
+![image](images/gene_expression/SESN1_by_pathology.svg)
SETD1B.md
... ...
@@ -42,3 +42,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
42 42
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/SETD1B.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/SETD1B_hg38.html)
43 43
44 44
![image](images/proteinpaint/SETD1B.svg)
45
+## SETD1B Expression
46
+![image](images/gene_expression/SETD1B_by_pathology.svg)
SETD2.md
... ...
@@ -32,3 +32,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
32 32
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/SETD2.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/SETD2_hg38.html)
33 33
34 34
![image](images/proteinpaint/SETD2.svg)
35
+## SETD2 Expression
36
+![image](images/gene_expression/SETD2_by_pathology.svg)
SETD5.md
... ...
@@ -38,3 +38,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
38 38
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/SETD5.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/SETD5_hg38.html)
39 39
40 40
![image](images/proteinpaint/SETD5.svg)
41
+## SETD5 Expression
42
+![image](images/gene_expression/SETD5_by_pathology.svg)
SF3B1.md
... ...
@@ -47,3 +47,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
47 47
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/SF3B1.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/SF3B1_hg38.html)
48 48
49 49
![image](images/proteinpaint/SF3B1.svg)
50
+## SF3B1 Expression
51
+![image](images/gene_expression/SF3B1_by_pathology.svg)
SGK1.md
... ...
@@ -50,3 +50,5 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/S
50 50
## References
51 51
1. *Morin RD, Mendez-Lago M, Mungall AJ, Goya R, Mungall KL, Corbett RD, Johnson NA, Severson TM, Chiu R, Field M, Jackman S, Krzywinski M, Scott DW, Trinh DL, Tamura-Wells J, Li S, Firme MR, Rogic S, Griffith M, Chan S, Yakovenko O, Meyer IM, Zhao EY, Smailus D, Moksa M, Chittaranjan S, Rimsza L, Brooks-Wilson A, Spinelli JJ, Ben-Neriah S, Meissner B, Woolcock B, Boyle M, McDonald H, Tam A, Zhao Y, Delaney A, Zeng T, Tse K, Butterfield Y, Birol I, Holt R, Schein J, Horsman DE, Moore R, Jones SJ, Connors JM, Hirst M, Gascoyne RD, Marra MA. Frequent mutation of histone-modifying genes in non-Hodgkin lymphoma. Nature. 2011 Jul 27;476(7360):298-303. doi: 10.1038/nature10351. PMID: 21796119; PMCID: PMC3210554.*
52 52
53
+## SGK1 Expression
54
+![image](images/gene_expression/SGK1_by_pathology.svg)
SHANK1.md
... ...
@@ -34,3 +34,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
34 34
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/SHANK1.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/SHANK1_hg38.html)
35 35
36 36
![image](images/proteinpaint/SHANK1.svg)
37
+## SHANK1 Expression
38
+![image](images/gene_expression/SHANK1_by_pathology.svg)
SHROOM3.md
... ...
@@ -32,3 +32,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
32 32
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/SHROOM3.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/SHROOM3_hg38.html)
33 33
34 34
![image](images/proteinpaint/SHROOM3.svg)
35
+## SHROOM3 Expression
36
+![image](images/gene_expression/SHROOM3_by_pathology.svg)
SI.md
... ...
@@ -32,3 +32,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
32 32
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/SI.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/SI_hg38.html)
33 33
34 34
![image](images/proteinpaint/SI.svg)
35
+## SI Expression
36
+![image](images/gene_expression/SI_by_pathology.svg)
SIAH2.md
... ...
@@ -35,3 +35,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
35 35
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/SIAH2.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/SIAH2_hg38.html)
36 36
37 37
![image](images/proteinpaint/SIAH2.svg)
38
+## SIAH2 Expression
39
+![image](images/gene_expression/SIAH2_by_pathology.svg)
SIN3A.md
... ...
@@ -39,3 +39,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
39 39
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/SIN3A.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/SIN3A_hg38.html)
40 40
41 41
![image](images/proteinpaint/SIN3A.svg)
42
+## SIN3A Expression
43
+![image](images/gene_expression/SIN3A_by_pathology.svg)
SLC29A2.md
... ...
@@ -34,3 +34,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
34 34
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/SLC29A2.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/SLC29A2_hg38.html)
35 35
36 36
![image](images/proteinpaint/SLC29A2.svg)
37
+## SLC29A2 Expression
38
+![image](images/gene_expression/SLC29A2_by_pathology.svg)
SLC34A2.md
... ...
@@ -35,3 +35,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
35 35
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/SLC34A2.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/SLC34A2_hg38.html)
36 36
37 37
![image](images/proteinpaint/SLC34A2.svg)
38
+## SLC34A2 Expression
39
+![image](images/gene_expression/SLC34A2_by_pathology.svg)
SMARCA4.md
... ...
@@ -43,3 +43,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
43 43
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/SMARCA4.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/SMARCA4_hg38.html)
44 44
45 45
![image](images/proteinpaint/SMARCA4.svg)
46
+## SMARCA4 Expression
47
+![image](images/gene_expression/SMARCA4_by_pathology.svg)
SMARCB1.md
... ...
@@ -32,3 +32,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
32 32
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/SMARCB1.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/SMARCB1_hg38.html)
33 33
34 34
![image](images/proteinpaint/SMARCB1.svg)
35
+## SMARCB1 Expression
36
+![image](images/gene_expression/SMARCB1_by_pathology.svg)
SMC1A.md
... ...
@@ -32,3 +32,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
32 32
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/SMC1A.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/SMC1A_hg38.html)
33 33
34 34
![image](images/proteinpaint/SMC1A.svg)
35
+## SMC1A Expression
36
+![image](images/gene_expression/SMC1A_by_pathology.svg)
SMEK1.md
... ...
@@ -35,3 +35,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
35 35
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/SMEK1.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/SMEK1_hg38.html)
36 36
37 37
![image](images/proteinpaint/SMEK1.svg)
38
+## SMEK1 Expression
39
+![image](images/gene_expression/SMEK1_by_pathology.svg)
SNTB2.md
... ...
@@ -34,3 +34,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
34 34
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/SNTB2.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/SNTB2_hg38.html)
35 35
36 36
![image](images/proteinpaint/SNTB2.svg)
37
+## SNTB2 Expression
38
+![image](images/gene_expression/SNTB2_by_pathology.svg)
SOCS1.md
... ...
@@ -43,3 +43,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
43 43
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/SOCS1.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/SOCS1_hg38.html)
44 44
45 45
![image](images/proteinpaint/SOCS1.svg)
46
+## SOCS1 Expression
47
+![image](images/gene_expression/SOCS1_by_pathology.svg)
SP140.md
... ...
@@ -32,3 +32,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
32 32
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/SP140.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/SP140_hg38.html)
33 33
34 34
![image](images/proteinpaint/SP140.svg)
35
+## SP140 Expression
36
+![image](images/gene_expression/SP140_by_pathology.svg)
SP3.md
... ...
@@ -34,3 +34,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
34 34
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/SP3.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/SP3_hg38.html)
35 35
36 36
![image](images/proteinpaint/SP3.svg)
37
+## SP3 Expression
38
+![image](images/gene_expression/SP3_by_pathology.svg)
SPEN.md
... ...
@@ -40,3 +40,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
40 40
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/SPEN.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/SPEN_hg38.html)
41 41
42 42
![image](images/proteinpaint/SPEN.svg)
43
+## SPEN Expression
44
+![image](images/gene_expression/SPEN_by_pathology.svg)
SRRM2.md
... ...
@@ -37,3 +37,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
37 37
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/SRRM2.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/SRRM2_hg38.html)
38 38
39 39
![image](images/proteinpaint/SRRM2.svg)
40
+## SRRM2 Expression
41
+![image](images/gene_expression/SRRM2_by_pathology.svg)
ST6GAL1.md
... ...
@@ -40,3 +40,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
40 40
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/ST6GAL1.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/ST6GAL1_hg38.html)
41 41
42 42
![image](images/proteinpaint/ST6GAL1.svg)
43
+## ST6GAL1 Expression
44
+![image](images/gene_expression/ST6GAL1_by_pathology.svg)
STAB2.md
... ...
@@ -32,3 +32,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
32 32
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/STAB2.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/STAB2_hg38.html)
33 33
34 34
![image](images/proteinpaint/STAB2.svg)
35
+## STAB2 Expression
36
+![image](images/gene_expression/STAB2_by_pathology.svg)
STAT3.md
... ...
@@ -47,3 +47,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
47 47
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/STAT3.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/STAT3_hg38.html)
48 48
49 49
![image](images/proteinpaint/STAT3.svg)
50
+## STAT3 Expression
51
+![image](images/gene_expression/STAT3_by_pathology.svg)
STAT5B.md
... ...
@@ -35,3 +35,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
35 35
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/STAT5B.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/STAT5B_hg38.html)
36 36
37 37
![image](images/proteinpaint/STAT5B.svg)
38
+## STAT5B Expression
39
+![image](images/gene_expression/STAT5B_by_pathology.svg)
STAT6.md
... ...
@@ -64,3 +64,5 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/S
64 64
## References
65 65
66 66
1. *Morin RD, Assouline S, Alcaide M, Mohajeri A, Johnston RL, Chong L, Grewal J, Yu S, Fornika D, Bushell K, Nielsen TH, Petrogiannis-Haliotis T, Crump M, Tosikyan A, Grande BM, MacDonald D, Rousseau C, Bayat M, Sesques P, Froment R, Albuquerque M, Monczak Y, Oros KK, Greenwood C, Riazalhosseini Y, Arseneault M, Camlioglu E, Constantin A, Pan-Hammarstrom Q, Peng R, Mann KK, Johnson NA. Genetic Landscapes of Relapsed and Refractory Diffuse Large B-Cell Lymphomas. Clin Cancer Res. 2016 May 1;22(9):2290-300. doi: 10.1158/1078-0432.CCR-15-2123. Epub 2015 Dec 8. PMID: 26647218.*
67
+## STAT6 Expression
68
+![image](images/gene_expression/STAT6_by_pathology.svg)
SYK.md
... ...
@@ -35,3 +35,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
35 35
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/SYK.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/SYK_hg38.html)
36 36
37 37
![image](images/proteinpaint/SYK.svg)
38
+## SYK Expression
39
+![image](images/gene_expression/SYK_by_pathology.svg)
SYNCRIP.md
... ...
@@ -34,3 +34,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
34 34
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/SYNCRIP.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/SYNCRIP_hg38.html)
35 35
36 36
![image](images/proteinpaint/SYNCRIP.svg)
37
+## SYNCRIP Expression
38
+![image](images/gene_expression/SYNCRIP_by_pathology.svg)
SYNE1.md
... ...
@@ -32,3 +32,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
32 32
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/SYNE1.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/SYNE1_hg38.html)
33 33
34 34
![image](images/proteinpaint/SYNE1.svg)
35
+## SYNE1 Expression
36
+![image](images/gene_expression/SYNE1_by_pathology.svg)
SYNGAP1.md
... ...
@@ -34,3 +34,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
34 34
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/SYNGAP1.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/SYNGAP1_hg38.html)
35 35
36 36
![image](images/proteinpaint/SYNGAP1.svg)
37
+## SYNGAP1 Expression
38
+![image](images/gene_expression/SYNGAP1_by_pathology.svg)
SYPL1.md
... ...
@@ -35,3 +35,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
35 35
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/SYPL1.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/SYPL1_hg38.html)
36 36
37 37
![image](images/proteinpaint/SYPL1.svg)
38
+## SYPL1 Expression
39
+![image](images/gene_expression/SYPL1_by_pathology.svg)
TAF1.md
... ...
@@ -35,3 +35,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
35 35
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/TAF1.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/TAF1_hg38.html)
36 36
37 37
![image](images/proteinpaint/TAF1.svg)
38
+## TAF1 Expression
39
+![image](images/gene_expression/TAF1_by_pathology.svg)
TAP1.md
... ...
@@ -35,3 +35,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
35 35
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/TAP1.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/TAP1_hg38.html)
36 36
37 37
![image](images/proteinpaint/TAP1.svg)
38
+## TAP1 Expression
39
+![image](images/gene_expression/TAP1_by_pathology.svg)
TBC1D26.md
... ...
@@ -32,3 +32,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
32 32
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/TBC1D26.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/TBC1D26_hg38.html)
33 33
34 34
![image](images/proteinpaint/TBC1D26.svg)
35
+## TBC1D26 Expression
36
+![image](images/gene_expression/TBC1D26_by_pathology.svg)
TBC1D4.md
... ...
@@ -37,3 +37,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
37 37
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/TBC1D4.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/TBC1D4_hg38.html)
38 38
39 39
![image](images/proteinpaint/TBC1D4.svg)
40
+## TBC1D4 Expression
41
+![image](images/gene_expression/TBC1D4_by_pathology.svg)
TBC1D9B.md
... ...
@@ -34,3 +34,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
34 34
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/TBC1D9B.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/TBC1D9B_hg38.html)
35 35
36 36
![image](images/proteinpaint/TBC1D9B.svg)
37
+## TBC1D9B Expression
38
+![image](images/gene_expression/TBC1D9B_by_pathology.svg)
TBL1XR1.md
... ...
@@ -54,3 +54,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
54 54
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/TBL1XR1.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/TBL1XR1_hg38.html)
55 55
56 56
![image](images/proteinpaint/TBL1XR1.svg)
57
+## TBL1XR1 Expression
58
+![image](images/gene_expression/TBL1XR1_by_pathology.svg)
TCF3.md
... ...
@@ -47,3 +47,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
47 47
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/TCF3.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/TCF3_hg38.html)
48 48
49 49
![image](images/proteinpaint/TCF3.svg)
50
+## TCF3 Expression
51
+![image](images/gene_expression/TCF3_by_pathology.svg)
TCL1A.md
... ...
@@ -45,3 +45,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
45 45
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/TCL1A.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/TCL1A_hg38.html)
46 46
47 47
![image](images/proteinpaint/TCL1A.svg)
48
+## TCL1A Expression
49
+![image](images/gene_expression/TCL1A_by_pathology.svg)
TERT.md
... ...
@@ -32,3 +32,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
32 32
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/TERT.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/TERT_hg38.html)
33 33
34 34
![image](images/proteinpaint/TERT.svg)
35
+## TERT Expression
36
+![image](images/gene_expression/TERT_by_pathology.svg)
TET2.md
... ...
@@ -39,3 +39,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
39 39
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/TET2.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/TET2_hg38.html)
40 40
41 41
![image](images/proteinpaint/TET2.svg)
42
+## TET2 Expression
43
+![image](images/gene_expression/TET2_by_pathology.svg)
TFAP4.md
... ...
@@ -34,3 +34,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
34 34
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/TFAP4.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/TFAP4_hg38.html)
35 35
36 36
![image](images/proteinpaint/TFAP4.svg)
37
+## TFAP4 Expression
38
+![image](images/gene_expression/TFAP4_by_pathology.svg)
TGFBR2.md
... ...
@@ -35,3 +35,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
35 35
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/TGFBR2.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/TGFBR2_hg38.html)
36 36
37 37
![image](images/proteinpaint/TGFBR2.svg)
38
+## TGFBR2 Expression
39
+![image](images/gene_expression/TGFBR2_by_pathology.svg)
TIGD6.md
... ...
@@ -34,3 +34,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
34 34
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/TIGD6.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/TIGD6_hg38.html)
35 35
36 36
![image](images/proteinpaint/TIGD6.svg)
37
+## TIGD6 Expression
38
+![image](images/gene_expression/TIGD6_by_pathology.svg)
TIPARP.md
... ...
@@ -35,3 +35,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
35 35
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/TIPARP.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/TIPARP_hg38.html)
36 36
37 37
![image](images/proteinpaint/TIPARP.svg)
38
+## TIPARP Expression
39
+![image](images/gene_expression/TIPARP_by_pathology.svg)
TLR2.md
... ...
@@ -44,3 +44,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
44 44
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/TLR2.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/TLR2_hg38.html)
45 45
46 46
![image](images/proteinpaint/TLR2.svg)
47
+## TLR2 Expression
48
+![image](images/gene_expression/TLR2_by_pathology.svg)
TMEM30A.md
... ...
@@ -51,3 +51,5 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/T
51 51
52 52
## References
53 53
1. *Morin RD, Mendez-Lago M, Mungall AJ, Goya R, Mungall KL, Corbett RD, Johnson NA, Severson TM, Chiu R, Field M, Jackman S, Krzywinski M, Scott DW, Trinh DL, Tamura-Wells J, Li S, Firme MR, Rogic S, Griffith M, Chan S, Yakovenko O, Meyer IM, Zhao EY, Smailus D, Moksa M, Chittaranjan S, Rimsza L, Brooks-Wilson A, Spinelli JJ, Ben-Neriah S, Meissner B, Woolcock B, Boyle M, McDonald H, Tam A, Zhao Y, Delaney A, Zeng T, Tse K, Butterfield Y, Birol I, Holt R, Schein J, Horsman DE, Moore R, Jones SJ, Connors JM, Hirst M, Gascoyne RD, Marra MA. Frequent mutation of histone-modifying genes in non-Hodgkin lymphoma. Nature. 2011 Jul 27;476(7360):298-303. doi: 10.1038/nature10351. PMID: 21796119; PMCID: PMC3210554.*
54
+## TMEM30A Expression
55
+![image](images/gene_expression/TMEM30A_by_pathology.svg)
TMSB4X.md
... ...
@@ -48,3 +48,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
48 48
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/TMSB4X.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/TMSB4X_hg38.html)
49 49
50 50
![image](images/proteinpaint/TMSB4X.svg)
51
+## TMSB4X Expression
52
+![image](images/gene_expression/TMSB4X_by_pathology.svg)
TNFAIP3.md
... ...
@@ -51,4 +51,5 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/T
51 51
52 52
## References
53 53
1.
54
-2. *Morin RD, Mendez-Lago M, Mungall AJ, Goya R, Mungall KL, Corbett RD, Johnson NA, Severson TM, Chiu R, Field M, Jackman S, Krzywinski M, Scott DW, Trinh DL, Tamura-Wells J, Li S, Firme MR, Rogic S, Griffith M, Chan S, Yakovenko O, Meyer IM, Zhao EY, Smailus D, Moksa M, Chittaranjan S, Rimsza L, Brooks-Wilson A, Spinelli JJ, Ben-Neriah S, Meissner B, Woolcock B, Boyle M, McDonald H, Tam A, Zhao Y, Delaney A, Zeng T, Tse K, Butterfield Y, Birol I, Holt R, Schein J, Horsman DE, Moore R, Jones SJ, Connors JM, Hirst M, Gascoyne RD, Marra MA. Frequent mutation of histone-modifying genes in non-Hodgkin lymphoma. Nature. 2011 Jul 27;476(7360):298-303. doi: 10.1038/nature10351. PMID: 21796119; PMCID: PMC3210554.*
... ...
\ No newline at end of file
0
+2. *Morin RD, Mendez-Lago M, Mungall AJ, Goya R, Mungall KL, Corbett RD, Johnson NA, Severson TM, Chiu R, Field M, Jackman S, Krzywinski M, Scott DW, Trinh DL, Tamura-Wells J, Li S, Firme MR, Rogic S, Griffith M, Chan S, Yakovenko O, Meyer IM, Zhao EY, Smailus D, Moksa M, Chittaranjan S, Rimsza L, Brooks-Wilson A, Spinelli JJ, Ben-Neriah S, Meissner B, Woolcock B, Boyle M, McDonald H, Tam A, Zhao Y, Delaney A, Zeng T, Tse K, Butterfield Y, Birol I, Holt R, Schein J, Horsman DE, Moore R, Jones SJ, Connors JM, Hirst M, Gascoyne RD, Marra MA. Frequent mutation of histone-modifying genes in non-Hodgkin lymphoma. Nature. 2011 Jul 27;476(7360):298-303. doi: 10.1038/nature10351. PMID: 21796119; PMCID: PMC3210554.*## TNFAIP3 Expression
1
+![image](images/gene_expression/TNFAIP3_by_pathology.svg)
TNFRSF14.md
... ...
@@ -59,4 +59,5 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/T
59 59
![image](images/proteinpaint/TNFRSF14.svg)
60 60
61 61
## References
62
-1. *Morin RD, Mendez-Lago M, Mungall AJ, Goya R, Mungall KL, Corbett RD, Johnson NA, Severson TM, Chiu R, Field M, Jackman S, Krzywinski M, Scott DW, Trinh DL, Tamura-Wells J, Li S, Firme MR, Rogic S, Griffith M, Chan S, Yakovenko O, Meyer IM, Zhao EY, Smailus D, Moksa M, Chittaranjan S, Rimsza L, Brooks-Wilson A, Spinelli JJ, Ben-Neriah S, Meissner B, Woolcock B, Boyle M, McDonald H, Tam A, Zhao Y, Delaney A, Zeng T, Tse K, Butterfield Y, Birol I, Holt R, Schein J, Horsman DE, Moore R, Jones SJ, Connors JM, Hirst M, Gascoyne RD, Marra MA. Frequent mutation of histone-modifying genes in non-Hodgkin lymphoma. Nature. 2011 Jul 27;476(7360):298-303. doi: 10.1038/nature10351. PMID: 21796119; PMCID: PMC3210554.*
... ...
\ No newline at end of file
0
+1. *Morin RD, Mendez-Lago M, Mungall AJ, Goya R, Mungall KL, Corbett RD, Johnson NA, Severson TM, Chiu R, Field M, Jackman S, Krzywinski M, Scott DW, Trinh DL, Tamura-Wells J, Li S, Firme MR, Rogic S, Griffith M, Chan S, Yakovenko O, Meyer IM, Zhao EY, Smailus D, Moksa M, Chittaranjan S, Rimsza L, Brooks-Wilson A, Spinelli JJ, Ben-Neriah S, Meissner B, Woolcock B, Boyle M, McDonald H, Tam A, Zhao Y, Delaney A, Zeng T, Tse K, Butterfield Y, Birol I, Holt R, Schein J, Horsman DE, Moore R, Jones SJ, Connors JM, Hirst M, Gascoyne RD, Marra MA. Frequent mutation of histone-modifying genes in non-Hodgkin lymphoma. Nature. 2011 Jul 27;476(7360):298-303. doi: 10.1038/nature10351. PMID: 21796119; PMCID: PMC3210554.*## TNFRSF14 Expression
1
+![image](images/gene_expression/TNFRSF14_by_pathology.svg)
TOP2A.md
... ...
@@ -34,3 +34,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
34 34
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/TOP2A.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/TOP2A_hg38.html)
35 35
36 36
![image](images/proteinpaint/TOP2A.svg)
37
+## TOP2A Expression
38
+![image](images/gene_expression/TOP2A_by_pathology.svg)
TOX.md
... ...
@@ -45,3 +45,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
45 45
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/TOX.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/TOX_hg38.html)
46 46
47 47
![image](images/proteinpaint/TOX.svg)
48
+## TOX Expression
49
+![image](images/gene_expression/TOX_by_pathology.svg)
TP53.md
... ...
@@ -45,4 +45,5 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/T
45 45
![image](images/proteinpaint/TP53.svg)
46 46
47 47
## References
48
-1.
... ...
\ No newline at end of file
0
+1. ## TP53 Expression
1
+![image](images/gene_expression/TP53_by_pathology.svg)
TPP1.md
... ...
@@ -32,3 +32,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
32 32
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/TPP1.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/TPP1_hg38.html)
33 33
34 34
![image](images/proteinpaint/TPP1.svg)
35
+## TPP1 Expression
36
+![image](images/gene_expression/TPP1_by_pathology.svg)
TPST2.md
... ...
@@ -34,3 +34,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
34 34
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/TPST2.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/TPST2_hg38.html)
35 35
36 36
![image](images/proteinpaint/TPST2.svg)
37
+## TPST2 Expression
38
+![image](images/gene_expression/TPST2_by_pathology.svg)
TRAF3.md
... ...
@@ -35,3 +35,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
35 35
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/TRAF3.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/TRAF3_hg38.html)
36 36
37 37
![image](images/proteinpaint/TRAF3.svg)
38
+## TRAF3 Expression
39
+![image](images/gene_expression/TRAF3_by_pathology.svg)
TRAF6.md
... ...
@@ -43,3 +43,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
43 43
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/TRAF6.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/TRAF6_hg38.html)
44 44
45 45
![image](images/proteinpaint/TRAF6.svg)
46
+## TRAF6 Expression
47
+![image](images/gene_expression/TRAF6_by_pathology.svg)
TRIP12.md
... ...
@@ -32,3 +32,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
32 32
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/TRIP12.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/TRIP12_hg38.html)
33 33
34 34
![image](images/proteinpaint/TRIP12.svg)
35
+## TRIP12 Expression
36
+![image](images/gene_expression/TRIP12_by_pathology.svg)
TRRAP.md
... ...
@@ -39,3 +39,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
39 39
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/TRRAP.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/TRRAP_hg38.html)
40 40
41 41
![image](images/proteinpaint/TRRAP.svg)
42
+## TRRAP Expression
43
+![image](images/gene_expression/TRRAP_by_pathology.svg)
TTN.md
... ...
@@ -40,3 +40,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
40 40
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/TTN.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/TTN_hg38.html)
41 41
42 42
![image](images/proteinpaint/TTN.svg)
43
+## TTN Expression
44
+![image](images/gene_expression/TTN_by_pathology.svg)
UBE2A.md
... ...
@@ -36,3 +36,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
36 36
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/UBE2A.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/UBE2A_hg38.html)
37 37
38 38
![image](images/proteinpaint/UBE2A.svg)
39
+## UBE2A Expression
40
+![image](images/gene_expression/UBE2A_by_pathology.svg)
UBE2J1.md
... ...
@@ -37,3 +37,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
37 37
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/UBE2J1.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/UBE2J1_hg38.html)
38 38
39 39
![image](images/proteinpaint/UBE2J1.svg)
40
+## UBE2J1 Expression
41
+![image](images/gene_expression/UBE2J1_by_pathology.svg)
UBR5.md
... ...
@@ -37,3 +37,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
37 37
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/UBR5.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/UBR5_hg38.html)
38 38
39 39
![image](images/proteinpaint/UBR5.svg)
40
+## UBR5 Expression
41
+![image](images/gene_expression/UBR5_by_pathology.svg)
UNC5B.md
... ...
@@ -35,3 +35,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
35 35
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/UNC5B.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/UNC5B_hg38.html)
36 36
37 37
![image](images/proteinpaint/UNC5B.svg)
38
+## UNC5B Expression
39
+![image](images/gene_expression/UNC5B_by_pathology.svg)
UNC5C.md
... ...
@@ -32,3 +32,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
32 32
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/UNC5C.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/UNC5C_hg38.html)
33 33
34 34
![image](images/proteinpaint/UNC5C.svg)
35
+## UNC5C Expression
36
+![image](images/gene_expression/UNC5C_by_pathology.svg)
UNC5D.md
... ...
@@ -32,3 +32,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
32 32
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/UNC5D.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/UNC5D_hg38.html)
33 33
34 34
![image](images/proteinpaint/UNC5D.svg)
35
+## UNC5D Expression
36
+![image](images/gene_expression/UNC5D_by_pathology.svg)
USP7.md
... ...
@@ -36,3 +36,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
36 36
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/USP7.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/USP7_hg38.html)
37 37
38 38
![image](images/proteinpaint/USP7.svg)
39
+## USP7 Expression
40
+![image](images/gene_expression/USP7_by_pathology.svg)
VMA21.md
... ...
@@ -32,3 +32,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
32 32
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/VMA21.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/VMA21_hg38.html)
33 33
34 34
![image](images/proteinpaint/VMA21.svg)
35
+## VMA21 Expression
36
+![image](images/gene_expression/VMA21_by_pathology.svg)
VPS13B.md
... ...
@@ -39,3 +39,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
39 39
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/VPS13B.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/VPS13B_hg38.html)
40 40
41 41
![image](images/proteinpaint/VPS13B.svg)
42
+## VPS13B Expression
43
+![image](images/gene_expression/VPS13B_by_pathology.svg)
VWA7.md
... ...
@@ -34,3 +34,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
34 34
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/VWA7.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/VWA7_hg38.html)
35 35
36 36
![image](images/proteinpaint/VWA7.svg)
37
+## VWA7 Expression
38
+![image](images/gene_expression/VWA7_by_pathology.svg)
WAC.md
... ...
@@ -35,3 +35,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
35 35
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/WAC.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/WAC_hg38.html)
36 36
37 37
![image](images/proteinpaint/WAC.svg)
38
+## WAC Expression
39
+![image](images/gene_expression/WAC_by_pathology.svg)
WDFY3.md
... ...
@@ -35,3 +35,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
35 35
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/WDFY3.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/WDFY3_hg38.html)
36 36
37 37
![image](images/proteinpaint/WDFY3.svg)
38
+## WDFY3 Expression
39
+![image](images/gene_expression/WDFY3_by_pathology.svg)
WDR7.md
... ...
@@ -34,3 +34,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
34 34
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/WDR7.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/WDR7_hg38.html)
35 35
36 36
![image](images/proteinpaint/WDR7.svg)
37
+## WDR7 Expression
38
+![image](images/gene_expression/WDR7_by_pathology.svg)
WDR90.md
... ...
@@ -34,3 +34,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
34 34
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/WDR90.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/WDR90_hg38.html)
35 35
36 36
![image](images/proteinpaint/WDR90.svg)
37
+## WDR90 Expression
38
+![image](images/gene_expression/WDR90_by_pathology.svg)
WEE1.md
... ...
@@ -49,3 +49,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
49 49
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/WEE1.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/WEE1_hg38.html)
50 50
51 51
![image](images/proteinpaint/WEE1.svg)
52
+## WEE1 Expression
53
+![image](images/gene_expression/WEE1_by_pathology.svg)
WHAMM.md
... ...
@@ -34,3 +34,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
34 34
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/WHAMM.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/WHAMM_hg38.html)
35 35
36 36
![image](images/proteinpaint/WHAMM.svg)
37
+## WHAMM Expression
38
+![image](images/gene_expression/WHAMM_by_pathology.svg)
WNK1.md
... ...
@@ -45,3 +45,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
45 45
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/WNK1.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/WNK1_hg38.html)
46 46
47 47
![image](images/proteinpaint/WNK1.svg)
48
+## WNK1 Expression
49
+![image](images/gene_expression/WNK1_by_pathology.svg)
WNK2.md
... ...
@@ -40,3 +40,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
40 40
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/WNK2.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/WNK2_hg38.html)
41 41
42 42
![image](images/proteinpaint/WNK2.svg)
43
+## WNK2 Expression
44
+![image](images/gene_expression/WNK2_by_pathology.svg)
XBP1.md
... ...
@@ -37,3 +37,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
37 37
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/XBP1.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/XBP1_hg38.html)
38 38
39 39
![image](images/proteinpaint/XBP1.svg)
40
+## XBP1 Expression
41
+![image](images/gene_expression/XBP1_by_pathology.svg)
XIRP2.md
... ...
@@ -38,3 +38,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
38 38
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/XIRP2.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/XIRP2_hg38.html)
39 39
40 40
![image](images/proteinpaint/XIRP2.svg)
41
+## XIRP2 Expression
42
+![image](images/gene_expression/XIRP2_by_pathology.svg)
XPO1.md
... ...
@@ -42,3 +42,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
42 42
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/XPO1.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/XPO1_hg38.html)
43 43
44 44
![image](images/proteinpaint/XPO1.svg)
45
+## XPO1 Expression
46
+![image](images/gene_expression/XPO1_by_pathology.svg)
YY1.md
... ...
@@ -37,3 +37,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
37 37
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/YY1.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/YY1_hg38.html)
38 38
39 39
![image](images/proteinpaint/YY1.svg)
40
+## YY1 Expression
41
+![image](images/gene_expression/YY1_by_pathology.svg)
YY1AP1.md
... ...
@@ -34,3 +34,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
34 34
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/YY1AP1.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/YY1AP1_hg38.html)
35 35
36 36
![image](images/proteinpaint/YY1AP1.svg)
37
+## YY1AP1 Expression
38
+![image](images/gene_expression/YY1AP1_by_pathology.svg)
ZAN.md
... ...
@@ -30,3 +30,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
30 30
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/ZAN.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/ZAN_hg38.html)
31 31
32 32
![image](images/proteinpaint/ZAN.svg)
33
+## ZAN Expression
34
+![image](images/gene_expression/ZAN_by_pathology.svg)
ZBTB7A.md
... ...
@@ -39,3 +39,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
39 39
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/ZBTB7A.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/ZBTB7A_hg38.html)
40 40
41 41
![image](images/proteinpaint/ZBTB7A.svg)
42
+## ZBTB7A Expression
43
+![image](images/gene_expression/ZBTB7A_by_pathology.svg)
ZC3H12A.md
... ...
@@ -34,3 +34,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
34 34
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/ZC3H12A.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/ZC3H12A_hg38.html)
35 35
36 36
![image](images/proteinpaint/ZC3H12A.svg)
37
+## ZC3H12A Expression
38
+![image](images/gene_expression/ZC3H12A_by_pathology.svg)
ZCCHC7.md
... ...
@@ -43,3 +43,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
43 43
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/ZCCHC7.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/ZCCHC7_hg38.html)
44 44
45 45
![image](images/proteinpaint/ZCCHC7.svg)
46
+## ZCCHC7 Expression
47
+![image](images/gene_expression/ZCCHC7_by_pathology.svg)
ZEB2.md
... ...
@@ -35,3 +35,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
35 35
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/ZEB2.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/ZEB2_hg38.html)
36 36
37 37
![image](images/proteinpaint/ZEB2.svg)
38
+## ZEB2 Expression
39
+![image](images/gene_expression/ZEB2_by_pathology.svg)
ZFAT.md
... ...
@@ -35,3 +35,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
35 35
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/ZFAT.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/ZFAT_hg38.html)
36 36
37 37
![image](images/proteinpaint/ZFAT.svg)
38
+## ZFAT Expression
39
+![image](images/gene_expression/ZFAT_by_pathology.svg)
ZFP36L1.md
... ...
@@ -43,3 +43,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
43 43
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/ZFP36L1.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/ZFP36L1_hg38.html)
44 44
45 45
![image](images/proteinpaint/ZFP36L1.svg)
46
+## ZFP36L1 Expression
47
+![image](images/gene_expression/ZFP36L1_by_pathology.svg)
ZFX.md
... ...
@@ -38,3 +38,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
38 38
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/ZFX.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/ZFX_hg38.html)
39 39
40 40
![image](images/proteinpaint/ZFX.svg)
41
+## ZFX Expression
42
+![image](images/gene_expression/ZFX_by_pathology.svg)
ZNF117.md
... ...
@@ -32,3 +32,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
32 32
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/ZNF117.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/ZNF117_hg38.html)
33 33
34 34
![image](images/proteinpaint/ZNF117.svg)
35
+## ZNF117 Expression
36
+![image](images/gene_expression/ZNF117_by_pathology.svg)
ZNF217.md
... ...
@@ -35,3 +35,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
35 35
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/ZNF217.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/ZNF217_hg38.html)
36 36
37 37
![image](images/proteinpaint/ZNF217.svg)
38
+## ZNF217 Expression
39
+![image](images/gene_expression/ZNF217_by_pathology.svg)
ZNF229.md
... ...
@@ -34,3 +34,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
34 34
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/ZNF229.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/ZNF229_hg38.html)
35 35
36 36
![image](images/proteinpaint/ZNF229.svg)
37
+## ZNF229 Expression
38
+![image](images/gene_expression/ZNF229_by_pathology.svg)
ZNF292.md
... ...
@@ -35,3 +35,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
35 35
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/ZNF292.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/ZNF292_hg38.html)
36 36
37 37
![image](images/proteinpaint/ZNF292.svg)
38
+## ZNF292 Expression
39
+![image](images/gene_expression/ZNF292_by_pathology.svg)
ZNF296.md
... ...
@@ -32,3 +32,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
32 32
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/ZNF296.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/ZNF296_hg38.html)
33 33
34 34
![image](images/proteinpaint/ZNF296.svg)
35
+## ZNF296 Expression
36
+![image](images/gene_expression/ZNF296_by_pathology.svg)
ZNF423.md
... ...
@@ -35,3 +35,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
35 35
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/ZNF423.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/ZNF423_hg38.html)
36 36
37 37
![image](images/proteinpaint/ZNF423.svg)
38
+## ZNF423 Expression
39
+![image](images/gene_expression/ZNF423_by_pathology.svg)
ZNF608.md
... ...
@@ -35,3 +35,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
35 35
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/ZNF608.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/ZNF608_hg38.html)
36 36
37 37
![image](images/proteinpaint/ZNF608.svg)
38
+## ZNF608 Expression
39
+![image](images/gene_expression/ZNF608_by_pathology.svg)
ZNF85.md
... ...
@@ -34,3 +34,5 @@ View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAM
34 34
View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/ZNF85.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/ZNF85_hg38.html)
35 35
36 36
![image](images/proteinpaint/ZNF85.svg)
37
+## ZNF85 Expression
38
+![image](images/gene_expression/ZNF85_by_pathology.svg)