ACTB.md
... ...
@@ -37,13 +37,7 @@ timeline
37 37
38 38
## Mutation incidence in large patient cohorts (GAMBL reanalysis)
39 39
40
-|Entity|source |frequency (%)|
41
-|:------:|:--------------:|:-------------:|
42
-|DLBCL |GAMBL genomes | 9.18 |
43
-|DLBCL |Schmitz cohort| 9.80 |
44
-|DLBCL |Reddy cohort | 6.30 |
45
-|DLBCL |Chapuy cohort |12.40 |
46
-|FL |GAMBL genomes | 5.31 |
40
+[[include:DLBCL_ACTB.md]]
47 41
48 42
## Mutation pattern and selective pressure estimates
49 43
ACTG1.md
... ...
@@ -31,13 +31,7 @@ timeline
31 31
32 32
## Mutation incidence in large patient cohorts (GAMBL reanalysis)
33 33
34
-|Entity|source |frequency (%)|
35
-|:------:|:--------------:|:-------------:|
36
-|DLBCL |GAMBL genomes |5.35 |
37
-|DLBCL |Schmitz cohort|7.45 |
38
-|DLBCL |Reddy cohort |4.70 |
39
-|DLBCL |Chapuy cohort |2.99 |
40
-|FL |GAMBL genomes |3.00 |
34
+[[include:DLBCL_ACTG1.md]]
41 35
42 36
## Mutation pattern and selective pressure estimates
43 37
DLBCL_ACTB.md
... ...
@@ -0,0 +1,54 @@
1
+<table class="table" style="margin-left: auto; margin-right: auto;">
2
+ <thead>
3
+ <tr>
4
+ <th style="text-align:left;"> pathology </th>
5
+ <th style="text-align:left;"> Samples </th>
6
+ <th style="text-align:right;"> Incidence </th>
7
+ <th style="text-align:left;"> CI </th>
8
+ </tr>
9
+ </thead>
10
+<tbody>
11
+ <tr>
12
+ <td style="text-align:left;color: rgba(0, 0, 0, 255) !important;background-color: rgba(252, 204, 184, 255) !important;border-left:1px solid #DDDDDD;white-space: nowrap;"> DLBCL </td>
13
+ <td style="text-align:left;color: rgba(0, 0, 0, 255) !important;background-color: rgba(252, 204, 184, 255) !important;border-left:1px solid #DDDDDD;white-space: nowrap;"> GAMBL without Reddy </td>
14
+ <td style="text-align:right;color: rgba(0, 0, 0, 255) !important;background-color: rgba(252, 204, 184, 255) !important;border-left:1px solid #DDDDDD;white-space: nowrap;"> <span style=" color: rgba(0, 0, 0, 255) !important;border-radius: 4px; padding-right: 4px; padding-left: 4px; background-color: rgba(252, 204, 184, 255) !important;">0.0925</span> </td>
15
+ <td style="text-align:left;color: rgba(0, 0, 0, 255) !important;background-color: rgba(252, 204, 184, 255) !important;border-left:1px solid #DDDDDD;white-space: nowrap;"> [0.0753,0.1097] </td>
16
+ </tr>
17
+ <tr>
18
+ <td style="text-align:left;color: rgba(0, 0, 0, 255) !important;background-color: rgba(253, 206, 186, 255) !important;border-left:1px solid #DDDDDD;white-space: nowrap;"> DLBCL </td>
19
+ <td style="text-align:left;color: rgba(0, 0, 0, 255) !important;background-color: rgba(253, 206, 186, 255) !important;border-left:1px solid #DDDDDD;white-space: nowrap;"> GAMBL with Reddy </td>
20
+ <td style="text-align:right;color: rgba(0, 0, 0, 255) !important;background-color: rgba(253, 206, 186, 255) !important;border-left:1px solid #DDDDDD;white-space: nowrap;"> <span style=" color: rgba(0, 0, 0, 255) !important;border-radius: 4px; padding-right: 4px; padding-left: 4px; background-color: rgba(253, 206, 186, 255) !important;">0.0896</span> </td>
21
+ <td style="text-align:left;color: rgba(0, 0, 0, 255) !important;background-color: rgba(253, 206, 186, 255) !important;border-left:1px solid #DDDDDD;white-space: nowrap;"> [0.0757,0.1035] </td>
22
+ </tr>
23
+ <tr>
24
+ <td style="text-align:left;color: rgba(0, 0, 0, 255) !important;background-color: rgba(254, 219, 205, 255) !important;border-left:1px solid #DDDDDD;white-space: nowrap;"> DLBCL </td>
25
+ <td style="text-align:left;color: rgba(0, 0, 0, 255) !important;background-color: rgba(254, 219, 205, 255) !important;border-left:1px solid #DDDDDD;white-space: nowrap;"> BC </td>
26
+ <td style="text-align:right;color: rgba(0, 0, 0, 255) !important;background-color: rgba(254, 219, 205, 255) !important;border-left:1px solid #DDDDDD;white-space: nowrap;"> <span style=" color: rgba(0, 0, 0, 255) !important;border-radius: 4px; padding-right: 4px; padding-left: 4px; background-color: rgba(254, 219, 205, 255) !important;">0.0583</span> </td>
27
+ <td style="text-align:left;color: rgba(0, 0, 0, 255) !important;background-color: rgba(254, 219, 205, 255) !important;border-left:1px solid #DDDDDD;white-space: nowrap;"> [0.0275,0.089] </td>
28
+ </tr>
29
+ <tr>
30
+ <td style="text-align:left;color: rgba(0, 0, 0, 255) !important;background-color: rgba(253, 189, 166, 255) !important;border-left:1px solid #DDDDDD;white-space: nowrap;"> DLBCL </td>
31
+ <td style="text-align:left;color: rgba(0, 0, 0, 255) !important;background-color: rgba(253, 189, 166, 255) !important;border-left:1px solid #DDDDDD;white-space: nowrap;"> Dana-Farber </td>
32
+ <td style="text-align:right;color: rgba(0, 0, 0, 255) !important;background-color: rgba(253, 189, 166, 255) !important;border-left:1px solid #DDDDDD;white-space: nowrap;"> <span style=" color: rgba(0, 0, 0, 255) !important;border-radius: 4px; padding-right: 4px; padding-left: 4px; background-color: rgba(253, 189, 166, 255) !important;">0.1188</span> </td>
33
+ <td style="text-align:left;color: rgba(0, 0, 0, 255) !important;background-color: rgba(253, 189, 166, 255) !important;border-left:1px solid #DDDDDD;white-space: nowrap;"> [0.0824,0.1552] </td>
34
+ </tr>
35
+ <tr>
36
+ <td style="text-align:left;color: rgba(0, 0, 0, 255) !important;background-color: rgba(252, 202, 181, 255) !important;border-left:1px solid #DDDDDD;white-space: nowrap;"> DLBCL </td>
37
+ <td style="text-align:left;color: rgba(0, 0, 0, 255) !important;background-color: rgba(252, 202, 181, 255) !important;border-left:1px solid #DDDDDD;white-space: nowrap;"> NCI </td>
38
+ <td style="text-align:right;color: rgba(0, 0, 0, 255) !important;background-color: rgba(252, 202, 181, 255) !important;border-left:1px solid #DDDDDD;white-space: nowrap;"> <span style=" color: rgba(0, 0, 0, 255) !important;border-radius: 4px; padding-right: 4px; padding-left: 4px; background-color: rgba(252, 202, 181, 255) !important;">0.0979</span> </td>
39
+ <td style="text-align:left;color: rgba(0, 0, 0, 255) !important;background-color: rgba(252, 202, 181, 255) !important;border-left:1px solid #DDDDDD;white-space: nowrap;"> [0.071,0.1247] </td>
40
+ </tr>
41
+ <tr>
42
+ <td style="text-align:left;color: rgba(0, 0, 0, 255) !important;background-color: rgba(253, 208, 189, 255) !important;border-left:1px solid #DDDDDD;white-space: nowrap;"> DLBCL </td>
43
+ <td style="text-align:left;color: rgba(0, 0, 0, 255) !important;background-color: rgba(253, 208, 189, 255) !important;border-left:1px solid #DDDDDD;white-space: nowrap;"> Reddy </td>
44
+ <td style="text-align:right;color: rgba(0, 0, 0, 255) !important;background-color: rgba(253, 208, 189, 255) !important;border-left:1px solid #DDDDDD;white-space: nowrap;"> <span style=" color: rgba(0, 0, 0, 255) !important;border-radius: 4px; padding-right: 4px; padding-left: 4px; background-color: rgba(253, 208, 189, 255) !important;">0.0843</span> </td>
45
+ <td style="text-align:left;color: rgba(0, 0, 0, 255) !important;background-color: rgba(253, 208, 189, 255) !important;border-left:1px solid #DDDDDD;white-space: nowrap;"> [0.0607,0.1078] </td>
46
+ </tr>
47
+ <tr>
48
+ <td style="text-align:left;color: rgba(0, 0, 0, 255) !important;background-color: rgba(253, 175, 149, 255) !important;border-left:1px solid #DDDDDD;white-space: nowrap;"> DLBCL </td>
49
+ <td style="text-align:left;color: rgba(0, 0, 0, 255) !important;background-color: rgba(253, 175, 149, 255) !important;border-left:1px solid #DDDDDD;white-space: nowrap;"> DLBCL_ICGC </td>
50
+ <td style="text-align:right;color: rgba(0, 0, 0, 255) !important;background-color: rgba(253, 175, 149, 255) !important;border-left:1px solid #DDDDDD;white-space: nowrap;"> <span style=" color: rgba(0, 0, 0, 255) !important;border-radius: 4px; padding-right: 4px; padding-left: 4px; background-color: rgba(253, 175, 149, 255) !important;">0.1412</span> </td>
51
+ <td style="text-align:left;color: rgba(0, 0, 0, 255) !important;background-color: rgba(253, 175, 149, 255) !important;border-left:1px solid #DDDDDD;white-space: nowrap;"> [0.0672,0.2152] </td>
52
+ </tr>
53
+</tbody>
54
+</table>
... ...
\ No newline at end of file
DLBCL_ACTG1.md
... ...
@@ -0,0 +1,54 @@
1
+<table class="table" style="margin-left: auto; margin-right: auto;">
2
+ <thead>
3
+ <tr>
4
+ <th style="text-align:left;"> pathology </th>
5
+ <th style="text-align:left;"> Samples </th>
6
+ <th style="text-align:right;"> Incidence </th>
7
+ <th style="text-align:left;"> CI </th>
8
+ </tr>
9
+ </thead>
10
+<tbody>
11
+ <tr>
12
+ <td style="text-align:left;color: rgba(0, 0, 0, 255) !important;background-color: rgba(255, 224, 211, 255) !important;border-left:1px solid #DDDDDD;white-space: nowrap;"> DLBCL </td>
13
+ <td style="text-align:left;color: rgba(0, 0, 0, 255) !important;background-color: rgba(255, 224, 211, 255) !important;border-left:1px solid #DDDDDD;white-space: nowrap;"> GAMBL without Reddy </td>
14
+ <td style="text-align:right;color: rgba(0, 0, 0, 255) !important;background-color: rgba(255, 224, 211, 255) !important;border-left:1px solid #DDDDDD;white-space: nowrap;"> <span style=" color: rgba(0, 0, 0, 255) !important;border-radius: 4px; padding-right: 4px; padding-left: 4px; background-color: rgba(255, 224, 211, 255) !important;">0.0485</span> </td>
15
+ <td style="text-align:left;color: rgba(0, 0, 0, 255) !important;background-color: rgba(255, 224, 211, 255) !important;border-left:1px solid #DDDDDD;white-space: nowrap;"> [0.0357,0.0612] </td>
16
+ </tr>
17
+ <tr>
18
+ <td style="text-align:left;color: rgba(0, 0, 0, 255) !important;background-color: rgba(254, 222, 209, 255) !important;border-left:1px solid #DDDDDD;white-space: nowrap;"> DLBCL </td>
19
+ <td style="text-align:left;color: rgba(0, 0, 0, 255) !important;background-color: rgba(254, 222, 209, 255) !important;border-left:1px solid #DDDDDD;white-space: nowrap;"> GAMBL with Reddy </td>
20
+ <td style="text-align:right;color: rgba(0, 0, 0, 255) !important;background-color: rgba(254, 222, 209, 255) !important;border-left:1px solid #DDDDDD;white-space: nowrap;"> <span style=" color: rgba(0, 0, 0, 255) !important;border-radius: 4px; padding-right: 4px; padding-left: 4px; background-color: rgba(254, 222, 209, 255) !important;">0.0517</span> </td>
21
+ <td style="text-align:left;color: rgba(0, 0, 0, 255) !important;background-color: rgba(254, 222, 209, 255) !important;border-left:1px solid #DDDDDD;white-space: nowrap;"> [0.041,0.0625] </td>
22
+ </tr>
23
+ <tr>
24
+ <td style="text-align:left;color: rgba(0, 0, 0, 255) !important;background-color: rgba(255, 223, 210, 255) !important;border-left:1px solid #DDDDDD;white-space: nowrap;"> DLBCL </td>
25
+ <td style="text-align:left;color: rgba(0, 0, 0, 255) !important;background-color: rgba(255, 223, 210, 255) !important;border-left:1px solid #DDDDDD;white-space: nowrap;"> BC </td>
26
+ <td style="text-align:right;color: rgba(0, 0, 0, 255) !important;background-color: rgba(255, 223, 210, 255) !important;border-left:1px solid #DDDDDD;white-space: nowrap;"> <span style=" color: rgba(0, 0, 0, 255) !important;border-radius: 4px; padding-right: 4px; padding-left: 4px; background-color: rgba(255, 223, 210, 255) !important;">0.0493</span> </td>
27
+ <td style="text-align:left;color: rgba(0, 0, 0, 255) !important;background-color: rgba(255, 223, 210, 255) !important;border-left:1px solid #DDDDDD;white-space: nowrap;"> [0.0209,0.0777] </td>
28
+ </tr>
29
+ <tr>
30
+ <td style="text-align:left;color: rgba(0, 0, 0, 255) !important;background-color: rgba(255, 232, 222, 255) !important;border-left:1px solid #DDDDDD;white-space: nowrap;"> DLBCL </td>
31
+ <td style="text-align:left;color: rgba(0, 0, 0, 255) !important;background-color: rgba(255, 232, 222, 255) !important;border-left:1px solid #DDDDDD;white-space: nowrap;"> Dana-Farber </td>
32
+ <td style="text-align:right;color: rgba(0, 0, 0, 255) !important;background-color: rgba(255, 232, 222, 255) !important;border-left:1px solid #DDDDDD;white-space: nowrap;"> <span style=" color: rgba(0, 0, 0, 255) !important;border-radius: 4px; padding-right: 4px; padding-left: 4px; background-color: rgba(255, 232, 222, 255) !important;">0.0297</span> </td>
33
+ <td style="text-align:left;color: rgba(0, 0, 0, 255) !important;background-color: rgba(255, 232, 222, 255) !important;border-left:1px solid #DDDDDD;white-space: nowrap;"> [0.0106,0.0488] </td>
34
+ </tr>
35
+ <tr>
36
+ <td style="text-align:left;color: rgba(0, 0, 0, 255) !important;background-color: rgba(253, 212, 195, 255) !important;border-left:1px solid #DDDDDD;white-space: nowrap;"> DLBCL </td>
37
+ <td style="text-align:left;color: rgba(0, 0, 0, 255) !important;background-color: rgba(253, 212, 195, 255) !important;border-left:1px solid #DDDDDD;white-space: nowrap;"> NCI </td>
38
+ <td style="text-align:right;color: rgba(0, 0, 0, 255) !important;background-color: rgba(253, 212, 195, 255) !important;border-left:1px solid #DDDDDD;white-space: nowrap;"> <span style=" color: rgba(0, 0, 0, 255) !important;border-radius: 4px; padding-right: 4px; padding-left: 4px; background-color: rgba(253, 212, 195, 255) !important;">0.0745</span> </td>
39
+ <td style="text-align:left;color: rgba(0, 0, 0, 255) !important;background-color: rgba(253, 212, 195, 255) !important;border-left:1px solid #DDDDDD;white-space: nowrap;"> [0.0507,0.0982] </td>
40
+ </tr>
41
+ <tr>
42
+ <td style="text-align:left;color: rgba(0, 0, 0, 255) !important;background-color: rgba(254, 219, 204, 255) !important;border-left:1px solid #DDDDDD;white-space: nowrap;"> DLBCL </td>
43
+ <td style="text-align:left;color: rgba(0, 0, 0, 255) !important;background-color: rgba(254, 219, 204, 255) !important;border-left:1px solid #DDDDDD;white-space: nowrap;"> Reddy </td>
44
+ <td style="text-align:right;color: rgba(0, 0, 0, 255) !important;background-color: rgba(254, 219, 204, 255) !important;border-left:1px solid #DDDDDD;white-space: nowrap;"> <span style=" color: rgba(0, 0, 0, 255) !important;border-radius: 4px; padding-right: 4px; padding-left: 4px; background-color: rgba(254, 219, 204, 255) !important;">0.0599</span> </td>
45
+ <td style="text-align:left;color: rgba(0, 0, 0, 255) !important;background-color: rgba(254, 219, 204, 255) !important;border-left:1px solid #DDDDDD;white-space: nowrap;"> [0.0398,0.0801] </td>
46
+ </tr>
47
+ <tr>
48
+ <td style="text-align:left;color: rgba(0, 0, 0, 255) !important;background-color: rgba(254, 219, 204, 255) !important;border-left:1px solid #DDDDDD;white-space: nowrap;"> DLBCL </td>
49
+ <td style="text-align:left;color: rgba(0, 0, 0, 255) !important;background-color: rgba(254, 219, 204, 255) !important;border-left:1px solid #DDDDDD;white-space: nowrap;"> DLBCL_ICGC </td>
50
+ <td style="text-align:right;color: rgba(0, 0, 0, 255) !important;background-color: rgba(254, 219, 204, 255) !important;border-left:1px solid #DDDDDD;white-space: nowrap;"> <span style=" color: rgba(0, 0, 0, 255) !important;border-radius: 4px; padding-right: 4px; padding-left: 4px; background-color: rgba(254, 219, 204, 255) !important;">0.0588</span> </td>
51
+ <td style="text-align:left;color: rgba(0, 0, 0, 255) !important;background-color: rgba(254, 219, 204, 255) !important;border-left:1px solid #DDDDDD;white-space: nowrap;"> [0.0088,0.1088] </td>
52
+ </tr>
53
+</tbody>
54
+</table>
... ...
\ No newline at end of file