Gene_lists.md
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-# B-cell Lymphoma gene lists
2
-| entity | Tier 1 | Tier 2 |
3
-| ----- | ----- | ----- |
4
-| DLBCL | [(147 genes)](tier1_dlbcl) |[(98 genes)](tier2_dlbcl) |
5
-| FL | [(66 genes)](tier1_fl) |[(34 genes)](tier2_fl) |
6
-| BL | [(29 genes)](tier1_bl) |[(189 genes)](tier2_bl) |
7
-| MCL | [(25 genes)](tier1_mcl) |[(30 genes)](tier2_mcl) |
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-## Gene_lists Expression
9
-![image](images/gene_expression/Gene_lists_by_pathology.svg)
tier1_bl.md
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-# BL genes
2
-## Origins of BL genes
3
-![sankey](BL_sankey-1.svg)
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-## Tier 1 BL genes
5
-|Category |Gene|BL mutation frequency|gene|protein|
6
-| :---: | :----: | :---: | :---: | :---: |
7
-|1|[ARID1A](ARID1A)|28.64|[view](images/proteinpaint/ARID1A.svg)|[view](images/proteinpaint/ARID1A_NM_006015.svg)|
8
-|1|[BMP7](BMP7)|6.47|[view](images/proteinpaint/BMP7.svg)|[view](images/proteinpaint/BMP7_NM_001719.svg)|
9
-|1|[CCND3](CCND3)|27.48|[view](images/proteinpaint/CCND3.svg)|[view](images/proteinpaint/CCND3_NM_001760.svg)|
10
-|1|[CHD8](CHD8)|8.78|[view](images/proteinpaint/CHD8.svg)|[view](images/proteinpaint/CHD8_NM_001170629.svg)|
11
-|1|[DDX3X](DDX3X)|44.34|[view](images/proteinpaint/DDX3X.svg)|[view](images/proteinpaint/DDX3X_NM_001356.svg)|
12
-|1|[EIF4A1](EIF4A1)|4.85|[view](images/proteinpaint/EIF4A1.svg)|[view](images/proteinpaint/EIF4A1_NM_001416.svg)|
13
-|1|[EPPK1](EPPK1)|6.47|[view](images/proteinpaint/EPPK1.svg)|[view](images/proteinpaint/EPPK1_NM_031308.svg)|
14
-|1|[FBXO11](FBXO11)|23.79|[view](images/proteinpaint/FBXO11.svg)|[view](images/proteinpaint/FBXO11_NM_025133.svg)|
15
-|1|[FOXO1](FOXO1)|23.33|[view](images/proteinpaint/FOXO1.svg)|[view](images/proteinpaint/FOXO1_NM_002015.svg)|
16
-|1|[GNA13](GNA13)|21.02|[view](images/proteinpaint/GNA13.svg)|[view](images/proteinpaint/GNA13_NM_006572.svg)|
17
-|1|[GNAI2](GNAI2)|11.32|[view](images/proteinpaint/GNAI2.svg)|[view](images/proteinpaint/GNAI2_NM_002070.svg)|
18
-|1-a|[HNRNPU](HNRNPU)|5.77|[view](images/proteinpaint/HNRNPU.svg)|[view](images/proteinpaint/HNRNPU_NM_031844.svg)|
19
-|1-a|[ID3](ID3)|45.50|[view](images/proteinpaint/ID3.svg)|[view](images/proteinpaint/ID3_NM_002167.svg)|
20
-|1|[KMT2D](KMT2D)|11.32|[view](images/proteinpaint/KMT2D.svg)|[view](images/proteinpaint/KMT2D_NM_003482.svg)|
21
-|1-a|[MYC](MYC)|61.89|[view](images/proteinpaint/MYC.svg)|[view](images/proteinpaint/MYC_NM_002467.svg)|
22
-|1|[P2RY8](P2RY8)|6.93|[view](images/proteinpaint/P2RY8.svg)|[view](images/proteinpaint/P2RY8_NM_178129.svg)|
23
-|1|[PCBP1](PCBP1)|12.24|[view](images/proteinpaint/PCBP1.svg)|[view](images/proteinpaint/PCBP1_NM_006196.svg)|
24
-|1|[PHF6](PHF6)|7.16|[view](images/proteinpaint/PHF6.svg)|[view](images/proteinpaint/PHF6_NM_001015877.svg)|
25
-|1|[PTEN](PTEN)|4.16|[view](images/proteinpaint/PTEN.svg)|[view](images/proteinpaint/PTEN_NM_000314.svg)|
26
-|1|[RFX7](RFX7)|9.47|[view](images/proteinpaint/RFX7.svg)|[view](images/proteinpaint/RFX7_NM_022841.svg)|
27
-|1|[RHOA](RHOA)|9.47|[view](images/proteinpaint/RHOA.svg)|[view](images/proteinpaint/RHOA_NM_001664.svg)|
28
-|1|[SIN3A](SIN3A)|11.09|[view](images/proteinpaint/SIN3A.svg)|[view](images/proteinpaint/SIN3A_NM_001145358.svg)|
29
-|1|[SMARCA4](SMARCA4)|22.63|[view](images/proteinpaint/SMARCA4.svg)|[view](images/proteinpaint/SMARCA4_NM_001128849.svg)|
30
-|1|[TCF3](TCF3)|11.55|[view](images/proteinpaint/TCF3.svg)|[view](images/proteinpaint/TCF3_NM_003200.svg)|
31
-|1-a|[TCL1A](TCL1A)|4.16|[view](images/proteinpaint/TCL1A.svg)|[view](images/proteinpaint/TCL1A_NM_021966.svg)|
32
-|1|[TFAP4](TFAP4)|10.16|[view](images/proteinpaint/TFAP4.svg)|[view](images/proteinpaint/TFAP4_NM_003223.svg)|
33
-|1|[TP53](TP53)|45.50|[view](images/proteinpaint/TP53.svg)|[view](images/proteinpaint/TP53_NM_000546.svg)|
34
-|1|[USP7](USP7)|6.47|[view](images/proteinpaint/USP7.svg)|[view](images/proteinpaint/USP7_NM_003470.svg)|
35
-|1|[WNK1](WNK1)|6.70|[view](images/proteinpaint/WNK1.svg)|[view](images/proteinpaint/WNK1_NM_018979.svg)|
tier1_dlbcl.md
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@@ -1,158 +0,0 @@
1
-# DLBCL genes
2
-## Origins of DLBCL genes
3
-![sankey](DLBCL_sankey-1.svg)
4
-## Tier 1 DLBCL genes
5
-|Category|Gene|Frequency(GAMBL)|gene|protein|
6
-| :---: | :----: | :---: | :---: | :---: |
7
-|1-a|[ACTB](ACTB)|9.18|[view](images/proteinpaint/ACTB.svg)|[view](images/proteinpaint/ACTB_NM_001101.svg)|
8
-|1-a|[ACTG1](ACTG1)|5.35|[view](images/proteinpaint/ACTG1.svg)|[view](images/proteinpaint/ACTG1_NM_001614.svg)|
9
-|1|[ARID1A](ARID1A)|8.80|[view](images/proteinpaint/ARID1A.svg)|[view](images/proteinpaint/ARID1A_NM_006015.svg)|
10
-|1|[ATM](ATM)|6.88|[view](images/proteinpaint/ATM.svg)|[view](images/proteinpaint/ATM_NM_000051.svg)|
11
-|1|[B2M](B2M)|15.11|[view](images/proteinpaint/B2M.svg)|[view](images/proteinpaint/B2M_NM_004048.svg)|
12
-|1|[BCL10](BCL10)|3.82|[view](images/proteinpaint/BCL10.svg)|[view](images/proteinpaint/BCL10_NM_003921.svg)|
13
-|1-a|[BCL11A](BCL11A)|4.02|[view](images/proteinpaint/BCL11A.svg)|[view](images/proteinpaint/BCL11A_NM_022893.svg)|
14
-|1-a|[BCL2](BCL2)|23.71|[view](images/proteinpaint/BCL2.svg)|[view](images/proteinpaint/BCL2_NM_000633.svg)|
15
-|1-a|[BCL6](BCL6)|11.66|[view](images/proteinpaint/BCL6.svg)|[view](images/proteinpaint/BCL6_NM_001706.svg)|
16
-|1-a|[BCL7A](BCL7A)|7.65|[view](images/proteinpaint/BCL7A.svg)|[view](images/proteinpaint/BCL7A_NM_020993.svg)|
17
-|1|[BCOR](BCOR)|3.82|[view](images/proteinpaint/BCOR.svg)|[view](images/proteinpaint/BCOR_NM_017745.svg)|
18
-|1-a|[BCR](BCR)|4.97|[view](images/proteinpaint/BCR.svg)|[view](images/proteinpaint/BCR_NM_004327.svg)|
19
-|1|[BIRC6](BIRC6)|7.27|[view](images/proteinpaint/BIRC6.svg)|[view](images/proteinpaint/BIRC6_NM_016252.svg)|
20
-|1|[BRAF](BRAF)|2.29|[view](images/proteinpaint/BRAF.svg)|[view](images/proteinpaint/BRAF_NM_004333.svg)|
21
-|1-a|[BTG1](BTG1)|10.13|[view](images/proteinpaint/BTG1.svg)|[view](images/proteinpaint/BTG1_NM_001731.svg)|
22
-|1-a|[BTG2](BTG2)|13.38|[view](images/proteinpaint/BTG2.svg)|[view](images/proteinpaint/BTG2_NM_006763.svg)|
23
-|1|[BTK](BTK)|6.88|[view](images/proteinpaint/BTK.svg)|[view](images/proteinpaint/BTK_NM_000061.svg)|
24
-|1|[CARD11](CARD11)|11.28|[view](images/proteinpaint/CARD11.svg)|[view](images/proteinpaint/CARD11_NM_032415.svg)|
25
-|1|[CASP8](CASP8)|2.68|[view](images/proteinpaint/CASP8.svg)|[view](images/proteinpaint/CASP8_NM_001228.svg)|
26
-|1|[CCND3](CCND3)|7.46|[view](images/proteinpaint/CCND3.svg)|[view](images/proteinpaint/CCND3_NM_001760.svg)|
27
-|1|[CD274](CD274)|0.96|[view](images/proteinpaint/CD274.svg)|[view](images/proteinpaint/CD274_NM_014143.svg)|
28
-|1|[CD36](CD36)|2.29|[view](images/proteinpaint/CD36.svg)|[view](images/proteinpaint/CD36_NM_001001548.svg)|
29
-|1|[CD58](CD58)|7.84|[view](images/proteinpaint/CD58.svg)|[view](images/proteinpaint/CD58_NM_001779.svg)|
30
-|1|[CD70](CD70)|5.54|[view](images/proteinpaint/CD70.svg)|[view](images/proteinpaint/CD70_NM_001252.svg)|
31
-|1|[CD79B](CD79B)|9.94|[view](images/proteinpaint/CD79B.svg)|[view](images/proteinpaint/CD79B_NM_000626.svg)|
32
-|1-a|[CD83](CD83)|4.40|[view](images/proteinpaint/CD83.svg)|[view](images/proteinpaint/CD83_NM_004233.svg)|
33
-|1|[CDKN2A](CDKN2A)|3.25|[view](images/proteinpaint/CDKN2A.svg)|[view](images/proteinpaint/CDKN2A_NM_000077.svg)|
34
-|1-a|[CIITA](CIITA)|2.87|[view](images/proteinpaint/CIITA.svg)|[view](images/proteinpaint/CIITA_NM_000246.svg)|
35
-|1|[CREBBP](CREBBP)|25.81|[view](images/proteinpaint/CREBBP.svg)|[view](images/proteinpaint/CREBBP_NM_004380.svg)|
36
-|1-a|[CXCR4](CXCR4)|2.87|[view](images/proteinpaint/CXCR4.svg)|[view](images/proteinpaint/CXCR4_NM_001008540.svg)|
37
-|1-a|[CXCR5](CXCR5)|1.91|[view](images/proteinpaint/CXCR5.svg)|[view](images/proteinpaint/CXCR5_NM_001716.svg)|
38
-|1|[DAZAP1](DAZAP1)|1.91|[view](images/proteinpaint/DAZAP1.svg)|[view](images/proteinpaint/DAZAP1_ENST00000233078.svg)|
39
-|1|[DDX3X](DDX3X)|8.80|[view](images/proteinpaint/DDX3X.svg)|[view](images/proteinpaint/DDX3X_NM_001356.svg)|
40
-|1-a|[DTX1](DTX1)|10.71|[view](images/proteinpaint/DTX1.svg)|[view](images/proteinpaint/DTX1_NM_004416.svg)|
41
-|1-a|[DUSP2](DUSP2)|10.13|[view](images/proteinpaint/DUSP2.svg)|[view](images/proteinpaint/DUSP2_NM_004418.svg)|
42
-|1-a|[EBF1](EBF1)|8.99|[view](images/proteinpaint/EBF1.svg)|[view](images/proteinpaint/EBF1_NM_024007.svg)|
43
-|1|[EEF1A1](EEF1A1)|4.78|[view](images/proteinpaint/EEF1A1.svg)|[view](images/proteinpaint/EEF1A1_NM_001402.svg)|
44
-|1|[EP300](EP300)|11.85|[view](images/proteinpaint/EP300.svg)|[view](images/proteinpaint/EP300_NM_001429.svg)|
45
-|1-a|[ETS1](ETS1)|4.59|[view](images/proteinpaint/ETS1.svg)|[view](images/proteinpaint/ETS1_NM_001143820.svg)|
46
-|1-a|[ETV6](ETV6)|4.97|[view](images/proteinpaint/ETV6.svg)|[view](images/proteinpaint/ETV6_NM_001987.svg)|
47
-|1|[EZH2](EZH2)|13.77|[view](images/proteinpaint/EZH2.svg)|[view](images/proteinpaint/EZH2_NM_001203247.svg)|
48
-|1|[FAS](FAS)|9.18|[view](images/proteinpaint/FAS.svg)|[view](images/proteinpaint/FAS_NM_000043.svg)|
49
-|1|[FBXO11](FBXO11)|3.82|[view](images/proteinpaint/FBXO11.svg)|[view](images/proteinpaint/FBXO11_NM_025133.svg)|
50
-|1|[FBXW7](FBXW7)|2.10|[view](images/proteinpaint/FBXW7.svg)|[view](images/proteinpaint/FBXW7_NM_033632.svg)|
51
-|1|[FOXC1](FOXC1)|0.96|[view](images/proteinpaint/FOXC1.svg)|[view](images/proteinpaint/FOXC1_NM_001453.svg)|
52
-|1|[FOXO1](FOXO1)|10.13|[view](images/proteinpaint/FOXO1.svg)|[view](images/proteinpaint/FOXO1_NM_002015.svg)|
53
-|1|[GNA13](GNA13)|11.66|[view](images/proteinpaint/GNA13.svg)|[view](images/proteinpaint/GNA13_NM_006572.svg)|
54
-|1|[GNAI2](GNAI2)|5.35|[view](images/proteinpaint/GNAI2.svg)|[view](images/proteinpaint/GNAI2_NM_002070.svg)|
55
-|1|[GRB2](GRB2)|3.25|[view](images/proteinpaint/GRB2.svg)|[view](images/proteinpaint/GRB2_NM_002086.svg)|
56
-|1-a|[GRHPR](GRHPR)|2.68|[view](images/proteinpaint/GRHPR.svg)|[view](images/proteinpaint/GRHPR_NM_012203.svg)|
57
-|1|[HIST1H1B](HIST1H1B)(H1-5)|8.41|[view](images/proteinpaint/HIST1H1B.svg)|[view](images/proteinpaint/HIST1H1B_NM_005322.svg)|
58
-|1|[HIST1H1C](HIST1H1C)(H1-2)|9.94|[view](images/proteinpaint/HIST1H1C.svg)|[view](images/proteinpaint/HIST1H1C_NM_005319.svg)|
59
-|1|[HIST1H1D](HIST1H1D)(H1-3)|6.12|[view](images/proteinpaint/HIST1H1D.svg)|[view](images/proteinpaint/HIST1H1D_NM_005320.svg)|
60
-|1|[HIST1H1E](HIST1H1E)(H1-4)|18.55|[view](images/proteinpaint/HIST1H1E.svg)|[view](images/proteinpaint/HIST1H1E_NM_005321.svg)|
61
-|1|[HIST1H2AC](HIST1H2AC)(H2AC6)|5.16|[view](images/proteinpaint/HIST1H2AC.svg)|[view](images/proteinpaint/H2AC6_NM_003512.svg)|
62
-|1|[HIST1H2AM](HIST1H2AM)(H2AC17)|5.93|[view](images/proteinpaint/HIST1H2AM.svg)|[view](images/proteinpaint/HIST1H2AM_NM_003514.svg)|
63
-|1|[HIST1H2BC](HIST1H2BC)(H2BC4)|4.59|[view](images/proteinpaint/HIST1H2BC.svg)|[LOAD](https://morinlab.github.io/LLMPP/GAMBL/HIST1H2BC_protein.html)|
64
-|1|[HIST1H2BK](HIST1H2BK)(H2BC12)|4.59|[view](images/proteinpaint/HIST1H2BK.svg)|[view](images/proteinpaint/HIST1H2BK_NM_080593.svg)|
65
-|1|[HIST1H3B](HIST1H3B)(H3C2)|2.10|[view](images/proteinpaint/HIST1H3B.svg)|[view](images/proteinpaint/H3C2_NM_003537.svg)|
66
-|1|[HIST2H2BE](HIST2H2BE)(H2BC21)|2.49|[view](images/proteinpaint/HIST2H2BE.svg)|[LOAD](https://morinlab.github.io/LLMPP/GAMBL/HIST2H2BE_protein.html)|
67
-|1|[HLA-A](HLA-A)|7.46|[view](images/proteinpaint/HLA-A.svg)|[view](images/proteinpaint/HLA-A_NM_002116.svg)|
68
-|1|[HLA-B](HLA-B)|9.18|[view](images/proteinpaint/HLA-B.svg)|[view](images/proteinpaint/HLA-B_NM_005514.svg)|
69
-|1|[HLA-C](HLA-C)|3.63|[view](images/proteinpaint/HLA-C.svg)|[view](images/proteinpaint/HLA-C_NM_002117.svg)|
70
-|1|[HLA-DMA](HLA-DMA)|0.38|[view](images/proteinpaint/HLA-DMA.svg)|[view](images/proteinpaint/HLA-DMA_NM_006120.svg)|
71
-|1|[HLA-DMB](HLA-DMB)|3.82|[view](images/proteinpaint/HLA-DMB.svg)|[view](images/proteinpaint/HLA-DMB_NM_002118.svg)|
72
-|1|[HLA-DQA1](HLA-DQA1)|0.38|[LOAD](https://morinlab.github.io/LLMPP/GAMBL/HLA-DQA1.html)|[LOAD](https://morinlab.github.io/LLMPP/GAMBL/HLA-DQA1_protein.html)|
73
-|1|[HNRNPD](HNRNPD)|2.10|[view](images/proteinpaint/HNRNPD.svg)|[view](images/proteinpaint/HNRNPD_NM_031370.svg)|
74
-|1|[HNRNPH1](HNRNPH1)|2.10|[view](images/proteinpaint/HNRNPH1.svg)|[view](images/proteinpaint/HNRNPH1_NM_005520.svg)|
75
-|1-a|[HNRNPU](HNRNPU)|2.49|[view](images/proteinpaint/HNRNPU.svg)|[view](images/proteinpaint/HNRNPU_NM_031844.svg)|
76
-|1|[HVCN1](HVCN1)|3.06|[view](images/proteinpaint/HVCN1.svg)|[view](images/proteinpaint/HVCN1_NM_001040107.svg)|
77
-|1-a|[IKZF3](IKZF3)|4.78|[view](images/proteinpaint/IKZF3.svg)|[view](images/proteinpaint/IKZF3_NM_012481.svg)|
78
-|1|[IL16](IL16)|2.29|[view](images/proteinpaint/IL16.svg)|[view](images/proteinpaint/IL16_NM_004513.svg)|
79
-|1-a|[IL4R](IL4R)|2.68|[view](images/proteinpaint/IL4R.svg)|[view](images/proteinpaint/IL4R_NM_000418.svg)|
80
-|1-a|[IRF4](IRF4)|4.40|[view](images/proteinpaint/IRF4.svg)|[view](images/proteinpaint/IRF4_NM_002460.svg)|
81
-|1-a|[IRF8](IRF8)|8.03|[view](images/proteinpaint/IRF8.svg)|[view](images/proteinpaint/IRF8_NM_002163.svg)|
82
-|1-a|[ITPKB](ITPKB)|6.69|[view](images/proteinpaint/ITPKB.svg)|[view](images/proteinpaint/ITPKB_NM_002221.svg)|
83
-|1|[JUNB](JUNB)|3.25|[view](images/proteinpaint/JUNB.svg)|[view](images/proteinpaint/JUNB_NM_002229.svg)|
84
-|1-a|[KLF2](KLF2)|8.60|[view](images/proteinpaint/KLF2.svg)|[view](images/proteinpaint/KLF2_NM_016270.svg)|
85
-|1|[KLHL14](KLHL14)|4.59|[view](images/proteinpaint/KLHL14.svg)|[view](images/proteinpaint/KLHL14_NM_020805.svg)|
86
-|1-a|[KLHL6](KLHL6)|5.35|[view](images/proteinpaint/KLHL6.svg)|[view](images/proteinpaint/KLHL6_NM_130446.svg)|
87
-|1|[KMT2C](KMT2C)|3.25|[view](images/proteinpaint/KMT2C.svg)|[view](images/proteinpaint/KMT2C_NM_170606.svg)|
88
-|1|[KMT2D](KMT2D)|33.46|[view](images/proteinpaint/KMT2D.svg)|[view](images/proteinpaint/KMT2D_NM_003482.svg)|
89
-|1|[KRAS](KRAS)|1.91|[view](images/proteinpaint/KRAS.svg)|[view](images/proteinpaint/KRAS_NM_033360.svg)|
90
-|1|[LCOR](LCOR)(C10orf12)|6.31|[view](images/proteinpaint/LCOR.svg)|[view](images/proteinpaint/LCOR_NM_001346516.svg)|
91
-|1-a|[LTB](LTB)|9.37|[view](images/proteinpaint/LTB.svg)|[view](images/proteinpaint/LTB_NM_002341.svg)|
92
-|1|[LYN](LYN)|2.29|[view](images/proteinpaint/LYN.svg)|[view](images/proteinpaint/LYN_ENST00000519728.svg)|
93
-|1-a|[MCL1](MCL1)|2.49|[view](images/proteinpaint/MCL1.svg)|[view](images/proteinpaint/MCL1_NM_021960.svg)|
94
-|1-a|[MEF2B](MEF2B)|11.28|[view](images/proteinpaint/MEF2B.svg)|[view](images/proteinpaint/MEF2B_NM_001145785.svg)|
95
-|1-a|[MEF2C](MEF2C)|3.44|[view](images/proteinpaint/MEF2C.svg)|[view](images/proteinpaint/MEF2C_NM_002397.svg)|
96
-|1|[MGA](MGA)|4.02|[view](images/proteinpaint/MGA.svg)|[view](images/proteinpaint/MGA_NM_001164273.svg)|
97
-|1|[MPEG1](MPEG1)|4.78|[view](images/proteinpaint/MPEG1.svg)|[LOAD](https://morinlab.github.io/LLMPP/GAMBL/MPEG1_protein.html)|
98
-|1-a|[MS4A1](MS4A1)|1.53|[view](images/proteinpaint/MS4A1.svg)|[LOAD](https://morinlab.github.io/LLMPP/GAMBL/MS4A1_protein.html)|
99
-|1|[MTOR](MTOR)|4.02|[view](images/proteinpaint/MTOR.svg)|[view](images/proteinpaint/MTOR_NM_004958.svg)|
100
-|1-a|[MYC](MYC)|10.90|[view](images/proteinpaint/MYC.svg)|[view](images/proteinpaint/MYC_NM_002467.svg)|
101
-|1|[MYD88](MYD88)|13.38|[view](images/proteinpaint/MYD88.svg)|[view](images/proteinpaint/MYD88_NM_002468.svg)|
102
-|1|[MYOM2](MYOM2)|3.25|[view](images/proteinpaint/MYOM2.svg)|[LOAD](https://morinlab.github.io/LLMPP/GAMBL/MYOM2_protein.html)|
103
-|1|[NCOR2](NCOR2)|2.10|[view](images/proteinpaint/NCOR2.svg)|[view](images/proteinpaint/NCOR2_NM_006312.svg)|
104
-|1|[NFKB1](NFKB1)|2.10|[view](images/proteinpaint/NFKB1.svg)|[view](images/proteinpaint/NFKB1_NM_003998.svg)|
105
-|1|[NFKBIA](NFKBIA)|4.40|[view](images/proteinpaint/NFKBIA.svg)|[view](images/proteinpaint/NFKBIA_NM_020529.svg)|
106
-|1|[NFKBIE](NFKBIE)|3.82|[view](images/proteinpaint/NFKBIE.svg)|[view](images/proteinpaint/NFKBIE_NM_004556.svg)|
107
-|1-a|[NFKBIZ](NFKBIZ)|1.53|[view](images/proteinpaint/NFKBIZ.svg)|[view](images/proteinpaint/NFKBIZ_zoom.svg)|
108
-|1|[NLRC5](NLRC5)|3.06|[view](images/proteinpaint/NLRC5.svg)|[view](images/proteinpaint/NLRC5_NM_032206.svg)|
109
-|1|[NOL9](NOL9)|4.97|[view](images/proteinpaint/NOL9.svg)|[view](images/proteinpaint/NOL9_NM_024654.svg)|
110
-|1|[NOTCH1](NOTCH1)|3.44|[view](images/proteinpaint/NOTCH1.svg)|[view](images/proteinpaint/NOTCH1_NM_017617.svg)|
111
-|1|[NOTCH2](NOTCH2)|5.74|[view](images/proteinpaint/NOTCH2.svg)|[view](images/proteinpaint/NOTCH2_NM_024408.svg)|
112
-|1-a|[OSBPL10](OSBPL10)|8.80|[view](images/proteinpaint/OSBPL10.svg)|[view](images/proteinpaint/OSBPL10_NM_017784.svg)|
113
-|1|[P2RY8](P2RY8)|6.88|[view](images/proteinpaint/P2RY8.svg)|[view](images/proteinpaint/P2RY8_NM_178129.svg)|
114
-|1|[PCBP1](PCBP1)|1.34|[view](images/proteinpaint/PCBP1.svg)|[view](images/proteinpaint/PCBP1_NM_006196.svg)|
115
-|1-a|[PIM1](PIM1)|20.27|[view](images/proteinpaint/PIM1.svg)|[view](images/proteinpaint/PIM1_NM_002648.svg)|
116
-|1-a|[PIM2](PIM2)|3.44|[view](images/proteinpaint/PIM2.svg)|[view](images/proteinpaint/PIM2_NM_006875.svg)|
117
-|1-a|[POU2AF1](POU2AF1)|5.16|[view](images/proteinpaint/POU2AF1.svg)|[view](images/proteinpaint/POU2AF1_NM_006235.svg)|
118
-|1|[POU2F2](POU2F2)|5.93|[view](images/proteinpaint/POU2F2.svg)|[view](images/proteinpaint/POU2F2_NM_002698.svg)|
119
-|1|[PRDM1](PRDM1)|6.88|[view](images/proteinpaint/PRDM1.svg)|[view](images/proteinpaint/PRDM1_NM_001198.svg)|
120
-|1|[PRKDC](PRKDC)|2.68|[view](images/proteinpaint/PRKDC.svg)|[view](images/proteinpaint/PRKDC_NM_006904.svg)|
121
-|1|[PTEN](PTEN)|3.82|[view](images/proteinpaint/PTEN.svg)|[view](images/proteinpaint/PTEN_NM_000314.svg)|
122
-|1|[PTPRD](PTPRD)|5.54|[view](images/proteinpaint/PTPRD.svg)|[view](images/proteinpaint/PTPRD_NM_002839.svg)|
123
-|1|[RB1](RB1)|4.78|[view](images/proteinpaint/RB1.svg)|[view](images/proteinpaint/RB1_NM_000321.svg)|
124
-|1|[RFX7](RFX7)|4.02|[view](images/proteinpaint/RFX7.svg)|[view](images/proteinpaint/RFX7_NM_022841.svg)|
125
-|1|[RFXAP](RFXAP)|1.34|[view](images/proteinpaint/RFXAP.svg)|[view](images/proteinpaint/RFXAP_NM_000538.svg)|
126
-|1|[RHOA](RHOA)|3.06|[view](images/proteinpaint/RHOA.svg)|[view](images/proteinpaint/RHOA_NM_001664.svg)|
127
-|1|[RRAGC](RRAGC)|1.72|[view](images/proteinpaint/RRAGC.svg)|[view](images/proteinpaint/RRAGC_NM_022157.svg)|
128
-|1-a|[S1PR2](S1PR2)|4.78|[view](images/proteinpaint/S1PR2.svg)|[view](images/proteinpaint/S1PR2_NM_004230.svg)|
129
-|1|[SETD1B](SETD1B)|5.16|[view](images/proteinpaint/SETD1B.svg)|[LOAD](https://morinlab.github.io/LLMPP/GAMBL/SETD1B_protein.html)|
130
-|1|[SF3B1](SF3B1)|2.87|[view](images/proteinpaint/SF3B1.svg)|[view](images/proteinpaint/SF3B1_NM_012433.svg)|
131
-|1-a|[SGK1](SGK1)|11.09|[view](images/proteinpaint/SGK1.svg)|[view](images/proteinpaint/SGK1_NM_005627.svg)|
132
-|1|[SIN3A](SIN3A)|3.06|[view](images/proteinpaint/SIN3A.svg)|[view](images/proteinpaint/SIN3A_NM_001145358.svg)|
133
-|1|[SMARCA4](SMARCA4)|3.25|[view](images/proteinpaint/SMARCA4.svg)|[view](images/proteinpaint/SMARCA4_NM_001128849.svg)|
134
-|1-a|[SOCS1](SOCS1)|15.30|[view](images/proteinpaint/SOCS1.svg)|[view](images/proteinpaint/SOCS1_NM_003745.svg)|
135
-|1|[SPEN](SPEN)|4.78|[view](images/proteinpaint/SPEN.svg)|[view](images/proteinpaint/SPEN_NM_015001.svg)|
136
-|1|[STAT3](STAT3)|7.07|[view](images/proteinpaint/STAT3.svg)|[view](images/proteinpaint/STAT3_NM_139276.svg)|
137
-|1|[STAT6](STAT6)|5.74|[view](images/proteinpaint/STAT6.svg)|[view](images/proteinpaint/STAT6_NM_003153.svg)|
138
-|1|[TAF1](TAF1)|4.78|[view](images/proteinpaint/TAF1.svg)|[view](images/proteinpaint/TAF1_NM_004606.svg)|
139
-|1|[TBL1XR1](TBL1XR1)|8.60|[view](images/proteinpaint/TBL1XR1.svg)|[view](images/proteinpaint/TBL1XR1_NM_024665.svg)|
140
-|1|[TET2](TET2)|5.54|[view](images/proteinpaint/TET2.svg)|[view](images/proteinpaint/TET2_NM_001127208.svg)|
141
-|1|[TMEM30A](TMEM30A)|4.78|[view](images/proteinpaint/TMEM30A.svg)|[view](images/proteinpaint/TMEM30A_NM_018247.svg)|
142
-|1-a|[TMSB4X](TMSB4X)|12.43|[view](images/proteinpaint/TMSB4X.svg)|[view](images/proteinpaint/TMSB4X_NM_021109.svg)|
143
-|1|[TNFAIP3](TNFAIP3)|6.69|[view](images/proteinpaint/TNFAIP3.svg)|[view](images/proteinpaint/TNFAIP3_NM_006290.svg)|
144
-|1|[TNFRSF14](TNFRSF14)|14.34|[view](images/proteinpaint/TNFRSF14.svg)|[view](images/proteinpaint/TNFRSF14_NM_003820.svg)|
145
-|1|[TOX](TOX)|4.21|[view](images/proteinpaint/TOX.svg)|[view](images/proteinpaint/TOX_NM_014729.svg)|
146
-|1|[TP53](TP53)|27.53|[view](images/proteinpaint/TP53.svg)|[view](images/proteinpaint/TP53_NM_000546.svg)|
147
-|1|[TRIP12](TRIP12)|3.25|[view](images/proteinpaint/TRIP12.svg)|[view](images/proteinpaint/TRIP12_NM_004238.svg)|
148
-|1|[TRRAP](TRRAP)|2.87|[view](images/proteinpaint/TRRAP.svg)|[view](images/proteinpaint/TRRAP_NM_003496.svg)|
149
-|1|[UBE2A](UBE2A)|4.21|[view](images/proteinpaint/UBE2A.svg)|[view](images/proteinpaint/UBE2A_NM_003336.svg)|
150
-|1|[UNC5C](UNC5C)|3.44|[view](images/proteinpaint/UNC5C.svg)|[view](images/proteinpaint/UNC5C_NM_003728.svg)|
151
-|1|[USP7](USP7)|1.34|[view](images/proteinpaint/USP7.svg)|[view](images/proteinpaint/USP7_NM_003470.svg)|
152
-|1|[VPS13B](VPS13B)|4.21|[view](images/proteinpaint/VPS13B.svg)|[view](images/proteinpaint/VPS13B_NM_152564.svg)|
153
-|1-a|[WEE1](WEE1)|4.02|[view](images/proteinpaint/WEE1.svg)|[view](images/proteinpaint/WEE1_NM_003390.svg)|
154
-|1|[XPO1](XPO1)|3.82|[view](images/proteinpaint/XPO1.svg)|[view](images/proteinpaint/XPO1_NM_003400.svg)|
155
-|1|[ZC3H12A](ZC3H12A)|2.68|[view](images/proteinpaint/ZC3H12A.svg)|[view](images/proteinpaint/ZC3H12A_NM_025079.svg)|
156
-|1-a|[ZFP36L1](ZFP36L1)|6.69|[view](images/proteinpaint/ZFP36L1.svg)|[view](images/proteinpaint/ZFP36L1_NM_004926.svg)|
157
-|1|[ZNF292](ZNF292)|5.35|[view](images/proteinpaint/ZNF292.svg)|[view](images/proteinpaint/ZNF292_NM_015021.svg)|
158
-|1|[ZNF608](ZNF608)|6.12|[view](images/proteinpaint/ZNF608.svg)|[view](images/proteinpaint/ZNF608_NM_020747.svg)|
tier1_fl.md
... ...
@@ -1,71 +0,0 @@
1
-# FL genes
2
-## Origins of FL genes
3
-![sankey](FL_sankey-1.svg)
4
-## Tier 1 FL genes
5
-|Category|Gene|FL Mutation frequency|gene|protein|
6
-| :---: | :----: | :---: | :---: | :---: |
7
-|1-a|[ACTB](ACTB)|5.31|[view](images/proteinpaint/ACTB.svg)|[view](images/proteinpaint/ACTB_NM_001101.svg)|
8
-|1|[ARID1A](ARID1A)|12.47|[view](images/proteinpaint/ARID1A.svg)|[view](images/proteinpaint/ARID1A_NM_006015.svg)|
9
-|1|[ATP6AP1](ATP6AP1)|4.85|[view](images/proteinpaint/ATP6AP1.svg)|[view](images/proteinpaint/ATP6AP1_NM_001183.svg)|
10
-|1|[ATP6V1B2](ATP6V1B2)|7.39|[view](images/proteinpaint/ATP6V1B2.svg)|[view](images/proteinpaint/ATP6V1B2_NM_001693.svg)|
11
-|1|[B2M](B2M)|8.55|[view](images/proteinpaint/B2M.svg)|[view](images/proteinpaint/B2M_NM_004048.svg)|
12
-|1-a|[BCL2](BCL2)|50.35|[view](images/proteinpaint/BCL2.svg)|[view](images/proteinpaint/BCL2_NM_000633.svg)|
13
-|1-a|[BCL6](BCL6)|5.77|[view](images/proteinpaint/BCL6.svg)|[view](images/proteinpaint/BCL6_NM_001706.svg)|
14
-|1-a|[BCL7A](BCL7A)|13.86|[view](images/proteinpaint/BCL7A.svg)|[view](images/proteinpaint/BCL7A_NM_020993.svg)|
15
-|1|[BIRC6](BIRC6)|3.70|[view](images/proteinpaint/BIRC6.svg)|[view](images/proteinpaint/BIRC6_NM_016252.svg)|
16
-|1-a|[BTG1](BTG1)|6.47|[view](images/proteinpaint/BTG1.svg)|[view](images/proteinpaint/BTG1_NM_001731.svg)|
17
-|1-a|[BTG2](BTG2)|4.39|[view](images/proteinpaint/BTG2.svg)|[view](images/proteinpaint/BTG2_NM_006763.svg)|
18
-|1|[BTK](BTK)|6.93|[view](images/proteinpaint/BTK.svg)|[view](images/proteinpaint/BTK_NM_000061.svg)|
19
-|1|[CARD11](CARD11)|14.78|[view](images/proteinpaint/CARD11.svg)|[view](images/proteinpaint/CARD11_NM_032415.svg)|
20
-|1|[CCND3](CCND3)|3.23|[view](images/proteinpaint/CCND3.svg)|[view](images/proteinpaint/CCND3_NM_001760.svg)|
21
-|1-a|[CD83](CD83)|1.85|[view](images/proteinpaint/CD83.svg)|[view](images/proteinpaint/CD83_NM_004233.svg)|
22
-|1|[CREBBP](CREBBP)|65.13|[view](images/proteinpaint/CREBBP.svg)|[view](images/proteinpaint/CREBBP_NM_004380.svg)|
23
-|1|[CTSS](CTSS)|3.93|[view](images/proteinpaint/CTSS.svg)|[view](images/proteinpaint/CTSS_NM_004079.svg)|
24
-|1-a|[DTX1](DTX1)|5.54|[view](images/proteinpaint/DTX1.svg)|[view](images/proteinpaint/DTX1_NM_004416.svg)|
25
-|1-a|[EBF1](EBF1)|8.55|[view](images/proteinpaint/EBF1.svg)|[view](images/proteinpaint/EBF1_NM_024007.svg)|
26
-|1|[EP300](EP300)|12.47|[view](images/proteinpaint/EP300.svg)|[view](images/proteinpaint/EP300_NM_001429.svg)|
27
-|1|[EZH2](EZH2)|24.94|[view](images/proteinpaint/EZH2.svg)|[view](images/proteinpaint/EZH2_NM_001203247.svg)|
28
-|1|[FAS](FAS)|5.08|[view](images/proteinpaint/FAS.svg)|[view](images/proteinpaint/FAS_NM_000043.svg)|
29
-|1|[FOXO1](FOXO1)|12.93|[view](images/proteinpaint/FOXO1.svg)|[view](images/proteinpaint/FOXO1_NM_002015.svg)|
30
-|1|[GNA13](GNA13)|10.16|[view](images/proteinpaint/GNA13.svg)|[view](images/proteinpaint/GNA13_NM_006572.svg)|
31
-|1|[GNAI2](GNAI2)|4.16|[view](images/proteinpaint/GNAI2.svg)|[view](images/proteinpaint/GNAI2_NM_002070.svg)|
32
-|1|[HIST1H1B](HIST1H1B)(H1-5)|5.54|[view](images/proteinpaint/HIST1H1B.svg)|[view](images/proteinpaint/HIST1H1B_NM_005322.svg)|
33
-|1|[HIST1H1C](HIST1H1C)(H1-2)|5.08|[view](images/proteinpaint/HIST1H1C.svg)|[view](images/proteinpaint/HIST1H1C_NM_005319.svg)|
34
-|1|[HIST1H1D](HIST1H1D)(H1-3)|3.23|[view](images/proteinpaint/HIST1H1D.svg)|[view](images/proteinpaint/HIST1H1D_NM_005320.svg)|
35
-|1|[HIST1H1E](HIST1H1E)(H1-4)|12.93|[view](images/proteinpaint/HIST1H1E.svg)|[view](images/proteinpaint/HIST1H1E_NM_005321.svg)|
36
-|1|[HIST1H2AC](HIST1H2AC)(H2AC6)|2.31|[view](images/proteinpaint/HIST1H2AC.svg)|[view](images/proteinpaint/H2AC6_NM_003512.svg)|
37
-|1|[HIST1H2AG](HIST1H2AG)(H2AC11)|2.08|[view](images/proteinpaint/HIST1H2AG.svg)|[view](images/proteinpaint/HIST1H2AG_NM_021064.svg)|
38
-|1|[HIST1H2AM](HIST1H2AM)(H2AC17)|3.70|[view](images/proteinpaint/HIST1H2AM.svg)|[view](images/proteinpaint/HIST1H2AM_NM_003514.svg)|
39
-|1|[HIST1H2BC](HIST1H2BC)(H2BC4)|3.46|[view](images/proteinpaint/HIST1H2BC.svg)|[LOAD](https://morinlab.github.io/LLMPP/GAMBL/HIST1H2BC_protein.html)|
40
-|1|[HIST1H2BD](HIST1H2BD)(H2BC5)|1.15|[view](images/proteinpaint/HIST1H2BD.svg)|[LOAD](https://morinlab.github.io/LLMPP/GAMBL/HIST1H2BD_protein.html)|
41
-|1|[HIST1H2BG](HIST1H2BG)(H2BC8)|2.08|[view](images/proteinpaint/HIST1H2BG.svg)|[LOAD](https://morinlab.github.io/LLMPP/GAMBL/HIST1H2BG_protein.html)|
42
-|1|[HIST1H3B](HIST1H3B)(H3C2)|1.62|[view](images/proteinpaint/HIST1H3B.svg)|[view](images/proteinpaint/H3C2_NM_003537.svg)|
43
-|1|[HIST1H3G](HIST1H3G)(H3C8)|1.62|[view](images/proteinpaint/HIST1H3G.svg)|[view](images/proteinpaint/HIST1H3G_NM_003534.svg)|
44
-|1|[HVCN1](HVCN1)|6.47|[view](images/proteinpaint/HVCN1.svg)|[view](images/proteinpaint/HVCN1_NM_001040107.svg)|
45
-|1-a|[IRF4](IRF4)|1.15|[view](images/proteinpaint/IRF4.svg)|[view](images/proteinpaint/IRF4_NM_002460.svg)|
46
-|1-a|[IRF8](IRF8)|12.01|[view](images/proteinpaint/IRF8.svg)|[view](images/proteinpaint/IRF8_NM_002163.svg)|
47
-|1-a|[ITPKB](ITPKB)|3.23|[view](images/proteinpaint/ITPKB.svg)|[view](images/proteinpaint/ITPKB_NM_002221.svg)|
48
-|1-a|[KLF2](KLF2)|2.31|[view](images/proteinpaint/KLF2.svg)|[view](images/proteinpaint/KLF2_NM_016270.svg)|
49
-|1-a|[KLHL6](KLHL6)|7.16|[view](images/proteinpaint/KLHL6.svg)|[view](images/proteinpaint/KLHL6_NM_130446.svg)|
50
-|1|[KMT2D](KMT2D)|67.67|[view](images/proteinpaint/KMT2D.svg)|[view](images/proteinpaint/KMT2D_NM_003482.svg)|
51
-|1-a|[LTB](LTB)|8.78|[view](images/proteinpaint/LTB.svg)|[view](images/proteinpaint/LTB_NM_002341.svg)|
52
-|1|[MAP2K1](MAP2K1)|1.39|[view](images/proteinpaint/MAP2K1.svg)|[view](images/proteinpaint/MAP2K1_NM_002755.svg)|
53
-|1-a|[MEF2B](MEF2B)|12.93|[view](images/proteinpaint/MEF2B.svg)|[view](images/proteinpaint/MEF2B_NM_001145785.svg)|
54
-|1-a|[MEF2C](MEF2C)|6.24|[view](images/proteinpaint/MEF2C.svg)|[view](images/proteinpaint/MEF2C_NM_002397.svg)|
55
-|1|[PCLO](PCLO)|9.24|[view](images/proteinpaint/PCLO.svg)|[view](images/proteinpaint/PCLO_NM_033026.svg)|
56
-|1-a|[PIM1](PIM1)|9.24|[view](images/proteinpaint/PIM1.svg)|[view](images/proteinpaint/PIM1_NM_002648.svg)|
57
-|1-a|[POU2AF1](POU2AF1)|12.24|[view](images/proteinpaint/POU2AF1.svg)|[view](images/proteinpaint/POU2AF1_NM_006235.svg)|
58
-|1|[POU2F2](POU2F2)|6.24|[view](images/proteinpaint/POU2F2.svg)|[view](images/proteinpaint/POU2F2_NM_002698.svg)|
59
-|1|[PTPRD](PTPRD)|3.70|[view](images/proteinpaint/PTPRD.svg)|[view](images/proteinpaint/PTPRD_NM_002839.svg)|
60
-|1|[RRAGC](RRAGC)|10.85|[view](images/proteinpaint/RRAGC.svg)|[view](images/proteinpaint/RRAGC_NM_022157.svg)|
61
-|1-a|[S1PR2](S1PR2)|6.24|[view](images/proteinpaint/S1PR2.svg)|[view](images/proteinpaint/S1PR2_NM_004230.svg)|
62
-|1-a|[SGK1](SGK1)|6.00|[view](images/proteinpaint/SGK1.svg)|[view](images/proteinpaint/SGK1_NM_005627.svg)|
63
-|1|[SMARCA4](SMARCA4)|4.16|[view](images/proteinpaint/SMARCA4.svg)|[view](images/proteinpaint/SMARCA4_NM_001128849.svg)|
64
-|1-a|[SOCS1](SOCS1)|9.70|[view](images/proteinpaint/SOCS1.svg)|[view](images/proteinpaint/SOCS1_NM_003745.svg)|
65
-|1|[STAT6](STAT6)|15.94|[view](images/proteinpaint/STAT6.svg)|[view](images/proteinpaint/STAT6_NM_003153.svg)|
66
-|1|[TBL1XR1](TBL1XR1)|3.93|[view](images/proteinpaint/TBL1XR1.svg)|[view](images/proteinpaint/TBL1XR1_NM_024665.svg)|
67
-|1-a|[TMSB4X](TMSB4X)|4.39|[view](images/proteinpaint/TMSB4X.svg)|[view](images/proteinpaint/TMSB4X_NM_021109.svg)|
68
-|1|[TNFAIP3](TNFAIP3)|4.85|[view](images/proteinpaint/TNFAIP3.svg)|[view](images/proteinpaint/TNFAIP3_NM_006290.svg)|
69
-|1|[TNFRSF14](TNFRSF14)|40.42|[view](images/proteinpaint/TNFRSF14.svg)|[view](images/proteinpaint/TNFRSF14_NM_003820.svg)|
70
-|1|[TP53](TP53)|6.93|[view](images/proteinpaint/TP53.svg)|[view](images/proteinpaint/TP53_NM_000546.svg)|
71
-|1|[VMA21](VMA21)|5.08|[view](images/proteinpaint/VMA21.svg)|[view](images/proteinpaint/VMA21_NM_001017980.svg)|
tier1_mcl.md
... ...
@@ -1,27 +0,0 @@
1
-# MCL genes, Tier 1
2
-|Category|Gene|Frequency(GAMBL)|gene|protein|
3
-| :---: | :----: | :---: | :---: | :---: |
4
-|1|[ATM](ATM)|45.02|[view](images/proteinpaint/ATM.svg)|[view](images/proteinpaint/ATM_NM_000051.svg)|
5
-|1|[BCOR](BCOR)|3.79|[view](images/proteinpaint/BCOR.svg)|[view](images/proteinpaint/BCOR_NM_017745.svg)|
6
-|1-a|[BIRC3](BIRC3)|7.11|[view](images/proteinpaint/BIRC3.svg)|[view](images/proteinpaint/BIRC3_NM_001165.svg)|
7
-|1|[CARD11](CARD11)|1.42|[view](images/proteinpaint/CARD11.svg)|[view](images/proteinpaint/CARD11_NM_032415.svg)|
8
-|1|[CCND1](CCND1)|14.69|[view](images/proteinpaint/CCND1.svg)|[view](images/proteinpaint/CCND1_NM_053056.svg)|
9
-|1|[DAZAP1](DAZAP1)|4.27|[view](images/proteinpaint/DAZAP1.svg)|[view](images/proteinpaint/DAZAP1_ENST00000233078.svg)|
10
-|1|[EWSR1](EWSR1)|3.32|[view](images/proteinpaint/EWSR1.svg)|[view](images/proteinpaint/EWSR1_NM_013986.svg)|
11
-|1|[HNRNPH1](HNRNPH1)|3.79|[view](images/proteinpaint/HNRNPH1.svg)|[view](images/proteinpaint/HNRNPH1_NM_005520.svg)|
12
-|1|[KMT2D](KMT2D)|16.59|[view](images/proteinpaint/KMT2D.svg)|[view](images/proteinpaint/KMT2D_NM_003482.svg)|
13
-|1-a|[MEF2B](MEF2B)|5.69|[view](images/proteinpaint/MEF2B.svg)|[view](images/proteinpaint/MEF2B_NM_001145785.svg)|
14
-|1|[NOTCH1](NOTCH1)|5.21|[view](images/proteinpaint/NOTCH1.svg)|[view](images/proteinpaint/NOTCH1_NM_017617.svg)|
15
-|1|[NOTCH2](NOTCH2)|2.84|[view](images/proteinpaint/NOTCH2.svg)|[view](images/proteinpaint/NOTCH2_NM_024408.svg)|
16
-|1|[NSD2](NSD2)|7.11|[view](images/proteinpaint/NSD2.svg)|[view](images/proteinpaint/NSD2_NM_133330.svg)|
17
-|1|[RB1](RB1)|0.47|[view](images/proteinpaint/RB1.svg)|[view](images/proteinpaint/RB1_NM_000321.svg)|
18
-|1|[S1PR1](S1PR1)|5.69|[view](images/proteinpaint/S1PR1.svg)|[view](images/proteinpaint/S1PR1_NM_001400.svg)|
19
-|1|[SMARCA4](SMARCA4)|4.74|[view](images/proteinpaint/SMARCA4.svg)|[view](images/proteinpaint/SMARCA4_NM_001128849.svg)|
20
-|1|[SP140](SP140)|5.21|[view](images/proteinpaint/SP140.svg)|[view](images/proteinpaint/SP140_NM_007237.svg)|
21
-|1|[SYNE1](SYNE1)|4.74|[view](images/proteinpaint/SYNE1.svg)|[view](images/proteinpaint/SYNE1_NM_182961.svg)|
22
-|1|[TERT](TERT)|0|[view](images/proteinpaint/TERT.svg)|[view](images/proteinpaint/TERT_NM_198253.svg)|
23
-|1|[TLR2](TLR2)|0|[view](images/proteinpaint/TLR2.svg)|[view](images/proteinpaint/TLR2_NM_003264.svg)|
24
-|1|[TP53](TP53)|9|[view](images/proteinpaint/TP53.svg)|[view](images/proteinpaint/TP53_NM_000546.svg)|
25
-|1|[UBR5](UBR5)|9|[view](images/proteinpaint/UBR5.svg)|[view](images/proteinpaint/UBR5_NM_015902.svg)|
26
-|1|[NFKBIE](NFKBIE)|2.84|[view](images/proteinpaint/NFKBIE.svg)|[view](images/proteinpaint/NFKBIE_NM_004556.svg)|
27
-|1|[POT1](POT1)|3.32|[view](images/proteinpaint/POT1.svg)|[view](images/proteinpaint/POT1_NM_015450.svg)|
tier2_bl.md
... ...
@@ -1,194 +0,0 @@
1
-# BL genes
2
-## Origins of BL genes
3
-![sankey](BL_sankey-1.svg)
4
-## Tier 2 BL genes
5
-|Category|Gene|BL mutation frequency|gene|protein|
6
-| :---: | :----: | :---: | :---: | :---: |
7
-|2|[ALPK2](ALPK2)|3.93|[view](images/proteinpaint/ALPK2.svg)|[view](images/proteinpaint/ALPK2_NM_052947.svg)|
8
-|2|[B2M](B2M)|2.31|[view](images/proteinpaint/B2M.svg)|[view](images/proteinpaint/B2M_NM_004048.svg)|
9
-|2-a|[BACH2](BACH2)|1.85|[view](images/proteinpaint/BACH2.svg)|[view](images/proteinpaint/BACH2_NM_021813.svg)|
10
-|2|[BCL10](BCL10)|0.23|[view](images/proteinpaint/BCL10.svg)|[view](images/proteinpaint/BCL10_NM_003921.svg)|
11
-|2-a|[BCL11A](BCL11A)|2.54|[view](images/proteinpaint/BCL11A.svg)|[view](images/proteinpaint/BCL11A_NM_022893.svg)|
12
-|2-a|[BCL2](BCL2)|0.46|[view](images/proteinpaint/BCL2.svg)|[view](images/proteinpaint/BCL2_NM_000633.svg)|
13
-|2-a|[BCL2L11](BCL2L11)|1.62|[view](images/proteinpaint/BCL2L11.svg)|[view](images/proteinpaint/BCL2L11_NM_138621.svg)|
14
-|2-a|[BCL6](BCL6)|5.08|[view](images/proteinpaint/BCL6.svg)|[view](images/proteinpaint/BCL6_NM_001706.svg)|
15
-|2-a|[BCL7A](BCL7A)|5.31|[view](images/proteinpaint/BCL7A.svg)|[view](images/proteinpaint/BCL7A_NM_020993.svg)|
16
-|2-a|[BCR](BCR)|6.00|[view](images/proteinpaint/BCR.svg)|[view](images/proteinpaint/BCR_NM_004327.svg)|
17
-|2|[BIRC6](BIRC6)|6.00|[view](images/proteinpaint/BIRC6.svg)|[view](images/proteinpaint/BIRC6_NM_016252.svg)|
18
-|2-a|[BTG2](BTG2)|4.85|[view](images/proteinpaint/BTG2.svg)|[view](images/proteinpaint/BTG2_NM_006763.svg)|
19
-|2|[LCOR](LCOR)(C10orf12)|3.46|[view](images/proteinpaint/LCOR.svg)|[view](images/proteinpaint/LCOR_NM_001346516.svg)|
20
-|2|[CARD11](CARD11)|4.16|[view](images/proteinpaint/CARD11.svg)|[view](images/proteinpaint/CARD11_NM_032415.svg)|
21
-|2|[CCNF](CCNF)|1.62|[view](images/proteinpaint/CCNF.svg)|[view](images/proteinpaint/CCNF_NM_001761.svg)|
22
-|2|[CD58](CD58)|0.92|[view](images/proteinpaint/CD58.svg)|[view](images/proteinpaint/CD58_NM_001779.svg)|
23
-|2|[CD70](CD70)|0.92|[view](images/proteinpaint/CD70.svg)|[view](images/proteinpaint/CD70_NM_001252.svg)|
24
-|2|[CD79B](CD79B)|1.39|[view](images/proteinpaint/CD79B.svg)|[view](images/proteinpaint/CD79B_NM_000626.svg)|
25
-|2-a|[CD83](CD83)|1.15|[view](images/proteinpaint/CD83.svg)|[view](images/proteinpaint/CD83_NM_004233.svg)|
26
-|2|[CDKN2A](CDKN2A)|1.85|[view](images/proteinpaint/CDKN2A.svg)|[view](images/proteinpaint/CDKN2A_NM_000077.svg)|
27
-|2|[CDKN2C](CDKN2C)|2.54|[view](images/proteinpaint/CDKN2C.svg)|[view](images/proteinpaint/CDKN2C_NM_001262.svg)|
28
-|2|[CREBBP](CREBBP)|6.00|[view](images/proteinpaint/CREBBP.svg)|[view](images/proteinpaint/CREBBP_NM_004380.svg)|
29
-|2|[CTCF](CTCF)|3.00|[view](images/proteinpaint/CTCF.svg)|[view](images/proteinpaint/CTCF_NM_006565.svg)|
30
-|2-a|[CXCR4](CXCR4)|2.08|[view](images/proteinpaint/CXCR4.svg)|[view](images/proteinpaint/CXCR4_NM_001008540.svg)|
31
-|2|[DNMT1](DNMT1)|2.08|[view](images/proteinpaint/DNMT1.svg)|[view](images/proteinpaint/DNMT1_NM_001130823.svg)|
32
-|2-a|[DTX1](DTX1)|5.54|[view](images/proteinpaint/DTX1.svg)|[view](images/proteinpaint/DTX1_NM_004416.svg)|
33
-|2-a|[EBF1](EBF1)|2.08|[view](images/proteinpaint/EBF1.svg)|[view](images/proteinpaint/EBF1_NM_024007.svg)|
34
-|2|[EHD1](EHD1)|1.39|[view](images/proteinpaint/EHD1.svg)|[view](images/proteinpaint/EHD1_NM_006795.svg)|
35
-|2|[EP300](EP300)|4.62|[view](images/proteinpaint/EP300.svg)|[view](images/proteinpaint/EP300_NM_001429.svg)|
36
-|2-a|[ETS1](ETS1)|7.62|[view](images/proteinpaint/ETS1.svg)|[view](images/proteinpaint/ETS1_NM_001143820.svg)|
37
-|2|[EZH2](EZH2)|3.46|[view](images/proteinpaint/EZH2.svg)|[view](images/proteinpaint/EZH2_NM_001203247.svg)|
38
-|2|[FAS](FAS)|2.08|[view](images/proteinpaint/FAS.svg)|[view](images/proteinpaint/FAS_NM_000043.svg)|
39
-|2|[FIP1L1](FIP1L1)|5.31|[view](images/proteinpaint/FIP1L1.svg)|[view](images/proteinpaint/FIP1L1_NM_030917.svg)|
40
-|2|[FZD3](FZD3)|0.23|[view](images/proteinpaint/FZD3.svg)|[view](images/proteinpaint/FZD3_NM_017412.svg)|
41
-|2|[GRB2](GRB2)|0.46|[view](images/proteinpaint/GRB2.svg)|[view](images/proteinpaint/GRB2_NM_002086.svg)|
42
-|2|[HIST1H1B](HIST1H1B)(H1-5)|4.62|[view](images/proteinpaint/HIST1H1B.svg)|[view](images/proteinpaint/HIST1H1B_NM_005322.svg)|
43
-|2|[HIST1H1C](HIST1H1C)(H1-2)|4.85|[view](images/proteinpaint/HIST1H1C.svg)|[view](images/proteinpaint/HIST1H1C_NM_005319.svg)|
44
-|2|[HIST1H1D](HIST1H1D)(H1-3)|3.23|[view](images/proteinpaint/HIST1H1D.svg)|[view](images/proteinpaint/HIST1H1D_NM_005320.svg)|
45
-|2|[HIST1H1E](HIST1H1E)(H1-4)|9.70|[view](images/proteinpaint/HIST1H1E.svg)|[view](images/proteinpaint/HIST1H1E_NM_005321.svg)|
46
-|2|[HIST1H2AG](HIST1H2AG)(H2AC11)|1.39|[view](images/proteinpaint/HIST1H2AG.svg)|[view](images/proteinpaint/HIST1H2AG_NM_021064.svg)|
47
-|2|[HIST1H2AM](HIST1H2AM)(H2AC17)|1.85|[view](images/proteinpaint/HIST1H2AM.svg)|[view](images/proteinpaint/HIST1H2AM_NM_003514.svg)|
48
-|2|[HIST1H2BK](HIST1H2BK)(H2BC12)|5.31|[view](images/proteinpaint/HIST1H2BK.svg)|[view](images/proteinpaint/HIST1H2BK_NM_080593.svg)|
49
-|2|[HIST1H3D](HIST1H3D)(H3C4)|2.31|[view](images/proteinpaint/HIST1H3D.svg)|[view](images/proteinpaint/HIST1H3D_NM_003530.svg)|
50
-|2|[HIST1H3H](HIST1H3H)(H3C10)|2.08|[view](images/proteinpaint/HIST1H3H.svg)|[view](images/proteinpaint/HIST1H3H_NM_003536.svg)|
51
-|2|[HIST1H3I](HIST1H3I)(H3C11)|0.46|[view](images/proteinpaint/HIST1H3I.svg)|[view](images/proteinpaint/HIST1H3I_NM_003533.svg)|
52
-|2|[HIST1H3J](HIST1H3J)(H3C12)|2.31|[view](images/proteinpaint/HIST1H3J.svg)|[view](images/proteinpaint/HIST1H3J_NM_003535.svg)|
53
-|2|[HIST1H4J](HIST1H4J)(H4C11)|0.46|[view](images/proteinpaint/HIST1H4J.svg)|[view](images/proteinpaint/HIST1H4J_NM_021968.svg)|
54
-|2|[HLA-A](HLA-A)|1.39|[view](images/proteinpaint/HLA-A.svg)|[view](images/proteinpaint/HLA-A_NM_002116.svg)|
55
-|2|[HLA-B](HLA-B)|3.46|[view](images/proteinpaint/HLA-B.svg)|[view](images/proteinpaint/HLA-B_NM_005514.svg)|
56
-|2|[HLA-DMB](HLA-DMB)|NA|[view](images/proteinpaint/HLA-DMB.svg)|[view](images/proteinpaint/HLA-DMB_NM_002118.svg)|
57
-|2|[HVCN1](HVCN1)|0.92|[view](images/proteinpaint/HVCN1.svg)|[view](images/proteinpaint/HVCN1_NM_001040107.svg)|
58
-|2-a|[IGLL5](IGLL5)|26.33|[view](images/proteinpaint/IGLL5.svg)|[view](images/proteinpaint/IGLL5_NM_001178126.svg)|
59
-|2-a|[IKZF3](IKZF3)|1.62|[view](images/proteinpaint/IKZF3.svg)|[view](images/proteinpaint/IKZF3_NM_012481.svg)|
60
-|2-a|[IRF8](IRF8)|2.31|[view](images/proteinpaint/IRF8.svg)|[view](images/proteinpaint/IRF8_NM_002163.svg)|
61
-|2|[KCNK10](KCNK10)|0.92|[view](images/proteinpaint/KCNK10.svg)|[view](images/proteinpaint/KCNK10_NM_021161.svg)|
62
-|2-a|[KLHL6](KLHL6)|3.93|[view](images/proteinpaint/KLHL6.svg)|[view](images/proteinpaint/KLHL6_NM_130446.svg)|
63
-|2-a|[LTB](LTB)|3.00|[view](images/proteinpaint/LTB.svg)|[view](images/proteinpaint/LTB_NM_002341.svg)|
64
-|2-a|[MCL1](MCL1)|1.85|[view](images/proteinpaint/MCL1.svg)|[view](images/proteinpaint/MCL1_NM_021960.svg)|
65
-|2-a|[MEF2B](MEF2B)|1.39|[view](images/proteinpaint/MEF2B.svg)|[view](images/proteinpaint/MEF2B_NM_001145785.svg)|
66
-|2-a|[MIR142](MIR142)(MIR142HG)|NA|[LOAD](https://morinlab.github.io/LLMPP/GAMBL/MIR142.html)|[LOAD](https://morinlab.github.io/LLMPP/GAMBL/MIR142_protein.html)|
67
-|2|[MME](MME)|1.85|[view](images/proteinpaint/MME.svg)|[view](images/proteinpaint/MME_NM_000902.svg)|
68
-|2|[MTOR](MTOR)|4.62|[view](images/proteinpaint/MTOR.svg)|[view](images/proteinpaint/MTOR_NM_004958.svg)|
69
-|2|[MYD88](MYD88)|0.46|[view](images/proteinpaint/MYD88.svg)|[view](images/proteinpaint/MYD88_NM_002468.svg)|
70
-|2-a|[MYO1E](MYO1E)|2.08|[view](images/proteinpaint/MYO1E.svg)|[view](images/proteinpaint/MYO1E_NM_004998.svg)|
71
-|2|[NFKBIA](NFKBIA)|1.39|[view](images/proteinpaint/NFKBIA.svg)|[view](images/proteinpaint/NFKBIA_NM_020529.svg)|
72
-|2|[NOTCH2](NOTCH2)|1.15|[view](images/proteinpaint/NOTCH2.svg)|[view](images/proteinpaint/NOTCH2_NM_024408.svg)|
73
-|2-a|[OSBPL10](OSBPL10)|2.08|[view](images/proteinpaint/OSBPL10.svg)|[view](images/proteinpaint/OSBPL10_NM_017784.svg)|
74
-|2|[PABPC4L](PABPC4L)|1.62|[view](images/proteinpaint/PABPC4L.svg)|[view](images/proteinpaint/PABPC4L_NM_001114734.svg)|
75
-|2|[PCDHA11](PCDHA11)|1.39|[view](images/proteinpaint/PCDHA11.svg)|[view](images/proteinpaint/PCDHA11_NM_018902.svg)|
76
-|2|[PDZRN3](PDZRN3)|3.46|[view](images/proteinpaint/PDZRN3.svg)|[view](images/proteinpaint/PDZRN3_NM_015009.svg)|
77
-|2|[PIK3R1](PIK3R1)|3.00|[view](images/proteinpaint/PIK3R1.svg)|[view](images/proteinpaint/PIK3R1_NM_181523.svg)|
78
-|2|[PLCG2](PLCG2)|3.00|[view](images/proteinpaint/PLCG2.svg)|[view](images/proteinpaint/PLCG2_NM_002661.svg)|
79
-|2|[PMAIP1](PMAIP1)|3.23|[view](images/proteinpaint/PMAIP1.svg)|[view](images/proteinpaint/PMAIP1_NM_021127.svg)|
80
-|2|[PRDM1](PRDM1)|2.31|[view](images/proteinpaint/PRDM1.svg)|[view](images/proteinpaint/PRDM1_NM_001198.svg)|
81
-|2|[PRKCD](PRKCD)|2.31|[view](images/proteinpaint/PRKCD.svg)|[view](images/proteinpaint/PRKCD_NM_006254.svg)|
82
-|2|[PXDNL](PXDNL)|4.62|[view](images/proteinpaint/PXDNL.svg)|[view](images/proteinpaint/PXDNL_NM_144651.svg)|
83
-|2|[RAC2](RAC2)|0.69|[view](images/proteinpaint/RAC2.svg)|[view](images/proteinpaint/RAC2_NM_002872.svg)|
84
-|2-a|[RNF144B](RNF144B)|0.23|[view](images/proteinpaint/RNF144B.svg)|[view](images/proteinpaint/RNF144B_NM_182757.svg)|
85
-|2|[RPL22](RPL22)|2.31|[view](images/proteinpaint/RPL22.svg)|[view](images/proteinpaint/RPL22_NM_000983.svg)|
86
-|2-a|[S1PR2](S1PR2)|1.15|[view](images/proteinpaint/S1PR2.svg)|[view](images/proteinpaint/S1PR2_NM_004230.svg)|
87
-|2|[SEPT10](SEPT10)(SEPTIN10)|0.92|[view](images/proteinpaint/SEPT10.svg)|[view](images/proteinpaint/SEPT10_NM_144710.svg)|
88
-|2-a|[SGK1](SGK1)|2.08|[view](images/proteinpaint/SGK1.svg)|[view](images/proteinpaint/SGK1_NM_005627.svg)|
89
-|2|[SNTB2](SNTB2)|0.69|[view](images/proteinpaint/SNTB2.svg)|[view](images/proteinpaint/SNTB2_NM_006750.svg)|
90
-|2-a|[SOCS1](SOCS1)|1.85|[view](images/proteinpaint/SOCS1.svg)|[view](images/proteinpaint/SOCS1_NM_003745.svg)|
91
-|2|[SP3](SP3)|3.00|[view](images/proteinpaint/SP3.svg)|[view](images/proteinpaint/SP3_NM_003111.svg)|
92
-|2|[STAT3](STAT3)|0.92|[view](images/proteinpaint/STAT3.svg)|[view](images/proteinpaint/STAT3_NM_139276.svg)|
93
-|2|[STAT6](STAT6)|1.62|[view](images/proteinpaint/STAT6.svg)|[view](images/proteinpaint/STAT6_NM_003153.svg)|
94
-|2|[SYNCRIP](SYNCRIP)|3.00|[view](images/proteinpaint/SYNCRIP.svg)|[view](images/proteinpaint/SYNCRIP_NM_006372.svg)|
95
-|2|[TBL1XR1](TBL1XR1)|6.00|[view](images/proteinpaint/TBL1XR1.svg)|[view](images/proteinpaint/TBL1XR1_NM_024665.svg)|
96
-|2|[TET2](TET2)|5.31|[view](images/proteinpaint/TET2.svg)|[view](images/proteinpaint/TET2_NM_001127208.svg)|
97
-|2|[TMEM30A](TMEM30A)|1.85|[view](images/proteinpaint/TMEM30A.svg)|[view](images/proteinpaint/TMEM30A_NM_018247.svg)|
98
-|2-a|[TMSB4X](TMSB4X)|0.69|[view](images/proteinpaint/TMSB4X.svg)|[view](images/proteinpaint/TMSB4X_NM_021109.svg)|
99
-|2|[TNFAIP3](TNFAIP3)|1.39|[view](images/proteinpaint/TNFAIP3.svg)|[view](images/proteinpaint/TNFAIP3_NM_006290.svg)|
100
-|2|[TNFRSF14](TNFRSF14)|1.39|[view](images/proteinpaint/TNFRSF14.svg)|[view](images/proteinpaint/TNFRSF14_NM_003820.svg)|
101
-|2|[TOX](TOX)|2.08|[view](images/proteinpaint/TOX.svg)|[view](images/proteinpaint/TOX_NM_014729.svg)|
102
-|2|[UBE2A](UBE2A)|0.92|[view](images/proteinpaint/UBE2A.svg)|[view](images/proteinpaint/UBE2A_NM_003336.svg)|
103
-|2|[WDR7](WDR7)|2.08|[view](images/proteinpaint/WDR7.svg)|[view](images/proteinpaint/WDR7_NM_015285.svg)|
104
-|2|[WNK2](WNK2)|3.23|[view](images/proteinpaint/WNK2.svg)|[view](images/proteinpaint/WNK2_NM_006648.svg)|
105
-|2-a|[ZFP36L1](ZFP36L1)|2.08|[view](images/proteinpaint/ZFP36L1.svg)|[view](images/proteinpaint/ZFP36L1_NM_004926.svg)|
106
-|2|[ARHGEF1](ARHGEF1)|3.93|[view](images/proteinpaint/ARHGEF1.svg)|[view](images/proteinpaint/ARHGEF1_NM_199002.svg)|
107
-|2|[ACE](ACE)|4.39|[view](images/proteinpaint/ACE.svg)|[view](images/proteinpaint/ACE_NM_000789.svg)|
108
-|2|[ACAD9](ACAD9)|1.85|[view](images/proteinpaint/ACAD9.svg)|[view](images/proteinpaint/ACAD9_NM_014049.svg)|
109
-|2|[ATP2C2](ATP2C2)|3.70|[view](images/proteinpaint/ATP2C2.svg)|[view](images/proteinpaint/ATP2C2_NM_014861.svg)|
110
-|2|[BRAF](BRAF)|2.77|[view](images/proteinpaint/BRAF.svg)|[view](images/proteinpaint/BRAF_NM_004333.svg)|
111
-|2|[BRD4](BRD4)|2.08|[view](images/proteinpaint/BRD4.svg)|[view](images/proteinpaint/BRD4_NM_058243.svg)|
112
-|2|[CARD4](CARD4)(NOD1)|NA|[view](images/proteinpaint/CARD4.svg)|[LOAD](https://morinlab.github.io/LLMPP/GAMBL/CARD4_protein.html)|
113
-|2|[CAD](CAD)|3.93|[view](images/proteinpaint/CAD.svg)|[view](images/proteinpaint/CAD_NM_004341.svg)|
114
-|2|[C6orf27](C6orf27)(VWA7)|NA|[view](images/proteinpaint/C6orf27.svg)|[view](images/proteinpaint/VWA7_NM_025258.svg)|
115
-|2|[CCT6B](CCT6B)|1.15|[view](images/proteinpaint/CCT6B.svg)|[view](images/proteinpaint/CCT6B_NM_006584.svg)|
116
-|2|[CDC73](CDC73)|2.54|[view](images/proteinpaint/CDC73.svg)|[view](images/proteinpaint/CDC73_NM_024529.svg)|
117
-|2|[CDH17](CDH17)|1.39|[view](images/proteinpaint/CDH17.svg)|[view](images/proteinpaint/CDH17_NM_004063.svg)|
118
-|2|[COL4A2](COL4A2)|4.16|[view](images/proteinpaint/COL4A2.svg)|[view](images/proteinpaint/COL4A2_NM_001846.svg)|
119
-|2|[CYB5D1](CYB5D1)|0.23|[view](images/proteinpaint/CYB5D1.svg)|[view](images/proteinpaint/CYB5D1_NM_144607.svg)|
120
-|2|[CYP4F22](CYP4F22)|1.39|[view](images/proteinpaint/CYP4F22.svg)|[view](images/proteinpaint/CYP4F22_NM_173483.svg)|
121
-|2|[DLGAP1](DLGAP1)|1.85|[view](images/proteinpaint/DLGAP1.svg)|[view](images/proteinpaint/DLGAP1_NM_004746.svg)|
122
-|2|[EML2](EML2)|1.62|[view](images/proteinpaint/EML2.svg)|[view](images/proteinpaint/EML2_NM_012155.svg)|
123
-|2|[EPHB2](EPHB2)|1.85|[view](images/proteinpaint/EPHB2.svg)|[view](images/proteinpaint/EPHB2_NM_017449.svg)|
124
-|2|[EIF2C4](EIF2C4)(AGO4)|NA|[view](images/proteinpaint/EIF2C4.svg)|[view](images/proteinpaint/AGO4_NM_017629.svg)|
125
-|2|[ENTPD3](ENTPD3)|1.39|[view](images/proteinpaint/ENTPD3.svg)|[view](images/proteinpaint/ENTPD3_NM_001248.svg)|
126
-|2|[FAM129B](FAM129B)(NIBAN2)|1.39|[view](images/proteinpaint/FAM129B.svg)|[LOAD](https://morinlab.github.io/LLMPP/GAMBL/FAM129B_protein.html)|
127
-|2|[FTCD](FTCD)|3.23|[view](images/proteinpaint/FTCD.svg)|[view](images/proteinpaint/FTCD_NM_206965.svg)|
128
-|2|[FGFR3](FGFR3)|1.62|[view](images/proteinpaint/FGFR3.svg)|[view](images/proteinpaint/FGFR3_NM_000142.svg)|
129
-|2|[GGTLA4](GGTLA4)(GGTLC1)|NA|[view](images/proteinpaint/GGTLA4.svg)|[LOAD](https://morinlab.github.io/LLMPP/GAMBL/GGTLA4_protein.html)|
130
-|2|[GRIK5](GRIK5)|0.92|[view](images/proteinpaint/GRIK5.svg)|[view](images/proteinpaint/GRIK5_NM_002088.svg)|
131
-|2|[ICK](ICK)(CILK1)|0.69|[view](images/proteinpaint/ICK.svg)|[LOAD](https://morinlab.github.io/LLMPP/GAMBL/ICK_protein.html)|
132
-|2|[ITPR3](ITPR3)|4.39|[view](images/proteinpaint/ITPR3.svg)|[view](images/proteinpaint/ITPR3_NM_002224.svg)|
133
-|2|[KIFC3](KIFC3)|1.62|[view](images/proteinpaint/KIFC3.svg)|[view](images/proteinpaint/KIFC3_NM_005550.svg)|
134
-|2|[MAP3K6](MAP3K6)|2.54|[view](images/proteinpaint/MAP3K6.svg)|[view](images/proteinpaint/MAP3K6_NM_004672.svg)|
135
-|2|[MYH10](MYH10)|2.08|[view](images/proteinpaint/MYH10.svg)|[view](images/proteinpaint/MYH10_NM_005964.svg)|
136
-|2|[NBEAL1](NBEAL1)|3.46|[view](images/proteinpaint/NBEAL1.svg)|[view](images/proteinpaint/NBEAL1_NM_001114132.svg)|
137
-|2|[NOTCH1](NOTCH1)|4.16|[view](images/proteinpaint/NOTCH1.svg)|[view](images/proteinpaint/NOTCH1_NM_017617.svg)|
138
-|2|[NRXN2](NRXN2)|2.77|[view](images/proteinpaint/NRXN2.svg)|[view](images/proteinpaint/NRXN2_NM_015080.svg)|
139
-|2|[PC](PC)|2.54|[view](images/proteinpaint/PC.svg)|[view](images/proteinpaint/PC_NM_000920.svg)|
140
-|2|[P2RY2](P2RY2)|1.15|[view](images/proteinpaint/P2RY2.svg)|[view](images/proteinpaint/P2RY2_NM_176072.svg)|
141
-|2|[POLRMT](POLRMT)|1.62|[view](images/proteinpaint/POLRMT.svg)|[view](images/proteinpaint/POLRMT_NM_005035.svg)|
142
-|2|[POR](POR)|2.54|[view](images/proteinpaint/POR.svg)|[view](images/proteinpaint/POR_NM_001382657.svg)|
143
-|2|[PRSS22](PRSS22)|1.39|[view](images/proteinpaint/PRSS22.svg)|[view](images/proteinpaint/PRSS22_NM_022119.svg)|
144
-|2|[PTPRN](PTPRN)|0.69|[view](images/proteinpaint/PTPRN.svg)|[view](images/proteinpaint/PTPRN_NM_002846.svg)|
145
-|2|[RANBP6](RANBP6)|1.85|[view](images/proteinpaint/RANBP6.svg)|[view](images/proteinpaint/RANBP6_NM_012416.svg)|
146
-|2|[RBP3](RBP3)|0.69|[view](images/proteinpaint/RBP3.svg)|[view](images/proteinpaint/RBP3_NM_002900.svg)|
147
-|2|[RET](RET)|2.31|[view](images/proteinpaint/RET.svg)|[view](images/proteinpaint/RET_NM_020630.svg)|
148
-|2|[SALL3](SALL3)|4.16|[view](images/proteinpaint/SALL3.svg)|[view](images/proteinpaint/SALL3_NM_171999.svg)|
149
-|2|[SAPS2](SAPS2)(PPP6R2)|NA|[view](images/proteinpaint/SAPS2.svg)|[view](images/proteinpaint/PPP6R2_NM_014678.svg)|
150
-|2|[SBF1](SBF1)|4.85|[view](images/proteinpaint/SBF1.svg)|[view](images/proteinpaint/SBF1_NM_002972.svg)|
151
-|2|[SLC29A2](SLC29A2)|0.46|[view](images/proteinpaint/SLC29A2.svg)|[view](images/proteinpaint/SLC29A2_NM_001532.svg)|
152
-|2|[SF3B1](SF3B1)|3.00|[view](images/proteinpaint/SF3B1.svg)|[view](images/proteinpaint/SF3B1_NM_012433.svg)|
153
-|2|[SHANK1](SHANK1)|2.77|[view](images/proteinpaint/SHANK1.svg)|[view](images/proteinpaint/SHANK1_NM_016148.svg)|
154
-|2|[SYNGAP1](SYNGAP1)|1.39|[view](images/proteinpaint/SYNGAP1.svg)|[view](images/proteinpaint/SYNGAP1_NM_006772.svg)|
155
-|2|[TBC1D9B](TBC1D9B)|1.85|[view](images/proteinpaint/TBC1D9B.svg)|[view](images/proteinpaint/TBC1D9B_NM_198868.svg)|
156
-|2|[TIGD6](TIGD6)|1.15|[view](images/proteinpaint/TIGD6.svg)|[view](images/proteinpaint/TIGD6_NM_030953.svg)|
157
-|2|[TPST2](TPST2)|0.92|[view](images/proteinpaint/TPST2.svg)|[view](images/proteinpaint/TPST2_NM_001008566.svg)|
158
-|2|[ZNF229](ZNF229)|0.69|[view](images/proteinpaint/ZNF229.svg)|[view](images/proteinpaint/ZNF229_NM_014518.svg)|
159
-|2|[ADAMTS5](ADAMTS5)|2.77|[view](images/proteinpaint/ADAMTS5.svg)|[view](images/proteinpaint/ADAMTS5_NM_007038.svg)|
160
-|2|[ADNP](ADNP)|1.15|[view](images/proteinpaint/ADNP.svg)|[view](images/proteinpaint/ADNP_NM_015339.svg)|
161
-|2|[AGO4](AGO4)(EIF2C4)|1.15|[view](images/proteinpaint/AGO4.svg)|[view](images/proteinpaint/AGO4_NM_017629.svg)|
162
-|2-a|[BTG1](BTG1)|0.46|[view](images/proteinpaint/BTG1.svg)|[view](images/proteinpaint/BTG1_NM_001731.svg)|
163
-|2|[CD79A](CD79A)|0.23|[view](images/proteinpaint/CD79A.svg)|[view](images/proteinpaint/CD79A_NM_001783.svg)|
164
-|2|[CHD4](CHD4)|3.93|[view](images/proteinpaint/CHD4.svg)|[view](images/proteinpaint/CHD4_NM_001273.svg)|
165
-|2|[CPXM2](CPXM2)|1.85|[view](images/proteinpaint/CPXM2.svg)|[view](images/proteinpaint/CPXM2_NM_198148.svg)|
166
-|2|[E2F2](E2F2)|1.62|[view](images/proteinpaint/E2F2.svg)|[view](images/proteinpaint/E2F2_NM_004091.svg)|
167
-|2|[EDNRB](EDNRB)|1.62|[view](images/proteinpaint/EDNRB.svg)|[view](images/proteinpaint/EDNRB_NM_000115.svg)|
168
-|2|[ERAP1](ERAP1)|2.08|[view](images/proteinpaint/ERAP1.svg)|[view](images/proteinpaint/ERAP1_NM_016442.svg)|
169
-|2|[EXOSC6](EXOSC6)|0.46|[view](images/proteinpaint/EXOSC6.svg)|[view](images/proteinpaint/EXOSC6_NM_058219.svg)|
170
-|2|[FLYWCH1](FLYWCH1)|1.39|[view](images/proteinpaint/FLYWCH1.svg)|[view](images/proteinpaint/FLYWCH1_NM_032296.svg)|
171
-|2|[GTSE1](GTSE1)|2.08|[view](images/proteinpaint/GTSE1.svg)|[view](images/proteinpaint/GTSE1_NM_016426.svg)|
172
-|2|[HLA-DQB1](HLA-DQB1)|NA|[view](images/proteinpaint/HLA-DQB1.svg)|[view](images/proteinpaint/HLA-DQB1_NM_002123.svg)|
173
-|2|[KLHL26](KLHL26)|0.46|[view](images/proteinpaint/KLHL26.svg)|[view](images/proteinpaint/KLHL26_NM_018316.svg)|
174
-|2|[MKI67](MKI67)|6.00|[view](images/proteinpaint/MKI67.svg)|[view](images/proteinpaint/MKI67_NM_002417.svg)|
175
-|2|[MYO18A](MYO18A)|4.62|[view](images/proteinpaint/MYO18A.svg)|[view](images/proteinpaint/MYO18A_NM_078471.svg)|
176
-|2|[NCOR2](NCOR2)|6.24|[view](images/proteinpaint/NCOR2.svg)|[view](images/proteinpaint/NCOR2_NM_006312.svg)|
177
-|2|[NOA1](NOA1)|2.31|[view](images/proteinpaint/NOA1.svg)|[view](images/proteinpaint/NOA1_NM_032313.svg)|
178
-|2|[PDCD11](PDCD11)|3.46|[view](images/proteinpaint/PDCD11.svg)|[view](images/proteinpaint/PDCD11_NM_014976.svg)|
179
-|2-a|[PIM1](PIM1)|2.31|[view](images/proteinpaint/PIM1.svg)|[view](images/proteinpaint/PIM1_NM_002648.svg)|
180
-|2|[PPP6R2](PPP6R2)(SAPS2)|2.08|[view](images/proteinpaint/PPP6R2.svg)|[view](images/proteinpaint/PPP6R2_NM_014678.svg)|
181
-|2|[PREX1](PREX1)|2.08|[view](images/proteinpaint/PREX1.svg)|[view](images/proteinpaint/PREX1_NM_020820.svg)|
182
-|2|[REV3L](REV3L)|4.85|[view](images/proteinpaint/REV3L.svg)|[view](images/proteinpaint/REV3L_NM_002912.svg)|
183
-|2|[RPL10](RPL10)|13.63|[view](images/proteinpaint/RPL10.svg)|[view](images/proteinpaint/RPL10_NM_006013.svg)|
184
-|2|[SAL3](SAL3)(IPO5)|NA|[view](images/proteinpaint/SAL3.svg)|[LOAD](https://morinlab.github.io/LLMPP/GAMBL/SAL3_protein.html)|
185
-|2|[TOP2A](TOP2A)|1.62|[view](images/proteinpaint/TOP2A.svg)|[view](images/proteinpaint/TOP2A_NM_001067.svg)|
186
-|2|[TTN](TTN)|28.64|[view](images/proteinpaint/TTN.svg)|[view](images/proteinpaint/TTN_NM_133378.svg)|
187
-|2|[VWA7](VWA7)(C6orf27)|1.85|[view](images/proteinpaint/VWA7.svg)|[view](images/proteinpaint/VWA7_NM_025258.svg)|
188
-|2|[WDR90](WDR90)|1.62|[view](images/proteinpaint/WDR90.svg)|[view](images/proteinpaint/WDR90_NM_145294.svg)|
189
-|2|[WHAMM](WHAMM)|1.15|[view](images/proteinpaint/WHAMM.svg)|[view](images/proteinpaint/WHAMM_NM_001080435.svg)|
190
-|2|[YY1AP1](YY1AP1)|1.85|[view](images/proteinpaint/YY1AP1.svg)|[view](images/proteinpaint/YY1AP1_NM_139118.svg)|
191
-|2|[ZAN](ZAN)|5.77|[view](images/proteinpaint/ZAN.svg)|[view](images/proteinpaint/ZAN_NM_003386.svg)|
192
-|2|[ZBTB7A](ZBTB7A)|3.00|[view](images/proteinpaint/ZBTB7A.svg)|[view](images/proteinpaint/ZBTB7A_NM_015898.svg)|
193
-|2|[ZNF85](ZNF85)|0.69|[view](images/proteinpaint/ZNF85.svg)|[view](images/proteinpaint/ZNF85_NM_003429.svg)|
194
-|2|[KMT2C](KMT2C)|6.47|[view](images/proteinpaint/KMT2C.svg)|[view](images/proteinpaint/KMT2C_NM_170606.svg)|
tier2_dlbcl.md
... ...
@@ -1,179 +0,0 @@
1
-# DLBCL genes
2
-## Origins of DLBCL genes
3
-![sankey](DLBCL_sankey-1.svg)
4
-## Tier 2 DLBCL genes
5
-|Category|Gene|DLBCL mutation frequency |gene|protein|
6
-| :---: | :----: | :---: | :---: | :--: |
7
-|2|[ABI3BP](ABI3BP)|3.44|[view](images/proteinpaint/ABI3BP.svg)|[view](images/proteinpaint/ABI3BP_NM_015429.svg)|
8
-|2|[ADAMTS1](ADAMTS1)|1.91|[view](images/proteinpaint/ADAMTS1.svg)|[view](images/proteinpaint/ADAMTS1_NM_006988.svg)|
9
-|2|[ANKRD17](ANKRD17)|2.68|[view](images/proteinpaint/ANKRD17.svg)|[view](images/proteinpaint/ANKRD17_NM_032217.svg)|
10
-|2|[ANKRD12](ANKRD12)|2.29|[view](images/proteinpaint/ANKRD12.svg)|[view](images/proteinpaint/ANKRD12_NM_015208.svg)|
11
-|2-a|[AICDA](AICDA)|0.38|[view](images/proteinpaint/AICDA.svg)|[view](images/proteinpaint/AICDA_NM_020661.svg)|
12
-|2|[ARID1B](ARID1B)|5.16|[view](images/proteinpaint/ARID1B.svg)|[view](images/proteinpaint/ARID1B_NM_017519.svg)|
13
-|2|[ARID5B](ARID5B)|3.25|[view](images/proteinpaint/ARID5B.svg)|[view](images/proteinpaint/ARID5B_NM_032199.svg)|
14
-|2|[ATR](ATR)|2.68|[view](images/proteinpaint/ATR.svg)|[view](images/proteinpaint/ATR_NM_001184.svg)|
15
-|2-a|[BIRC3](BIRC3)|1.53|[view](images/proteinpaint/BIRC3.svg)|[view](images/proteinpaint/BIRC3_NM_001165.svg)|
16
-|2-a|[BLK](BLK)|0.57|[view](images/proteinpaint/BLK.svg)|[view](images/proteinpaint/BLK_NM_001715.svg)|
17
-|2|[BRINP3](BRINP3)|2.68|[view](images/proteinpaint/BRINP3.svg)|[view](images/proteinpaint/BRINP3_NM_199051.svg)|
18
-|2|[BTBD3](BTBD3)|0.57|[view](images/proteinpaint/BTBD3.svg)|[view](images/proteinpaint/BTBD3_NM_014962.svg)|
19
-|2|[CADPS2](CADPS2)|3.63|[view](images/proteinpaint/CADPS2.svg)|[view](images/proteinpaint/CADPS2_NM_017954.svg)|
20
-|2|[CBLB](CBLB)|1.72|[view](images/proteinpaint/CBLB.svg)|[view](images/proteinpaint/CBLB_NM_170662.svg)|
21
-|2|[CCL4](CCL4)|0.19|[view](images/proteinpaint/CCL4.svg)|[view](images/proteinpaint/CCL4_NM_002984.svg)|
22
-|2|[CD22](CD22)|1.15|[view](images/proteinpaint/CD22.svg)|[view](images/proteinpaint/CD22_NM_001771.svg)|
23
-|2-a|[CD44](CD44)|0.19|[view](images/proteinpaint/CD44.svg)|[view](images/proteinpaint/CD44_NM_000610.svg)|
24
-|2-a|[CD74](CD74)|2.29|[view](images/proteinpaint/CD74.svg)|[view](images/proteinpaint/CD74_NM_001025159.svg)|
25
-|2|[CDC73](CDC73)|0.57|[view](images/proteinpaint/CDC73.svg)|[view](images/proteinpaint/CDC73_NM_024529.svg)|
26
-|2|[CHD1](CHD1)|2.10|[view](images/proteinpaint/CHD1.svg)|[view](images/proteinpaint/CHD1_NM_001270.svg)|
27
-|2|[CHD8](CHD8)|1.91|[view](images/proteinpaint/CHD8.svg)|[view](images/proteinpaint/CHD8_NM_001170629.svg)|
28
-|2|[CDH9](CDH9)|3.63|[view](images/proteinpaint/CDH9.svg)|[view](images/proteinpaint/CDH9_NM_016279.svg)|
29
-|2|[CNOT2](CNOT2)|1.34|[view](images/proteinpaint/CNOT2.svg)|[view](images/proteinpaint/CNOT2_NM_014515.svg)|
30
-|2|[CNTNAP5](CNTNAP5)|5.16|[view](images/proteinpaint/CNTNAP5.svg)|[view](images/proteinpaint/CNTNAP5_NM_130773.svg)|
31
-|2|[CHST2](CHST2)|1.34|[view](images/proteinpaint/CHST2.svg)|[view](images/proteinpaint/CHST2_NM_004267.svg)|
32
-|2|[COQ7](COQ7)|0.38|[view](images/proteinpaint/COQ7.svg)|[view](images/proteinpaint/COQ7_NM_016138.svg)|
33
-|2|[CRIP1](CRIP1)|0.19|[view](images/proteinpaint/CRIP1.svg)|[view](images/proteinpaint/CRIP1_NM_001311.svg)|
34
-|2|[DCAF6](DCAF6)|1.15|[view](images/proteinpaint/DCAF6.svg)|[view](images/proteinpaint/DCAF6_NM_018442.svg)|
35
-|2|[DDX10](DDX10)|0.57|[view](images/proteinpaint/DDX10.svg)|[view](images/proteinpaint/DDX10_NM_004398.svg)|
36
-|2|[DHX16](DHX16)|1.91|[view](images/proteinpaint/DHX16.svg)|[view](images/proteinpaint/DHX16_NM_003587.svg)|
37
-|2|[DICER1](DICER1)|1.34|[view](images/proteinpaint/DICER1.svg)|[view](images/proteinpaint/DICER1_NM_177438.svg)|
38
-|2|[DNAH5](DNAH5)|9.18|[view](images/proteinpaint/DNAH5.svg)|[view](images/proteinpaint/DNAH5_NM_001369.svg)|
39
-|2|[DNMT3A](DNMT3A)|0.76|[view](images/proteinpaint/DNMT3A.svg)|[view](images/proteinpaint/DNMT3A_NM_175629.svg)|
40
-|2|[DNM2](DNM2)|2.29|[view](images/proteinpaint/DNM2.svg)|[view](images/proteinpaint/DNM2_NM_001005360.svg)|
41
-|2|[DOCK1](DOCK1)|3.82|[view](images/proteinpaint/DOCK1.svg)|[view](images/proteinpaint/DOCK1_NM_001380.svg)|
42
-|2|[DSG4](DSG4)|3.06|[view](images/proteinpaint/DSG4.svg)|[view](images/proteinpaint/DSG4_NM_001134453.svg)|
43
-|2|[EIF2AK3](EIF2AK3)|3.44|[view](images/proteinpaint/EIF2AK3.svg)|[view](images/proteinpaint/EIF2AK3_NM_004836.svg)|
44
-|2-a|[EZR](EZR)|1.34|[view](images/proteinpaint/EZR.svg)|[view](images/proteinpaint/EZR_NM_003379.svg)|
45
-|2|[FAT4](FAT4)|12.81|[view](images/proteinpaint/FAT4.svg)|[view](images/proteinpaint/FAT4_NM_024582.svg)|
46
-|2|[FAM38B](FAM38B)|0.00|[LOAD](https://morinlab.github.io/LLMPP/GAMBL/FAM38B.html)|[LOAD](https://morinlab.github.io/LLMPP/GAMBL/FAM38B_protein.html)|
47
-|2-a|[FAM102A](FAM102A)|2.49|[view](images/proteinpaint/FAM102A.svg)|[view](images/proteinpaint/FAM102A_NM_001035254.svg)|
48
-|2-a|[FANK1](FANK1)|0.19|[view](images/proteinpaint/FANK1.svg)|[view](images/proteinpaint/FANK1_NM_145235.svg)|
49
-|2-a|[FCRL3](FCRL3)|2.49|[view](images/proteinpaint/FCRL3.svg)|[view](images/proteinpaint/FCRL3_NM_052939.svg)|
50
-|2-a|[FNBP1](FNBP1)|0.96|[view](images/proteinpaint/FNBP1.svg)|[view](images/proteinpaint/FNBP1_NM_015033.svg)|
51
-|2|[FNDC1](FNDC1)|2.10|[view](images/proteinpaint/FNDC1.svg)|[view](images/proteinpaint/FNDC1_NM_032532.svg)|
52
-|2-a|[FOXP1](FOXP1)|0.57|[view](images/proteinpaint/FOXP1.svg)|[view](images/proteinpaint/FOXP1_NM_001349338.svg)|
53
-|2|[FUBP1](FUBP1)|2.10|[view](images/proteinpaint/FUBP1.svg)|[view](images/proteinpaint/FUBP1_NM_003902.svg)|
54
-|2|[FUT5](FUT5)|0.38|[view](images/proteinpaint/FUT5.svg)|[view](images/proteinpaint/FUT5_NM_002034.svg)|
55
-|2|[GABRA2](GABRA2)|1.15|[view](images/proteinpaint/GABRA2.svg)|[view](images/proteinpaint/GABRA2_NM_000807.svg)|
56
-|2|[GAK](GAK)|1.91|[view](images/proteinpaint/GAK.svg)|[view](images/proteinpaint/GAK_NM_005255.svg)|
57
-|2|[GNAS](GNAS)|2.29|[view](images/proteinpaint/GNAS.svg)|[view](images/proteinpaint/GNAS_NM_000516.svg)|
58
-|2|[GOLGA5](GOLGA5)|0.57|[view](images/proteinpaint/GOLGA5.svg)|[view](images/proteinpaint/GOLGA5_NM_005113.svg)|
59
-|2|[GPC5](GPC5)|1.34|[view](images/proteinpaint/GPC5.svg)|[view](images/proteinpaint/GPC5_NM_004466.svg)|
60
-|2|[GSG2](GSG2)(HASPIN)|0.96|[view](images/proteinpaint/GSG2.svg)|[view](images/proteinpaint/GSG2_NM_031965.svg)|
61
-|2|[HDAC7](HDAC7)|2.29|[view](images/proteinpaint/HDAC7.svg)|[view](images/proteinpaint/HDAC7_NM_015401.svg)|
62
-|2|[HIST1H2AG](HIST1H2AG)(H2AC11)|3.44|[view](images/proteinpaint/HIST1H2AG.svg)|[view](images/proteinpaint/HIST1H2AG_NM_021064.svg)|
63
-|2|[HNF1B](HNF1B)|0.19|[view](images/proteinpaint/HNF1B.svg)|[view](images/proteinpaint/HNF1B_NM_000458.svg)|
64
-|2|[HRAS](HRAS)|0.00|[view](images/proteinpaint/HRAS.svg)|[view](images/proteinpaint/HRAS_NM_005343.svg)|
65
-|2-a|[ID3](ID3)|1.53|[view](images/proteinpaint/ID3.svg)|[view](images/proteinpaint/ID3_NM_002167.svg)|
66
-|2|[IER2](IER2)|0.38|[LOAD](https://morinlab.github.io/LLMPP/GAMBL/IER2.html)|[view](images/proteinpaint/IER2_NM_004907.svg)|
67
-|2-a|[IGLL5](IGLL5)|41.49|[view](images/proteinpaint/IGLL5.svg)|[view](images/proteinpaint/IGLL5_NM_001178126.svg)|
68
-|2|[IKBKB](IKBKB)|0.57|[view](images/proteinpaint/IKBKB.svg)|[view](images/proteinpaint/IKBKB_NM_001556.svg)|
69
-|2|[IKBKE](IKBKE)|0.76|[view](images/proteinpaint/IKBKE.svg)|[view](images/proteinpaint/IKBKE_NM_014002.svg)|
70
-|2|[IL6](IL6)|0.38|[view](images/proteinpaint/IL6.svg)|[view](images/proteinpaint/IL6_NM_000600.svg)|
71
-|2|[IFNGR1](IFNGR1)|0.38|[view](images/proteinpaint/IFNGR1.svg)|[view](images/proteinpaint/IFNGR1_NM_000416.svg)|
72
-|2|[INO80](INO80)|3.82|[view](images/proteinpaint/INO80.svg)|[view](images/proteinpaint/INO80_NM_017553.svg)|
73
-|2-a|[IRF1](IRF1)|2.29|[view](images/proteinpaint/IRF1.svg)|[view](images/proteinpaint/IRF1_NM_002198.svg)|
74
-|2|[JAK1](JAK1)|2.49|[view](images/proteinpaint/JAK1.svg)|[view](images/proteinpaint/JAK1_NM_002227.svg)|
75
-|2|[JAK3](JAK3)|1.34|[view](images/proteinpaint/JAK3.svg)|[view](images/proteinpaint/JAK3_NM_000215.svg)|
76
-|2|[KCMF1](KCMF1)|0.96|[view](images/proteinpaint/KCMF1.svg)|[view](images/proteinpaint/KCMF1_NM_020122.svg)|
77
-|2-a|[KLHL21](KLHL21)|3.82|[view](images/proteinpaint/KLHL21.svg)|[view](images/proteinpaint/KLHL21_NM_014851.svg)|
78
-|2|[LAMA5](LAMA5)|3.44|[view](images/proteinpaint/LAMA5.svg)|[view](images/proteinpaint/LAMA5_NM_005560.svg)|
79
-|2-a|[LAPTM5](LAPTM5)|3.06|[view](images/proteinpaint/LAPTM5.svg)|[view](images/proteinpaint/LAPTM5_NM_006762.svg)|
80
-|2|[LRP12](LRP12)|2.49|[view](images/proteinpaint/LRP12.svg)|[view](images/proteinpaint/LRP12_NM_013437.svg)|
81
-|2|[LRRN3](LRRN3)|8.22|[view](images/proteinpaint/LRRN3.svg)|[view](images/proteinpaint/LRRN3_NM_001099660.svg)|
82
-|2|[LIN54](LIN54)|0.57|[view](images/proteinpaint/LIN54.svg)|[view](images/proteinpaint/LIN54_NM_194282.svg)|
83
-|2-a|[LPP](LPP)|1.15|[view](images/proteinpaint/LPP.svg)|[view](images/proteinpaint/LPP_NM_005578.svg)|
84
-|2|[IRAG2](IRAG2)(LRMP)|0.00|[LOAD](https://morinlab.github.io/LLMPP/GAMBL/IRAG2.html)|[LOAD](https://morinlab.github.io/LLMPP/GAMBL/IRAG2_protein.html)|
85
-|2-a|[MALAT1](MALAT1)|0.00|[view](images/proteinpaint/MALAT1.svg)|[view](images/proteinpaint/MALAT1_NR_002819.svg)|
86
-|2-a|[NEAT1](NEAT1)|0.00|[view](images/proteinpaint/NEAT1.svg)|[view](images/proteinpaint/NEAT1_NR_028272.svg)|
87
-|2|[MAGT1](MAGT1)|1.53|[view](images/proteinpaint/MAGT1.svg)|[view](images/proteinpaint/MAGT1_NM_032121.svg)|
88
-|2|[MAP2K1](MAP2K1)|1.34|[view](images/proteinpaint/MAP2K1.svg)|[view](images/proteinpaint/MAP2K1_NM_002755.svg)|
89
-|2|[MAP4K4](MAP4K4)|1.15|[view](images/proteinpaint/MAP4K4.svg)|[view](images/proteinpaint/MAP4K4_NM_004834.svg)|
90
-|2|[MARK1](MARK1)|0.57|[view](images/proteinpaint/MARK1.svg)|[view](images/proteinpaint/MARK1_NM_018650.svg)|
91
-|2|[MECOM](MECOM)|2.10|[view](images/proteinpaint/MECOM.svg)|[view](images/proteinpaint/MECOM_NM_001105077.svg)|
92
-|2|[MET](MET)|0.76|[view](images/proteinpaint/MET.svg)|[view](images/proteinpaint/MET_NM_001127500.svg)|
93
-|2-a|[MIR155HG](MIR155HG)|0.19|[view](images/proteinpaint/MIR155HG.svg)|[view](images/proteinpaint/MIR155HG_NR_001458.svg)|
94
-|2|[MSH2](MSH2)|1.72|[view](images/proteinpaint/MSH2.svg)|[view](images/proteinpaint/MSH2_NM_000251.svg)|
95
-|2|[MSH6](MSH6)|1.91|[view](images/proteinpaint/MSH6.svg)|[view](images/proteinpaint/MSH6_NM_000179.svg)|
96
-|2|[MPDZ](MPDZ)|6.31|[view](images/proteinpaint/MPDZ.svg)|[view](images/proteinpaint/MPDZ_NM_003829.svg)|
97
-|2|[MYB](MYB)|0.57|[view](images/proteinpaint/MYB.svg)|[view](images/proteinpaint/MYB_NM_001130173.svg)|
98
-|2|[MYBPC2](MYBPC2)|0.57|[view](images/proteinpaint/MYBPC2.svg)|[view](images/proteinpaint/MYBPC2_NM_004533.svg)|
99
-|2-a|[MYO1E](MYO1E)|2.49|[view](images/proteinpaint/MYO1E.svg)|[view](images/proteinpaint/MYO1E_NM_004998.svg)|
100
-|2|[NANOG](NANOG)|0.00|[view](images/proteinpaint/NANOG.svg)|[view](images/proteinpaint/NANOG_NM_024865.svg)|
101
-|2|[NAV1](NAV1)|2.49|[view](images/proteinpaint/NAV1.svg)|[view](images/proteinpaint/NAV1_NM_020443.svg)|
102
-|2-a|[NCOA3](NCOA3)|1.15|[view](images/proteinpaint/NCOA3.svg)|[view](images/proteinpaint/NCOA3_NM_181659.svg)|
103
-|2|[NCOR1](NCOR1)|2.10|[view](images/proteinpaint/NCOR1.svg)|[view](images/proteinpaint/NCOR1_NM_006311.svg)|
104
-|2|[NF1](NF1)|2.87|[view](images/proteinpaint/NF1.svg)|[view](images/proteinpaint/NF1_NM_000267.svg)|
105
-|2|[NFKB2](NFKB2)|1.53|[view](images/proteinpaint/NFKB2.svg)|[view](images/proteinpaint/NFKB2_NM_001077494.svg)|
106
-|2|[NLRP5](NLRP5)|1.72|[view](images/proteinpaint/NLRP5.svg)|[view](images/proteinpaint/NLRP5_NM_153447.svg)|
107
-|2|[NLRP8](NLRP8)|0.38|[view](images/proteinpaint/NLRP8.svg)|[view](images/proteinpaint/NLRP8_NM_176811.svg)|
108
-|2|[N2RF2](N2RF2)|0.00|[view](images/proteinpaint/N2RF2.svg)|[LOAD](https://morinlab.github.io/LLMPP/GAMBL/N2RF2_protein.html)|
109
-|2|[ODZ3](ODZ3)|0.00|[LOAD](https://morinlab.github.io/LLMPP/GAMBL/ODZ3.html)|[LOAD](https://morinlab.github.io/LLMPP/GAMBL/ODZ3_protein.html)|
110
-|2-a|[P2RX5](P2RX5)|1.15|[view](images/proteinpaint/P2RX5.svg)|[view](images/proteinpaint/P2RX5_NM_002561.svg)|
111
-|2|[PAPOLG](PAPOLG)|0.38|[view](images/proteinpaint/PAPOLG.svg)|[view](images/proteinpaint/PAPOLG_NM_022894.svg)|
112
-|2|[PPP1R9B](PPP1R9B)|0.38|[view](images/proteinpaint/PPP1R9B.svg)|[LOAD](https://morinlab.github.io/LLMPP/GAMBL/PPP1R9B_protein.html)|
113
-|2|[PTPN23](PTPN23)|1.34|[view](images/proteinpaint/PTPN23.svg)|[view](images/proteinpaint/PTPN23_NM_015466.svg)|
114
-|2|[PASK](PASK)|1.91|[view](images/proteinpaint/PASK.svg)|[view](images/proteinpaint/PASK_NM_015148.svg)|
115
-|2-a|[PAX5](PAX5)|3.63|[view](images/proteinpaint/PAX5.svg)|[view](images/proteinpaint/PAX5_NM_016734.svg)|
116
-|2|[PCLO](PCLO)|16.44|[view](images/proteinpaint/PCLO.svg)|[view](images/proteinpaint/PCLO_NM_033026.svg)|
117
-|2|[PCDHB11](PCDHB11)|1.53|[view](images/proteinpaint/PCDHB11.svg)|[view](images/proteinpaint/PCDHB11_NM_018931.svg)|
118
-|2|[PDE4DIP](PDE4DIP)|0.00|[view](images/proteinpaint/PDE4DIP.svg)|[view](images/proteinpaint/PDE4DIP_NM_014644.svg)|
119
-|2|[PDS5B](PDS5B)|3.25|[view](images/proteinpaint/PDS5B.svg)|[view](images/proteinpaint/PDS5B_NM_015032.svg)|
120
-|2|[PHF6](PHF6)|2.49|[view](images/proteinpaint/PHF6.svg)|[view](images/proteinpaint/PHF6_NM_001015877.svg)|
121
-|2|[PIK3CD](PIK3CD)|3.82|[view](images/proteinpaint/PIK3CD.svg)|[view](images/proteinpaint/PIK3CD_NM_005026.svg)|
122
-|2|[PIK3R1](PIK3R1)|1.91|[view](images/proteinpaint/PIK3R1.svg)|[view](images/proteinpaint/PIK3R1_NM_181523.svg)|
123
-|2|[PKD1](PKD1)|3.44|[view](images/proteinpaint/PKD1.svg)|[view](images/proteinpaint/PKD1_NM_001009944.svg)|
124
-|2|[POGZ](POGZ)|0.96|[view](images/proteinpaint/POGZ.svg)|[view](images/proteinpaint/POGZ_NM_015100.svg)|
125
-|2|[PNPO](PNPO)|0.38|[view](images/proteinpaint/PNPO.svg)|[view](images/proteinpaint/PNPO_NM_018129.svg)|
126
-|2|[PRKCB](PRKCB)|4.97|[view](images/proteinpaint/PRKCB.svg)|[view](images/proteinpaint/PRKCB_NM_212535.svg)|
127
-|2|[PRPS1](PRPS1)|0.76|[view](images/proteinpaint/PRPS1.svg)|[view](images/proteinpaint/PRPS1_NM_002764.svg)|
128
-|2-a|[PTMA](PTMA)|0.38|[view](images/proteinpaint/PTMA.svg)|[view](images/proteinpaint/PTMA_NM_001099285.svg)|
129
-|2|[PTPN6](PTPN6)|2.68|[view](images/proteinpaint/PTPN6.svg)|[view](images/proteinpaint/PTPN6_NM_002831.svg)|
130
-|2|[PTPRK](PTPRK)|4.21|[view](images/proteinpaint/PTPRK.svg)|[view](images/proteinpaint/PTPRK_NM_001135648.svg)|
131
-|2-a|[PTPN1](PTPN1)|0.19|[view](images/proteinpaint/PTPN1.svg)|[view](images/proteinpaint/PTPN1_NM_002827.svg)|
132
-|2|[RAC2](RAC2)|1.15|[view](images/proteinpaint/RAC2.svg)|[view](images/proteinpaint/RAC2_NM_002872.svg)|
133
-|2|[RAD9A](RAD9A)|0.19|[view](images/proteinpaint/RAD9A.svg)|[view](images/proteinpaint/RAD9A_NM_004584.svg)|
134
-|2|[RARA](RARA)|1.34|[view](images/proteinpaint/RARA.svg)|[view](images/proteinpaint/RARA_NM_000964.svg)|
135
-|2-a|[RFTN1](RFTN1)|4.59|[view](images/proteinpaint/RFTN1.svg)|[view](images/proteinpaint/RFTN1_NM_015150.svg)|
136
-|2-a|[RHEX](RHEX)(C1orf186)|0.00|[LOAD](https://morinlab.github.io/LLMPP/GAMBL/RHEX.html)|[LOAD](https://morinlab.github.io/LLMPP/GAMBL/RHEX_protein.html)|
137
-|2-a|[RHOH](RHOH)|1.15|[view](images/proteinpaint/RHOH.svg)|[view](images/proteinpaint/RHOH_NM_004310.svg)|
138
-|2|[RUNX1](RUNX1)|0.96|[view](images/proteinpaint/RUNX1.svg)|[view](images/proteinpaint/RUNX1_NM_001754.svg)|
139
-|2|[RUBCNL](RUBCNL)(KIAA0226L)|0.57|[LOAD](https://morinlab.github.io/LLMPP/GAMBL/RUBCNL.html)|[LOAD](https://morinlab.github.io/LLMPP/GAMBL/RUBCNL_protein.html)|
140
-|2-a|[SEL1L3](SEL1L3)|5.16|[view](images/proteinpaint/SEL1L3.svg)|[view](images/proteinpaint/SEL1L3_NM_015187.svg)|
141
-|2|[SAMD9L](SAMD9L)|2.49|[view](images/proteinpaint/SAMD9L.svg)|[view](images/proteinpaint/SAMD9L_NM_152703.svg)|
142
-|2|[SARM1](SARM1)|0.57|[view](images/proteinpaint/SARM1.svg)|[view](images/proteinpaint/SARM1_NM_015077.svg)|
143
-|2-a|[SEPTIN9](SEPTIN9)(SEPT9)|0.00|[LOAD](https://morinlab.github.io/LLMPP/GAMBL/SEPTIN9.html)|[LOAD](https://morinlab.github.io/LLMPP/GAMBL/SEPTIN9_protein.html)|
144
-|2-a|[SERPINA9](SERPINA9)|1.15|[view](images/proteinpaint/SERPINA9.svg)|[view](images/proteinpaint/SERPINA9_NM_175739.svg)|
145
-|2|[SETD2](SETD2)|3.63|[view](images/proteinpaint/SETD2.svg)|[view](images/proteinpaint/SETD2_NM_014159.svg)|
146
-|2|[SETD5](SETD5)|2.49|[view](images/proteinpaint/SETD5.svg)|[view](images/proteinpaint/SETD5_NM_001080517.svg)|
147
-|2|[SIAH2](SIAH2)|1.72|[view](images/proteinpaint/SIAH2.svg)|[view](images/proteinpaint/SIAH2_NM_005067.svg)|
148
-|2|[SLC34A2](SLC34A2)|0.76|[view](images/proteinpaint/SLC34A2.svg)|[view](images/proteinpaint/SLC34A2_NM_006424.svg)|
149
-|2|[SMEK1](SMEK1)(PPP4R3A)|0.00|[view](images/proteinpaint/SMEK1.svg)|[view](images/proteinpaint/SMEK1_NM_001284280.svg)|
150
-|2|[SRRM2](SRRM2)|3.06|[view](images/proteinpaint/SRRM2.svg)|[view](images/proteinpaint/SRRM2_NM_016333.svg)|
151
-|2-a|[ST6GAL1](ST6GAL1)|1.15|[view](images/proteinpaint/ST6GAL1.svg)|[view](images/proteinpaint/ST6GAL1_NM_173216.svg)|
152
-|2|[STAT5B](STAT5B)|0.57|[view](images/proteinpaint/STAT5B.svg)|[view](images/proteinpaint/STAT5B_NM_012448.svg)|
153
-|2|[SYK](SYK)|1.53|[view](images/proteinpaint/SYK.svg)|[view](images/proteinpaint/SYK_NM_003177.svg)|
154
-|2|[SYPL1](SYPL1)|0.96|[view](images/proteinpaint/SYPL1.svg)|[view](images/proteinpaint/SYPL1_NM_006754.svg)|
155
-|2|[TAP1](TAP1)|0.57|[view](images/proteinpaint/TAP1.svg)|[view](images/proteinpaint/TAP1_NM_000593.svg)|
156
-|2-a|[TBC1D4](TBC1D4)|2.29|[view](images/proteinpaint/TBC1D4.svg)|[view](images/proteinpaint/TBC1D4_NM_014832.svg)|
157
-|2-a|[TCL1A](TCL1A)|2.10|[view](images/proteinpaint/TCL1A.svg)|[view](images/proteinpaint/TCL1A_NM_021966.svg)|
158
-|2|[TGFBR2](TGFBR2)|2.10|[view](images/proteinpaint/TGFBR2.svg)|[view](images/proteinpaint/TGFBR2_NM_001024847.svg)|
159
-|2|[TIPARP](TIPARP)|0.19|[view](images/proteinpaint/TIPARP.svg)|[view](images/proteinpaint/TIPARP_NM_015508.svg)|
160
-|2|[TLR2](TLR2)|2.87|[view](images/proteinpaint/TLR2.svg)|[view](images/proteinpaint/TLR2_NM_003264.svg)|
161
-|2|[TRAF3](TRAF3)|0.96|[view](images/proteinpaint/TRAF3.svg)|[view](images/proteinpaint/TRAF3_NM_145725.svg)|
162
-|2|[TRAF6](TRAF6)|1.34|[view](images/proteinpaint/TRAF6.svg)|[view](images/proteinpaint/TRAF6_NM_145803.svg)|
163
-|2-a|[MIR142](MIR142)(MIR142HG)|0.00|[LOAD](https://morinlab.github.io/LLMPP/GAMBL/MIR142.html)|[LOAD](https://morinlab.github.io/LLMPP/GAMBL/MIR142_protein.html)|
164
-|2-a|[UBE2J1](UBE2J1)|0.76|[view](images/proteinpaint/UBE2J1.svg)|[view](images/proteinpaint/UBE2J1_NM_016021.svg)|
165
-|2|[UBR5](UBR5)|3.63|[view](images/proteinpaint/UBR5.svg)|[view](images/proteinpaint/UBR5_NM_015902.svg)|
166
-|2|[UNC5B](UNC5B)|1.53|[view](images/proteinpaint/UNC5B.svg)|[view](images/proteinpaint/UNC5B_NM_170744.svg)|
167
-|2|[UNC5D](UNC5D)|2.10|[view](images/proteinpaint/UNC5D.svg)|[view](images/proteinpaint/UNC5D_NM_080872.svg)|
168
-|2|[WAC](WAC)|2.68|[view](images/proteinpaint/WAC.svg)|[view](images/proteinpaint/WAC_NM_016628.svg)|
169
-|2|[WDFY3](WDFY3)|4.21|[view](images/proteinpaint/WDFY3.svg)|[view](images/proteinpaint/WDFY3_NM_014991.svg)|
170
-|2|[WNK1](WNK1)|4.59|[view](images/proteinpaint/WNK1.svg)|[view](images/proteinpaint/WNK1_NM_018979.svg)|
171
-|2-a|[XBP1](XBP1)|1.15|[view](images/proteinpaint/XBP1.svg)|[view](images/proteinpaint/XBP1_NM_005080.svg)|
172
-|2|[YY1](YY1)|1.15|[view](images/proteinpaint/YY1.svg)|[view](images/proteinpaint/YY1_NM_003403.svg)|
173
-|2|[ZBTB7A](ZBTB7A)|1.72|[view](images/proteinpaint/ZBTB7A.svg)|[view](images/proteinpaint/ZBTB7A_NM_015898.svg)|
174
-|2-a|[ZCCHC7](ZCCHC7)|0.57|[view](images/proteinpaint/ZCCHC7.svg)|[view](images/proteinpaint/ZCCHC7_NM_032226.svg)|
175
-|2|[ZEB2](ZEB2)|3.82|[view](images/proteinpaint/ZEB2.svg)|[view](images/proteinpaint/ZEB2_NM_014795.svg)|
176
-|2|[ZFAT](ZFAT)|1.34|[view](images/proteinpaint/ZFAT.svg)|[view](images/proteinpaint/ZFAT_NM_020863.svg)|
177
-|2|[ZFX](ZFX)|0.38|[view](images/proteinpaint/ZFX.svg)|[view](images/proteinpaint/ZFX_NM_003410.svg)|
178
-|2|[ZNF423](ZNF423)|1.91|[view](images/proteinpaint/ZNF423.svg)|[view](images/proteinpaint/ZNF423_NM_015069.svg)|
179
-|2|[ZNF217](ZNF217)|2.10|[view](images/proteinpaint/ZNF217.svg)|[view](images/proteinpaint/ZNF217_NM_006526.svg)|
tier2_fl.md
... ...
@@ -1,56 +0,0 @@
1
-# FL genes
2
-## Origins of FL genes
3
-![sankey](FL_sankey-1.svg)
4
-## Tier 2 FL genes
5
-|Category|Gene|FL mutation frequency|gene|protein|
6
-| :---: | :----: | :---: | :---: | :---: |
7
-|2|[ABL2](ABL2)|0.69|[view](images/proteinpaint/ABL2.svg)|[view](images/proteinpaint/ABL2_NM_007314.svg)|
8
-|2-a|[ACTG1](ACTG1)|3.00|[view](images/proteinpaint/ACTG1.svg)|[view](images/proteinpaint/ACTG1_NM_001614.svg)|
9
-|2|[ATP6V1A](ATP6V1A)|1.15|[view](images/proteinpaint/ATP6V1A.svg)|[view](images/proteinpaint/ATP6V1A_NM_001690.svg)|
10
-|2|[BCL10](BCL10)|2.31|[view](images/proteinpaint/BCL10.svg)|[view](images/proteinpaint/BCL10_NM_003921.svg)|
11
-|2|[CCDC42BPB](CCDC42BPB)|0.00|[view](images/proteinpaint/CCDC42BPB.svg)|[LOAD](https://morinlab.github.io/LLMPP/GAMBL/CCDC42BPB_protein.html)|
12
-|2|[CD70](CD70)|1.15|[view](images/proteinpaint/CD70.svg)|[view](images/proteinpaint/CD70_NM_001252.svg)|
13
-|2|[CD79B](CD79B)|2.77|[view](images/proteinpaint/CD79B.svg)|[view](images/proteinpaint/CD79B_NM_000626.svg)|
14
-|2|[CILP](CILP)|0.46|[view](images/proteinpaint/CILP.svg)|[view](images/proteinpaint/CILP_NM_003613.svg)|
15
-|2|[CPNE8](CPNE8)|2.08|[view](images/proteinpaint/CPNE8.svg)|[view](images/proteinpaint/CPNE8_NM_153634.svg)|
16
-|2-a|[CXCR4](CXCR4)|3.46|[view](images/proteinpaint/CXCR4.svg)|[view](images/proteinpaint/CXCR4_NM_001008540.svg)|
17
-|2|[CYP2A6](CYP2A6)|0.23|[view](images/proteinpaint/CYP2A6.svg)|[view](images/proteinpaint/CYP2A6_NM_000762.svg)|
18
-|2|[DDX3X](DDX3X)|2.54|[view](images/proteinpaint/DDX3X.svg)|[view](images/proteinpaint/DDX3X_NM_001356.svg)|
19
-|2-a|[DUSP2](DUSP2)|2.31|[view](images/proteinpaint/DUSP2.svg)|[view](images/proteinpaint/DUSP2_NM_004418.svg)|
20
-|2|[DHX15](DHX15)|0.69|[view](images/proteinpaint/DHX15.svg)|[view](images/proteinpaint/DHX15_NM_001358.svg)|
21
-|2|[EEF1A1](EEF1A1)|11.32|[view](images/proteinpaint/EEF1A1.svg)|[view](images/proteinpaint/EEF1A1_NM_001402.svg)|
22
-|2|[FZR1](FZR1)|1.15|[view](images/proteinpaint/FZR1.svg)|[view](images/proteinpaint/FZR1_NM_001136198.svg)|
23
-|2|[GBP7](GBP7)|0.23|[view](images/proteinpaint/GBP7.svg)|[view](images/proteinpaint/GBP7_NM_207398.svg)|
24
-|2|[GRM6](GRM6)|0.92|[view](images/proteinpaint/GRM6.svg)|[view](images/proteinpaint/GRM6_NM_000843.svg)|
25
-|2|[HIST1H2BM](HIST1H2BM)(H2BC14)|0.69|[view](images/proteinpaint/HIST1H2BM.svg)|[view](images/proteinpaint/HIST1H2BM_NM_003521.svg)|
26
-|2|[HIST1H3I](HIST1H3I)(H3C11)|1.15|[view](images/proteinpaint/HIST1H3I.svg)|[view](images/proteinpaint/HIST1H3I_NM_003533.svg)|
27
-|2|[HLA-B](HLA-B)|3.46|[view](images/proteinpaint/HLA-B.svg)|[view](images/proteinpaint/HLA-B_NM_005514.svg)|
28
-|2|[HNRNPD](HNRNPD)|0.00|[view](images/proteinpaint/HNRNPD.svg)|[view](images/proteinpaint/HNRNPD_NM_031370.svg)|
29
-|2-a|[ID3](ID3)|0.92|[view](images/proteinpaint/ID3.svg)|[view](images/proteinpaint/ID3_NM_002167.svg)|
30
-|2-a|[IGLL5](IGLL5)|35.33|[view](images/proteinpaint/IGLL5.svg)|[view](images/proteinpaint/IGLL5_NM_001178126.svg)|
31
-|2|[JUP](JUP)|1.15|[view](images/proteinpaint/JUP.svg)|[view](images/proteinpaint/JUP_NM_002230.svg)|
32
-|2|[KIR3DL1](KIR3DL1)|1.15|[view](images/proteinpaint/KIR3DL1.svg)|[view](images/proteinpaint/KIR3DL1_NM_013289.svg)|
33
-|2-a|[LAPTM5](LAPTM5)|5.77|[view](images/proteinpaint/LAPTM5.svg)|[view](images/proteinpaint/LAPTM5_NM_006762.svg)|
34
-|2|[MAGEC1](MAGEC1)|1.85|[view](images/proteinpaint/MAGEC1.svg)|[view](images/proteinpaint/MAGEC1_NM_005462.svg)|
35
-|2|[MAP7D1](MAP7D1)|0.00|[view](images/proteinpaint/MAP7D1.svg)|[view](images/proteinpaint/MAP7D1_NM_018067.svg)|
36
-|2|[MGEA5](MGEA5)(OGA)|1.85|[view](images/proteinpaint/MGEA5.svg)|[view](images/proteinpaint/MGEA5_NM_012215.svg)|
37
-|2|[MKI67](MKI67)|1.15|[view](images/proteinpaint/MKI67.svg)|[view](images/proteinpaint/MKI67_NM_002417.svg)|
38
-|2-a|[MYC](MYC)|0.92|[view](images/proteinpaint/MYC.svg)|[view](images/proteinpaint/MYC_NM_002467.svg)|
39
-|2|[MYCBP2](MYCBP2)|3.00|[view](images/proteinpaint/MYCBP2.svg)|[view](images/proteinpaint/MYCBP2_NM_015057.svg)|
40
-|2|[MYD88](MYD88)|1.85|[view](images/proteinpaint/MYD88.svg)|[view](images/proteinpaint/MYD88_NM_002468.svg)|
41
-|2|[NFKBIA](NFKBIA)|0.69|[view](images/proteinpaint/NFKBIA.svg)|[view](images/proteinpaint/NFKBIA_NM_020529.svg)|
42
-|2|[OR8H2](OR8H2)|1.15|[view](images/proteinpaint/OR8H2.svg)|[view](images/proteinpaint/OR8H2_NM_001005200.svg)|
43
-|2|[P2RY8](P2RY8)|2.31|[view](images/proteinpaint/P2RY8.svg)|[view](images/proteinpaint/P2RY8_NM_178129.svg)|
44
-|2|[PDS5B](PDS5B)|1.62|[view](images/proteinpaint/PDS5B.svg)|[view](images/proteinpaint/PDS5B_NM_015032.svg)|
45
-|2|[PPP4C](PPP4C)|2.08|[view](images/proteinpaint/PPP4C.svg)|[view](images/proteinpaint/PPP4C_NM_002720.svg)|
46
-|2|[PRKDC](PRKDC)|3.00|[view](images/proteinpaint/PRKDC.svg)|[view](images/proteinpaint/PRKDC_NM_006904.svg)|
47
-|2|[PZP](PZP)|0.92|[view](images/proteinpaint/PZP.svg)|[view](images/proteinpaint/PZP_NM_002864.svg)|
48
-|2|[RBM6](RBM6)|0.46|[view](images/proteinpaint/RBM6.svg)|[view](images/proteinpaint/RBM6_NM_005777.svg)|
49
-|2|[SESN1](SESN1)|0.23|[view](images/proteinpaint/SESN1.svg)|[view](images/proteinpaint/SESN1_NM_014454.svg)|
50
-|2|[SHROOM3](SHROOM3)|1.15|[view](images/proteinpaint/SHROOM3.svg)|[view](images/proteinpaint/SHROOM3_NM_020859.svg)|
51
-|2|[SRRM2](SRRM2)|1.39|[view](images/proteinpaint/SRRM2.svg)|[view](images/proteinpaint/SRRM2_NM_016333.svg)|
52
-|2|[STAB2](STAB2)|2.54|[view](images/proteinpaint/STAB2.svg)|[view](images/proteinpaint/STAB2_NM_017564.svg)|
53
-|2|[TMEM30A](TMEM30A)|0.92|[view](images/proteinpaint/TMEM30A.svg)|[view](images/proteinpaint/TMEM30A_NM_018247.svg)|
54
-|2|[XIRP2](XIRP2)|3.93|[view](images/proteinpaint/XIRP2.svg)|[view](images/proteinpaint/XIRP2_NM_152381.svg)|
55
-|2|[TPP1](TPP1)|0.92|[view](images/proteinpaint/TPP1.svg)|[view](images/proteinpaint/TPP1_NM_000391.svg)|
56
-|2|[ZC3H12A](ZC3H12A)|0.46|[view](images/proteinpaint/ZC3H12A.svg)|[view](images/proteinpaint/ZC3H12A_NM_025079.svg)|
tier2_mcl.md
... ...
@@ -1,32 +0,0 @@
1
-# MCL genes, Tier 2
2
-|Category|Gene|Frequency(GAMBL)|gene|protein|
3
-| :---: | :----: | :---: | :---: | :---: |
4
-|2|[ANK2](ANK2)|1.9|[view](images/proteinpaint/ANK2.svg)|[view](images/proteinpaint/ANK2_NM_001148.svg)|
5
-|2|[ARID1B](ARID1B)|1.9|[view](images/proteinpaint/ARID1B.svg)|[view](images/proteinpaint/ARID1B_NM_017519.svg)|
6
-|2|[ATP11C](ATP11C)|0|[view](images/proteinpaint/ATP11C.svg)|[view](images/proteinpaint/ATP11C_NM_173694.svg)|
7
-|2|[B2M](B2M)|1.42|[view](images/proteinpaint/B2M.svg)|[view](images/proteinpaint/B2M_NM_004048.svg)|
8
-|2|[CDH8](CDH8)|0.47|[view](images/proteinpaint/CDH8.svg)|[view](images/proteinpaint/CDH8_NM_001796.svg)|
9
-|2|[COL11A1](COL11A1)|0.47|[view](images/proteinpaint/COL11A1.svg)|[view](images/proteinpaint/COL11A1_NM_001854.svg)|
10
-|2|[COL16A1](COL16A1)|0.95|[view](images/proteinpaint/COL16A1.svg)|[view](images/proteinpaint/COL16A1_NM_001856.svg)|
11
-|2|[CTNNA2](CTNNA2)|0|[view](images/proteinpaint/CTNNA2.svg)|[view](images/proteinpaint/CTNNA2_NM_004389.svg)|
12
-|2|[DHDH](DHDH)|0|[view](images/proteinpaint/DHDH.svg)|[view](images/proteinpaint/DHDH_NM_014475.svg)|
13
-|2|[DLC1](DLC1)|1.42|[view](images/proteinpaint/DLC1.svg)|[view](images/proteinpaint/DLC1_NM_182643.svg)|
14
-|2|[EIF2AK4](EIF2AK4)|0.47|[view](images/proteinpaint/EIF2AK4.svg)|[view](images/proteinpaint/EIF2AK4_NM_001013703.svg)|
15
-|2|[ESX1](ESX1)|0.47|[view](images/proteinpaint/ESX1.svg)|[view](images/proteinpaint/ESX1_NM_153448.svg)|
16
-|2|[FAT4](FAT4)|3.79|[view](images/proteinpaint/FAT4.svg)|[view](images/proteinpaint/FAT4_NM_024582.svg)|
17
-|2|[GRIN2A](GRIN2A)|0.47|[view](images/proteinpaint/GRIN2A.svg)|[view](images/proteinpaint/GRIN2A_NM_001134407.svg)|
18
-|2|[HEPH](HEPH)|0.95|[view](images/proteinpaint/HEPH.svg)|[view](images/proteinpaint/HEPH_NM_138737.svg)|
19
-|2|[KMT2C](KMT2C)|0.47|[view](images/proteinpaint/KMT2C.svg)|[view](images/proteinpaint/KMT2C_NM_170606.svg)|
20
-|2|[MRGPRF](MRGPRF)|0|[view](images/proteinpaint/MRGPRF.svg)|[view](images/proteinpaint/MRGPRF_NM_001098515.svg)|
21
-|2|[NIN](NIN)|0|[view](images/proteinpaint/NIN.svg)|[view](images/proteinpaint/NIN_NM_182944.svg)|
22
-|2|[OGDHL](OGDHL)|1.42|[view](images/proteinpaint/OGDHL.svg)|[view](images/proteinpaint/OGDHL_NM_018245.svg)|
23
-|2|[PCDHB2](PCDHB2)|0.47|[view](images/proteinpaint/PCDHB2.svg)|[view](images/proteinpaint/PCDHB2_NM_018936.svg)|
24
-|2|[PLXNB3](PLXNB3)|0|[view](images/proteinpaint/PLXNB3.svg)|[view](images/proteinpaint/PLXNB3_NM_005393.svg)|
25
-|2|[ROBO2](ROBO2)|1.9|[LOAD](https://morinlab.github.io/LLMPP/GAMBL/ROBO2.html)|[view](images/proteinpaint/ROBO2_NM_001128929.svg)|
26
-|2|[SALL3](SALL3)|0.95|[view](images/proteinpaint/SALL3.svg)|[view](images/proteinpaint/SALL3_NM_171999.svg)|
27
-|2|[SI](SI)|1.42|[view](images/proteinpaint/SI.svg)|[view](images/proteinpaint/SI_NM_001041.svg)|
28
-|2|[SMARCB1](SMARCB1)|1.9|[view](images/proteinpaint/SMARCB1.svg)|[view](images/proteinpaint/SMARCB1_NM_003073.svg)|
29
-|2|[SMC1A](SMC1A)|0|[view](images/proteinpaint/SMC1A.svg)|[view](images/proteinpaint/SMC1A_NM_006306.svg)|
30
-|2|[TBC1D26](TBC1D26)|0|[view](images/proteinpaint/TBC1D26.svg)|[view](images/proteinpaint/TBC1D26_NM_178571.svg)|
31
-|2|[ZNF117](ZNF117)|0|[view](images/proteinpaint/ZNF117.svg)|[view](images/proteinpaint/ZNF117_NM_015852.svg)|
32
-|2|[ZNF296](ZNF296)|0|[view](images/proteinpaint/ZNF296.svg)|[view](images/proteinpaint/ZNF296_NM_145288.svg)|