4d30e5aabc7500f7ae9c3b70128eae7be1c1f0f9
FL_genes.md
| ... | ... | @@ -14,55 +14,55 @@ link-citations: true |
| 14 | 14 | ### *49 total* |
| 15 | 15 | |
| 16 | 16 | |Gene|Summary| First FL study | Other entities | QC result | |
| 17 | -|:-:|:-:|:-:|:-|:-| |
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| 18 | -|[ARID1A](ARID1A)|Tier 1 GE[@krysiakRecurrentSomaticMutations2017b], FE[@barisicARID1AOrchestratesSWI2024] (aSHM)|[Krysiak et al](papers/krysiakRecurrentSomaticMutations2017b)|[@loveGeneticLandscapeMutations2012; @rossiCodingGenomeSplenic2012c; @wienandGenomicAnalysesFlowsorted2019b; @zhangGeneticHeterogeneityDiffuse2013]|| |
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| 17 | +|:-:|:--:|:-:|:-|:-| |
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| 18 | +|[ARID1A](ARID1A)|Tier 1 GE[@krysiakRecurrentSomaticMutations2017b], FE[@barisicARID1AOrchestratesSWI2024], aSHM|[Krysiak et al](papers/krysiakRecurrentSomaticMutations2017b)|[@loveGeneticLandscapeMutations2012; @rossiCodingGenomeSplenic2012c; @wienandGenomicAnalysesFlowsorted2019b; @zhangGeneticHeterogeneityDiffuse2013]|| |
|
| 19 | 19 | |[ATP6AP1](ATP6AP1)|Tier 1 GE[@okosunRecurrentMTORC1activatingRRAGC2016a]|[Okosun et al](papers/okosunRecurrentMTORC1activatingRRAGC2016a)||| |
| 20 | 20 | |[ATP6V1B2](ATP6V1B2)|Tier 1 GE[@okosunRecurrentMTORC1activatingRRAGC2016a]|[Okosun et al](papers/okosunRecurrentMTORC1activatingRRAGC2016a)||| |
| 21 | -|[B2M](B2M)|Tier 1 GE[@morinFrequentMutationHistonemodifying2011], FE[@challa-malladiCombinedGeneticInactivationa] (aSHM)|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)|[@pararajalingamCodingNoncodingDrivers2020; @reichelFlowSortingExome2015a]|| |
|
| 22 | -|[BCL2](BCL2)|Tier 1 GE[@morinFrequentMutationHistonemodifying2011], FE[@balSuperenhancerHypermutationAlters2022] (aSHM)|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)|[@burkhardtClinicalRelevanceMolecular2022b; @sarkozyMutationalLandscapeGray2021a; @tanakaFrequentIncidenceSomatic1992]|| |
|
| 23 | -|[BCL7A](BCL7A)|Tier 1 GE[@krysiakRecurrentSomaticMutations2017b], FE[@balinas-gaviraFrequentMutationsAminoterminal2020b] (aSHM)|[Krysiak et al](papers/krysiakRecurrentSomaticMutations2017b)|[@grandeGenomewideDiscoverySomatic2019; @morinFrequentMutationHistonemodifying2011; @reichelFlowSortingExome2015a]|| |
|
| 24 | -|[BTK](BTK)|Tier 1 GE[@krysiakRecurrentSomaticMutations2017b] (aSHM)|[Krysiak et al](papers/krysiakRecurrentSomaticMutations2017b)|[@albuquerqueEnhancingKnowledgeDiscovery2017a]|| |
|
| 25 | -|[CARD11](CARD11)|Tier 1 GE[@morinFrequentMutationHistonemodifying2011], FE[@lenzOncogenicCARD11Mutations2008], CE[@zhaoExpressionPrognosticValue2016] (aSHM)|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)|[@lenzOncogenicCARD11Mutations2008; @wuGeneticHeterogeneityPrimary2016; @yanBCRTLRSignaling2012a]|| |
|
| 26 | -|[CCND3](CCND3)|Tier 1 GE[@morinFrequentMutationHistonemodifying2011], FE[@schmitzBurkittLymphomaPathogenesis2012] (aSHM)|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)|[@deschGenotypingCirculatingTumor2020; @jalladesExomeSequencingIdentifies2017; @richterRecurrentMutationID32012a]|| |
|
| 27 | -|[CD83](CD83)|Tier 1 GE[@russler-germainMutationsAssociatedProgression2023b] (aSHM)|[Russler et al](papers/russler-germainMutationsAssociatedProgression2023b)|[@dunsCharacterizationDLBCLPMBL2021b; @morinMutationalStructuralAnalysis2013; @paneaWholeGenomeLandscape2019]|| |
|
| 28 | -|[CREBBP](CREBBP)|Tier 1 GE[@pasqualucciInactivatingMutationsAcetyltransferase2011a], FE[@pasqualucciInactivatingMutationsAcetyltransferase2011a] (aSHM)|[Pasqualucci et al](papers/pasqualucciInactivatingMutationsAcetyltransferase2011a)|[@dunsCharacterizationDLBCLPMBL2021b; @loveGeneticLandscapeMutations2012; @parryWholeExomeSequencing2013]|| |
|
| 21 | +|[B2M](B2M)|Tier 1 GE[@morinFrequentMutationHistonemodifying2011], FE[@challa-malladiCombinedGeneticInactivationa], aSHM|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)|[@pararajalingamCodingNoncodingDrivers2020; @reichelFlowSortingExome2015a]|| |
|
| 22 | +|[BCL2](BCL2)|Tier 1 GE[@morinFrequentMutationHistonemodifying2011], FE[@balSuperenhancerHypermutationAlters2022], aSHM|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)|[@burkhardtClinicalRelevanceMolecular2022b; @sarkozyMutationalLandscapeGray2021a; @tanakaFrequentIncidenceSomatic1992]|| |
|
| 23 | +|[BCL7A](BCL7A)|Tier 1 GE[@krysiakRecurrentSomaticMutations2017b], FE[@balinas-gaviraFrequentMutationsAminoterminal2020b], aSHM|[Krysiak et al](papers/krysiakRecurrentSomaticMutations2017b)|[@grandeGenomewideDiscoverySomatic2019; @morinFrequentMutationHistonemodifying2011; @reichelFlowSortingExome2015a]|| |
|
| 24 | +|[BTK](BTK)|Tier 1 GE[@krysiakRecurrentSomaticMutations2017b], aSHM|[Krysiak et al](papers/krysiakRecurrentSomaticMutations2017b)|[@albuquerqueEnhancingKnowledgeDiscovery2017a]|| |
|
| 25 | +|[CARD11](CARD11)|Tier 1 GE[@morinFrequentMutationHistonemodifying2011], FE[@lenzOncogenicCARD11Mutations2008], CE[@zhaoExpressionPrognosticValue2016], aSHM|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)|[@lenzOncogenicCARD11Mutations2008; @wuGeneticHeterogeneityPrimary2016; @yanBCRTLRSignaling2012a]|| |
|
| 26 | +|[CCND3](CCND3)|Tier 1 GE[@morinFrequentMutationHistonemodifying2011], FE[@schmitzBurkittLymphomaPathogenesis2012], aSHM|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)|[@deschGenotypingCirculatingTumor2020; @jalladesExomeSequencingIdentifies2017; @richterRecurrentMutationID32012a]|| |
|
| 27 | +|[CD83](CD83)|Tier 1 GE[@russler-germainMutationsAssociatedProgression2023b], aSHM|[Russler et al](papers/russler-germainMutationsAssociatedProgression2023b)|[@dunsCharacterizationDLBCLPMBL2021b; @morinMutationalStructuralAnalysis2013; @paneaWholeGenomeLandscape2019]|| |
|
| 28 | +|[CREBBP](CREBBP)|Tier 1 GE[@pasqualucciInactivatingMutationsAcetyltransferase2011a], FE[@pasqualucciInactivatingMutationsAcetyltransferase2011a], aSHM|[Pasqualucci et al](papers/pasqualucciInactivatingMutationsAcetyltransferase2011a)|[@dunsCharacterizationDLBCLPMBL2021b; @loveGeneticLandscapeMutations2012; @parryWholeExomeSequencing2013]|| |
|
| 29 | 29 | |[CTSS](CTSS)|Tier 1 GE[@barariaCathepsinAlterationsInduce2020c]|[Bararia et al](papers/barariaCathepsinAlterationsInduce2020c)||| |
| 30 | -|[EEF1A1](EEF1A1)|Tier 1 GE[@hubschmannMutationalMechanismsShaping2021b], CE[@gongExpressionClinicalValue2021] (aSHM)|[Hubschmann et al](papers/hubschmannMutationalMechanismsShaping2021b)|[@reichelFlowSortingExome2015a]|| |
|
| 31 | -|[EP300](EP300)|Tier 1 GE[@pasqualucciInactivatingMutationsAcetyltransferase2011a], FE[@pasqualucciInactivatingMutationsAcetyltransferase2011a] (aSHM)|[Pasqualucci et al](papers/pasqualucciInactivatingMutationsAcetyltransferase2011a)|[@rossiCodingGenomeSplenic2012c]|| |
|
| 32 | -|[EZH2](EZH2)|Tier 1 GE[@morinSomaticMutationsAltering2010a], FE[@yapSomaticMutationsEZH22011b] (aSHM)|[Morin et al](papers/morinSomaticMutationsAltering2010a)|[@loveGeneticLandscapeMutations2012; @mottokIntegrativeGenomicAnalysis2019b]|| |
|
| 33 | -|[FOXO1](FOXO1)|Tier 1 GE[@morinFrequentMutationHistonemodifying2011], FE[@trinhAnalysisFOXO1Mutations], CE[@trinhAnalysisFOXO1Mutations] (aSHM)|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)|[@dunsCharacterizationDLBCLPMBL2021b; @schmitzBurkittLymphomaPathogenesis2012]|| |
|
| 34 | -|[GNA13](GNA13)|Tier 1 GE[@morinFrequentMutationHistonemodifying2011], FE[@muppidiLossSignalingGa132014b] (aSHM)|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)|[@loveGeneticLandscapeMutations2012; @reichelFlowSortingExome2015a]|| |
|
| 35 | -|[HIST1H1B](HIST1H1B)|Tier 1 GE[@krysiakRecurrentSomaticMutations2017b] (aSHM)|[Krysiak et al](papers/krysiakRecurrentSomaticMutations2017b)|[@chapuyMolecularSubtypesDiffuse2018b; @sarkozyMutationalLandscapeGray2021a]|| |
|
| 36 | -|[HIST1H1C](HIST1H1C)|Tier 1 GE[@morinFrequentMutationHistonemodifying2011] (aSHM)|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)|[@paneaWholeGenomeLandscape2019]|| |
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| 37 | -|[HIST1H1D](HIST1H1D)|Tier 1 GE[@krysiakRecurrentSomaticMutations2017b] (aSHM)|[Krysiak et al](papers/krysiakRecurrentSomaticMutations2017b)|[@jalladesExomeSequencingIdentifies2017; @morinMutationalStructuralAnalysis2013]|| |
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| 38 | -|[HIST1H1E](HIST1H1E)|Tier 1 GE[@krysiakRecurrentSomaticMutations2017b] (aSHM)|[Krysiak et al](papers/krysiakRecurrentSomaticMutations2017b)|[@grandeGenomewideDiscoverySomatic2019; @lohrDiscoveryPrioritizationSomatic2012a; @reichelFlowSortingExome2015a]|| |
|
| 39 | -|[HIST1H2AC](HIST1H2AC)|Tier 1 GE[@krysiakRecurrentSomaticMutations2017b] (aSHM)|[Krysiak et al](papers/krysiakRecurrentSomaticMutations2017b)|[@morinMutationalStructuralAnalysis2013]|| |
|
| 40 | -|[HIST1H2AG](HIST1H2AG)|Tier 1 GE[@krysiakRecurrentSomaticMutations2017b] (aSHM)|[Krysiak et al](papers/krysiakRecurrentSomaticMutations2017b)|[@morinMutationalStructuralAnalysis2013; @paneaWholeGenomeLandscape2019; @rossiCodingGenomeSplenic2012c]|| |
|
| 41 | -|[HIST1H2AM](HIST1H2AM)|Tier 1 GE[@krysiakRecurrentSomaticMutations2017b] (aSHM)|[Krysiak et al](papers/krysiakRecurrentSomaticMutations2017b)|[@chapuyMolecularSubtypesDiffuse2018b; @paneaWholeGenomeLandscape2019]|| |
|
| 42 | -|[HIST1H2BC](HIST1H2BC)|Tier 1 GE[@krysiakRecurrentSomaticMutations2017b] (aSHM)|[Krysiak et al](papers/krysiakRecurrentSomaticMutations2017b)|[@lohrDiscoveryPrioritizationSomatic2012a; @mottokIntegrativeGenomicAnalysis2019b]|| |
|
| 30 | +|[EEF1A1](EEF1A1)|Tier 1 GE[@hubschmannMutationalMechanismsShaping2021b], CE[@gongExpressionClinicalValue2021], aSHM|[Hubschmann et al](papers/hubschmannMutationalMechanismsShaping2021b)|[@reichelFlowSortingExome2015a]|| |
|
| 31 | +|[EP300](EP300)|Tier 1 GE[@pasqualucciInactivatingMutationsAcetyltransferase2011a], FE[@pasqualucciInactivatingMutationsAcetyltransferase2011a], aSHM|[Pasqualucci et al](papers/pasqualucciInactivatingMutationsAcetyltransferase2011a)|[@rossiCodingGenomeSplenic2012c]|| |
|
| 32 | +|[EZH2](EZH2)|Tier 1 GE[@morinSomaticMutationsAltering2010a], FE[@yapSomaticMutationsEZH22011b], aSHM|[Morin et al](papers/morinSomaticMutationsAltering2010a)|[@loveGeneticLandscapeMutations2012; @mottokIntegrativeGenomicAnalysis2019b]|| |
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| 33 | +|[FOXO1](FOXO1)|Tier 1 GE[@morinFrequentMutationHistonemodifying2011], FE[@trinhAnalysisFOXO1Mutations], CE[@trinhAnalysisFOXO1Mutations], aSHM|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)|[@dunsCharacterizationDLBCLPMBL2021b; @schmitzBurkittLymphomaPathogenesis2012]|| |
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| 34 | +|[GNA13](GNA13)|Tier 1 GE[@morinFrequentMutationHistonemodifying2011], FE[@muppidiLossSignalingGa132014b], aSHM|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)|[@loveGeneticLandscapeMutations2012; @reichelFlowSortingExome2015a]|| |
|
| 35 | +|[HIST1H1B](HIST1H1B)|Tier 1 GE[@krysiakRecurrentSomaticMutations2017b], aSHM|[Krysiak et al](papers/krysiakRecurrentSomaticMutations2017b)|[@chapuyMolecularSubtypesDiffuse2018b; @sarkozyMutationalLandscapeGray2021a]|| |
|
| 36 | +|[HIST1H1C](HIST1H1C)|Tier 1 GE[@morinFrequentMutationHistonemodifying2011], aSHM|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)|[@paneaWholeGenomeLandscape2019]|| |
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| 37 | +|[HIST1H1D](HIST1H1D)|Tier 1 GE[@krysiakRecurrentSomaticMutations2017b], aSHM|[Krysiak et al](papers/krysiakRecurrentSomaticMutations2017b)|[@jalladesExomeSequencingIdentifies2017; @morinMutationalStructuralAnalysis2013]|| |
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| 38 | +|[HIST1H1E](HIST1H1E)|Tier 1 GE[@krysiakRecurrentSomaticMutations2017b], aSHM|[Krysiak et al](papers/krysiakRecurrentSomaticMutations2017b)|[@grandeGenomewideDiscoverySomatic2019; @lohrDiscoveryPrioritizationSomatic2012a; @reichelFlowSortingExome2015a]|| |
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| 39 | +|[HIST1H2AC](HIST1H2AC)|Tier 1 GE[@krysiakRecurrentSomaticMutations2017b], aSHM|[Krysiak et al](papers/krysiakRecurrentSomaticMutations2017b)|[@morinMutationalStructuralAnalysis2013]|| |
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| 40 | +|[HIST1H2AG](HIST1H2AG)|Tier 1 GE[@krysiakRecurrentSomaticMutations2017b], aSHM|[Krysiak et al](papers/krysiakRecurrentSomaticMutations2017b)|[@morinMutationalStructuralAnalysis2013; @paneaWholeGenomeLandscape2019; @rossiCodingGenomeSplenic2012c]|| |
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| 41 | +|[HIST1H2AM](HIST1H2AM)|Tier 1 GE[@krysiakRecurrentSomaticMutations2017b], aSHM|[Krysiak et al](papers/krysiakRecurrentSomaticMutations2017b)|[@chapuyMolecularSubtypesDiffuse2018b; @paneaWholeGenomeLandscape2019]|| |
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| 42 | +|[HIST1H2BC](HIST1H2BC)|Tier 1 GE[@krysiakRecurrentSomaticMutations2017b], aSHM|[Krysiak et al](papers/krysiakRecurrentSomaticMutations2017b)|[@lohrDiscoveryPrioritizationSomatic2012a; @mottokIntegrativeGenomicAnalysis2019b]|| |
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| 43 | 43 | |[HIST1H2BD](HIST1H2BD)|Tier 1 GE[@krysiakRecurrentSomaticMutations2017b]|[Krysiak et al](papers/krysiakRecurrentSomaticMutations2017b)||| |
| 44 | 44 | |[HIST1H2BG](HIST1H2BG)|Tier 1 GE[@krysiakRecurrentSomaticMutations2017b]|[Krysiak et al](papers/krysiakRecurrentSomaticMutations2017b)||| |
| 45 | -|[HIST1H3B](HIST1H3B)|Tier 1 GE (aSHM)||[@lohrDiscoveryPrioritizationSomatic2012a; @reichelFlowSortingExome2015a]|| |
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| 45 | +|[HIST1H3B](HIST1H3B)|Tier 1 GE, aSHM||[@lohrDiscoveryPrioritizationSomatic2012a; @reichelFlowSortingExome2015a]|| |
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| 46 | 46 | |[HIST1H3G](HIST1H3G)|Tier 1 GE[@krysiakRecurrentSomaticMutations2017b]|[Krysiak et al](papers/krysiakRecurrentSomaticMutations2017b)||| |
| 47 | -|[HVCN1](HVCN1)|Tier 1 GE[@krysiakRecurrentSomaticMutations2017b] (aSHM)|[Krysiak et al](papers/krysiakRecurrentSomaticMutations2017b)|[@chapuyMolecularSubtypesDiffuse2018b]|| |
|
| 48 | -|[IRF4](IRF4)|Tier 1 GE[@drevalGeneticSubdivisionsFollicular2023] (aSHM)|[Dreval et al](papers/drevalGeneticSubdivisionsFollicular2023)|[@morinFrequentMutationHistonemodifying2011; @mottokIntegrativeGenomicAnalysis2019b]|| |
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| 49 | -|[IRF8](IRF8)|Tier 1 GE[@morinFrequentMutationHistonemodifying2011], FE[@qiuIRF8mutantCellLymphoma2024] (aSHM)|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)|[@mottokIntegrativeGenomicAnalysis2019b; @paneaWholeGenomeLandscape2019]|| |
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| 50 | -|[KLHL6](KLHL6)|Tier 1 GE[@morinFrequentMutationHistonemodifying2011], FE[@merirantaDisruptionKLHL6Fuels2024] (aSHM)|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)|[@ganapathiGeneticLandscapeDural2016]|| |
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| 51 | -|[KMT2D](KMT2D)|Tier 1 GE[@morinFrequentMutationHistonemodifying2011], FE[@liLossCREBBPKMT2D2024], CE[@rushtonGeneticEvolutionaryPatterns2020] (aSHM)|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)|[@beaLandscapeSomaticMutations2013; @deschGenotypingCirculatingTumor2020; @grandeGenomewideDiscoverySomatic2019; @rossiCodingGenomeSplenic2012c]|| |
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| 52 | -|[MAP2K1](MAP2K1)|Tier 1 GE[@louissaintPediatrictypeNodalFollicular2016a] (aSHM)|[Louissaint et al](papers/louissaintPediatrictypeNodalFollicular2016a)|[@shinBRAFV600EMAP2K12015]|| |
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| 53 | -|[MEF2B](MEF2B)|Tier 1 GE[@morinFrequentMutationHistonemodifying2011], FE[@yingMEF2BMutationsLead] (aSHM)|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)|[@beaLandscapeSomaticMutations2013]|| |
|
| 54 | -|[PIM1](PIM1)|Tier 1 GE[@drevalGeneticSubdivisionsFollicular2023], CE[@guoSGK1MutationStatus2022b] (aSHM)|[Dreval et al](papers/drevalGeneticSubdivisionsFollicular2023)|[@burkhardtClinicalRelevanceMolecular2022b; @dunsCharacterizationDLBCLPMBL2021b; @pasqualucciHypermutationMultipleProtooncogenes2001a]|| |
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| 55 | -|[POU2AF1](POU2AF1)|Tier 1 GE[@krysiakRecurrentSomaticMutations2017b] (aSHM)|[Krysiak et al](papers/krysiakRecurrentSomaticMutations2017b)|[@chapuyMolecularSubtypesDiffuse2018b]|| |
|
| 56 | -|[POU2F2](POU2F2)|Tier 1 GE[@krysiakRecurrentSomaticMutations2017b], FE[@hodsonRegulationNormalBcell2016a] (aSHM)|[Krysiak et al](papers/krysiakRecurrentSomaticMutations2017b)|[@lohrDiscoveryPrioritizationSomatic2012a]|| |
|
| 57 | -|[RRAGC](RRAGC)|Tier 1 GE[@okosunRecurrentMTORC1activatingRRAGC2016a], FE[@ortega-molinaOncogenicRagGTPase2019b] (aSHM)|[Okosun et al](papers/okosunRecurrentMTORC1activatingRRAGC2016a)||| |
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| 58 | -|[SGK1](SGK1)|Tier 1 GE[@morinFrequentMutationHistonemodifying2011], FE[@hartmannHighlyRecurrentMutations2016b], CE[@guoSGK1MutationStatus2022b] (aSHM)|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)|[@dunsCharacterizationDLBCLPMBL2021b]|| |
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| 59 | -|[SMARCA4](SMARCA4)|Tier 1 GE[@krysiakRecurrentSomaticMutations2017b], FE[@dengSMARCA4HaploinsufficientCell2024] (aSHM)|[Krysiak et al](papers/krysiakRecurrentSomaticMutations2017b)|[@nadeuGenomicEpigenomicInsights2020b; @reddyGeneticFunctionalDrivers2017; @richterRecurrentMutationID32012a]|| |
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| 60 | -|[STAT6](STAT6)|Tier 1 GE[@yildizActivatingSTAT6Mutations2015c], FE[@yildizActivatingSTAT6Mutations2015c] (aSHM)|[Yildiz et al](papers/yildizActivatingSTAT6Mutations2015c)|[@ritzRecurrentMutationsSTAT62009a]|| |
|
| 61 | -|[TBL1XR1](TBL1XR1)|Tier 1 GE, FE[@venturuttiTBL1XR1MutationsDrive2020b] (aSHM)||[@lohrDiscoveryPrioritizationSomatic2012a; @rossiCodingGenomeSplenic2012c]|| |
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| 62 | -|[TMSB4X](TMSB4X)|Tier 1 GE (aSHM)||[@zhangGeneticHeterogeneityDiffuse2013]|| |
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| 63 | -|[TNFAIP3](TNFAIP3)|Tier 1 GE, FE[@compagnoMutationsMultipleGenes2009a] (aSHM)||[@compagnoMutationsMultipleGenes2009a; @rossiAlterationBIRC3Multiple2011a; @schmitzTNFAIP3A20Tumor2009a]|| |
|
| 64 | -|[TNFRSF14](TNFRSF14)|Tier 1 GE[@cheungAcquiredTNFRSF14Mutations2010a], CE[@guoSGK1MutationStatus2022b] (aSHM)|[Cheung et al](papers/cheungAcquiredTNFRSF14Mutations2010a)|[@morinFrequentMutationHistonemodifying2011; @spinaGeneticsNodalMarginal2016b]|| |
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| 65 | -|[TP53](TP53)|Tier 1 GE[@morinFrequentMutationHistonemodifying2011], FE[@rowhTp53DeletionLineage2011] (aSHM)|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)|[@beaLandscapeSomaticMutations2013; @lohrDiscoveryPrioritizationSomatic2012a; @rossiCodingGenomeSplenic2012c; @tiacciPervasiveMutationsJAKSTAT2018b; @wildaInactivationARFMDM2p53Pathway2004]|| |
|
| 47 | +|[HVCN1](HVCN1)|Tier 1 GE[@krysiakRecurrentSomaticMutations2017b], aSHM|[Krysiak et al](papers/krysiakRecurrentSomaticMutations2017b)|[@chapuyMolecularSubtypesDiffuse2018b]|| |
|
| 48 | +|[IRF4](IRF4)|Tier 1 GE[@drevalGeneticSubdivisionsFollicular2023], aSHM|[Dreval et al](papers/drevalGeneticSubdivisionsFollicular2023)|[@morinFrequentMutationHistonemodifying2011; @mottokIntegrativeGenomicAnalysis2019b]|| |
|
| 49 | +|[IRF8](IRF8)|Tier 1 GE[@morinFrequentMutationHistonemodifying2011], FE[@qiuIRF8mutantCellLymphoma2024], aSHM|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)|[@mottokIntegrativeGenomicAnalysis2019b; @paneaWholeGenomeLandscape2019]|| |
|
| 50 | +|[KLHL6](KLHL6)|Tier 1 GE[@morinFrequentMutationHistonemodifying2011], FE[@merirantaDisruptionKLHL6Fuels2024], aSHM|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)|[@ganapathiGeneticLandscapeDural2016]|| |
|
| 51 | +|[KMT2D](KMT2D)|Tier 1 GE[@morinFrequentMutationHistonemodifying2011], FE[@liLossCREBBPKMT2D2024], CE[@rushtonGeneticEvolutionaryPatterns2020], aSHM|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)|[@beaLandscapeSomaticMutations2013; @deschGenotypingCirculatingTumor2020; @grandeGenomewideDiscoverySomatic2019; @rossiCodingGenomeSplenic2012c]|| |
|
| 52 | +|[MAP2K1](MAP2K1)|Tier 1 GE[@louissaintPediatrictypeNodalFollicular2016a], aSHM|[Louissaint et al](papers/louissaintPediatrictypeNodalFollicular2016a)|[@shinBRAFV600EMAP2K12015]|| |
|
| 53 | +|[MEF2B](MEF2B)|Tier 1 GE[@morinFrequentMutationHistonemodifying2011], FE[@yingMEF2BMutationsLead], aSHM|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)|[@beaLandscapeSomaticMutations2013]|| |
|
| 54 | +|[PIM1](PIM1)|Tier 1 GE[@drevalGeneticSubdivisionsFollicular2023], CE[@guoSGK1MutationStatus2022b], aSHM|[Dreval et al](papers/drevalGeneticSubdivisionsFollicular2023)|[@burkhardtClinicalRelevanceMolecular2022b; @dunsCharacterizationDLBCLPMBL2021b; @pasqualucciHypermutationMultipleProtooncogenes2001a]|| |
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| 55 | +|[POU2AF1](POU2AF1)|Tier 1 GE[@krysiakRecurrentSomaticMutations2017b], aSHM|[Krysiak et al](papers/krysiakRecurrentSomaticMutations2017b)|[@chapuyMolecularSubtypesDiffuse2018b]|| |
|
| 56 | +|[POU2F2](POU2F2)|Tier 1 GE[@krysiakRecurrentSomaticMutations2017b], FE[@hodsonRegulationNormalBcell2016a], aSHM|[Krysiak et al](papers/krysiakRecurrentSomaticMutations2017b)|[@lohrDiscoveryPrioritizationSomatic2012a]|| |
|
| 57 | +|[RRAGC](RRAGC)|Tier 1 GE[@okosunRecurrentMTORC1activatingRRAGC2016a], FE[@ortega-molinaOncogenicRagGTPase2019b], aSHM|[Okosun et al](papers/okosunRecurrentMTORC1activatingRRAGC2016a)||| |
|
| 58 | +|[SGK1](SGK1)|Tier 1 GE[@morinFrequentMutationHistonemodifying2011], FE[@hartmannHighlyRecurrentMutations2016b], CE[@guoSGK1MutationStatus2022b], aSHM|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)|[@dunsCharacterizationDLBCLPMBL2021b]|| |
|
| 59 | +|[SMARCA4](SMARCA4)|Tier 1 GE[@krysiakRecurrentSomaticMutations2017b], FE[@dengSMARCA4HaploinsufficientCell2024], aSHM|[Krysiak et al](papers/krysiakRecurrentSomaticMutations2017b)|[@nadeuGenomicEpigenomicInsights2020b; @reddyGeneticFunctionalDrivers2017; @richterRecurrentMutationID32012a]|| |
|
| 60 | +|[STAT6](STAT6)|Tier 1 GE[@yildizActivatingSTAT6Mutations2015c], FE[@yildizActivatingSTAT6Mutations2015c], aSHM|[Yildiz et al](papers/yildizActivatingSTAT6Mutations2015c)|[@ritzRecurrentMutationsSTAT62009a]|| |
|
| 61 | +|[TBL1XR1](TBL1XR1)|Tier 1 GE, FE[@venturuttiTBL1XR1MutationsDrive2020b], aSHM||[@lohrDiscoveryPrioritizationSomatic2012a; @rossiCodingGenomeSplenic2012c]|| |
|
| 62 | +|[TMSB4X](TMSB4X)|Tier 1 GE, aSHM||[@zhangGeneticHeterogeneityDiffuse2013]|| |
|
| 63 | +|[TNFAIP3](TNFAIP3)|Tier 1 GE, FE[@compagnoMutationsMultipleGenes2009a], aSHM||[@compagnoMutationsMultipleGenes2009a; @rossiAlterationBIRC3Multiple2011a; @schmitzTNFAIP3A20Tumor2009a]|| |
|
| 64 | +|[TNFRSF14](TNFRSF14)|Tier 1 GE[@cheungAcquiredTNFRSF14Mutations2010a], CE[@guoSGK1MutationStatus2022b], aSHM|[Cheung et al](papers/cheungAcquiredTNFRSF14Mutations2010a)|[@morinFrequentMutationHistonemodifying2011; @spinaGeneticsNodalMarginal2016b]|| |
|
| 65 | +|[TP53](TP53)|Tier 1 GE[@morinFrequentMutationHistonemodifying2011], FE[@rowhTp53DeletionLineage2011], aSHM|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)|[@beaLandscapeSomaticMutations2013; @lohrDiscoveryPrioritizationSomatic2012a; @rossiCodingGenomeSplenic2012c; @tiacciPervasiveMutationsJAKSTAT2018b; @wildaInactivationARFMDM2p53Pathway2004]|| |
|
| 66 | 66 | |[VMA21](VMA21)|Tier 1 GE[@hubschmannMutationalMechanismsShaping2021b]|[Hubschmann et al](papers/hubschmannMutationalMechanismsShaping2021b)||| |
| 67 | 67 | |
| 68 | 68 | ## Tier 2 FL genes |
| ... | ... | @@ -70,78 +70,78 @@ link-citations: true |
| 70 | 70 | ### *64 total* |
| 71 | 71 | |
| 72 | 72 | |Gene|Summary| First FL study | Other entities | QC result | |
| 73 | -|:-:|:-:|:-:|:-|:-| |
|
| 73 | +|:-:|:--:|:-:|:-|:-| |
|
| 74 | 74 | |[ABL2](ABL2)|Tier 2 GE[@russler-germainMutationsAssociatedProgression2023b]|[Russler et al](papers/russler-germainMutationsAssociatedProgression2023b)||| |
| 75 | -|[ACTB](ACTB)|Tier 2 GE[@drevalGeneticSubdivisionsFollicular2023] (aSHM)|[Dreval et al](papers/drevalGeneticSubdivisionsFollicular2023)|[@lohrDiscoveryPrioritizationSomatic2012a; @wienandGenomicAnalysesFlowsorted2019b]|| |
|
| 76 | -|[ACTG1](ACTG1)|Tier 2 GE[@hubschmannMutationalMechanismsShaping2021b] (aSHM)|[Hubschmann et al](papers/hubschmannMutationalMechanismsShaping2021b)|[@deschGenotypingCirculatingTumor2020; @spinaGeneticsNodalMarginal2016b]|| |
|
| 75 | +|[ACTB](ACTB)|Tier 2 GE[@drevalGeneticSubdivisionsFollicular2023], aSHM|[Dreval et al](papers/drevalGeneticSubdivisionsFollicular2023)|[@lohrDiscoveryPrioritizationSomatic2012a; @wienandGenomicAnalysesFlowsorted2019b]|| |
|
| 76 | +|[ACTG1](ACTG1)|Tier 2 GE[@hubschmannMutationalMechanismsShaping2021b], aSHM|[Hubschmann et al](papers/hubschmannMutationalMechanismsShaping2021b)|[@deschGenotypingCirculatingTumor2020; @spinaGeneticsNodalMarginal2016b]|| |
|
| 77 | 77 | |[ATP6V1A](ATP6V1A)|Tier 2 GE[@hubschmannMutationalMechanismsShaping2021b]|[Hubschmann et al](papers/hubschmannMutationalMechanismsShaping2021b)||| |
| 78 | -|[BCL10](BCL10)|Tier 2 GE[@russler-germainMutationsAssociatedProgression2023b], FE[@xiaBCL10MutationsDefine2022] (aSHM)|[Russler et al](papers/russler-germainMutationsAssociatedProgression2023b)|[@morinFrequentMutationHistonemodifying2011; @spinaGeneticsNodalMarginal2016b]|| |
|
| 79 | -|[BCL6](BCL6)|Tier 2 GE[@drevalGeneticSubdivisionsFollicular2023], FE[@balSuperenhancerHypermutationAlters2022] (aSHM)|[Dreval et al](papers/drevalGeneticSubdivisionsFollicular2023)|[@loveGeneticLandscapeMutations2012; @morinFrequentMutationHistonemodifying2011]|| |
|
| 80 | -|[BIRC6](BIRC6)|Tier 2 GE (aSHM)||[@reddyGeneticFunctionalDrivers2017; @sarkozyMutationalLandscapeGray2021a]|| |
|
| 81 | -|[BTG1](BTG1)|Tier 2 GE[@drevalGeneticSubdivisionsFollicular2023], FE[@mlynarczykBTG1MutationYields2023b] (aSHM)|[Dreval et al](papers/drevalGeneticSubdivisionsFollicular2023)|[@burkhardtClinicalRelevanceMolecular2022b; @morinFrequentMutationHistonemodifying2011; @sarkozyMutationalLandscapeGray2021a]|| |
|
| 82 | -|[BTG2](BTG2)|Tier 2 GE[@drevalGeneticSubdivisionsFollicular2023], CE[@guoMutationBTG2Gene2022b] (aSHM)|[Dreval et al](papers/drevalGeneticSubdivisionsFollicular2023)|[@loveGeneticLandscapeMutations2012; @morinFrequentMutationHistonemodifying2011]|| |
|
| 83 | -|[CD70](CD70)|Tier 2 GE[@russler-germainMutationsAssociatedProgression2023b] (aSHM)|[Russler et al](papers/russler-germainMutationsAssociatedProgression2023b)|[@morinFrequentMutationHistonemodifying2011]|| |
|
| 84 | -|[CD79B](CD79B)|Tier 2 GE[@drevalGeneticSubdivisionsFollicular2023], FE[@davisChronicActiveBcellreceptor2010] (aSHM)|[Dreval et al](papers/drevalGeneticSubdivisionsFollicular2023)|[@morinFrequentMutationHistonemodifying2011; @paneaWholeGenomeLandscape2019]|| |
|
| 78 | +|[BCL10](BCL10)|Tier 2 GE[@russler-germainMutationsAssociatedProgression2023b], FE[@xiaBCL10MutationsDefine2022], aSHM|[Russler et al](papers/russler-germainMutationsAssociatedProgression2023b)|[@morinFrequentMutationHistonemodifying2011; @spinaGeneticsNodalMarginal2016b]|| |
|
| 79 | +|[BCL6](BCL6)|Tier 2 GE[@drevalGeneticSubdivisionsFollicular2023], FE[@balSuperenhancerHypermutationAlters2022], aSHM|[Dreval et al](papers/drevalGeneticSubdivisionsFollicular2023)|[@loveGeneticLandscapeMutations2012; @morinFrequentMutationHistonemodifying2011]|| |
|
| 80 | +|[BIRC6](BIRC6)|Tier 2 GE, aSHM||[@reddyGeneticFunctionalDrivers2017; @sarkozyMutationalLandscapeGray2021a]|| |
|
| 81 | +|[BTG1](BTG1)|Tier 2 GE[@drevalGeneticSubdivisionsFollicular2023], FE[@mlynarczykBTG1MutationYields2023b], aSHM|[Dreval et al](papers/drevalGeneticSubdivisionsFollicular2023)|[@burkhardtClinicalRelevanceMolecular2022b; @morinFrequentMutationHistonemodifying2011; @sarkozyMutationalLandscapeGray2021a]|| |
|
| 82 | +|[BTG2](BTG2)|Tier 2 GE[@drevalGeneticSubdivisionsFollicular2023], CE[@guoMutationBTG2Gene2022b], aSHM|[Dreval et al](papers/drevalGeneticSubdivisionsFollicular2023)|[@loveGeneticLandscapeMutations2012; @morinFrequentMutationHistonemodifying2011]|| |
|
| 83 | +|[CD70](CD70)|Tier 2 GE[@russler-germainMutationsAssociatedProgression2023b], aSHM|[Russler et al](papers/russler-germainMutationsAssociatedProgression2023b)|[@morinFrequentMutationHistonemodifying2011]|| |
|
| 84 | +|[CD79B](CD79B)|Tier 2 GE[@drevalGeneticSubdivisionsFollicular2023], FE[@davisChronicActiveBcellreceptor2010], aSHM|[Dreval et al](papers/drevalGeneticSubdivisionsFollicular2023)|[@morinFrequentMutationHistonemodifying2011; @paneaWholeGenomeLandscape2019]|| |
|
| 85 | 85 | |[CDC42BPB](CDC42BPB)|Tier 2 GE[@hubschmannMutationalMechanismsShaping2021b]|[Hubschmann et al](papers/hubschmannMutationalMechanismsShaping2021b)|[@spinaGeneticsNodalMarginal2016b]|| |
| 86 | 86 | |[CILP](CILP)|Tier 2 GE[@russler-germainMutationsAssociatedProgression2023b]|[Russler et al](papers/russler-germainMutationsAssociatedProgression2023b)||| |
| 87 | 87 | |[CPNE8](CPNE8)|Tier 2 GE[@hubschmannMutationalMechanismsShaping2021b]|[Hubschmann et al](papers/hubschmannMutationalMechanismsShaping2021b)||| |
| 88 | -|[CXCR4](CXCR4)|Tier 2 GE[@krysiakRecurrentSomaticMutations2017b] (aSHM)|[Krysiak et al](papers/krysiakRecurrentSomaticMutations2017b)|[@khodabakhshiRecurrentTargetsAberrant2012; @paneaWholeGenomeLandscape2019]|| |
|
| 88 | +|[CXCR4](CXCR4)|Tier 2 GE[@krysiakRecurrentSomaticMutations2017b], aSHM|[Krysiak et al](papers/krysiakRecurrentSomaticMutations2017b)|[@khodabakhshiRecurrentTargetsAberrant2012; @paneaWholeGenomeLandscape2019]|| |
|
| 89 | 89 | |[CYP2A6](CYP2A6)|Tier 2 GE[@russler-germainMutationsAssociatedProgression2023b]|[Russler et al](papers/russler-germainMutationsAssociatedProgression2023b)||| |
| 90 | -|[DDX3X](DDX3X)|Tier 2 GE, FE[@gongSequentialInverseDysregulation2021], CE[@kizhakeyilDDX3XLossAdverse2021] (aSHM)||[@mottokIntegrativeGenomicAnalysis2019b; @reddyGeneticFunctionalDrivers2017; @schmitzBurkittLymphomaPathogenesis2012]|| |
|
| 90 | +|[DDX3X](DDX3X)|Tier 2 GE, FE[@gongSequentialInverseDysregulation2021], CE[@kizhakeyilDDX3XLossAdverse2021], aSHM||[@mottokIntegrativeGenomicAnalysis2019b; @reddyGeneticFunctionalDrivers2017; @schmitzBurkittLymphomaPathogenesis2012]|| |
|
| 91 | 91 | |[DHX15](DHX15)|Tier 2 GE[@hubschmannMutationalMechanismsShaping2021b]|[Hubschmann et al](papers/hubschmannMutationalMechanismsShaping2021b)||| |
| 92 | -|[DTX1](DTX1)|Tier 2 GE, FE[@demirandaExomeSequencingReveals2014], CE[@merirantaDeltex1MutationsPredict2017b] (aSHM)||[@gomezUltraDeepSequencingReveals2023; @loveGeneticLandscapeMutations2012; @rossiCodingGenomeSplenic2012c; @zhangGeneticHeterogeneityDiffuse2013]|| |
|
| 93 | -|[DUSP2](DUSP2)|Tier 2 GE[@drevalGeneticSubdivisionsFollicular2023] (aSHM)|[Dreval et al](papers/drevalGeneticSubdivisionsFollicular2023)|[@dunsCharacterizationDLBCLPMBL2021b; @lohrDiscoveryPrioritizationSomatic2012a]|| |
|
| 94 | -|[EBF1](EBF1)|Tier 2 GE (aSHM)||[@bohleRoleEarlyBcell2013; @reichelFlowSortingExome2015a; @thomasGeneticSubgroupsInform2023]|| |
|
| 92 | +|[DTX1](DTX1)|Tier 2 GE, FE[@demirandaExomeSequencingReveals2014], CE[@merirantaDeltex1MutationsPredict2017b], aSHM||[@gomezUltraDeepSequencingReveals2023; @loveGeneticLandscapeMutations2012; @rossiCodingGenomeSplenic2012c; @zhangGeneticHeterogeneityDiffuse2013]|| |
|
| 93 | +|[DUSP2](DUSP2)|Tier 2 GE[@drevalGeneticSubdivisionsFollicular2023], aSHM|[Dreval et al](papers/drevalGeneticSubdivisionsFollicular2023)|[@dunsCharacterizationDLBCLPMBL2021b; @lohrDiscoveryPrioritizationSomatic2012a]|| |
|
| 94 | +|[EBF1](EBF1)|Tier 2 GE, aSHM||[@bohleRoleEarlyBcell2013; @reichelFlowSortingExome2015a; @thomasGeneticSubgroupsInform2023]|| |
|
| 95 | 95 | |[EGR1](EGR1)|Tier 2 GE[@krysiakRecurrentSomaticMutations2017b]|[Krysiak et al](papers/krysiakRecurrentSomaticMutations2017b)|[@reichelFlowSortingExome2015a; @rossiCodingGenomeSplenic2012c]|| |
| 96 | -|[FAS](FAS)|Tier 2 GE, FE[@seebergerLossFasCD952001] (aSHM)||[@schollMutationsRegionFAS2007; @spinaGeneticsNodalMarginal2016b]|| |
|
| 96 | +|[FAS](FAS)|Tier 2 GE, FE[@seebergerLossFasCD952001], aSHM||[@schollMutationsRegionFAS2007; @spinaGeneticsNodalMarginal2016b]|| |
|
| 97 | 97 | |[FZR1](FZR1)|Tier 2 GE[@hubschmannMutationalMechanismsShaping2021b]|[Hubschmann et al](papers/hubschmannMutationalMechanismsShaping2021b)||| |
| 98 | 98 | |[GBP7](GBP7)|Tier 2 GE[@russler-germainMutationsAssociatedProgression2023b]|[Russler et al](papers/russler-germainMutationsAssociatedProgression2023b)||| |
| 99 | -|[GNAI2](GNAI2)|Tier 2 GE (aSHM)||[@grandeGenomewideDiscoverySomatic2019; @morinMutationalStructuralAnalysis2013]|| |
|
| 99 | +|[GNAI2](GNAI2)|Tier 2 GE, aSHM||[@grandeGenomewideDiscoverySomatic2019; @morinMutationalStructuralAnalysis2013]|| |
|
| 100 | 100 | |[GRM6](GRM6)|Tier 2 GE[@russler-germainMutationsAssociatedProgression2023b]|[Russler et al](papers/russler-germainMutationsAssociatedProgression2023b)||| |
| 101 | 101 | |[HIST1H2BM](HIST1H2BM)|Tier 2 GE[@krysiakRecurrentSomaticMutations2017b]|[Krysiak et al](papers/krysiakRecurrentSomaticMutations2017b)||| |
| 102 | 102 | |[HIST1H3I](HIST1H3I)|Tier 2 GE[@krysiakRecurrentSomaticMutations2017b]|[Krysiak et al](papers/krysiakRecurrentSomaticMutations2017b)|[@paneaWholeGenomeLandscape2019]|| |
| 103 | -|[HLA-B](HLA-B)|Tier 2 GE (aSHM)||[@lohrDiscoveryPrioritizationSomatic2012a; @wienandGenomicAnalysesFlowsorted2019b]|| |
|
| 104 | -|[IGLL5](IGLL5)|Tier 2 GE[@russler-germainMutationsAssociatedProgression2023b] (aSHM)|[Russler et al](papers/russler-germainMutationsAssociatedProgression2023b)|[@chapuyMolecularSubtypesDiffuse2018b; @deschGenotypingCirculatingTumor2020; @paneaWholeGenomeLandscape2019]|| |
|
| 105 | -|[ITPKB](ITPKB)|Tier 2 GE[@drevalGeneticSubdivisionsFollicular2023] (aSHM)|[Dreval et al](papers/drevalGeneticSubdivisionsFollicular2023)|[@reichelFlowSortingExome2015a; @schmitzGeneticsPathogenesisDiffuse2018a]|| |
|
| 103 | +|[HLA-B](HLA-B)|Tier 2 GE, aSHM||[@lohrDiscoveryPrioritizationSomatic2012a; @wienandGenomicAnalysesFlowsorted2019b]|| |
|
| 104 | +|[IGLL5](IGLL5)|Tier 2 GE[@russler-germainMutationsAssociatedProgression2023b], aSHM|[Russler et al](papers/russler-germainMutationsAssociatedProgression2023b)|[@chapuyMolecularSubtypesDiffuse2018b; @deschGenotypingCirculatingTumor2020; @paneaWholeGenomeLandscape2019]|| |
|
| 105 | +|[ITPKB](ITPKB)|Tier 2 GE[@drevalGeneticSubdivisionsFollicular2023], aSHM|[Dreval et al](papers/drevalGeneticSubdivisionsFollicular2023)|[@reichelFlowSortingExome2015a; @schmitzGeneticsPathogenesisDiffuse2018a]|| |
|
| 106 | 106 | |[JUP](JUP)|Tier 2 GE[@hubschmannMutationalMechanismsShaping2021b]|[Hubschmann et al](papers/hubschmannMutationalMechanismsShaping2021b)||| |
| 107 | 107 | |[KIR3DL1](KIR3DL1)|Tier 2 GE[@russler-germainMutationsAssociatedProgression2023b]|[Russler et al](papers/russler-germainMutationsAssociatedProgression2023b)||| |
| 108 | -|[KLF2](KLF2)|Tier 2 GE[@drevalGeneticSubdivisionsFollicular2023] (aSHM)|[Dreval et al](papers/drevalGeneticSubdivisionsFollicular2023)|[@deschGenotypingCirculatingTumor2020; @jalladesExomeSequencingIdentifies2017; @pasqualucciAnalysisCodingGenome2011]|| |
|
| 109 | -|[LAPTM5](LAPTM5)|Tier 2 GE[@hubschmannMutationalMechanismsShaping2021b] (aSHM)|[Hubschmann et al](papers/hubschmannMutationalMechanismsShaping2021b)||| |
|
| 110 | -|[LTB](LTB)|Tier 2 GE[@drevalGeneticSubdivisionsFollicular2023] (aSHM)|[Dreval et al](papers/drevalGeneticSubdivisionsFollicular2023)|[@chapuyMolecularSubtypesDiffuse2018b; @deschGenotypingCirculatingTumor2020]|| |
|
| 108 | +|[KLF2](KLF2)|Tier 2 GE[@drevalGeneticSubdivisionsFollicular2023], aSHM|[Dreval et al](papers/drevalGeneticSubdivisionsFollicular2023)|[@deschGenotypingCirculatingTumor2020; @jalladesExomeSequencingIdentifies2017; @pasqualucciAnalysisCodingGenome2011]|| |
|
| 109 | +|[LAPTM5](LAPTM5)|Tier 2 GE[@hubschmannMutationalMechanismsShaping2021b], aSHM|[Hubschmann et al](papers/hubschmannMutationalMechanismsShaping2021b)||| |
|
| 110 | +|[LTB](LTB)|Tier 2 GE[@drevalGeneticSubdivisionsFollicular2023], aSHM|[Dreval et al](papers/drevalGeneticSubdivisionsFollicular2023)|[@chapuyMolecularSubtypesDiffuse2018b; @deschGenotypingCirculatingTumor2020]|| |
|
| 111 | 111 | |[MAGEC1](MAGEC1)|Tier 2 GE[@russler-germainMutationsAssociatedProgression2023b]|[Russler et al](papers/russler-germainMutationsAssociatedProgression2023b)||| |
| 112 | 112 | |[MAP7D1](MAP7D1)|Tier 2 GE[@russler-germainMutationsAssociatedProgression2023b]|[Russler et al](papers/russler-germainMutationsAssociatedProgression2023b)||| |
| 113 | -|[MEF2C](MEF2C)|Tier 2 GE, FE[@jingjingNovelMEF2CMutation2020] (aSHM)||[@arthurGenomewideDiscoverySomatic2018]|| |
|
| 113 | +|[MEF2C](MEF2C)|Tier 2 GE, FE[@jingjingNovelMEF2CMutation2020], aSHM||[@arthurGenomewideDiscoverySomatic2018]|| |
|
| 114 | 114 | |[MGEA5](MGEA5)|Tier 2 GE[@hubschmannMutationalMechanismsShaping2021b]|[Hubschmann et al](papers/hubschmannMutationalMechanismsShaping2021b)||| |
| 115 | 115 | |[MKI67](MKI67)|Tier 2 GE[@russler-germainMutationsAssociatedProgression2023b]|[Russler et al](papers/russler-germainMutationsAssociatedProgression2023b)|[@schmitzBurkittLymphomaPathogenesis2012]|| |
| 116 | -|[MYC](MYC)|Tier 2 GE, FE[@giallongoIdentificationCmycOncogene1983], CE[@christieCMYCTranslocation142008] (aSHM)||[@dunsCharacterizationDLBCLPMBL2021b; @jalladesExomeSequencingIdentifies2017; @johnstonCmycHypermutationBurkitt1992; @pasqualucciHypermutationMultipleProtooncogenes2001a]|| |
|
| 116 | +|[MYC](MYC)|Tier 2 GE, FE[@giallongoIdentificationCmycOncogene1983], CE[@christieCMYCTranslocation142008], aSHM||[@dunsCharacterizationDLBCLPMBL2021b; @jalladesExomeSequencingIdentifies2017; @johnstonCmycHypermutationBurkitt1992; @pasqualucciHypermutationMultipleProtooncogenes2001a]|| |
|
| 117 | 117 | |[MYCBP2](MYCBP2)|Tier 2 GE[@hubschmannMutationalMechanismsShaping2021b]|[Hubschmann et al](papers/hubschmannMutationalMechanismsShaping2021b)||| |
| 118 | -|[MYD88](MYD88)|Tier 2 GE[@drevalGeneticSubdivisionsFollicular2023], FE[@ngoOncogenicallyActiveMYD882011a], CE[@guoSGK1MutationStatus2022b] (aSHM)|[Dreval et al](papers/drevalGeneticSubdivisionsFollicular2023)|[@ngoOncogenicallyActiveMYD882011a; @yanBCRTLRSignaling2012a]|| |
|
| 119 | -|[NFKBIA](NFKBIA)|Tier 2 GE[@russler-germainMutationsAssociatedProgression2023b] (aSHM)|[Russler et al](papers/russler-germainMutationsAssociatedProgression2023b)|[@thomasMutationalAnalysisIkappaBalpha2004; @wienandGenomicAnalysesFlowsorted2019b]|| |
|
| 118 | +|[MYD88](MYD88)|Tier 2 GE[@drevalGeneticSubdivisionsFollicular2023], FE[@ngoOncogenicallyActiveMYD882011a], CE[@guoSGK1MutationStatus2022b], aSHM|[Dreval et al](papers/drevalGeneticSubdivisionsFollicular2023)|[@ngoOncogenicallyActiveMYD882011a; @yanBCRTLRSignaling2012a]|| |
|
| 119 | +|[NFKBIA](NFKBIA)|Tier 2 GE[@russler-germainMutationsAssociatedProgression2023b], aSHM|[Russler et al](papers/russler-germainMutationsAssociatedProgression2023b)|[@thomasMutationalAnalysisIkappaBalpha2004; @wienandGenomicAnalysesFlowsorted2019b]|| |
|
| 120 | 120 | |[OR8H2](OR8H2)|Tier 2 GE[@russler-germainMutationsAssociatedProgression2023b]|[Russler et al](papers/russler-germainMutationsAssociatedProgression2023b)||| |
| 121 | -|[P2RY8](P2RY8)|Tier 2 GE[@drevalGeneticSubdivisionsFollicular2023], FE[@muppidiLossSignalingGa132014b] (aSHM)|[Dreval et al](papers/drevalGeneticSubdivisionsFollicular2023)|[@lohrDiscoveryPrioritizationSomatic2012a; @muppidiLossSignalingGa132014b]|| |
|
| 122 | -|[PDS5B](PDS5B)|Tier 2 GE[@hubschmannMutationalMechanismsShaping2021b] (aSHM)|[Hubschmann et al](papers/hubschmannMutationalMechanismsShaping2021b)|[@morinMutationalStructuralAnalysis2013]|| |
|
| 121 | +|[P2RY8](P2RY8)|Tier 2 GE[@drevalGeneticSubdivisionsFollicular2023], FE[@muppidiLossSignalingGa132014b], aSHM|[Dreval et al](papers/drevalGeneticSubdivisionsFollicular2023)|[@lohrDiscoveryPrioritizationSomatic2012a; @muppidiLossSignalingGa132014b]|| |
|
| 122 | +|[PDS5B](PDS5B)|Tier 2 GE[@hubschmannMutationalMechanismsShaping2021b], aSHM|[Hubschmann et al](papers/hubschmannMutationalMechanismsShaping2021b)|[@morinMutationalStructuralAnalysis2013]|| |
|
| 123 | 123 | |[PPP4C](PPP4C)|Tier 2 GE[@hubschmannMutationalMechanismsShaping2021b]|[Hubschmann et al](papers/hubschmannMutationalMechanismsShaping2021b)||| |
| 124 | -|[PRKDC](PRKDC)|Tier 2 GE[@hubschmannMutationalMechanismsShaping2021b] (aSHM)|[Hubschmann et al](papers/hubschmannMutationalMechanismsShaping2021b)|[@schmitzGeneticsPathogenesisDiffuse2018a]|| |
|
| 125 | -|[PTPRD](PTPRD)|Tier 2 GE[@drevalGeneticSubdivisionsFollicular2023] (aSHM)|[Dreval et al](papers/drevalGeneticSubdivisionsFollicular2023)|[@spinaGeneticsNodalMarginal2016b]|| |
|
| 124 | +|[PRKDC](PRKDC)|Tier 2 GE[@hubschmannMutationalMechanismsShaping2021b], aSHM|[Hubschmann et al](papers/hubschmannMutationalMechanismsShaping2021b)|[@schmitzGeneticsPathogenesisDiffuse2018a]|| |
|
| 125 | +|[PTPRD](PTPRD)|Tier 2 GE[@drevalGeneticSubdivisionsFollicular2023], aSHM|[Dreval et al](papers/drevalGeneticSubdivisionsFollicular2023)|[@spinaGeneticsNodalMarginal2016b]|| |
|
| 126 | 126 | |[PZP](PZP)|Tier 2 GE[@russler-germainMutationsAssociatedProgression2023b]|[Russler et al](papers/russler-germainMutationsAssociatedProgression2023b)||| |
| 127 | 127 | |[RBM6](RBM6)|Tier 2 GE[@hubschmannMutationalMechanismsShaping2021b]|[Hubschmann et al](papers/hubschmannMutationalMechanismsShaping2021b)||| |
| 128 | -|[S1PR2](S1PR2)|Tier 2 GE[@drevalGeneticSubdivisionsFollicular2023], FE[@floriHematopoieticOncoproteinFOXP12016] (aSHM)|[Dreval et al](papers/drevalGeneticSubdivisionsFollicular2023)|[@morinFrequentMutationHistonemodifying2011; @muppidiLossSignalingGa132014b]|| |
|
| 128 | +|[S1PR2](S1PR2)|Tier 2 GE[@drevalGeneticSubdivisionsFollicular2023], FE[@floriHematopoieticOncoproteinFOXP12016], aSHM|[Dreval et al](papers/drevalGeneticSubdivisionsFollicular2023)|[@morinFrequentMutationHistonemodifying2011; @muppidiLossSignalingGa132014b]|| |
|
| 129 | 129 | |[SHROOM3](SHROOM3)|Tier 2 GE[@russler-germainMutationsAssociatedProgression2023b]|[Russler et al](papers/russler-germainMutationsAssociatedProgression2023b)||| |
| 130 | -|[SOCS1](SOCS1)|Tier 2 GE[@drevalGeneticSubdivisionsFollicular2023], FE[@melznerBiallelicMutationSOCS12005a] (aSHM)|[Dreval et al](papers/drevalGeneticSubdivisionsFollicular2023)|[@morinFrequentMutationHistonemodifying2011; @wenigerMutationsTumorSuppressor2006a]|| |
|
| 131 | -|[SRRM2](SRRM2)|Tier 2 GE[@russler-germainMutationsAssociatedProgression2023b] (aSHM)|[Russler et al](papers/russler-germainMutationsAssociatedProgression2023b)|[@morinMutationalStructuralAnalysis2013]|| |
|
| 130 | +|[SOCS1](SOCS1)|Tier 2 GE[@drevalGeneticSubdivisionsFollicular2023], FE[@melznerBiallelicMutationSOCS12005a], aSHM|[Dreval et al](papers/drevalGeneticSubdivisionsFollicular2023)|[@morinFrequentMutationHistonemodifying2011; @wenigerMutationsTumorSuppressor2006a]|| |
|
| 131 | +|[SRRM2](SRRM2)|Tier 2 GE[@russler-germainMutationsAssociatedProgression2023b], aSHM|[Russler et al](papers/russler-germainMutationsAssociatedProgression2023b)|[@morinMutationalStructuralAnalysis2013]|| |
|
| 132 | 132 | |[STAB2](STAB2)|Tier 2 GE[@russler-germainMutationsAssociatedProgression2023b]|[Russler et al](papers/russler-germainMutationsAssociatedProgression2023b)||| |
| 133 | -|[TMEM30A](TMEM30A)|Tier 2 GE[@morinFrequentMutationHistonemodifying2011], FE[@ennishiTMEM30ALossoffunctionMutations2020b], CE[@ennishiTMEM30ALossoffunctionMutations2020b] (aSHM)|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)||| |
|
| 133 | +|[TMEM30A](TMEM30A)|Tier 2 GE[@morinFrequentMutationHistonemodifying2011], FE[@ennishiTMEM30ALossoffunctionMutations2020b], CE[@ennishiTMEM30ALossoffunctionMutations2020b], aSHM|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)||| |
|
| 134 | 134 | |[TPP1](TPP1)|Tier 2 GE[@hubschmannMutationalMechanismsShaping2021b]|[Hubschmann et al](papers/hubschmannMutationalMechanismsShaping2021b)||| |
| 135 | 135 | |[XIRP2](XIRP2)|Tier 2 GE[@russler-germainMutationsAssociatedProgression2023b]|[Russler et al](papers/russler-germainMutationsAssociatedProgression2023b)||| |
| 136 | -|[ZC3H12A](ZC3H12A)|Tier 2 GE (aSHM)||[@chapuyMolecularSubtypesDiffuse2018b]|| |
|
| 137 | -|[ZNF608](ZNF608)|Tier 2 GE[@krysiakRecurrentSomaticMutations2017b] (aSHM)|[Krysiak et al](papers/krysiakRecurrentSomaticMutations2017b)|[@morinMutationalStructuralAnalysis2013]|| |
|
| 136 | +|[ZC3H12A](ZC3H12A)|Tier 2 GE, aSHM||[@chapuyMolecularSubtypesDiffuse2018b]|| |
|
| 137 | +|[ZNF608](ZNF608)|Tier 2 GE[@krysiakRecurrentSomaticMutations2017b], aSHM|[Krysiak et al](papers/krysiakRecurrentSomaticMutations2017b)|[@morinMutationalStructuralAnalysis2013]|| |
|
| 138 | 138 | |
| 139 | 139 | ## Tier 3 FL genes |
| 140 | 140 | |
| 141 | 141 | ### *0 total* |
| 142 | 142 | |
| 143 | 143 | |Gene|Summary| First FL study | Other entities | QC result | |
| 144 | -|:-:|:-:|:-:|:-|:-| |
|
| 144 | +|:-:|:--:|:-:|:-|:-| |
|
| 145 | 145 | |
| 146 | 146 | |
| 147 | 147 | # References |