Changes in 5e3d2e2: cleanup

				config1.json
			
          @@ -1,12 +0,0 @@

          -{

          -  "theme": "base",

          -  "themeVariables": {

          -    "fontSize": "33px"

          -  },

          -  "sankey": {

          -    "height": 1000,

          -    "width": 800,

          -    "showValues": false,

          -    "linkColor": "target"

          -  }

          -}

				config2.json
			
          @@ -1,12 +0,0 @@

          -{

          -  "theme": "base",

          -  "themeVariables": {

          -    "fontSize": "33px"

          -  },

          -  "sankey": {

          -    "height": 700,

          -    "width": 800,

          -    "showValues": false,

          -    "linkColor": "target"

          -  }

          -}

				test_with_bib.md
			
          @@ -1,240 +0,0 @@

          -|   Gene    |           Reference           |

          -|:---------:|:-----------------------------:|

          -|   ABL2    | (Russler-Germain et al. 2023) |

          -| HIST1H2BD |     (Krysiak et al. 2017)     |

          -|   CPNE8   |   (Hübschmann et al. 2021)    |

          -| HIST1H2AG |     (Krysiak et al. 2017)     |

          -|   BIRC6   |                               |

          -|   CXCR4   |     (Krysiak et al. 2017)     |

          -|   STAT6   |     (Yildiz et al. 2015)      |

          -|  CARD11   |      (Morin et al. 2011)      |

          -|   ITPKB   |                               |

          -|   ACTG1   |   (Hübschmann et al. 2021)    |

          -| HIST1H2BC |     (Krysiak et al. 2017)     |

          -|  POU2AF1  |     (Krysiak et al. 2017)     |

          -|   SESN1   |                               |

          -|   CILP    | (Russler-Germain et al. 2023) |

          -|   MEF2C   |                               |

          -|   PRKDC   |   (Hübschmann et al. 2021)    |

          -|   TP53    |      (Morin et al. 2011)      |

          -|   KLF2    |                               |

          -|  MYCBP2   |   (Hübschmann et al. 2021)    |

          -|   BCL7A   |     (Krysiak et al. 2017)     |

          -|    B2M    |      (Morin et al. 2011)      |

          -|   VMA21   |   (Hübschmann et al. 2021)    |

          -|   BCL10   | (Russler-Germain et al. 2023) |

          -|   DUSP2   |                               |

          -|  MAP2K1   |   (Louissaint et al. 2016)    |

          -|   IGLL5   | (Russler-Germain et al. 2023) |

          -|  ZC3H12A  |                               |

          -|    JUP    |   (Hübschmann et al. 2021)    |

          -|  TMEM30A  |      (Morin et al. 2011)      |

          -| ATP6V1B2  |     (Okosun et al. 2016)      |

          -|   SOCS1   |                               |

          -|  CYP2A6   | (Russler-Germain et al. 2023) |

          -| HIST1H3B  |                               |

          -|   SRRM2   | (Russler-Germain et al. 2023) |

          -| HIST1H3G  |     (Krysiak et al. 2017)     |

          -| HIST1H2AM |     (Krysiak et al. 2017)     |

          -|   GNA13   |      (Morin et al. 2011)      |

          -| HIST1H1B  |     (Krysiak et al. 2017)     |

          -|   PPP4C   |   (Hübschmann et al. 2021)    |

          -|   MYD88   |                               |

          -|   PTPRD   |                               |

          -|  EEF1A1   |   (Hübschmann et al. 2021)    |

          -|   CCND3   |      (Morin et al. 2011)      |

          -|  LAPTM5   |   (Hübschmann et al. 2021)    |

          -|  TNFAIP3  |                               |

          -| HIST1H1C  |      (Morin et al. 2011)      |

          -|   GBP7    | (Russler-Germain et al. 2023) |

          -|   XIRP2   | (Russler-Germain et al. 2023) |

          -|   GRM6    | (Russler-Germain et al. 2023) |

          -|  CREBBP   |   (Pasqualucci et al. 2011)   |

          -|   SGK1    |      (Morin et al. 2011)      |

          -|   CD79B   |                               |

          -|  ATP6AP1  |     (Okosun et al. 2016)      |

          -|  HNRNPD   |                               |

          -|   OR8H2   | (Russler-Germain et al. 2023) |

          -|   IRF8    |      (Morin et al. 2011)      |

          -|  ZNF608   |     (Krysiak et al. 2017)     |

          -|  SHROOM3  | (Russler-Germain et al. 2023) |

          -|   HVCN1   |     (Krysiak et al. 2017)     |

          -|  TBL1XR1  |                               |

          -|   CD83    | (Russler-Germain et al. 2023) |

          -|   DTX1    |                               |

          -|   KLHL6   |      (Morin et al. 2011)      |

          -|   EBF1    |                               |

          -|   CD70    | (Russler-Germain et al. 2023) |

          -|   IRF4    |                               |

          -|   STAB2   | (Russler-Germain et al. 2023) |

          -| TNFRSF14  |     (Cheung et al. 2010)      |

          -|    FAS    |                               |

          -|    BTK    |     (Krysiak et al. 2017)     |

          -|   FOXO1   |      (Morin et al. 2011)      |

          -|  SMARCA4  |     (Krysiak et al. 2017)     |

          -|  POU2F2   |     (Krysiak et al. 2017)     |

          -|   RRAGC   |                               |

          -|  KIR3DL1  | (Russler-Germain et al. 2023) |

          -| HIST1H1D  |     (Krysiak et al. 2017)     |

          -|   BCL2    |      (Morin et al. 2011)      |

          -|   EGR1    |     (Krysiak et al. 2017)     |

          -|   ACTB    |                               |

          -|    PZP    | (Russler-Germain et al. 2023) |

          -|   GNAI2   |                               |

          -|   DHX15   |   (Hübschmann et al. 2021)    |

          -|  ATP6V1A  |   (Hübschmann et al. 2021)    |

          -|   PDS5B   |   (Hübschmann et al. 2021)    |

          -|   BCL6    |                               |

          -| HIST1H2BM |     (Krysiak et al. 2017)     |

          -|   PIM1    |                               |

          -|   MEF2B   |      (Morin et al. 2011)      |

          -|   EZH2    |      (Morin et al. 2010)      |

          -|  MAGEC1   | (Russler-Germain et al. 2023) |

          -|   KMT2D   |      (Morin et al. 2011)      |

          -|  ARID1A   |     (Krysiak et al. 2017)     |

          -|  MAP7D1   | (Russler-Germain et al. 2023) |

          -|   DDX3X   |                               |

          -|   MGEA5   |   (Hübschmann et al. 2021)    |

          -|   MKI67   | (Russler-Germain et al. 2023) |

          -| HIST1H3I  |     (Krysiak et al. 2017)     |

          -| CCDC42BPB |   (Hübschmann et al. 2021)    |

          -| HIST1H1E  |     (Krysiak et al. 2017)     |

          -|  TMSB4X   |                               |

          -|   TPP1    |   (Hübschmann et al. 2021)    |

          -|   HLA-B   |                               |

          -|   PCLO    |                               |

          -|   FZR1    |   (Hübschmann et al. 2021)    |

          -|   S1PR2   |                               |

          -|   BTG1    |                               |

          -|   BTG2    |      (Morin et al. 2011)      |

          -| HIST1H2BG |     (Krysiak et al. 2017)     |

          -|    LTB    |                               |

          -|   EP300   |   (Pasqualucci et al. 2011)   |

          -|   CTSS    |     (Bararia et al. 2020)     |

          -| HIST1H2AC |     (Krysiak et al. 2017)     |

          -|  NFKBIA   | (Russler-Germain et al. 2023) |

          -|   P2RY8   |                               |

          -|   RBM6    |   (Hübschmann et al. 2021)    |

          -|    MYC    |                               |

          -

          -<div id="refs" class="references csl-bib-body hanging-indent">

          -

          -<div id="ref-barariaCathepsinAlterationsInduce2020c" class="csl-entry">

          -

          -Bararia, Deepak, Johannes A. Hildebrand, Sebastian Stolz, Sarah Haebe,

          -Stefan Alig, Christopher P. Trevisani, Francisco Osorio-Barrios, et al.

          -2020. “Cathepsin S Alterations Induce a Tumor-Promoting Immune

          -Microenvironment in Follicular Lymphoma.” *Cell Reports* 31 (5): 107522.

          -<https://doi.org/10.1016/j.celrep.2020.107522>.

          -

          -</div>

          -

          -<div id="ref-cheungAcquiredTNFRSF14Mutations2010a" class="csl-entry">

          -

          -Cheung, K.-John J., Nathalie A. Johnson, Joslynn G. Affleck, Tesa

          -Severson, Christian Steidl, Susana Ben-Neriah, Jacqueline Schein, et al.

          -2010. “Acquired TNFRSF14 Mutations in Follicular Lymphoma Are Associated

          -with Worse Prognosis.” *Cancer Research* 70 (22): 9166–74.

          -<https://doi.org/10.1158/0008-5472.CAN-10-2460>.

          -

          -</div>

          -

          -<div id="ref-hubschmannMutationalMechanismsShaping2021b"

          -class="csl-entry">

          -

          -Hübschmann, Daniel, Kortine Kleinheinz, Rabea Wagener, Stephan H.

          -Bernhart, Cristina López, Umut H. Toprak, Stephanie Sungalee, et al.

          -2021. “Mutational Mechanisms Shaping the Coding and Noncoding Genome of

          -Germinal Center Derived <span class="nocase">B-cell</span> Lymphomas.”

          -*Leukemia* 35 (7): 2002–16.

          -<https://doi.org/10.1038/s41375-021-01251-z>.

          -

          -</div>

          -

          -<div id="ref-krysiakRecurrentSomaticMutations2017b" class="csl-entry">

          -

          -Krysiak, Kilannin, Felicia Gomez, Brian S. White, Matthew Matlock,

          -Christopher A. Miller, Lee Trani, Catrina C. Fronick, et al. 2017.

          -“Recurrent Somatic Mutations Affecting <span

          -class="nocase">B-cell</span> Receptor Signaling Pathway Genes in

          -Follicular Lymphoma.” *Blood* 129 (4): 473–83.

          -<https://doi.org/10.1182/blood-2016-07-729954>.

          -

          -</div>

          -

          -<div id="ref-louissaintPediatrictypeNodalFollicular2016a"

          -class="csl-entry">

          -

          -Louissaint, Abner, Kristian T. Schafernak, Julia T. Geyer, Alexandra E.

          -Kovach, Mahmoud Ghandi, Dita Gratzinger, Christine G. Roth, et al. 2016.

          -“Pediatric-Type Nodal Follicular Lymphoma: A Biologically Distinct

          -Lymphoma with Frequent MAPK Pathway Mutations.” *Blood* 128 (8):

          -1093–1100. <https://doi.org/10.1182/blood-2015-12-682591>.

          -

          -</div>

          -

          -<div id="ref-morinSomaticMutationsAltering2010a" class="csl-entry">

          -

          -Morin, Ryan D., Nathalie A. Johnson, Tesa M. Severson, Andrew J.

          -Mungall, Jianghong An, Rodrigo Goya, Jessica E. Paul, et al. 2010.

          -“Somatic Mutations Altering EZH2 (Tyr641) in Follicular and Diffuse

          -Large <span class="nocase">B-cell</span> Lymphomas of Germinal-Center

          -Origin.” *Nature Genetics* 42 (2): 181–85.

          -<https://doi.org/10.1038/ng.518>.

          -

          -</div>

          -

          -<div id="ref-morinFrequentMutationHistonemodifying2011"

          -class="csl-entry">

          -

          -Morin, Ryan D., Maria Mendez-Lago, Andrew J. Mungall, Rodrigo Goya,

          -Karen L. Mungall, Richard D. Corbett, Nathalie A. Johnson, et al. 2011.

          -“Frequent Mutation of Histone-Modifying Genes in Non-Hodgkin Lymphoma.”

          -*Nature* 476 (7360): 298–303. <https://doi.org/10.1038/nature10351>.

          -

          -</div>

          -

          -<div id="ref-okosunRecurrentMTORC1activatingRRAGC2016a"

          -class="csl-entry">

          -

          -Okosun, Jessica, Rachel L. Wolfson, Jun Wang, Shamzah Araf, Lucy

          -Wilkins, Brian M. Castellano, Leire Escudero-Ibarz, et al. 2016.

          -“Recurrent <span class="nocase">mTORC1-activating RRAGC</span> Mutations

          -in Follicular Lymphoma.” *Nature Genetics* 48 (2): 183–88.

          -<https://doi.org/10.1038/ng.3473>.

          -

          -</div>

          -

          -<div id="ref-pasqualucciInactivatingMutationsAcetyltransferase2011a"

          -class="csl-entry">

          -

          -Pasqualucci, Laura, David Dominguez-Sola, Annalisa Chiarenza, Giulia

          -Fabbri, Adina Grunn, Vladimir Trifonov, Lawryn H. Kasper, et al. 2011.

          -“Inactivating Mutations of Acetyltransferase Genes in <span

          -class="nocase">B-cell</span> Lymphoma.” *Nature* 471 (7337): 189–95.

          -<https://doi.org/10.1038/nature09730>.

          -

          -</div>

          -

          -<div id="ref-russler-germainMutationsAssociatedProgression2023b"

          -class="csl-entry">

          -

          -Russler-Germain, David A., Kilannin Krysiak, Cody A. Ramirez, Matthew

          -Mosior, Marcus P. Watkins, Felicia Gomez, Zachary L. Skidmore, et al.

          -2023. “Mutations Associated with Progression in Follicular Lymphoma

          -Predict Inferior Outcomes at Diagnosis: Alliance A151303.” *Blood

          -Advances* 7: 5524–39.

          -<https://doi.org/10.1182/bloodadvances.2023010779>.

          -

          -</div>

          -

          -<div id="ref-yildizActivatingSTAT6Mutations2015c" class="csl-entry">

          -

          -Yildiz, Mehmet, Hongxiu Li, Denzil Bernard, Nisar A. Amin, Peter

          -Ouillette, Siân Jones, Kamlai Saiya-Cork, et al. 2015. “Activating STAT6

          -Mutations in Follicular Lymphoma.” *Blood* 125 (4): 668–79.

          -<https://doi.org/10.1182/blood-2014-06-582650>.

          -

          -</div>

          -

          -</div>

				tier1_pmbl_hl_gz.md
			
          @@ -1,76 +0,0 @@

          -| Category | Gene | Details | Mutation frequency | Static view (Gene) | Static view (Protein) | Comment |

          -| :---: | :----: | :---: | :---: | :---: |

          -|:--:|[ACTB](ACTB)|:-:|:-:|

          -|1|[ARID1A](ARID1A)||[view](images/proteinpaint/ARID1A.svg)|[view](images/proteinpaint/ARID1A_NM_006015.svg)|

          -|1|[ARID5B](ARID5B)||[view](images/proteinpaint/ARID5B.svg)|[view](images/proteinpaint/ARID5B_NM_032199.svg)|

          -|1|[B2M](B2M)||[view](images/proteinpaint/B2M.svg)|[view](images/proteinpaint/B2M_NM_004048.svg)|

          -|1|[BIRC6](BIRC6)||[view](images/proteinpaint/BIRC6.svg)|[view](images/proteinpaint/BIRC6_NM_016252.svg)|

          -|1-a|[BTG1](BTG1)||[view](images/proteinpaint/BTG1.svg)|[view](images/proteinpaint/BTG1_NM_001731.svg)|

          -|1|[CARD11](CARD11)||[view](images/proteinpaint/CARD11.svg)|[view](images/proteinpaint/CARD11_NM_032415.svg)|

          -|1|[CD58](CD58)||[view](images/proteinpaint/CD58.svg)|[view](images/proteinpaint/CD58_NM_001779.svg)|

          -|1-a|[CD83](CD83)||[view](images/proteinpaint/CD83.svg)|[view](images/proteinpaint/CD83_NM_004233.svg)|

          -|1|[CDKN2A](CDKN2A)||[view](images/proteinpaint/CDKN2A.svg)|[view](images/proteinpaint/CDKN2A_NM_000077.svg)|

          -|1|[CHD8](CHD8)||[view](images/proteinpaint/CHD8.svg)|[view](images/proteinpaint/CHD8_NM_001170629.svg)|

          -|1|[CREBBP](CREBBP)||[view](images/proteinpaint/CREBBP.svg)|[view](images/proteinpaint/CREBBP_NM_004380.svg)|

          -|1|[CSF2RB](CSF2RB)||[LOAD](https://morinlab.github.io/LLMPP/GAMBL/CSF2RB.html)|[LOAD](https://morinlab.github.io/LLMPP/GAMBL/CSF2RB_protein.html)|

          -|1|[DDX3X](DDX3X)||[view](images/proteinpaint/DDX3X.svg)|[view](images/proteinpaint/DDX3X_NM_001356.svg)|

          -|1-a|[DTX1](DTX1)||[view](images/proteinpaint/DTX1.svg)|[view](images/proteinpaint/DTX1_NM_004416.svg)|

          -|1-a|[DUSP2](DUSP2)||[view](images/proteinpaint/DUSP2.svg)|[view](images/proteinpaint/DUSP2_NM_004418.svg)|

          -|1-a|[EBF1](EBF1)||[view](images/proteinpaint/EBF1.svg)|[view](images/proteinpaint/EBF1_NM_024007.svg)|

          -|1|[EP300](EP300)||[view](images/proteinpaint/EP300.svg)|[view](images/proteinpaint/EP300_NM_001429.svg)|

          -|1-a|[ETS1](ETS1)||[view](images/proteinpaint/ETS1.svg)|[view](images/proteinpaint/ETS1_NM_001143820.svg)|

          -|1|[EWSR1](EWSR1)||[view](images/proteinpaint/EWSR1.svg)|[view](images/proteinpaint/EWSR1_NM_013986.svg)|

          -|1|[EZH2](EZH2)||[view](images/proteinpaint/EZH2.svg)|[view](images/proteinpaint/EZH2_NM_001203247.svg)|

          -|1|[FAS](FAS)||[view](images/proteinpaint/FAS.svg)|[view](images/proteinpaint/FAS_NM_000043.svg)|

          -|1|[FAT1](FAT1)||[LOAD](https://morinlab.github.io/LLMPP/GAMBL/FAT1.html)|[LOAD](https://morinlab.github.io/LLMPP/GAMBL/FAT1_protein.html)|

          -|1|[FAT4](FAT4)||[view](images/proteinpaint/FAT4.svg)|[view](images/proteinpaint/FAT4_NM_024582.svg)|

          -|1|[GNA13](GNA13)||[view](images/proteinpaint/GNA13.svg)|[view](images/proteinpaint/GNA13_NM_006572.svg)|

          -|1|[H1-2](H1-2)(HIST1H1C)||[LOAD](https://morinlab.github.io/LLMPP/GAMBL/H1-2.html)|[view](images/proteinpaint/HIST1H1C_NM_005319.svg)|

          -|1|[H1-3](H1-3)(HIST1H1D)||[LOAD](https://morinlab.github.io/LLMPP/GAMBL/H1-3.html)|[view](images/proteinpaint/HIST1H1D_NM_005320.svg)|

          -|1|[H1-4](H1-4)(HIST1H1E)||[LOAD](https://morinlab.github.io/LLMPP/GAMBL/H1-4.html)|[view](images/proteinpaint/HIST1H1E_NM_005321.svg)|

          -|1|[H1-5](H1-5)(HIST1H1B)||[LOAD](https://morinlab.github.io/LLMPP/GAMBL/H1-5.html)|[view](images/proteinpaint/HIST1H1B_NM_005322.svg)|

          -|1|[HLA-B](HLA-B)||[view](images/proteinpaint/HLA-B.svg)|[view](images/proteinpaint/HLA-B_NM_005514.svg)|

          -|1-a|[IL4R](IL4R)||[view](images/proteinpaint/IL4R.svg)|[view](images/proteinpaint/IL4R_NM_000418.svg)|

          -|1-a|[IRF8](IRF8)||[view](images/proteinpaint/IRF8.svg)|[view](images/proteinpaint/IRF8_NM_002163.svg)|

          -|1-a|[ITPKB](ITPKB)||[view](images/proteinpaint/ITPKB.svg)|[view](images/proteinpaint/ITPKB_NM_002221.svg)|

          -|1|[JAK1](JAK1)||[view](images/proteinpaint/JAK1.svg)|[view](images/proteinpaint/JAK1_NM_002227.svg)|

          -|1|[KMT2C](KMT2C)||[view](images/proteinpaint/KMT2C.svg)|[view](images/proteinpaint/KMT2C_NM_170606.svg)|

          -|1-a|[LTB](LTB)||[view](images/proteinpaint/LTB.svg)|[view](images/proteinpaint/LTB_NM_002341.svg)|

          -|1-a|[MS4A1](MS4A1)||[view](images/proteinpaint/MS4A1.svg)|[LOAD](https://morinlab.github.io/LLMPP/GAMBL/MS4A1_protein.html)|

          -|1|[NFKBIA](NFKBIA)||[view](images/proteinpaint/NFKBIA.svg)|[view](images/proteinpaint/NFKBIA_NM_020529.svg)|

          -|1|[NFKBIE](NFKBIE)||[view](images/proteinpaint/NFKBIE.svg)|[view](images/proteinpaint/NFKBIE_NM_004556.svg)|

          -|1-a|[OSBPL10](OSBPL10)||[view](images/proteinpaint/OSBPL10.svg)|[view](images/proteinpaint/OSBPL10_NM_017784.svg)|

          -|1|[P2RY8](P2RY8)||[view](images/proteinpaint/P2RY8.svg)|[view](images/proteinpaint/P2RY8_NM_178129.svg)|

          -|1|[PCLO](PCLO)||[view](images/proteinpaint/PCLO.svg)|[view](images/proteinpaint/PCLO_NM_033026.svg)|

          -|1|[PHIP](PHIP)||[LOAD](https://morinlab.github.io/LLMPP/GAMBL/PHIP.html)|[LOAD](https://morinlab.github.io/LLMPP/GAMBL/PHIP_protein.html)|

          -|1-a|[PIM1](PIM1)||[view](images/proteinpaint/PIM1.svg)|[view](images/proteinpaint/PIM1_NM_002648.svg)|

          -|1-a|[PIM2](PIM2)||[view](images/proteinpaint/PIM2.svg)|[view](images/proteinpaint/PIM2_NM_006875.svg)|

          -|1|[PRKDC](PRKDC)||[view](images/proteinpaint/PRKDC.svg)|[view](images/proteinpaint/PRKDC_NM_006904.svg)|

          -|1-a|[PTPN1](PTPN1)||[view](images/proteinpaint/PTPN1.svg)|[view](images/proteinpaint/PTPN1_NM_002827.svg)|

          -|1|[PTPRD](PTPRD)||[view](images/proteinpaint/PTPRD.svg)|[view](images/proteinpaint/PTPRD_NM_002839.svg)|

          -|1|[RHOA](RHOA)||[view](images/proteinpaint/RHOA.svg)|[view](images/proteinpaint/RHOA_NM_001664.svg)|

          -|1-a|[S1PR2](S1PR2)||[view](images/proteinpaint/S1PR2.svg)|[view](images/proteinpaint/S1PR2_NM_004230.svg)|

          -|1-a|[SGK1](SGK1)||[view](images/proteinpaint/SGK1.svg)|[view](images/proteinpaint/SGK1_NM_005627.svg)|

          -|1|[SIN3A](SIN3A)||[view](images/proteinpaint/SIN3A.svg)|[view](images/proteinpaint/SIN3A_NM_001145358.svg)|

          -|1|[SMARCA2](SMARCA2)||[LOAD](https://morinlab.github.io/LLMPP/GAMBL/SMARCA2.html)|[LOAD](https://morinlab.github.io/LLMPP/GAMBL/SMARCA2_protein.html)|

          -|1|[SMARCA4](SMARCA4)||[view](images/proteinpaint/SMARCA4.svg)|[view](images/proteinpaint/SMARCA4_NM_001128849.svg)|

          -|1-a|[SOCS1](SOCS1)||[view](images/proteinpaint/SOCS1.svg)|[view](images/proteinpaint/SOCS1_NM_003745.svg)|

          -|1|[SPEN](SPEN)||[view](images/proteinpaint/SPEN.svg)|[view](images/proteinpaint/SPEN_NM_015001.svg)|

          -|1|[STAT3](STAT3)||[view](images/proteinpaint/STAT3.svg)|[view](images/proteinpaint/STAT3_NM_139276.svg)|

          -|1|[STAT6](STAT6)||[view](images/proteinpaint/STAT6.svg)|[view](images/proteinpaint/STAT6_NM_003153.svg)|

          -|1|[TAP1](TAP1)||[view](images/proteinpaint/TAP1.svg)|[view](images/proteinpaint/TAP1_NM_000593.svg)|

          -|1|[TBL1XR1](TBL1XR1)||[view](images/proteinpaint/TBL1XR1.svg)|[view](images/proteinpaint/TBL1XR1_NM_024665.svg)|

          -|1|[TCF3](TCF3)||[view](images/proteinpaint/TCF3.svg)|[view](images/proteinpaint/TCF3_NM_003200.svg)|

          -|1|[TET3](TET3)||[LOAD](https://morinlab.github.io/LLMPP/GAMBL/TET3.html)|[LOAD](https://morinlab.github.io/LLMPP/GAMBL/TET3_protein.html)|

          -|1-a|[TMSB4X](TMSB4X)||[view](images/proteinpaint/TMSB4X.svg)|[view](images/proteinpaint/TMSB4X_NM_021109.svg)|

          -|1|[TNFAIP3](TNFAIP3)||[view](images/proteinpaint/TNFAIP3.svg)|[view](images/proteinpaint/TNFAIP3_NM_006290.svg)|

          -|1|[TNFRSF1B](TNFRSF1B)||[LOAD](https://morinlab.github.io/LLMPP/GAMBL/TNFRSF1B.html)|[LOAD](https://morinlab.github.io/LLMPP/GAMBL/TNFRSF1B_protein.html)|

          -|1|[TP53](TP53)||[view](images/proteinpaint/TP53.svg)|[view](images/proteinpaint/TP53_NM_000546.svg)|

          -|1|[TRAF3](TRAF3)||[view](images/proteinpaint/TRAF3.svg)|[view](images/proteinpaint/TRAF3_NM_145725.svg)|

          -|1|[UBE2A](UBE2A)||[view](images/proteinpaint/UBE2A.svg)|[view](images/proteinpaint/UBE2A_NM_003336.svg)|

          -|1|[UBR5](UBR5)||[view](images/proteinpaint/UBR5.svg)|[view](images/proteinpaint/UBR5_NM_015902.svg)|

          -|1|[UNC5C](UNC5C)||[view](images/proteinpaint/UNC5C.svg)|[view](images/proteinpaint/UNC5C_NM_003728.svg)|

          -|1|[VPS13B](VPS13B)||[view](images/proteinpaint/VPS13B.svg)|[view](images/proteinpaint/VPS13B_NM_152564.svg)|

          -|1-a|[WEE1](WEE1)||[view](images/proteinpaint/WEE1.svg)|[view](images/proteinpaint/WEE1_NM_003390.svg)|

          -|1|[XPO1](XPO1)||[view](images/proteinpaint/XPO1.svg)|[view](images/proteinpaint/XPO1_NM_003400.svg)|

          -|1-a|[ZFP36L1](ZFP36L1)||[view](images/proteinpaint/ZFP36L1.svg)|[view](images/proteinpaint/ZFP36L1_NM_004926.svg)|

				tier2_pmbl_hl_gz.md
			
          @@ -1,35 +0,0 @@

          -| Category | Gene | Details | Mutation frequency | Static view (Gene) | Static view (Protein) | Comment |

          -| :---: | :----: | :---: | :---: | :---: |

          -|:--:|[ACTG1](ACTG1)|:-:|:-:|

          -|2|[ADGRG6](ADGRG6)||[LOAD](https://morinlab.github.io/LLMPP/GAMBL/ADGRG6.html)|[LOAD](https://morinlab.github.io/LLMPP/GAMBL/ADGRG6_protein.html)|

          -|2|[AXDND1](AXDND1)||[LOAD](https://morinlab.github.io/LLMPP/GAMBL/AXDND1.html)|[LOAD](https://morinlab.github.io/LLMPP/GAMBL/AXDND1_protein.html)|

          -|2-a|[BCL7A](BCL7A)||[view](images/proteinpaint/BCL7A.svg)|[view](images/proteinpaint/BCL7A_NM_020993.svg)|

          -|2|[CCND3](CCND3)||[view](images/proteinpaint/CCND3.svg)|[view](images/proteinpaint/CCND3_NM_001760.svg)|

          -|2|[CDH5](CDH5)||[LOAD](https://morinlab.github.io/LLMPP/GAMBL/CDH5.html)|[LOAD](https://morinlab.github.io/LLMPP/GAMBL/CDH5_protein.html)|

          -|2|[CHD2](CHD2)||[LOAD](https://morinlab.github.io/LLMPP/GAMBL/CHD2.html)|[LOAD](https://morinlab.github.io/LLMPP/GAMBL/CHD2_protein.html)|

          -|2-a|[CIITA](CIITA)||[view](images/proteinpaint/CIITA.svg)|[view](images/proteinpaint/CIITA_NM_000246.svg)|

          -|2|[CISH](CISH)||[LOAD](https://morinlab.github.io/LLMPP/GAMBL/CISH.html)|[LOAD](https://morinlab.github.io/LLMPP/GAMBL/CISH_protein.html)|

          -|2|[DNAH12](DNAH12)||[LOAD](https://morinlab.github.io/LLMPP/GAMBL/DNAH12.html)|[LOAD](https://morinlab.github.io/LLMPP/GAMBL/DNAH12_protein.html)|

          -|2|[EEF1A1](EEF1A1)||[view](images/proteinpaint/EEF1A1.svg)|[view](images/proteinpaint/EEF1A1_NM_001402.svg)|

          -|2|[EGR1](EGR1)||[LOAD](https://morinlab.github.io/LLMPP/GAMBL/EGR1.html)|[LOAD](https://morinlab.github.io/LLMPP/GAMBL/EGR1_protein.html)|

          -|2|[HLA-A](HLA-A)||[view](images/proteinpaint/HLA-A.svg)|[view](images/proteinpaint/HLA-A_NM_002116.svg)|

          -|2|[HLA-C](HLA-C)||[view](images/proteinpaint/HLA-C.svg)|[view](images/proteinpaint/HLA-C_NM_002117.svg)|

          -|2-a|[IGLL5](IGLL5)||[view](images/proteinpaint/IGLL5.svg)|[view](images/proteinpaint/IGLL5_NM_001178126.svg)|

          -|2-a|[IRF4](IRF4)||[view](images/proteinpaint/IRF4.svg)|[view](images/proteinpaint/IRF4_NM_002460.svg)|

          -|2|[IKBKB](IKBKB)||[view](images/proteinpaint/IKBKB.svg)|[view](images/proteinpaint/IKBKB_NM_001556.svg)|

          -|2|[ITGB2](ITGB2)||[LOAD](https://morinlab.github.io/LLMPP/GAMBL/ITGB2.html)|[LOAD](https://morinlab.github.io/LLMPP/GAMBL/ITGB2_protein.html)|

          -|2-a|[KLF2](KLF2)||[view](images/proteinpaint/KLF2.svg)|[view](images/proteinpaint/KLF2_NM_016270.svg)|

          -|2|[KMT2D](KMT2D)||[view](images/proteinpaint/KMT2D.svg)|[view](images/proteinpaint/KMT2D_NM_003482.svg)|

          -|2|[LIMD2](LIMD2)||[LOAD](https://morinlab.github.io/LLMPP/GAMBL/LIMD2.html)|[LOAD](https://morinlab.github.io/LLMPP/GAMBL/LIMD2_protein.html)|

          -|2|[MYB](MYB)||[view](images/proteinpaint/MYB.svg)|[view](images/proteinpaint/MYB_NM_001130173.svg)|

          -|2|[NFKB2](NFKB2)||[view](images/proteinpaint/NFKB2.svg)|[view](images/proteinpaint/NFKB2_NM_001077494.svg)|

          -|2|[NSD2](NSD2)||[view](images/proteinpaint/NSD2.svg)|[view](images/proteinpaint/NSD2_NM_133330.svg)|

          -|2|[OR13C2](OR13C2)||[LOAD](https://morinlab.github.io/LLMPP/GAMBL/OR13C2.html)|[LOAD](https://morinlab.github.io/LLMPP/GAMBL/OR13C2_protein.html)|

          -|2|[PCDH7](PCDH7)||[LOAD](https://morinlab.github.io/LLMPP/GAMBL/PCDH7.html)|[LOAD](https://morinlab.github.io/LLMPP/GAMBL/PCDH7_protein.html)|

          -|2|[PCBP1](PCBP1)||[view](images/proteinpaint/PCBP1.svg)|[view](images/proteinpaint/PCBP1_NM_006196.svg)|

          -|2|[RDH12](RDH12)||[LOAD](https://morinlab.github.io/LLMPP/GAMBL/RDH12.html)|[LOAD](https://morinlab.github.io/LLMPP/GAMBL/RDH12_protein.html)|

          -|2|[RBM38](RBM38)||[LOAD](https://morinlab.github.io/LLMPP/GAMBL/RBM38.html)|[LOAD](https://morinlab.github.io/LLMPP/GAMBL/RBM38_protein.html)|

          -|2|[SCN9A](SCN9A)||[LOAD](https://morinlab.github.io/LLMPP/GAMBL/SCN9A.html)|[LOAD](https://morinlab.github.io/LLMPP/GAMBL/SCN9A_protein.html)|

          -|2|[SMAD3](SMAD3)||[LOAD](https://morinlab.github.io/LLMPP/GAMBL/SMAD3.html)|[LOAD](https://morinlab.github.io/LLMPP/GAMBL/SMAD3_protein.html)|

          -|2|[STRAP](STRAP)||[LOAD](https://morinlab.github.io/LLMPP/GAMBL/STRAP.html)|[LOAD](https://morinlab.github.io/LLMPP/GAMBL/STRAP_protein.html)|

          -|2|[ZNF217](ZNF217)||[view](images/proteinpaint/ZNF217.svg)|[view](images/proteinpaint/ZNF217_NM_006526.svg)|

...	...	@@ -1,12 +0,0 @@
1		-{
2		- "theme": "base",
3		- "themeVariables": {
4		- "fontSize": "33px"
5		- },
6		- "sankey": {
7		- "height": 1000,
8		- "width": 800,
9		- "showValues": false,
10		- "linkColor": "target"
11		- }
12		-}

...	...	@@ -1,240 +0,0 @@
1		-\| Gene \| Reference \|
2		-\|:---------:\|:-----------------------------:\|
3		-\| ABL2 \| (Russler-Germain et al. 2023) \|
4		-\| HIST1H2BD \| (Krysiak et al. 2017) \|
5		-\| CPNE8 \| (Hübschmann et al. 2021) \|
6		-\| HIST1H2AG \| (Krysiak et al. 2017) \|
7		-\| BIRC6 \| \|
8		-\| CXCR4 \| (Krysiak et al. 2017) \|
9		-\| STAT6 \| (Yildiz et al. 2015) \|
10		-\| CARD11 \| (Morin et al. 2011) \|
11		-\| ITPKB \| \|
12		-\| ACTG1 \| (Hübschmann et al. 2021) \|
13		-\| HIST1H2BC \| (Krysiak et al. 2017) \|
14		-\| POU2AF1 \| (Krysiak et al. 2017) \|
15		-\| SESN1 \| \|
16		-\| CILP \| (Russler-Germain et al. 2023) \|
17		-\| MEF2C \| \|
18		-\| PRKDC \| (Hübschmann et al. 2021) \|
19		-\| TP53 \| (Morin et al. 2011) \|
20		-\| KLF2 \| \|
21		-\| MYCBP2 \| (Hübschmann et al. 2021) \|
22		-\| BCL7A \| (Krysiak et al. 2017) \|
23		-\| B2M \| (Morin et al. 2011) \|
24		-\| VMA21 \| (Hübschmann et al. 2021) \|
25		-\| BCL10 \| (Russler-Germain et al. 2023) \|
26		-\| DUSP2 \| \|
27		-\| MAP2K1 \| (Louissaint et al. 2016) \|
28		-\| IGLL5 \| (Russler-Germain et al. 2023) \|
29		-\| ZC3H12A \| \|
30		-\| JUP \| (Hübschmann et al. 2021) \|
31		-\| TMEM30A \| (Morin et al. 2011) \|
32		-\| ATP6V1B2 \| (Okosun et al. 2016) \|
33		-\| SOCS1 \| \|
34		-\| CYP2A6 \| (Russler-Germain et al. 2023) \|
35		-\| HIST1H3B \| \|
36		-\| SRRM2 \| (Russler-Germain et al. 2023) \|
37		-\| HIST1H3G \| (Krysiak et al. 2017) \|
38		-\| HIST1H2AM \| (Krysiak et al. 2017) \|
39		-\| GNA13 \| (Morin et al. 2011) \|
40		-\| HIST1H1B \| (Krysiak et al. 2017) \|
41		-\| PPP4C \| (Hübschmann et al. 2021) \|
42		-\| MYD88 \| \|
43		-\| PTPRD \| \|
44		-\| EEF1A1 \| (Hübschmann et al. 2021) \|
45		-\| CCND3 \| (Morin et al. 2011) \|
46		-\| LAPTM5 \| (Hübschmann et al. 2021) \|
47		-\| TNFAIP3 \| \|
48		-\| HIST1H1C \| (Morin et al. 2011) \|
49		-\| GBP7 \| (Russler-Germain et al. 2023) \|
50		-\| XIRP2 \| (Russler-Germain et al. 2023) \|
51		-\| GRM6 \| (Russler-Germain et al. 2023) \|
52		-\| CREBBP \| (Pasqualucci et al. 2011) \|
53		-\| SGK1 \| (Morin et al. 2011) \|
54		-\| CD79B \| \|
55		-\| ATP6AP1 \| (Okosun et al. 2016) \|
56		-\| HNRNPD \| \|
57		-\| OR8H2 \| (Russler-Germain et al. 2023) \|
58		-\| IRF8 \| (Morin et al. 2011) \|
59		-\| ZNF608 \| (Krysiak et al. 2017) \|
60		-\| SHROOM3 \| (Russler-Germain et al. 2023) \|
61		-\| HVCN1 \| (Krysiak et al. 2017) \|
62		-\| TBL1XR1 \| \|
63		-\| CD83 \| (Russler-Germain et al. 2023) \|
64		-\| DTX1 \| \|
65		-\| KLHL6 \| (Morin et al. 2011) \|
66		-\| EBF1 \| \|
67		-\| CD70 \| (Russler-Germain et al. 2023) \|
68		-\| IRF4 \| \|
69		-\| STAB2 \| (Russler-Germain et al. 2023) \|
70		-\| TNFRSF14 \| (Cheung et al. 2010) \|
71		-\| FAS \| \|
72		-\| BTK \| (Krysiak et al. 2017) \|
73		-\| FOXO1 \| (Morin et al. 2011) \|
74		-\| SMARCA4 \| (Krysiak et al. 2017) \|
75		-\| POU2F2 \| (Krysiak et al. 2017) \|
76		-\| RRAGC \| \|
77		-\| KIR3DL1 \| (Russler-Germain et al. 2023) \|
78		-\| HIST1H1D \| (Krysiak et al. 2017) \|
79		-\| BCL2 \| (Morin et al. 2011) \|
80		-\| EGR1 \| (Krysiak et al. 2017) \|
81		-\| ACTB \| \|
82		-\| PZP \| (Russler-Germain et al. 2023) \|
83		-\| GNAI2 \| \|
84		-\| DHX15 \| (Hübschmann et al. 2021) \|
85		-\| ATP6V1A \| (Hübschmann et al. 2021) \|
86		-\| PDS5B \| (Hübschmann et al. 2021) \|
87		-\| BCL6 \| \|
88		-\| HIST1H2BM \| (Krysiak et al. 2017) \|
89		-\| PIM1 \| \|
90		-\| MEF2B \| (Morin et al. 2011) \|
91		-\| EZH2 \| (Morin et al. 2010) \|
92		-\| MAGEC1 \| (Russler-Germain et al. 2023) \|
93		-\| KMT2D \| (Morin et al. 2011) \|
94		-\| ARID1A \| (Krysiak et al. 2017) \|
95		-\| MAP7D1 \| (Russler-Germain et al. 2023) \|
96		-\| DDX3X \| \|
97		-\| MGEA5 \| (Hübschmann et al. 2021) \|
98		-\| MKI67 \| (Russler-Germain et al. 2023) \|
99		-\| HIST1H3I \| (Krysiak et al. 2017) \|
100		-\| CCDC42BPB \| (Hübschmann et al. 2021) \|
101		-\| HIST1H1E \| (Krysiak et al. 2017) \|
102		-\| TMSB4X \| \|
103		-\| TPP1 \| (Hübschmann et al. 2021) \|
104		-\| HLA-B \| \|
105		-\| PCLO \| \|
106		-\| FZR1 \| (Hübschmann et al. 2021) \|
107		-\| S1PR2 \| \|
108		-\| BTG1 \| \|
109		-\| BTG2 \| (Morin et al. 2011) \|
110		-\| HIST1H2BG \| (Krysiak et al. 2017) \|
111		-\| LTB \| \|
112		-\| EP300 \| (Pasqualucci et al. 2011) \|
113		-\| CTSS \| (Bararia et al. 2020) \|
114		-\| HIST1H2AC \| (Krysiak et al. 2017) \|
115		-\| NFKBIA \| (Russler-Germain et al. 2023) \|
116		-\| P2RY8 \| \|
117		-\| RBM6 \| (Hübschmann et al. 2021) \|
118		-\| MYC \| \|
119		-
120		-<div id="refs" class="references csl-bib-body hanging-indent">
121		-
122		-<div id="ref-barariaCathepsinAlterationsInduce2020c" class="csl-entry">
123		-
124		-Bararia, Deepak, Johannes A. Hildebrand, Sebastian Stolz, Sarah Haebe,
125		-Stefan Alig, Christopher P. Trevisani, Francisco Osorio-Barrios, et al.
126		-2020. “Cathepsin S Alterations Induce a Tumor-Promoting Immune
127		-Microenvironment in Follicular Lymphoma.” Cell Reports 31 (5): 107522.
128		-<https://doi.org/10.1016/j.celrep.2020.107522>.
129		-
130		-</div>
131		-
132		-<div id="ref-cheungAcquiredTNFRSF14Mutations2010a" class="csl-entry">
133		-
134		-Cheung, K.-John J., Nathalie A. Johnson, Joslynn G. Affleck, Tesa
135		-Severson, Christian Steidl, Susana Ben-Neriah, Jacqueline Schein, et al.
136		-2010. “Acquired TNFRSF14 Mutations in Follicular Lymphoma Are Associated
137		-with Worse Prognosis.” Cancer Research 70 (22): 9166–74.
138		-<https://doi.org/10.1158/0008-5472.CAN-10-2460>.
139		-
140		-</div>
141		-
142		-<div id="ref-hubschmannMutationalMechanismsShaping2021b"
143		-class="csl-entry">
144		-
145		-Hübschmann, Daniel, Kortine Kleinheinz, Rabea Wagener, Stephan H.
146		-Bernhart, Cristina López, Umut H. Toprak, Stephanie Sungalee, et al.
147		-2021. “Mutational Mechanisms Shaping the Coding and Noncoding Genome of
148		-Germinal Center Derived <span class="nocase">B-cell</span> Lymphomas.”
149		-Leukemia 35 (7): 2002–16.
150		-<https://doi.org/10.1038/s41375-021-01251-z>.
151		-
152		-</div>
153		-
154		-<div id="ref-krysiakRecurrentSomaticMutations2017b" class="csl-entry">
155		-
156		-Krysiak, Kilannin, Felicia Gomez, Brian S. White, Matthew Matlock,
157		-Christopher A. Miller, Lee Trani, Catrina C. Fronick, et al. 2017.
158		-“Recurrent Somatic Mutations Affecting <span
159		-class="nocase">B-cell</span> Receptor Signaling Pathway Genes in
160		-Follicular Lymphoma.” Blood 129 (4): 473–83.
161		-<https://doi.org/10.1182/blood-2016-07-729954>.
162		-
163		-</div>
164		-
165		-<div id="ref-louissaintPediatrictypeNodalFollicular2016a"
166		-class="csl-entry">
167		-
168		-Louissaint, Abner, Kristian T. Schafernak, Julia T. Geyer, Alexandra E.
169		-Kovach, Mahmoud Ghandi, Dita Gratzinger, Christine G. Roth, et al. 2016.
170		-“Pediatric-Type Nodal Follicular Lymphoma: A Biologically Distinct
171		-Lymphoma with Frequent MAPK Pathway Mutations.” Blood 128 (8):
172		-1093–1100. <https://doi.org/10.1182/blood-2015-12-682591>.
173		-
174		-</div>
175		-
176		-<div id="ref-morinSomaticMutationsAltering2010a" class="csl-entry">
177		-
178		-Morin, Ryan D., Nathalie A. Johnson, Tesa M. Severson, Andrew J.
179		-Mungall, Jianghong An, Rodrigo Goya, Jessica E. Paul, et al. 2010.
180		-“Somatic Mutations Altering EZH2 (Tyr641) in Follicular and Diffuse
181		-Large <span class="nocase">B-cell</span> Lymphomas of Germinal-Center
182		-Origin.” Nature Genetics 42 (2): 181–85.
183		-<https://doi.org/10.1038/ng.518>.
184		-
185		-</div>
186		-
187		-<div id="ref-morinFrequentMutationHistonemodifying2011"
188		-class="csl-entry">
189		-
190		-Morin, Ryan D., Maria Mendez-Lago, Andrew J. Mungall, Rodrigo Goya,
191		-Karen L. Mungall, Richard D. Corbett, Nathalie A. Johnson, et al. 2011.
192		-“Frequent Mutation of Histone-Modifying Genes in Non-Hodgkin Lymphoma.”
193		-Nature 476 (7360): 298–303. <https://doi.org/10.1038/nature10351>.
194		-
195		-</div>
196		-
197		-<div id="ref-okosunRecurrentMTORC1activatingRRAGC2016a"
198		-class="csl-entry">
199		-
200		-Okosun, Jessica, Rachel L. Wolfson, Jun Wang, Shamzah Araf, Lucy
201		-Wilkins, Brian M. Castellano, Leire Escudero-Ibarz, et al. 2016.
202		-“Recurrent <span class="nocase">mTORC1-activating RRAGC</span> Mutations
203		-in Follicular Lymphoma.” Nature Genetics 48 (2): 183–88.
204		-<https://doi.org/10.1038/ng.3473>.
205		-
206		-</div>
207		-
208		-<div id="ref-pasqualucciInactivatingMutationsAcetyltransferase2011a"
209		-class="csl-entry">
210		-
211		-Pasqualucci, Laura, David Dominguez-Sola, Annalisa Chiarenza, Giulia
212		-Fabbri, Adina Grunn, Vladimir Trifonov, Lawryn H. Kasper, et al. 2011.
213		-“Inactivating Mutations of Acetyltransferase Genes in <span
214		-class="nocase">B-cell</span> Lymphoma.” Nature 471 (7337): 189–95.
215		-<https://doi.org/10.1038/nature09730>.
216		-
217		-</div>
218		-
219		-<div id="ref-russler-germainMutationsAssociatedProgression2023b"
220		-class="csl-entry">
221		-
222		-Russler-Germain, David A., Kilannin Krysiak, Cody A. Ramirez, Matthew
223		-Mosior, Marcus P. Watkins, Felicia Gomez, Zachary L. Skidmore, et al.
224		-2023. “Mutations Associated with Progression in Follicular Lymphoma
225		-Predict Inferior Outcomes at Diagnosis: Alliance A151303.” *Blood
226		-Advances* 7: 5524–39.
227		-<https://doi.org/10.1182/bloodadvances.2023010779>.
228		-
229		-</div>
230		-
231		-<div id="ref-yildizActivatingSTAT6Mutations2015c" class="csl-entry">
232		-
233		-Yildiz, Mehmet, Hongxiu Li, Denzil Bernard, Nisar A. Amin, Peter
234		-Ouillette, Siân Jones, Kamlai Saiya-Cork, et al. 2015. “Activating STAT6
235		-Mutations in Follicular Lymphoma.” Blood 125 (4): 668–79.
236		-<https://doi.org/10.1182/blood-2014-06-582650>.
237		-
238		-</div>
239		-
240		-</div>

...	...	@@ -1,76 +0,0 @@
1		-\| Category \| Gene \| Details \| Mutation frequency \| Static view (Gene) \| Static view (Protein) \| Comment \|
2		-\| :---: \| :----: \| :---: \| :---: \| :---: \|
3		-\|:--:\|[ACTB](ACTB)\|:-:\|:-:\|
4		-\|1\|[ARID1A](ARID1A)\|\|[view](images/proteinpaint/ARID1A.svg)\|[view](images/proteinpaint/ARID1A_NM_006015.svg)\|
5		-\|1\|[ARID5B](ARID5B)\|\|[view](images/proteinpaint/ARID5B.svg)\|[view](images/proteinpaint/ARID5B_NM_032199.svg)\|
6		-\|1\|[B2M](B2M)\|\|[view](images/proteinpaint/B2M.svg)\|[view](images/proteinpaint/B2M_NM_004048.svg)\|
7		-\|1\|[BIRC6](BIRC6)\|\|[view](images/proteinpaint/BIRC6.svg)\|[view](images/proteinpaint/BIRC6_NM_016252.svg)\|
8		-\|1-a\|[BTG1](BTG1)\|\|[view](images/proteinpaint/BTG1.svg)\|[view](images/proteinpaint/BTG1_NM_001731.svg)\|
9		-\|1\|[CARD11](CARD11)\|\|[view](images/proteinpaint/CARD11.svg)\|[view](images/proteinpaint/CARD11_NM_032415.svg)\|
10		-\|1\|[CD58](CD58)\|\|[view](images/proteinpaint/CD58.svg)\|[view](images/proteinpaint/CD58_NM_001779.svg)\|
11		-\|1-a\|[CD83](CD83)\|\|[view](images/proteinpaint/CD83.svg)\|[view](images/proteinpaint/CD83_NM_004233.svg)\|
12		-\|1\|[CDKN2A](CDKN2A)\|\|[view](images/proteinpaint/CDKN2A.svg)\|[view](images/proteinpaint/CDKN2A_NM_000077.svg)\|
13		-\|1\|[CHD8](CHD8)\|\|[view](images/proteinpaint/CHD8.svg)\|[view](images/proteinpaint/CHD8_NM_001170629.svg)\|
14		-\|1\|[CREBBP](CREBBP)\|\|[view](images/proteinpaint/CREBBP.svg)\|[view](images/proteinpaint/CREBBP_NM_004380.svg)\|
15		-\|1\|[CSF2RB](CSF2RB)\|\|[LOAD](https://morinlab.github.io/LLMPP/GAMBL/CSF2RB.html)\|[LOAD](https://morinlab.github.io/LLMPP/GAMBL/CSF2RB_protein.html)\|
16		-\|1\|[DDX3X](DDX3X)\|\|[view](images/proteinpaint/DDX3X.svg)\|[view](images/proteinpaint/DDX3X_NM_001356.svg)\|
17		-\|1-a\|[DTX1](DTX1)\|\|[view](images/proteinpaint/DTX1.svg)\|[view](images/proteinpaint/DTX1_NM_004416.svg)\|
18		-\|1-a\|[DUSP2](DUSP2)\|\|[view](images/proteinpaint/DUSP2.svg)\|[view](images/proteinpaint/DUSP2_NM_004418.svg)\|
19		-\|1-a\|[EBF1](EBF1)\|\|[view](images/proteinpaint/EBF1.svg)\|[view](images/proteinpaint/EBF1_NM_024007.svg)\|
20		-\|1\|[EP300](EP300)\|\|[view](images/proteinpaint/EP300.svg)\|[view](images/proteinpaint/EP300_NM_001429.svg)\|
21		-\|1-a\|[ETS1](ETS1)\|\|[view](images/proteinpaint/ETS1.svg)\|[view](images/proteinpaint/ETS1_NM_001143820.svg)\|
22		-\|1\|[EWSR1](EWSR1)\|\|[view](images/proteinpaint/EWSR1.svg)\|[view](images/proteinpaint/EWSR1_NM_013986.svg)\|
23		-\|1\|[EZH2](EZH2)\|\|[view](images/proteinpaint/EZH2.svg)\|[view](images/proteinpaint/EZH2_NM_001203247.svg)\|
24		-\|1\|[FAS](FAS)\|\|[view](images/proteinpaint/FAS.svg)\|[view](images/proteinpaint/FAS_NM_000043.svg)\|
25		-\|1\|[FAT1](FAT1)\|\|[LOAD](https://morinlab.github.io/LLMPP/GAMBL/FAT1.html)\|[LOAD](https://morinlab.github.io/LLMPP/GAMBL/FAT1_protein.html)\|
26		-\|1\|[FAT4](FAT4)\|\|[view](images/proteinpaint/FAT4.svg)\|[view](images/proteinpaint/FAT4_NM_024582.svg)\|
27		-\|1\|[GNA13](GNA13)\|\|[view](images/proteinpaint/GNA13.svg)\|[view](images/proteinpaint/GNA13_NM_006572.svg)\|
28		-\|1\|[H1-2](H1-2)(HIST1H1C)\|\|[LOAD](https://morinlab.github.io/LLMPP/GAMBL/H1-2.html)\|[view](images/proteinpaint/HIST1H1C_NM_005319.svg)\|
29		-\|1\|[H1-3](H1-3)(HIST1H1D)\|\|[LOAD](https://morinlab.github.io/LLMPP/GAMBL/H1-3.html)\|[view](images/proteinpaint/HIST1H1D_NM_005320.svg)\|
30		-\|1\|[H1-4](H1-4)(HIST1H1E)\|\|[LOAD](https://morinlab.github.io/LLMPP/GAMBL/H1-4.html)\|[view](images/proteinpaint/HIST1H1E_NM_005321.svg)\|
31		-\|1\|[H1-5](H1-5)(HIST1H1B)\|\|[LOAD](https://morinlab.github.io/LLMPP/GAMBL/H1-5.html)\|[view](images/proteinpaint/HIST1H1B_NM_005322.svg)\|
32		-\|1\|[HLA-B](HLA-B)\|\|[view](images/proteinpaint/HLA-B.svg)\|[view](images/proteinpaint/HLA-B_NM_005514.svg)\|
33		-\|1-a\|[IL4R](IL4R)\|\|[view](images/proteinpaint/IL4R.svg)\|[view](images/proteinpaint/IL4R_NM_000418.svg)\|
34		-\|1-a\|[IRF8](IRF8)\|\|[view](images/proteinpaint/IRF8.svg)\|[view](images/proteinpaint/IRF8_NM_002163.svg)\|
35		-\|1-a\|[ITPKB](ITPKB)\|\|[view](images/proteinpaint/ITPKB.svg)\|[view](images/proteinpaint/ITPKB_NM_002221.svg)\|
36		-\|1\|[JAK1](JAK1)\|\|[view](images/proteinpaint/JAK1.svg)\|[view](images/proteinpaint/JAK1_NM_002227.svg)\|
37		-\|1\|[KMT2C](KMT2C)\|\|[view](images/proteinpaint/KMT2C.svg)\|[view](images/proteinpaint/KMT2C_NM_170606.svg)\|
38		-\|1-a\|[LTB](LTB)\|\|[view](images/proteinpaint/LTB.svg)\|[view](images/proteinpaint/LTB_NM_002341.svg)\|
39		-\|1-a\|[MS4A1](MS4A1)\|\|[view](images/proteinpaint/MS4A1.svg)\|[LOAD](https://morinlab.github.io/LLMPP/GAMBL/MS4A1_protein.html)\|
40		-\|1\|[NFKBIA](NFKBIA)\|\|[view](images/proteinpaint/NFKBIA.svg)\|[view](images/proteinpaint/NFKBIA_NM_020529.svg)\|
41		-\|1\|[NFKBIE](NFKBIE)\|\|[view](images/proteinpaint/NFKBIE.svg)\|[view](images/proteinpaint/NFKBIE_NM_004556.svg)\|
42		-\|1-a\|[OSBPL10](OSBPL10)\|\|[view](images/proteinpaint/OSBPL10.svg)\|[view](images/proteinpaint/OSBPL10_NM_017784.svg)\|
43		-\|1\|[P2RY8](P2RY8)\|\|[view](images/proteinpaint/P2RY8.svg)\|[view](images/proteinpaint/P2RY8_NM_178129.svg)\|
44		-\|1\|[PCLO](PCLO)\|\|[view](images/proteinpaint/PCLO.svg)\|[view](images/proteinpaint/PCLO_NM_033026.svg)\|
45		-\|1\|[PHIP](PHIP)\|\|[LOAD](https://morinlab.github.io/LLMPP/GAMBL/PHIP.html)\|[LOAD](https://morinlab.github.io/LLMPP/GAMBL/PHIP_protein.html)\|
46		-\|1-a\|[PIM1](PIM1)\|\|[view](images/proteinpaint/PIM1.svg)\|[view](images/proteinpaint/PIM1_NM_002648.svg)\|
47		-\|1-a\|[PIM2](PIM2)\|\|[view](images/proteinpaint/PIM2.svg)\|[view](images/proteinpaint/PIM2_NM_006875.svg)\|
48		-\|1\|[PRKDC](PRKDC)\|\|[view](images/proteinpaint/PRKDC.svg)\|[view](images/proteinpaint/PRKDC_NM_006904.svg)\|
49		-\|1-a\|[PTPN1](PTPN1)\|\|[view](images/proteinpaint/PTPN1.svg)\|[view](images/proteinpaint/PTPN1_NM_002827.svg)\|
50		-\|1\|[PTPRD](PTPRD)\|\|[view](images/proteinpaint/PTPRD.svg)\|[view](images/proteinpaint/PTPRD_NM_002839.svg)\|
51		-\|1\|[RHOA](RHOA)\|\|[view](images/proteinpaint/RHOA.svg)\|[view](images/proteinpaint/RHOA_NM_001664.svg)\|
52		-\|1-a\|[S1PR2](S1PR2)\|\|[view](images/proteinpaint/S1PR2.svg)\|[view](images/proteinpaint/S1PR2_NM_004230.svg)\|
53		-\|1-a\|[SGK1](SGK1)\|\|[view](images/proteinpaint/SGK1.svg)\|[view](images/proteinpaint/SGK1_NM_005627.svg)\|
54		-\|1\|[SIN3A](SIN3A)\|\|[view](images/proteinpaint/SIN3A.svg)\|[view](images/proteinpaint/SIN3A_NM_001145358.svg)\|
55		-\|1\|[SMARCA2](SMARCA2)\|\|[LOAD](https://morinlab.github.io/LLMPP/GAMBL/SMARCA2.html)\|[LOAD](https://morinlab.github.io/LLMPP/GAMBL/SMARCA2_protein.html)\|
56		-\|1\|[SMARCA4](SMARCA4)\|\|[view](images/proteinpaint/SMARCA4.svg)\|[view](images/proteinpaint/SMARCA4_NM_001128849.svg)\|
57		-\|1-a\|[SOCS1](SOCS1)\|\|[view](images/proteinpaint/SOCS1.svg)\|[view](images/proteinpaint/SOCS1_NM_003745.svg)\|
58		-\|1\|[SPEN](SPEN)\|\|[view](images/proteinpaint/SPEN.svg)\|[view](images/proteinpaint/SPEN_NM_015001.svg)\|
59		-\|1\|[STAT3](STAT3)\|\|[view](images/proteinpaint/STAT3.svg)\|[view](images/proteinpaint/STAT3_NM_139276.svg)\|
60		-\|1\|[STAT6](STAT6)\|\|[view](images/proteinpaint/STAT6.svg)\|[view](images/proteinpaint/STAT6_NM_003153.svg)\|
61		-\|1\|[TAP1](TAP1)\|\|[view](images/proteinpaint/TAP1.svg)\|[view](images/proteinpaint/TAP1_NM_000593.svg)\|
62		-\|1\|[TBL1XR1](TBL1XR1)\|\|[view](images/proteinpaint/TBL1XR1.svg)\|[view](images/proteinpaint/TBL1XR1_NM_024665.svg)\|
63		-\|1\|[TCF3](TCF3)\|\|[view](images/proteinpaint/TCF3.svg)\|[view](images/proteinpaint/TCF3_NM_003200.svg)\|
64		-\|1\|[TET3](TET3)\|\|[LOAD](https://morinlab.github.io/LLMPP/GAMBL/TET3.html)\|[LOAD](https://morinlab.github.io/LLMPP/GAMBL/TET3_protein.html)\|
65		-\|1-a\|[TMSB4X](TMSB4X)\|\|[view](images/proteinpaint/TMSB4X.svg)\|[view](images/proteinpaint/TMSB4X_NM_021109.svg)\|
66		-\|1\|[TNFAIP3](TNFAIP3)\|\|[view](images/proteinpaint/TNFAIP3.svg)\|[view](images/proteinpaint/TNFAIP3_NM_006290.svg)\|
67		-\|1\|[TNFRSF1B](TNFRSF1B)\|\|[LOAD](https://morinlab.github.io/LLMPP/GAMBL/TNFRSF1B.html)\|[LOAD](https://morinlab.github.io/LLMPP/GAMBL/TNFRSF1B_protein.html)\|
68		-\|1\|[TP53](TP53)\|\|[view](images/proteinpaint/TP53.svg)\|[view](images/proteinpaint/TP53_NM_000546.svg)\|
69		-\|1\|[TRAF3](TRAF3)\|\|[view](images/proteinpaint/TRAF3.svg)\|[view](images/proteinpaint/TRAF3_NM_145725.svg)\|
70		-\|1\|[UBE2A](UBE2A)\|\|[view](images/proteinpaint/UBE2A.svg)\|[view](images/proteinpaint/UBE2A_NM_003336.svg)\|
71		-\|1\|[UBR5](UBR5)\|\|[view](images/proteinpaint/UBR5.svg)\|[view](images/proteinpaint/UBR5_NM_015902.svg)\|
72		-\|1\|[UNC5C](UNC5C)\|\|[view](images/proteinpaint/UNC5C.svg)\|[view](images/proteinpaint/UNC5C_NM_003728.svg)\|
73		-\|1\|[VPS13B](VPS13B)\|\|[view](images/proteinpaint/VPS13B.svg)\|[view](images/proteinpaint/VPS13B_NM_152564.svg)\|
74		-\|1-a\|[WEE1](WEE1)\|\|[view](images/proteinpaint/WEE1.svg)\|[view](images/proteinpaint/WEE1_NM_003390.svg)\|
75		-\|1\|[XPO1](XPO1)\|\|[view](images/proteinpaint/XPO1.svg)\|[view](images/proteinpaint/XPO1_NM_003400.svg)\|
76		-\|1-a\|[ZFP36L1](ZFP36L1)\|\|[view](images/proteinpaint/ZFP36L1.svg)\|[view](images/proteinpaint/ZFP36L1_NM_004926.svg)\|

...	...	@@ -1,35 +0,0 @@
1		-\| Category \| Gene \| Details \| Mutation frequency \| Static view (Gene) \| Static view (Protein) \| Comment \|
2		-\| :---: \| :----: \| :---: \| :---: \| :---: \|
3		-\|:--:\|[ACTG1](ACTG1)\|:-:\|:-:\|
4		-\|2\|[ADGRG6](ADGRG6)\|\|[LOAD](https://morinlab.github.io/LLMPP/GAMBL/ADGRG6.html)\|[LOAD](https://morinlab.github.io/LLMPP/GAMBL/ADGRG6_protein.html)\|
5		-\|2\|[AXDND1](AXDND1)\|\|[LOAD](https://morinlab.github.io/LLMPP/GAMBL/AXDND1.html)\|[LOAD](https://morinlab.github.io/LLMPP/GAMBL/AXDND1_protein.html)\|
6		-\|2-a\|[BCL7A](BCL7A)\|\|[view](images/proteinpaint/BCL7A.svg)\|[view](images/proteinpaint/BCL7A_NM_020993.svg)\|
7		-\|2\|[CCND3](CCND3)\|\|[view](images/proteinpaint/CCND3.svg)\|[view](images/proteinpaint/CCND3_NM_001760.svg)\|
8		-\|2\|[CDH5](CDH5)\|\|[LOAD](https://morinlab.github.io/LLMPP/GAMBL/CDH5.html)\|[LOAD](https://morinlab.github.io/LLMPP/GAMBL/CDH5_protein.html)\|
9		-\|2\|[CHD2](CHD2)\|\|[LOAD](https://morinlab.github.io/LLMPP/GAMBL/CHD2.html)\|[LOAD](https://morinlab.github.io/LLMPP/GAMBL/CHD2_protein.html)\|
10		-\|2-a\|[CIITA](CIITA)\|\|[view](images/proteinpaint/CIITA.svg)\|[view](images/proteinpaint/CIITA_NM_000246.svg)\|
11		-\|2\|[CISH](CISH)\|\|[LOAD](https://morinlab.github.io/LLMPP/GAMBL/CISH.html)\|[LOAD](https://morinlab.github.io/LLMPP/GAMBL/CISH_protein.html)\|
12		-\|2\|[DNAH12](DNAH12)\|\|[LOAD](https://morinlab.github.io/LLMPP/GAMBL/DNAH12.html)\|[LOAD](https://morinlab.github.io/LLMPP/GAMBL/DNAH12_protein.html)\|
13		-\|2\|[EEF1A1](EEF1A1)\|\|[view](images/proteinpaint/EEF1A1.svg)\|[view](images/proteinpaint/EEF1A1_NM_001402.svg)\|
14		-\|2\|[EGR1](EGR1)\|\|[LOAD](https://morinlab.github.io/LLMPP/GAMBL/EGR1.html)\|[LOAD](https://morinlab.github.io/LLMPP/GAMBL/EGR1_protein.html)\|
15		-\|2\|[HLA-A](HLA-A)\|\|[view](images/proteinpaint/HLA-A.svg)\|[view](images/proteinpaint/HLA-A_NM_002116.svg)\|
16		-\|2\|[HLA-C](HLA-C)\|\|[view](images/proteinpaint/HLA-C.svg)\|[view](images/proteinpaint/HLA-C_NM_002117.svg)\|
17		-\|2-a\|[IGLL5](IGLL5)\|\|[view](images/proteinpaint/IGLL5.svg)\|[view](images/proteinpaint/IGLL5_NM_001178126.svg)\|
18		-\|2-a\|[IRF4](IRF4)\|\|[view](images/proteinpaint/IRF4.svg)\|[view](images/proteinpaint/IRF4_NM_002460.svg)\|
19		-\|2\|[IKBKB](IKBKB)\|\|[view](images/proteinpaint/IKBKB.svg)\|[view](images/proteinpaint/IKBKB_NM_001556.svg)\|
20		-\|2\|[ITGB2](ITGB2)\|\|[LOAD](https://morinlab.github.io/LLMPP/GAMBL/ITGB2.html)\|[LOAD](https://morinlab.github.io/LLMPP/GAMBL/ITGB2_protein.html)\|
21		-\|2-a\|[KLF2](KLF2)\|\|[view](images/proteinpaint/KLF2.svg)\|[view](images/proteinpaint/KLF2_NM_016270.svg)\|
22		-\|2\|[KMT2D](KMT2D)\|\|[view](images/proteinpaint/KMT2D.svg)\|[view](images/proteinpaint/KMT2D_NM_003482.svg)\|
23		-\|2\|[LIMD2](LIMD2)\|\|[LOAD](https://morinlab.github.io/LLMPP/GAMBL/LIMD2.html)\|[LOAD](https://morinlab.github.io/LLMPP/GAMBL/LIMD2_protein.html)\|
24		-\|2\|[MYB](MYB)\|\|[view](images/proteinpaint/MYB.svg)\|[view](images/proteinpaint/MYB_NM_001130173.svg)\|
25		-\|2\|[NFKB2](NFKB2)\|\|[view](images/proteinpaint/NFKB2.svg)\|[view](images/proteinpaint/NFKB2_NM_001077494.svg)\|
26		-\|2\|[NSD2](NSD2)\|\|[view](images/proteinpaint/NSD2.svg)\|[view](images/proteinpaint/NSD2_NM_133330.svg)\|
27		-\|2\|[OR13C2](OR13C2)\|\|[LOAD](https://morinlab.github.io/LLMPP/GAMBL/OR13C2.html)\|[LOAD](https://morinlab.github.io/LLMPP/GAMBL/OR13C2_protein.html)\|
28		-\|2\|[PCDH7](PCDH7)\|\|[LOAD](https://morinlab.github.io/LLMPP/GAMBL/PCDH7.html)\|[LOAD](https://morinlab.github.io/LLMPP/GAMBL/PCDH7_protein.html)\|
29		-\|2\|[PCBP1](PCBP1)\|\|[view](images/proteinpaint/PCBP1.svg)\|[view](images/proteinpaint/PCBP1_NM_006196.svg)\|
30		-\|2\|[RDH12](RDH12)\|\|[LOAD](https://morinlab.github.io/LLMPP/GAMBL/RDH12.html)\|[LOAD](https://morinlab.github.io/LLMPP/GAMBL/RDH12_protein.html)\|
31		-\|2\|[RBM38](RBM38)\|\|[LOAD](https://morinlab.github.io/LLMPP/GAMBL/RBM38.html)\|[LOAD](https://morinlab.github.io/LLMPP/GAMBL/RBM38_protein.html)\|
32		-\|2\|[SCN9A](SCN9A)\|\|[LOAD](https://morinlab.github.io/LLMPP/GAMBL/SCN9A.html)\|[LOAD](https://morinlab.github.io/LLMPP/GAMBL/SCN9A_protein.html)\|
33		-\|2\|[SMAD3](SMAD3)\|\|[LOAD](https://morinlab.github.io/LLMPP/GAMBL/SMAD3.html)\|[LOAD](https://morinlab.github.io/LLMPP/GAMBL/SMAD3_protein.html)\|
34		-\|2\|[STRAP](STRAP)\|\|[LOAD](https://morinlab.github.io/LLMPP/GAMBL/STRAP.html)\|[LOAD](https://morinlab.github.io/LLMPP/GAMBL/STRAP_protein.html)\|
35		-\|2\|[ZNF217](ZNF217)\|\|[view](images/proteinpaint/ZNF217.svg)\|[view](images/proteinpaint/ZNF217_NM_006526.svg)\|