MZL_genes.md
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## Tier 1, high-confidence MZL genes
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-### *42 total*
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+[[include:pages/MZL_Tier1]]
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|Gene|Summary| First MZL study | Other entities | QC result |
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|:-:|:--:|:-:|:-|:-|
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|[SOCS1](SOCS1)|MZL Tier 1 ||[@drevalGeneticSubdivisionsFollicular2023; @morinFrequentMutationHistonemodifying2011; @wenigerMutationsTumorSuppressor2006]||
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|[SPEN](SPEN)|MZL Tier 1 |[Rossi et al](papers/rossiCodingGenomeSplenic2012)|[@albuquerqueEnhancingKnowledgeDiscovery2017; @sarkozyMutationalLandscapeGray2021]||
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|[STAT6](STAT6)|MZL Tier 1 ||Ritz et al||
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-|[TBL1XR1](TBL1XR1)|Tier 1|[Rossi et al](papers/rossiCodingGenomeSplenic2012)|[@drevalGeneticSubdivisionsFollicular2023; @lohrDiscoveryPrioritizationSomatic2012]||
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-|[TNFAIP3](TNFAIP3)|Tier 1 |[Rossi et al](papers/rossiAlterationBIRC3Multiple2011)|[@compagnoMutationsMultipleGenes2009; @drevalGeneticSubdivisionsFollicular2023; @schmitzTNFAIP3A20Tumor2009]||
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-|[TNFRSF14](TNFRSF14)|Tier 1 |[Spina et al](papers/spinaGeneticsNodalMarginal2016)|[@cheungAcquiredTNFRSF14Mutations2010; @morinFrequentMutationHistonemodifying2011]||
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-|[TP53](TP53)|Tier 1 |[Rossi et al](papers/rossiCodingGenomeSplenic2012)|[@beaLandscapeSomaticMutations2013; @morinFrequentMutationHistonemodifying2011; @tiacciPervasiveMutationsJAKSTAT2018; @wildaInactivationARFMDM2p53Pathway2004]||
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-|[TRAF3](TRAF3)|Tier 1 |[Rossi et al](papers/rossiAlterationBIRC3Multiple2011)|[@ottoGeneticLesionsTRAF32012; @pasqualucciAnalysisCodingGenome2011]||
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+|[TBL1XR1](TBL1XR1)|MZL Tier 1|[Rossi et al](papers/rossiCodingGenomeSplenic2012)|[@drevalGeneticSubdivisionsFollicular2023; @lohrDiscoveryPrioritizationSomatic2012]||
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+|[TNFAIP3](TNFAIP3)|MZL Tier 1 |[Rossi et al](papers/rossiAlterationBIRC3Multiple2011)|[@compagnoMutationsMultipleGenes2009; @drevalGeneticSubdivisionsFollicular2023; @schmitzTNFAIP3A20Tumor2009]||
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+|[TNFRSF14](TNFRSF14)|MZL Tier 1 |[Spina et al](papers/spinaGeneticsNodalMarginal2016)|[@cheungAcquiredTNFRSF14Mutations2010; @morinFrequentMutationHistonemodifying2011]||
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+|[TP53](TP53)|MZL Tier 1 |[Rossi et al](papers/rossiCodingGenomeSplenic2012)|[@beaLandscapeSomaticMutations2013; @morinFrequentMutationHistonemodifying2011; @tiacciPervasiveMutationsJAKSTAT2018; @wildaInactivationARFMDM2p53Pathway2004]||
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+|[TRAF3](TRAF3)|MZL Tier 1 |[Rossi et al](papers/rossiAlterationBIRC3Multiple2011)|[@ottoGeneticLesionsTRAF32012; @pasqualucciAnalysisCodingGenome2011]||
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## Tier 2, low-confidence MZL genes
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-### *74 total*
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+[[include:pages/MZL_Tier2]]
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|Gene|Summary| First MZL study | Other entities | QC result |
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|:-:|:--:|:-:|:-|:-|