5d7f53fa2e5538152c26ca2743311c39fac87c5c
DLBCL_genes.md
| ... | ... | @@ -11,7 +11,7 @@ link-citations: true |
| 11 | 11 | |
| 12 | 12 | ## Tier 1 DLBCL genes |
| 13 | 13 | |
| 14 | -### *124 total* |
|
| 14 | +### *125 total* |
|
| 15 | 15 | |
| 16 | 16 | |Gene|Summary| First DLBCL study | Other entities | QC result | |
| 17 | 17 | |:-:|:-:|:-:|:-|:-| |
| ... | ... | @@ -36,6 +36,7 @@ link-citations: true |
| 36 | 36 | |[CD79B](CD79B)|Tier 1 GE[@morinFrequentMutationHistonemodifying2011], FE[@davisChronicActiveBcellreceptor2010]|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)|[@paneaWholeGenomeLandscape2019]|| |
| 37 | 37 | |[CD83](CD83)|Tier 1 GE[@morinMutationalStructuralAnalysis2013]|[Morin et al](papers/morinMutationalStructuralAnalysis2013)|[@dunsCharacterizationDLBCLPMBL2021b; @paneaWholeGenomeLandscape2019; @russler-germainMutationsAssociatedProgression2023b]|| |
| 38 | 38 | |[CDKN2A](CDKN2A)|Tier 1 GE[@morinMutationalStructuralAnalysis2013], CE[@jardinDiffuseLargeBcell2010a]|[Morin et al](papers/morinMutationalStructuralAnalysis2013)|[@grandeGenomewideDiscoverySomatic2019; @spinaGeneticsNodalMarginal2016b]|| |
| 39 | +|[CIITA](CIITA)|Tier 1 GE[@morinFrequentMutationHistonemodifying2011], CE[@guoSGK1MutationStatus2022b]|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)|[@mottokGenomicAlterationsCIITA2015b]|| |
|
| 39 | 40 | |[CREBBP](CREBBP)|Tier 1 GE[@pasqualucciInactivatingMutationsAcetyltransferase2011a], FE[@pasqualucciInactivatingMutationsAcetyltransferase2011a]|[Pasqualucci et al](papers/pasqualucciInactivatingMutationsAcetyltransferase2011a)|[@dunsCharacterizationDLBCLPMBL2021b; @loveGeneticLandscapeMutations2012; @parryWholeExomeSequencing2013]|| |
| 40 | 41 | |[CXCR4](CXCR4)|Tier 1 GE[@khodabakhshiRecurrentTargetsAberrant2012]|[Khodabakhshi et al](papers/khodabakhshiRecurrentTargetsAberrant2012)|[@krysiakRecurrentSomaticMutations2017b; @paneaWholeGenomeLandscape2019]|| |
| 41 | 42 | |[CXCR5](CXCR5)|Tier 1 GE[@schmitzGeneticsPathogenesisDiffuse2018a]|[Schmitz et al](papers/schmitzGeneticsPathogenesisDiffuse2018a)|[@mottokIntegrativeGenomicAnalysis2019b]|| |
| ... | ... | @@ -142,7 +143,7 @@ link-citations: true |
| 142 | 143 | |
| 143 | 144 | ## Tier 2 DLBCL genes |
| 144 | 145 | |
| 145 | -### *181 total* |
|
| 146 | +### *180 total* |
|
| 146 | 147 | |
| 147 | 148 | |Gene|Summary| First DLBCL study | Other entities | QC result | |
| 148 | 149 | |:-:|:-:|:-:|:-|:-| |
| ... | ... | @@ -170,7 +171,6 @@ link-citations: true |
| 170 | 171 | |[CD74](CD74)|Tier 2 GE[@arthurGenomewideDiscoverySomatic2018]|[Arthur et al](papers/arthurGenomewideDiscoverySomatic2018)||| |
| 171 | 172 | |[CDH9](CDH9)|Tier 2 GE[@morinMutationalStructuralAnalysis2013]|[Morin et al](papers/morinMutationalStructuralAnalysis2013)||PASS| |
| 172 | 173 | |[CEP164](CEP164)|Tier 2 GE[@albuquerqueEnhancingKnowledgeDiscovery2017a]|[Albuquerque et al](papers/albuquerqueEnhancingKnowledgeDiscovery2017a)||| |
| 173 | -|[CIITA](CIITA)|Tier 2 GE[@morinFrequentMutationHistonemodifying2011], CE[@guoSGK1MutationStatus2022b]|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)|[@mottokGenomicAlterationsCIITA2015b]|| |
|
| 174 | 174 | |[CNOT2](CNOT2)|Tier 2 GE[@hubschmannMutationalMechanismsShaping2021b]|[Hubschmann et al](papers/hubschmannMutationalMechanismsShaping2021b)||PASS| |
| 175 | 175 | |[CNTNAP5](CNTNAP5)|Tier 2 GE[@morinMutationalStructuralAnalysis2013]|[Morin et al](papers/morinMutationalStructuralAnalysis2013)||PASS| |
| 176 | 176 | |[COQ7](COQ7)|Tier 2 GE[@chapuyMolecularSubtypesDiffuse2018b]|[Chapuy et al](papers/chapuyMolecularSubtypesDiffuse2018b)||PASS| |