DLBCL_genes_with_bib.md
... ...
@@ -16,15 +16,15 @@
16 16
| ATR | 2 | (Reddy et al. 2017) |
17 17
| B2M | 1 | (Morin et al. 2011) |
18 18
| BCL10 | 1 | (Morin et al. 2011; Russler-Germain et al. 2023) |
19
-| BCL11A | 1 | \] |
19
+| BCL11A | 1 | |
20 20
| BCL2 | 1 | (Tanaka et al. 1992; Morin et al. 2011) |
21 21
| BCL6 | 1 | (Morin et al. 2011) |
22 22
| BCL7A | 1 | (Arthur et al. 2018; Krysiak et al. 2017) |
23
-| BCOR | 1 | \] |
24
-| BCR | 1 | \] |
23
+| BCOR | 1 | |
24
+| BCR | 1 | |
25 25
| BIRC3 | 2 | (Arthur et al. 2018) |
26 26
| BIRC6 | 1 | (Reddy et al. 2017) |
27
-| BLK | 2 | \] |
27
+| BLK | 2 | |
28 28
| BRAF | 1 | (Tiacci et al. 2011) |
29 29
| BRINP3 | 2 | (Reddy et al. 2017) |
30 30
| BTBD3 | 2 | (Reddy et al. 2017) |
... ...
@@ -75,21 +75,21 @@
75 75
| DUSP2 | 1 | (Morin et al. 2013) |
76 76
| EBF1 | 1 | (Bohle et al. 2013) |
77 77
| EEF1A1 | 1 | (Hübschmann et al. 2021) |
78
-| EIF2AK3 | 2 | \] |
78
+| EIF2AK3 | 2 | |
79 79
| EP300 | 1 | (Laura Pasqualucci, Dominguez-Sola, et al. 2011) |
80 80
| ETS1 | 1 | (Morin et al. 2011) |
81 81
| ETV6 | 1 | (Arthur et al. 2018) |
82 82
| EZH2 | 1 | (Morin et al. 2010) |
83
-| EZR | 2 | \] |
84
-| FAM102A | 2 | \] |
83
+| EZR | 2 | |
84
+| FAM102A | 2 | |
85 85
| FAM38B | 2 | (Morin et al. 2013) |
86
-| FANK1 | 2 | \] |
86
+| FANK1 | 2 | |
87 87
| FAS | 1 | (Scholl et al. 2007) |
88 88
| FAT4 | 2 | (Morin et al. 2013) |
89 89
| FBXO11 | 1 | (Hübschmann et al. 2021) |
90 90
| FBXW7 | 1 | (Zhang et al. 2013) |
91
-| FCRL3 | 2 | \] |
92
-| FNBP1 | 2 | \] |
91
+| FCRL3 | 2 | |
92
+| FNBP1 | 2 | |
93 93
| FNDC1 | 2 | (Morin et al. 2013) |
94 94
| FOXC1 | 1 | (Schmitz et al. 2018) |
95 95
| FOXO1 | 1 | (Morin et al. 2011) |
... ...
@@ -115,17 +115,17 @@
115 115
| HIST1H2AG | 2 | (Morin et al. 2013; Krysiak et al. 2017) |
116 116
| HIST1H2AM | 1 | (Krysiak et al. 2017) |
117 117
| HIST1H2BC | 1 | (Reddy et al. 2017; Krysiak et al. 2017) |
118
-| HIST1H2BK | 1 | \] |
118
+| HIST1H2BK | 1 | |
119 119
| HIST1H3B | 1 | (Zhang et al. 2013) |
120 120
| HIST2H2BE | 1 | (Schmitz et al. 2018) |
121
-| HLA-A | 1 | \] |
122
-| HLA-B | 1 | \] |
123
-| HLA-C | 1 | \] |
124
-| HLA-DMA | 1 | \] |
125
-| HLA-DMB | 1 | \] |
121
+| HLA-A | 1 | |
122
+| HLA-B | 1 | |
123
+| HLA-C | 1 | |
124
+| HLA-DMA | 1 | |
125
+| HLA-DMB | 1 | |
126 126
| HLA-DQA1 | 1 | (Hübschmann et al. 2021) |
127 127
| HNF1B | 2 | (Laura Pasqualucci, Trifonov, et al. 2011) |
128
-| HNRNPD | 1 | \] |
128
+| HNRNPD | 1 | |
129 129
| HNRNPH1 | 1 | (Pararajalingam et al. 2020) |
130 130
| HNRNPU | 1 | (Reddy et al. 2017) |
131 131
| HRAS | 2 | (Reddy et al. 2017) |
... ...
@@ -137,11 +137,11 @@
137 137
| IKBKB | 2 | (Reddy et al. 2017) |
138 138
| IKBKE | 2 | (Hübschmann et al. 2021) |
139 139
| IKZF3 | 1 | (Morin et al. 2013) |
140
-| IL16 | 1 | \] |
140
+| IL16 | 1 | |
141 141
| IL4R | 1 | (Duns et al. 2021) |
142 142
| IL6 | 2 | (Chapuy et al. 2018) |
143 143
| INO80 | 2 | (Zhang et al. 2013) |
144
-| IRAG2 | 2 | \] |
144
+| IRAG2 | 2 | |
145 145
| IRF1 | 2 | (Hübschmann et al. 2021) |
146 146
| IRF4 | 1 | (Morin et al. 2011) |
147 147
| IRF8 | 1 | (Morin et al. 2011) |
... ...
@@ -178,7 +178,7 @@
178 178
| MET | 2 | (Reddy et al. 2017) |
179 179
| MGA | 1 | (Zhang et al. 2013) |
180 180
| MIR142 | 2 | (Kwanhian et al. 2012) |
181
-| MIR155HG | 2 | \] |
181
+| MIR155HG | 2 | |
182 182
| MPDZ | 2 | (Morin et al. 2013) |
183 183
| MPEG1 | 1 | (Morin et al. 2013) |
184 184
| MS4A1 | 1 | (Rushton et al. 2020) |
... ...
@@ -189,22 +189,22 @@
189 189
| MYBPC2 | 2 | (Schmitz et al. 2018) |
190 190
| MYC | 1 | (L. Pasqualucci et al. 2001) |
191 191
| MYD88 | 1 | (Ngo et al. 2011) |
192
-| MYO1E | 2 | \] |
192
+| MYO1E | 2 | |
193 193
| MYOM2 | 1 | (Laura Pasqualucci, Trifonov, et al. 2011) |
194 194
| N2RF2 | 2 | (Hübschmann et al. 2021) |
195 195
| NANOG | 2 | (Chapuy et al. 2018) |
196 196
| NAV1 | 2 | (Chapuy et al. 2018) |
197
-| NCOA3 | 2 | \] |
197
+| NCOA3 | 2 | |
198 198
| NCOR1 | 2 | (Reddy et al. 2017) |
199
-| NCOR2 | 1 | \] |
199
+| NCOR2 | 1 | |
200 200
| NEAT1 | 2 | (Arthur et al. 2018) |
201 201
| NF1 | 2 | (Reddy et al. 2017) |
202
-| NFKB1 | 1 | \] |
202
+| NFKB1 | 1 | |
203 203
| NFKB2 | 2 | (Reddy et al. 2017) |
204 204
| NFKBIA | 1 | (Lake et al. 2009; Russler-Germain et al. 2023) |
205 205
| NFKBIE | 1 | (Morin et al. 2016) |
206 206
| NFKBIZ | 1 | (Morin et al. 2016) |
207
-| NLRC5 | 1 | \] |
207
+| NLRC5 | 1 | |
208 208
| NLRP5 | 2 | (Morin et al. 2013) |
209 209
| NLRP8 | 2 | (Chapuy et al. 2018) |
210 210
| NOL9 | 1 | (Schmitz et al. 2018) |
... ...
@@ -217,7 +217,7 @@
217 217
| PAPOLG | 2 | (Schmitz et al. 2018) |
218 218
| PASK | 2 | (Morin et al. 2013) |
219 219
| PAX5 | 2 | (L. Pasqualucci et al. 2001) |
220
-| PCBP1 | 1 | \] |
220
+| PCBP1 | 1 | |
221 221
| PCDHB11 | 2 | (Morin et al. 2013) |
222 222
| PCLO | 2 | (Lohr et al. 2012) |
223 223
| PDE4DIP | 2 | (Chapuy et al. 2018) |
... ...
@@ -232,45 +232,45 @@
232 232
| POGZ | 2 | (Morin et al. 2013) |
233 233
| POU2AF1 | 1 | (Krysiak et al. 2017) |
234 234
| POU2F2 | 1 | (Zhang et al. 2013; Krysiak et al. 2017) |
235
-| PPP1R9B | 2 | \] |
235
+| PPP1R9B | 2 | |
236 236
| PRDM1 | 1 | (**pasqualucciInactivationPRDM1BLIMP12006?**) |
237 237
| PRKCB | 2 | (Morin et al. 2013) |
238 238
| PRKDC | 1 | (Schmitz et al. 2018; Hübschmann et al. 2021) |
239 239
| PRPS1 | 2 | (Chapuy et al. 2018) |
240
-| PTEN | 1 | \] |
241
-| PTMA | 2 | \] |
242
-| PTPN1 | 2 | \] |
240
+| PTEN | 1 | |
241
+| PTMA | 2 | |
242
+| PTPN1 | 2 | |
243 243
| PTPN23 | 2 | (Morin et al. 2013) |
244 244
| PTPN6 | 2 | (Reddy et al. 2017) |
245
-| PTPRD | 1 | \] |
245
+| PTPRD | 1 | |
246 246
| PTPRK | 2 | (Reddy et al. 2017) |
247 247
| RAC2 | 2 | (Hübschmann et al. 2021) |
248 248
| RAD9A | 2 | (Chapuy et al. 2018) |
249 249
| RARA | 2 | (Reddy et al. 2017) |
250 250
| RB1 | 1 | (Morin et al. 2013) |
251
-| RCC | 2 | \] |
251
+| RCC | 2 | |
252 252
| RFTN1 | 2 | (Arthur et al. 2018) |
253
-| RFX7 | 1 | \] |
254
-| RFXAP | 1 | \] |
255
-| RHEX | 2 | \] |
253
+| RFX7 | 1 | |
254
+| RFXAP | 1 | |
255
+| RHEX | 2 | |
256 256
| RHOA | 1 | (L. Pasqualucci et al. 2001) |
257
-| RHOH | 2 | \] |
257
+| RHOH | 2 | |
258 258
| RRAGC | 1 | (Okosun et al. 2016) |
259
-| RUBCNL | 2 | \] |
259
+| RUBCNL | 2 | |
260 260
| RUNX1 | 2 | (Reddy et al. 2017) |
261 261
| S1PR2 | 1 | (Morin et al. 2011) |
262 262
| SAMD9L | 2 | (Morin et al. 2013) |
263 263
| SARM1 | 2 | (Morin et al. 2013) |
264
-| SEL1L3 | 2 | \] |
265
-| SEPTIN9 | 2 | \] |
264
+| SEL1L3 | 2 | |
265
+| SEPTIN9 | 2 | |
266 266
| SERPINA9 | 2 | (Arthur et al. 2018) |
267 267
| SETD1B | 1 | (Reddy et al. 2017) |
268 268
| SETD2 | 2 | (Zhang et al. 2013) |
269 269
| SETD5 | 2 | (Reddy et al. 2017) |
270
-| SF3B1 | 1 | \] |
270
+| SF3B1 | 1 | |
271 271
| SGK1 | 1 | (Morin et al. 2011) |
272 272
| SIAH2 | 2 | (Hübschmann et al. 2021) |
273
-| SIN3A | 1 | \] |
273
+| SIN3A | 1 | |
274 274
| SLC34A2 | 2 | (Hübschmann et al. 2021) |
275 275
| SMARCA4 | 1 | (Zhang et al. 2013; Krysiak et al. 2017) |
276 276
| SMEK1 | 2 | (Chapuy et al. 2018) |
... ...
@@ -287,7 +287,7 @@
287 287
| TAP1 | 2 | (Schmitz et al. 2018) |
288 288
| TBC1D4 | 2 | (Arthur et al. 2018) |
289 289
| TBL1XR1 | 1 | (Mareschal et al. 2016) |
290
-| TCL1A | 2 | \] |
290
+| TCL1A | 2 | |
291 291
| TET2 | 1 | (Albuquerque et al. 2017) |
292 292
| TGFBR2 | 2 | (Reddy et al. 2017) |
293 293
| TIPARP | 2 | (Reddy et al. 2017) |
... ...
@@ -300,21 +300,21 @@
300 300
| TP53 | 1 | (Morin et al. 2011) |
301 301
| TRAF3 | 2 | (Laura Pasqualucci, Trifonov, et al. 2011) |
302 302
| TRAF6 | 2 | (Hübschmann et al. 2021) |
303
-| TRIP12 | 1 | \] |
303
+| TRIP12 | 1 | |
304 304
| TRRAP | 1 | (Parry et al. 2013) |
305 305
| UBE2A | 1 | (Reddy et al. 2017) |
306
-| UBE2J1 | 2 | \] |
306
+| UBE2J1 | 2 | |
307 307
| UBR5 | 2 | (Zhang et al. 2013) |
308 308
| UNC5B | 2 | (Hübschmann et al. 2021) |
309
-| UNC5C | 1 | \] |
310
-| UNC5D | 2 | \] |
311
-| USP7 | 1 | \] |
312
-| VPS13B | 1 | \] |
309
+| UNC5C | 1 | |
310
+| UNC5D | 2 | |
311
+| USP7 | 1 | |
312
+| VPS13B | 1 | |
313 313
| WAC | 2 | (Reddy et al. 2017) |
314 314
| WDFY3 | 2 | (Morin et al. 2013) |
315 315
| WEE1 | 1 | (Schmitz et al. 2018) |
316 316
| WNK1 | 2 | (Hübschmann et al. 2021) |
317
-| XBP1 | 2 | \] |
317
+| XBP1 | 2 | |
318 318
| XPO1 | 1 | (Mareschal et al. 2016) |
319 319
| YY1 | 2 | (Reddy et al. 2017) |
320 320
| ZBTB7A | 2 | (Reddy et al. 2017) |
FL_genes_with_bib.md
... ...
@@ -60,8 +60,8 @@
60 60
| HIST1H3B | 1 | (Zhang et al. 2013) |
61 61
| HIST1H3G | 1 | (Krysiak et al. 2017) |
62 62
| HIST1H3I | 2 | (Krysiak et al. 2017) |
63
-| HLA-B | 2 | \] |
64
-| HNRNPD | 2 | \] |
63
+| HLA-B | 2 | |
64
+| HNRNPD | 2 | |
65 65
| HVCN1 | 1 | (Krysiak et al. 2017) |
66 66
| IGLL5 | 2 | (Russler-Germain et al. 2023) |
67 67
| IRF4 | 1 | (Morin et al. 2011) |
... ...
@@ -94,7 +94,7 @@
94 94
| POU2F2 | 1 | (Krysiak et al. 2017; Zhang et al. 2013) |
95 95
| PPP4C | 2 | (Hübschmann et al. 2021) |
96 96
| PRKDC | 2 | (Hübschmann et al. 2021; Schmitz et al. 2018) |
97
-| PTPRD | 1 | \] |
97
+| PTPRD | 1 | |
98 98
| PZP | 2 | (Russler-Germain et al. 2023) |
99 99
| RBM6 | 2 | (Hübschmann et al. 2021) |
100 100
| RRAGC | 1 | (Okosun et al. 2016) |