ABI3BP.md
... ...
@@ -24,15 +24,9 @@ Mutations were first described in DLBCL in 2013 by Morin et al.<sup>1</sup> Subs
24 24
[[include:dnds_ABI3BP.md]]
25 25
26 26
27
-View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/ABI3BP_protein.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/ABI3BP_protein_hg38.html)
27
+[[include:browser_ABI3BP.md]]
28 28
29
-![](images/proteinpaint/ABI3BP_NM_015429.svg)
30
-
31
-View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/ABI3BP.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/ABI3BP_hg38.html)
32
-
33
-![](images/proteinpaint/ABI3BP.svg)
34
-
35
-## ABI3BP Expression
29
+## Expression
36 30
![](images/gene_expression/ABI3BP_by_pathology.svg)
37 31
38 32
## All Mutations
ABL2.md
... ...
@@ -20,15 +20,9 @@ link-citations: true
20 20
21 21
[[include:dnds_ABL2.md]]
22 22
23
-View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/ABL2_protein.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/ABL2_protein_hg38.html)
23
+[[include:browser_ABL2.md]]
24 24
25
-![](images/proteinpaint/ABL2_NM_007314.svg)
26
-
27
-View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/ABL2.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/ABL2_hg38.html)
28
-
29
-![](images/proteinpaint/ABL2.svg)
30
-
31
-## ABL2 Expression
25
+## Expression
32 26
![](images/gene_expression/ABL2_by_pathology.svg)
33 27
34 28
ACAD9.md
... ...
@@ -31,15 +31,9 @@ Due to [minimal support](ACAD9#representative-mutation) in the original primary
31 31
32 32
33 33
34
-View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/ACAD9_protein.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/ACAD9_protein_hg38.html)
34
+[[include:browser_ACAD9.md]]
35 35
36
-![](images/proteinpaint/ACAD9_NM_014049.svg)
37
-
38
-View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/ACAD9.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/ACAD9_hg38.html)
39
-
40
-![](images/proteinpaint/ACAD9.svg)
41
-
42
-## ACAD9 Expression
36
+## Expression
43 37
![](images/gene_expression/ACAD9_by_pathology.svg)
44 38
45 39
## Representative Mutation
ACE.md
... ...
@@ -34,15 +34,9 @@ Due to [minimal support](ACE#representative-mutation) in the original primary da
34 34
35 35
36 36
37
-View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/ACE_protein.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/ACE_protein_hg38.html)
37
+[[include:browser_ACE.md]]
38 38
39
-![](images/proteinpaint/ACE_NM_000789.svg)
40
-
41
-View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/ACE.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/ACE_hg38.html)
42
-
43
-![](images/proteinpaint/ACE.svg)
44
-
45
-## ACE Expression
39
+## Expression
46 40
![](images/gene_expression/ACE_by_pathology.svg)
47 41
<!-- ORIGIN: loveGeneticLandscapeMutations2012 -->
48 42
<!-- BL: loveGeneticLandscapeMutations2012 -->
ACTB.md
... ...
@@ -53,16 +53,9 @@ ACTB is one of [a number of genes](https://github.com/morinlab/LLMPP/wiki/ashm)
53 53
| chr7 | 5568923 | T>C | N78D |
54 54
| chr7 | 5568920 | A>C | W79G |
55 55
56
-View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/ACTB_protein.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/ACTB_protein_hg38.html)
56
+[[include:browser_ACTB.md]]
57 57
58
-![](images/proteinpaint/ACTB_NM_001101.svg)
59
-
60
-View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/ACTB.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/ACTB_hg38.html)
61
-
62
-![](images/proteinpaint/ACTB.svg)
63
-
64
-
65
-## ACTB Expression
58
+## Expression
66 59
![](images/gene_expression/ACTB_by_pathology.svg)
67 60
68 61
[[include:mermaid_ACTB.md]]
ACTG1.md
... ...
@@ -37,15 +37,9 @@ ACTG1 is one of [a number of genes](https://github.com/morinlab/LLMPP/wiki/ashm)
37 37
38 38
39 39
40
-View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/ACTG1_protein.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/ACTG1_protein_hg38.html)
40
+[[include:browser_ACTG1.md]]
41 41
42
-![](images/proteinpaint/ACTG1_NM_001614.svg)
43
-
44
-View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/ACTG1.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/ACTG1_hg38.html)
45
-
46
-![](images/proteinpaint/ACTG1.svg)
47
-
48
-## ACTG1 Expression
42
+## Expression
49 43
![](images/gene_expression/ACTG1_by_pathology.svg)
50 44
51 45
[[include:mermaid_ACTG1.md]]
ADAMTS1.md
... ...
@@ -30,15 +30,9 @@ Mutations in this gene were first described in DLBCL in 2021 by Hübschmann et a
30 30
31 31
32 32
33
-View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/ADAMTS1_protein.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/ADAMTS1_protein_hg38.html)
33
+[[include:browser_ADAMTS1.md]]
34 34
35
-![](images/proteinpaint/ADAMTS1_NM_006988.svg)
36
-
37
-View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/ADAMTS1.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/ADAMTS1_hg38.html)
38
-
39
-![](images/proteinpaint/ADAMTS1.svg)
40
-
41
-## ADAMTS1 Expression
35
+## Expression
42 36
![](images/gene_expression/ADAMTS1_by_pathology.svg)
43 37
44 38
## All Mutations
ADAMTS5.md
... ...
@@ -23,15 +23,9 @@ link-citations: true
23 23
[[include:dnds_ADAMTS5.md]]
24 24
25 25
26
-View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/ADAMTS5_protein.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/ADAMTS5_protein_hg38.html)
26
+[[include:browser_ADAMTS5.md]]
27 27
28
-![](images/proteinpaint/ADAMTS5_NM_007038.svg)
29
-
30
-View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/ADAMTS5.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/ADAMTS5_hg38.html)
31
-
32
-![](images/proteinpaint/ADAMTS5.svg)
33
-
34
-## ADAMTS5 Expression
28
+## Expression
35 29
![](images/gene_expression/ADAMTS5_by_pathology.svg)
36 30
<!-- ORIGIN: burkhardtClinicalRelevanceMolecular2022b -->
37 31
<!-- BL: burkhardtClinicalRelevanceMolecular2022b -->
ADNP.md
... ...
@@ -27,15 +27,9 @@ link-citations: true
27 27
28 28
29 29
30
-View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/ADNP_protein.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/ADNP_protein_hg38.html)
30
+[[include:browser_ADNP.md]]
31 31
32
-![](images/proteinpaint/ADNP_NM_015339.svg)
33
-
34
-View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/ADNP.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/ADNP_hg38.html)
35
-
36
-![](images/proteinpaint/ADNP.svg)
37
-
38
-## ADNP Expression
32
+## Expression
39 33
![](images/gene_expression/ADNP_by_pathology.svg)
40 34
<!-- ORIGIN: burkhardtClinicalRelevanceMolecular2022b -->
41 35
<!-- BL: burkhardtClinicalRelevanceMolecular2022b -->
AGO4.md
... ...
@@ -26,15 +26,9 @@ link-citations: true
26 26
27 27
28 28
29
-View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/AGO4_protein.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/AGO4_protein_hg38.html)
29
+[[include:browser_AGO4.md]]
30 30
31
-![](images/proteinpaint/AGO4_NM_017629.svg)
32
-
33
-View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/AGO4.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/AGO4_hg38.html)
34
-
35
-![](images/proteinpaint/AGO4.svg)
36
-
37
-## AGO4 Expression
31
+## Expression
38 32
![](images/gene_expression/AGO4_by_pathology.svg)
39 33
<!-- ORIGIN: burkhardtClinicalRelevanceMolecular2022b -->
40 34
<!-- BL: burkhardtClinicalRelevanceMolecular2022b -->
browser_ABI3BP.md
... ...
@@ -0,0 +1,11 @@
1
+## Visualizations
2
+### Protein
3
+View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/ABI3BP_protein.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/ABI3BP_protein_hg38.html)
4
+
5
+![](images/proteinpaint/ABI3BP_NM_015429.svg)
6
+
7
+### Genome
8
+View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/ABI3BP.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/ABI3BP_hg38.html)
9
+
10
+![](images/proteinpaint/ABI3BP.svg)
11
+
browser_ABL2.md
... ...
@@ -0,0 +1,11 @@
1
+## Visualizations
2
+### Protein
3
+View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/ABL2_protein.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/ABL2_protein_hg38.html)
4
+
5
+![](images/proteinpaint/ABL2_NM_007314.svg)
6
+
7
+### Genome
8
+View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/ABL2.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/ABL2_hg38.html)
9
+
10
+![](images/proteinpaint/ABL2.svg)
11
+
browser_ACAD9.md
... ...
@@ -0,0 +1,11 @@
1
+## Visualizations
2
+### Protein
3
+View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/ACAD9_protein.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/ACAD9_protein_hg38.html)
4
+
5
+![](images/proteinpaint/ACAD9_NM_014049.svg)
6
+
7
+### Genome
8
+View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/ACAD9.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/ACAD9_hg38.html)
9
+
10
+![](images/proteinpaint/ACAD9.svg)
11
+
browser_ACE.md
... ...
@@ -0,0 +1,11 @@
1
+## Visualizations
2
+### Protein
3
+View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/ACE_protein.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/ACE_protein_hg38.html)
4
+
5
+![](images/proteinpaint/ACE_NM_000789.svg)
6
+
7
+### Genome
8
+View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/ACE.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/ACE_hg38.html)
9
+
10
+![](images/proteinpaint/ACE.svg)
11
+
browser_ACTB.md
... ...
@@ -0,0 +1,12 @@
1
+## Visualizations
2
+### Protein
3
+View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/ACTB_protein.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/ACTB_protein_hg38.html)
4
+
5
+![](images/proteinpaint/ACTB_NM_001101.svg)
6
+
7
+### Genome
8
+View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/ACTB.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/ACTB_hg38.html)
9
+
10
+![](images/proteinpaint/ACTB.svg)
11
+
12
+
browser_ACTG1.md
... ...
@@ -0,0 +1,11 @@
1
+## Visualizations
2
+### Protein
3
+View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/ACTG1_protein.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/ACTG1_protein_hg38.html)
4
+
5
+![](images/proteinpaint/ACTG1_NM_001614.svg)
6
+
7
+### Genome
8
+View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/ACTG1.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/ACTG1_hg38.html)
9
+
10
+![](images/proteinpaint/ACTG1.svg)
11
+
browser_ADAMTS1.md
... ...
@@ -0,0 +1,11 @@
1
+## Visualizations
2
+### Protein
3
+View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/ADAMTS1_protein.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/ADAMTS1_protein_hg38.html)
4
+
5
+![](images/proteinpaint/ADAMTS1_NM_006988.svg)
6
+
7
+### Genome
8
+View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/ADAMTS1.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/ADAMTS1_hg38.html)
9
+
10
+![](images/proteinpaint/ADAMTS1.svg)
11
+
browser_ADAMTS5.md
... ...
@@ -0,0 +1,11 @@
1
+## Visualizations
2
+### Protein
3
+View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/ADAMTS5_protein.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/ADAMTS5_protein_hg38.html)
4
+
5
+![](images/proteinpaint/ADAMTS5_NM_007038.svg)
6
+
7
+### Genome
8
+View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/ADAMTS5.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/ADAMTS5_hg38.html)
9
+
10
+![](images/proteinpaint/ADAMTS5.svg)
11
+
browser_ADNP.md
... ...
@@ -0,0 +1,11 @@
1
+## Visualizations
2
+### Protein
3
+View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/ADNP_protein.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/ADNP_protein_hg38.html)
4
+
5
+![](images/proteinpaint/ADNP_NM_015339.svg)
6
+
7
+### Genome
8
+View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/ADNP.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/ADNP_hg38.html)
9
+
10
+![](images/proteinpaint/ADNP.svg)
11
+
browser_AGO4.md
... ...
@@ -0,0 +1,11 @@
1
+## Visualizations
2
+### Protein
3
+View coding variants in ProteinPaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/AGO4_protein.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/AGO4_protein_hg38.html)
4
+
5
+![](images/proteinpaint/AGO4_NM_017629.svg)
6
+
7
+### Genome
8
+View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/AGO4.html) or [hg38](https://morinlab.github.io/LLMPP/GAMBL/AGO4_hg38.html)
9
+
10
+![](images/proteinpaint/AGO4.svg)
11
+