DLBCL_genes.md
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## Tier 1 DLBCL genes
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-### *124 total*
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+### *125 total*
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|Gene|Summary| First DLBCL study | Other entities | QC result |
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|:-:|:-:|:-:|:-|:-|
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|[CD79B](CD79B)|Tier 1 GE[@morinFrequentMutationHistonemodifying2011], FE[@davisChronicActiveBcellreceptor2010]|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)|[@paneaWholeGenomeLandscape2019]||
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|[CD83](CD83)|Tier 1 GE[@morinMutationalStructuralAnalysis2013]|[Morin et al](papers/morinMutationalStructuralAnalysis2013)|[@dunsCharacterizationDLBCLPMBL2021b; @paneaWholeGenomeLandscape2019; @russler-germainMutationsAssociatedProgression2023b]||
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|[CDKN2A](CDKN2A)|Tier 1 GE[@morinMutationalStructuralAnalysis2013], CE[@jardinDiffuseLargeBcell2010a]|[Morin et al](papers/morinMutationalStructuralAnalysis2013)|[@grandeGenomewideDiscoverySomatic2019; @spinaGeneticsNodalMarginal2016b]||
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+|[CIITA](CIITA)|Tier 1 GE[@morinFrequentMutationHistonemodifying2011], CE[@guoSGK1MutationStatus2022b]|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)|[@mottokGenomicAlterationsCIITA2015b]||
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|[CREBBP](CREBBP)|Tier 1 GE[@pasqualucciInactivatingMutationsAcetyltransferase2011a], FE[@pasqualucciInactivatingMutationsAcetyltransferase2011a]|[Pasqualucci et al](papers/pasqualucciInactivatingMutationsAcetyltransferase2011a)|[@dunsCharacterizationDLBCLPMBL2021b; @loveGeneticLandscapeMutations2012; @parryWholeExomeSequencing2013]||
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|[CXCR4](CXCR4)|Tier 1 GE[@khodabakhshiRecurrentTargetsAberrant2012]|[Khodabakhshi et al](papers/khodabakhshiRecurrentTargetsAberrant2012)|[@krysiakRecurrentSomaticMutations2017b; @paneaWholeGenomeLandscape2019]||
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|[CXCR5](CXCR5)|Tier 1 GE[@schmitzGeneticsPathogenesisDiffuse2018a]|[Schmitz et al](papers/schmitzGeneticsPathogenesisDiffuse2018a)|[@mottokIntegrativeGenomicAnalysis2019b]||
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## Tier 2 DLBCL genes
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-### *181 total*
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+### *180 total*
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|Gene|Summary| First DLBCL study | Other entities | QC result |
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|:-:|:-:|:-:|:-|:-|
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|[CD74](CD74)|Tier 2 GE[@arthurGenomewideDiscoverySomatic2018]|[Arthur et al](papers/arthurGenomewideDiscoverySomatic2018)|||
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|[CDH9](CDH9)|Tier 2 GE[@morinMutationalStructuralAnalysis2013]|[Morin et al](papers/morinMutationalStructuralAnalysis2013)||PASS|
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|[CEP164](CEP164)|Tier 2 GE[@albuquerqueEnhancingKnowledgeDiscovery2017a]|[Albuquerque et al](papers/albuquerqueEnhancingKnowledgeDiscovery2017a)|||
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-|[CIITA](CIITA)|Tier 2 GE[@morinFrequentMutationHistonemodifying2011], CE[@guoSGK1MutationStatus2022b]|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)|[@mottokGenomicAlterationsCIITA2015b]||
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|[CNOT2](CNOT2)|Tier 2 GE[@hubschmannMutationalMechanismsShaping2021b]|[Hubschmann et al](papers/hubschmannMutationalMechanismsShaping2021b)||PASS|
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|[CNTNAP5](CNTNAP5)|Tier 2 GE[@morinMutationalStructuralAnalysis2013]|[Morin et al](papers/morinMutationalStructuralAnalysis2013)||PASS|
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|[COQ7](COQ7)|Tier 2 GE[@chapuyMolecularSubtypesDiffuse2018b]|[Chapuy et al](papers/chapuyMolecularSubtypesDiffuse2018b)||PASS|