abateDistinctViralMutational2015a.md
... ...
@@ -9,6 +9,25 @@ bibliography: 'morinlab.bib'
9 9
|Entity| Tier 1 genes| Tier 2 genes|
10 10
|:-:|:-:|:-:|
11 11
|BL||1|
12
+```mermaid
13
+---
14
+config:
15
+ sankey:
16
+ showValues: true
17
+ linkColor: target
18
+ width: 300
19
+ height: 300
20
+ nodeAlignment: right
21
+ prefix: '('
22
+ suffix: ' genes)'
23
+---
24
+sankey-beta
25
+This study, BL Tier 1,
26
+This study, BL Tier 2, 1
27
+Other BL studies, BL Tier 1, 29
28
+Other BL studies, BL Tier 2, 157
29
+```
30
+
12 31
13 32
## Novel genes reported in this study
14 33
albuquerqueEnhancingKnowledgeDiscovery2017a.md
... ...
@@ -9,6 +9,25 @@ bibliography: 'morinlab.bib'
9 9
|Entity| Tier 1 genes| Tier 2 genes|
10 10
|:-:|:-:|:-:|
11 11
|DLBCL|3||
12
+```mermaid
13
+---
14
+config:
15
+ sankey:
16
+ showValues: true
17
+ linkColor: target
18
+ width: 300
19
+ height: 300
20
+ nodeAlignment: right
21
+ prefix: '('
22
+ suffix: ' genes)'
23
+---
24
+sankey-beta
25
+This study, DLBCL Tier 1, 3
26
+This study, DLBCL Tier 2,
27
+Other DLBCL studies, DLBCL Tier 1, 128
28
+Other DLBCL studies, DLBCL Tier 2, 198
29
+```
30
+
12 31
13 32
## Novel genes reported in this study
14 33
arthurGenomewideDiscoverySomatic2018.md
... ...
@@ -9,6 +9,25 @@ bibliography: 'morinlab.bib'
9 9
|Entity| Tier 1 genes| Tier 2 genes|
10 10
|:-:|:-:|:-:|
11 11
|DLBCL|8|12|
12
+```mermaid
13
+---
14
+config:
15
+ sankey:
16
+ showValues: true
17
+ linkColor: target
18
+ width: 300
19
+ height: 300
20
+ nodeAlignment: right
21
+ prefix: '('
22
+ suffix: ' genes)'
23
+---
24
+sankey-beta
25
+This study, DLBCL Tier 1, 8
26
+This study, DLBCL Tier 2, 12
27
+Other DLBCL studies, DLBCL Tier 1, 128
28
+Other DLBCL studies, DLBCL Tier 2, 198
29
+```
30
+
12 31
13 32
## Novel genes reported in this study
14 33
barariaCathepsinAlterationsInduce2020c.md
... ...
@@ -9,6 +9,25 @@ bibliography: 'morinlab.bib'
9 9
|Entity| Tier 1 genes| Tier 2 genes|
10 10
|:-:|:-:|:-:|
11 11
|FL|1||
12
+```mermaid
13
+---
14
+config:
15
+ sankey:
16
+ showValues: true
17
+ linkColor: target
18
+ width: 300
19
+ height: 300
20
+ nodeAlignment: right
21
+ prefix: '('
22
+ suffix: ' genes)'
23
+---
24
+sankey-beta
25
+This study, FL Tier 1, 1
26
+This study, FL Tier 2,
27
+Other FL studies, FL Tier 1, 66
28
+Other FL studies, FL Tier 2, 50
29
+```
30
+
12 31
13 32
## Novel genes reported in this study
14 33
beaLandscapeSomaticMutations2013.md
... ...
@@ -9,6 +9,25 @@ bibliography: 'morinlab.bib'
9 9
|Entity| Tier 1 genes| Tier 2 genes|
10 10
|:-:|:-:|:-:|
11 11
|MCL|11|16|
12
+```mermaid
13
+---
14
+config:
15
+ sankey:
16
+ showValues: true
17
+ linkColor: target
18
+ width: 300
19
+ height: 300
20
+ nodeAlignment: right
21
+ prefix: '('
22
+ suffix: ' genes)'
23
+---
24
+sankey-beta
25
+This study, MCL Tier 1, 11
26
+This study, MCL Tier 2, 16
27
+Other MCL studies, MCL Tier 1, 23
28
+Other MCL studies, MCL Tier 2, 46
29
+```
30
+
12 31
13 32
## Novel genes reported in this study
14 33
bohleRoleEarlyBcell2013.md
... ...
@@ -9,6 +9,25 @@ bibliography: 'morinlab.bib'
9 9
|Entity| Tier 1 genes| Tier 2 genes|
10 10
|:-:|:-:|:-:|
11 11
|DLBCL|1||
12
+```mermaid
13
+---
14
+config:
15
+ sankey:
16
+ showValues: true
17
+ linkColor: target
18
+ width: 300
19
+ height: 300
20
+ nodeAlignment: right
21
+ prefix: '('
22
+ suffix: ' genes)'
23
+---
24
+sankey-beta
25
+This study, DLBCL Tier 1, 1
26
+This study, DLBCL Tier 2,
27
+Other DLBCL studies, DLBCL Tier 1, 128
28
+Other DLBCL studies, DLBCL Tier 2, 198
29
+```
30
+
12 31
13 32
## Novel genes reported in this study
14 33
braggioGenomicAnalysisMarginal2012.md
... ...
@@ -9,6 +9,25 @@ bibliography: 'morinlab.bib'
9 9
|Entity| Tier 1 genes| Tier 2 genes|
10 10
|:-:|:-:|:-:|
11 11
|MZL|1||
12
+```mermaid
13
+---
14
+config:
15
+ sankey:
16
+ showValues: true
17
+ linkColor: target
18
+ width: 300
19
+ height: 300
20
+ nodeAlignment: right
21
+ prefix: '('
22
+ suffix: ' genes)'
23
+---
24
+sankey-beta
25
+This study, MZL Tier 1, 1
26
+This study, MZL Tier 2,
27
+Other MZL studies, MZL Tier 1, 42
28
+Other MZL studies, MZL Tier 2, 74
29
+```
30
+
12 31
13 32
## Novel genes reported in this study
14 33
burkhardtClinicalRelevanceMolecular2022b.md
... ...
@@ -9,6 +9,25 @@ bibliography: 'morinlab.bib'
9 9
|Entity| Tier 1 genes| Tier 2 genes|
10 10
|:-:|:-:|:-:|
11 11
|BL||25|
12
+```mermaid
13
+---
14
+config:
15
+ sankey:
16
+ showValues: true
17
+ linkColor: target
18
+ width: 300
19
+ height: 300
20
+ nodeAlignment: right
21
+ prefix: '('
22
+ suffix: ' genes)'
23
+---
24
+sankey-beta
25
+This study, BL Tier 1,
26
+This study, BL Tier 2, 25
27
+Other BL studies, BL Tier 1, 29
28
+Other BL studies, BL Tier 2, 157
29
+```
30
+
12 31
13 32
## Novel genes reported in this study
14 33
chapuyMolecularSubtypesDiffuse2018b.md
... ...
@@ -9,6 +9,25 @@ bibliography: 'morinlab.bib'
9 9
|Entity| Tier 1 genes| Tier 2 genes|
10 10
|:-:|:-:|:-:|
11 11
|DLBCL|2|17|
12
+```mermaid
13
+---
14
+config:
15
+ sankey:
16
+ showValues: true
17
+ linkColor: target
18
+ width: 300
19
+ height: 300
20
+ nodeAlignment: right
21
+ prefix: '('
22
+ suffix: ' genes)'
23
+---
24
+sankey-beta
25
+This study, DLBCL Tier 1, 2
26
+This study, DLBCL Tier 2, 17
27
+Other DLBCL studies, DLBCL Tier 1, 128
28
+Other DLBCL studies, DLBCL Tier 2, 198
29
+```
30
+
12 31
13 32
## Novel genes reported in this study
14 33
cheungAcquiredTNFRSF14Mutations2010a.md
... ...
@@ -8,12 +8,31 @@ bibliography: 'morinlab.bib'
8 8
9 9
|Entity| Tier 1 genes| Tier 2 genes|
10 10
|:-:|:-:|:-:|
11
-|FL|1||
12 11
|DLBCL|1||
12
+|FL|1||
13
+```mermaid
14
+---
15
+config:
16
+ sankey:
17
+ showValues: true
18
+ linkColor: target
19
+ width: 300
20
+ height: 300
21
+ nodeAlignment: right
22
+ prefix: '('
23
+ suffix: ' genes)'
24
+---
25
+sankey-beta
26
+This study, DLBCL Tier 1, 1
27
+This study, DLBCL Tier 2,
28
+Other DLBCL studies, DLBCL Tier 1, 128
29
+Other DLBCL studies, DLBCL Tier 2, 198
30
+```
31
+
13 32
14 33
## Novel genes reported in this study
15 34
16
-|New gene|FL tier|DLBCL tier|
35
+|New gene|DLBCL tier|FL tier|
17 36
|:-|:-:|:-:|
18 37
|[TNFRSF14](TNFRSF14)|1 |1 |
19 38
compagnoMutationsMultipleGenes2009a.md
... ...
@@ -9,6 +9,25 @@ bibliography: 'morinlab.bib'
9 9
|Entity| Tier 1 genes| Tier 2 genes|
10 10
|:-:|:-:|:-:|
11 11
|DLBCL|1||
12
+```mermaid
13
+---
14
+config:
15
+ sankey:
16
+ showValues: true
17
+ linkColor: target
18
+ width: 300
19
+ height: 300
20
+ nodeAlignment: right
21
+ prefix: '('
22
+ suffix: ' genes)'
23
+---
24
+sankey-beta
25
+This study, DLBCL Tier 1, 1
26
+This study, DLBCL Tier 2,
27
+Other DLBCL studies, DLBCL Tier 1, 128
28
+Other DLBCL studies, DLBCL Tier 2, 198
29
+```
30
+
12 31
13 32
## Novel genes reported in this study
14 33
deschGenotypingCirculatingTumor2020.md
... ...
@@ -9,6 +9,25 @@ bibliography: 'morinlab.bib'
9 9
|Entity| Tier 1 genes| Tier 2 genes|
10 10
|:-:|:-:|:-:|
11 11
|PMBL|1|9|
12
+```mermaid
13
+---
14
+config:
15
+ sankey:
16
+ showValues: true
17
+ linkColor: target
18
+ width: 300
19
+ height: 300
20
+ nodeAlignment: right
21
+ prefix: '('
22
+ suffix: ' genes)'
23
+---
24
+sankey-beta
25
+This study, PMBL Tier 1, 1
26
+This study, PMBL Tier 2, 9
27
+Other PMBL studies, PMBL Tier 1, 76
28
+Other PMBL studies, PMBL Tier 2, 82
29
+```
30
+
12 31
13 32
## Novel genes reported in this study
14 33
dunsCharacterizationDLBCLPMBL2021b.md
... ...
@@ -10,6 +10,25 @@ bibliography: 'morinlab.bib'
10 10
|:-:|:-:|:-:|
11 11
|DLBCL|8|3|
12 12
|PMBL|6|8|
13
+```mermaid
14
+---
15
+config:
16
+ sankey:
17
+ showValues: true
18
+ linkColor: target
19
+ width: 300
20
+ height: 300
21
+ nodeAlignment: right
22
+ prefix: '('
23
+ suffix: ' genes)'
24
+---
25
+sankey-beta
26
+This study, PMBL Tier 1, 6
27
+This study, PMBL Tier 2, 8
28
+Other PMBL studies, PMBL Tier 1, 76
29
+Other PMBL studies, PMBL Tier 2, 82
30
+```
31
+
13 32
14 33
## Novel genes reported in this study
15 34
ganapathiGeneticLandscapeDural2016.md
... ...
@@ -9,6 +9,25 @@ bibliography: 'morinlab.bib'
9 9
|Entity| Tier 1 genes| Tier 2 genes|
10 10
|:-:|:-:|:-:|
11 11
|MZL|1||
12
+```mermaid
13
+---
14
+config:
15
+ sankey:
16
+ showValues: true
17
+ linkColor: target
18
+ width: 300
19
+ height: 300
20
+ nodeAlignment: right
21
+ prefix: '('
22
+ suffix: ' genes)'
23
+---
24
+sankey-beta
25
+This study, MZL Tier 1, 1
26
+This study, MZL Tier 2,
27
+Other MZL studies, MZL Tier 1, 42
28
+Other MZL studies, MZL Tier 2, 74
29
+```
30
+
12 31
13 32
## Novel genes reported in this study
14 33
gomezUltraDeepSequencingReveals2023.md
... ...
@@ -9,6 +9,25 @@ bibliography: 'morinlab.bib'
9 9
|Entity| Tier 1 genes| Tier 2 genes|
10 10
|:-:|:-:|:-:|
11 11
|PMBL|2|5|
12
+```mermaid
13
+---
14
+config:
15
+ sankey:
16
+ showValues: true
17
+ linkColor: target
18
+ width: 300
19
+ height: 300
20
+ nodeAlignment: right
21
+ prefix: '('
22
+ suffix: ' genes)'
23
+---
24
+sankey-beta
25
+This study, PMBL Tier 1, 2
26
+This study, PMBL Tier 2, 5
27
+Other PMBL studies, PMBL Tier 1, 76
28
+Other PMBL studies, PMBL Tier 2, 82
29
+```
30
+
12 31
13 32
## Novel genes reported in this study
14 33
grandeGenomewideDiscoverySomatic2019.md
... ...
@@ -9,6 +9,25 @@ bibliography: 'morinlab.bib'
9 9
|Entity| Tier 1 genes| Tier 2 genes|
10 10
|:-:|:-:|:-:|
11 11
|BL|9|4|
12
+```mermaid
13
+---
14
+config:
15
+ sankey:
16
+ showValues: true
17
+ linkColor: target
18
+ width: 300
19
+ height: 300
20
+ nodeAlignment: right
21
+ prefix: '('
22
+ suffix: ' genes)'
23
+---
24
+sankey-beta
25
+This study, BL Tier 1, 9
26
+This study, BL Tier 2, 4
27
+Other BL studies, BL Tier 1, 29
28
+Other BL studies, BL Tier 2, 157
29
+```
30
+
12 31
13 32
## Novel genes reported in this study
14 33
gunawardanaRecurrentSomaticMutations2014c.md
... ...
@@ -9,6 +9,25 @@ bibliography: 'morinlab.bib'
9 9
|Entity| Tier 1 genes| Tier 2 genes|
10 10
|:-:|:-:|:-:|
11 11
|PMBL|1||
12
+```mermaid
13
+---
14
+config:
15
+ sankey:
16
+ showValues: true
17
+ linkColor: target
18
+ width: 300
19
+ height: 300
20
+ nodeAlignment: right
21
+ prefix: '('
22
+ suffix: ' genes)'
23
+---
24
+sankey-beta
25
+This study, PMBL Tier 1, 1
26
+This study, PMBL Tier 2,
27
+Other PMBL studies, PMBL Tier 1, 76
28
+Other PMBL studies, PMBL Tier 2, 82
29
+```
30
+
12 31
13 32
## Novel genes reported in this study
14 33
hubschmannMutationalMechanismsShaping2021b.md
... ...
@@ -10,6 +10,25 @@ bibliography: 'morinlab.bib'
10 10
|:-:|:-:|:-:|
11 11
|FL|2|15|
12 12
|DLBCL|3|23|
13
+```mermaid
14
+---
15
+config:
16
+ sankey:
17
+ showValues: true
18
+ linkColor: target
19
+ width: 300
20
+ height: 300
21
+ nodeAlignment: right
22
+ prefix: '('
23
+ suffix: ' genes)'
24
+---
25
+sankey-beta
26
+This study, DLBCL Tier 1, 3
27
+This study, DLBCL Tier 2, 23
28
+Other DLBCL studies, DLBCL Tier 1, 128
29
+Other DLBCL studies, DLBCL Tier 2, 198
30
+```
31
+
13 32
14 33
## Novel genes reported in this study
15 34
jalladesExomeSequencingIdentifies2017.md
... ...
@@ -9,6 +9,25 @@ bibliography: 'morinlab.bib'
9 9
|Entity| Tier 1 genes| Tier 2 genes|
10 10
|:-:|:-:|:-:|
11 11
|MZL|2|26|
12
+```mermaid
13
+---
14
+config:
15
+ sankey:
16
+ showValues: true
17
+ linkColor: target
18
+ width: 300
19
+ height: 300
20
+ nodeAlignment: right
21
+ prefix: '('
22
+ suffix: ' genes)'
23
+---
24
+sankey-beta
25
+This study, MZL Tier 1, 2
26
+This study, MZL Tier 2, 26
27
+Other MZL studies, MZL Tier 1, 42
28
+Other MZL studies, MZL Tier 2, 74
29
+```
30
+
12 31
13 32
## Novel genes reported in this study
14 33
jardinRecurrentMutationsExportin2016a.md
... ...
@@ -9,6 +9,25 @@ bibliography: 'morinlab.bib'
9 9
|Entity| Tier 1 genes| Tier 2 genes|
10 10
|:-:|:-:|:-:|
11 11
|PMBL|1||
12
+```mermaid
13
+---
14
+config:
15
+ sankey:
16
+ showValues: true
17
+ linkColor: target
18
+ width: 300
19
+ height: 300
20
+ nodeAlignment: right
21
+ prefix: '('
22
+ suffix: ' genes)'
23
+---
24
+sankey-beta
25
+This study, PMBL Tier 1, 1
26
+This study, PMBL Tier 2,
27
+Other PMBL studies, PMBL Tier 1, 76
28
+Other PMBL studies, PMBL Tier 2, 82
29
+```
30
+
12 31
13 32
## Novel genes reported in this study
14 33
khodabakhshiRecurrentTargetsAberrant2012.md
... ...
@@ -9,6 +9,25 @@ bibliography: 'morinlab.bib'
9 9
|Entity| Tier 1 genes| Tier 2 genes|
10 10
|:-:|:-:|:-:|
11 11
|DLBCL|1||
12
+```mermaid
13
+---
14
+config:
15
+ sankey:
16
+ showValues: true
17
+ linkColor: target
18
+ width: 300
19
+ height: 300
20
+ nodeAlignment: right
21
+ prefix: '('
22
+ suffix: ' genes)'
23
+---
24
+sankey-beta
25
+This study, DLBCL Tier 1, 1
26
+This study, DLBCL Tier 2,
27
+Other DLBCL studies, DLBCL Tier 1, 128
28
+Other DLBCL studies, DLBCL Tier 2, 198
29
+```
30
+
12 31
13 32
## Novel genes reported in this study
14 33
krysiakRecurrentSomaticMutations2017b.md
... ...
@@ -9,6 +9,25 @@ bibliography: 'morinlab.bib'
9 9
|Entity| Tier 1 genes| Tier 2 genes|
10 10
|:-:|:-:|:-:|
11 11
|FL|17|5|
12
+```mermaid
13
+---
14
+config:
15
+ sankey:
16
+ showValues: true
17
+ linkColor: target
18
+ width: 300
19
+ height: 300
20
+ nodeAlignment: right
21
+ prefix: '('
22
+ suffix: ' genes)'
23
+---
24
+sankey-beta
25
+This study, FL Tier 1, 17
26
+This study, FL Tier 2, 5
27
+Other FL studies, FL Tier 1, 66
28
+Other FL studies, FL Tier 2, 50
29
+```
30
+
12 31
13 32
## Novel genes reported in this study
14 33
kwanhianMicroRNA142Mutated202012b.md
... ...
@@ -9,6 +9,25 @@ bibliography: 'morinlab.bib'
9 9
|Entity| Tier 1 genes| Tier 2 genes|
10 10
|:-:|:-:|:-:|
11 11
|DLBCL||1|
12
+```mermaid
13
+---
14
+config:
15
+ sankey:
16
+ showValues: true
17
+ linkColor: target
18
+ width: 300
19
+ height: 300
20
+ nodeAlignment: right
21
+ prefix: '('
22
+ suffix: ' genes)'
23
+---
24
+sankey-beta
25
+This study, DLBCL Tier 1,
26
+This study, DLBCL Tier 2, 1
27
+Other DLBCL studies, DLBCL Tier 1, 128
28
+Other DLBCL studies, DLBCL Tier 2, 198
29
+```
30
+
12 31
13 32
## Novel genes reported in this study
14 33
lakeMutationsNFKBIAEncoding2009.md
... ...
@@ -9,6 +9,25 @@ bibliography: 'morinlab.bib'
9 9
|Entity| Tier 1 genes| Tier 2 genes|
10 10
|:-:|:-:|:-:|
11 11
|DLBCL|1||
12
+```mermaid
13
+---
14
+config:
15
+ sankey:
16
+ showValues: true
17
+ linkColor: target
18
+ width: 300
19
+ height: 300
20
+ nodeAlignment: right
21
+ prefix: '('
22
+ suffix: ' genes)'
23
+---
24
+sankey-beta
25
+This study, DLBCL Tier 1, 1
26
+This study, DLBCL Tier 2,
27
+Other DLBCL studies, DLBCL Tier 1, 128
28
+Other DLBCL studies, DLBCL Tier 2, 198
29
+```
30
+
12 31
13 32
## Novel genes reported in this study
14 33
lenzOncogenicCARD11Mutations2008.md
... ...
@@ -9,6 +9,25 @@ bibliography: 'morinlab.bib'
9 9
|Entity| Tier 1 genes| Tier 2 genes|
10 10
|:-:|:-:|:-:|
11 11
|DLBCL|1||
12
+```mermaid
13
+---
14
+config:
15
+ sankey:
16
+ showValues: true
17
+ linkColor: target
18
+ width: 300
19
+ height: 300
20
+ nodeAlignment: right
21
+ prefix: '('
22
+ suffix: ' genes)'
23
+---
24
+sankey-beta
25
+This study, DLBCL Tier 1, 1
26
+This study, DLBCL Tier 2,
27
+Other DLBCL studies, DLBCL Tier 1, 128
28
+Other DLBCL studies, DLBCL Tier 2, 198
29
+```
30
+
12 31
13 32
## Novel genes reported in this study
14 33
lohrDiscoveryPrioritizationSomatic2012a.md
... ...
@@ -9,6 +9,25 @@ bibliography: 'morinlab.bib'
9 9
|Entity| Tier 1 genes| Tier 2 genes|
10 10
|:-:|:-:|:-:|
11 11
|DLBCL|3|1|
12
+```mermaid
13
+---
14
+config:
15
+ sankey:
16
+ showValues: true
17
+ linkColor: target
18
+ width: 300
19
+ height: 300
20
+ nodeAlignment: right
21
+ prefix: '('
22
+ suffix: ' genes)'
23
+---
24
+sankey-beta
25
+This study, DLBCL Tier 1, 3
26
+This study, DLBCL Tier 2, 1
27
+Other DLBCL studies, DLBCL Tier 1, 128
28
+Other DLBCL studies, DLBCL Tier 2, 198
29
+```
30
+
12 31
13 32
## Novel genes reported in this study
14 33
louissaintPediatrictypeNodalFollicular2016a.md
... ...
@@ -9,6 +9,25 @@ bibliography: 'morinlab.bib'
9 9
|Entity| Tier 1 genes| Tier 2 genes|
10 10
|:-:|:-:|:-:|
11 11
|FL|1||
12
+```mermaid
13
+---
14
+config:
15
+ sankey:
16
+ showValues: true
17
+ linkColor: target
18
+ width: 300
19
+ height: 300
20
+ nodeAlignment: right
21
+ prefix: '('
22
+ suffix: ' genes)'
23
+---
24
+sankey-beta
25
+This study, FL Tier 1, 1
26
+This study, FL Tier 2,
27
+Other FL studies, FL Tier 1, 66
28
+Other FL studies, FL Tier 2, 50
29
+```
30
+
12 31
13 32
## Novel genes reported in this study
14 33
loveGeneticLandscapeMutations2012.md
... ...
@@ -9,6 +9,25 @@ bibliography: 'morinlab.bib'
9 9
|Entity| Tier 1 genes| Tier 2 genes|
10 10
|:-:|:-:|:-:|
11 11
|BL|3|56|
12
+```mermaid
13
+---
14
+config:
15
+ sankey:
16
+ showValues: true
17
+ linkColor: target
18
+ width: 300
19
+ height: 300
20
+ nodeAlignment: right
21
+ prefix: '('
22
+ suffix: ' genes)'
23
+---
24
+sankey-beta
25
+This study, BL Tier 1, 3
26
+This study, BL Tier 2, 56
27
+Other BL studies, BL Tier 1, 29
28
+Other BL studies, BL Tier 2, 157
29
+```
30
+
12 31
13 32
## Novel genes reported in this study
14 33
mansouriFrequentNFKBIEDeletions2016.md
... ...
@@ -9,6 +9,25 @@ bibliography: 'morinlab.bib'
9 9
|Entity| Tier 1 genes| Tier 2 genes|
10 10
|:-:|:-:|:-:|
11 11
|PMBL|1||
12
+```mermaid
13
+---
14
+config:
15
+ sankey:
16
+ showValues: true
17
+ linkColor: target
18
+ width: 300
19
+ height: 300
20
+ nodeAlignment: right
21
+ prefix: '('
22
+ suffix: ' genes)'
23
+---
24
+sankey-beta
25
+This study, PMBL Tier 1, 1
26
+This study, PMBL Tier 2,
27
+Other PMBL studies, PMBL Tier 1, 76
28
+Other PMBL studies, PMBL Tier 2, 82
29
+```
30
+
12 31
13 32
## Novel genes reported in this study
14 33
mareschalWholeExomeSequencing2016.md
... ...
@@ -9,6 +9,25 @@ bibliography: 'morinlab.bib'
9 9
|Entity| Tier 1 genes| Tier 2 genes|
10 10
|:-:|:-:|:-:|
11 11
|DLBCL|2||
12
+```mermaid
13
+---
14
+config:
15
+ sankey:
16
+ showValues: true
17
+ linkColor: target
18
+ width: 300
19
+ height: 300
20
+ nodeAlignment: right
21
+ prefix: '('
22
+ suffix: ' genes)'
23
+---
24
+sankey-beta
25
+This study, DLBCL Tier 1, 2
26
+This study, DLBCL Tier 2,
27
+Other DLBCL studies, DLBCL Tier 1, 128
28
+Other DLBCL studies, DLBCL Tier 2, 198
29
+```
30
+
12 31
13 32
## Novel genes reported in this study
14 33
morinGeneticLandscapesRelapsed2016.md
... ...
@@ -9,6 +9,25 @@ bibliography: 'morinlab.bib'
9 9
|Entity| Tier 1 genes| Tier 2 genes|
10 10
|:-:|:-:|:-:|
11 11
|DLBCL|2||
12
+```mermaid
13
+---
14
+config:
15
+ sankey:
16
+ showValues: true
17
+ linkColor: target
18
+ width: 300
19
+ height: 300
20
+ nodeAlignment: right
21
+ prefix: '('
22
+ suffix: ' genes)'
23
+---
24
+sankey-beta
25
+This study, DLBCL Tier 1, 2
26
+This study, DLBCL Tier 2,
27
+Other DLBCL studies, DLBCL Tier 1, 128
28
+Other DLBCL studies, DLBCL Tier 2, 198
29
+```
30
+
12 31
13 32
## Novel genes reported in this study
14 33
morinMutationalStructuralAnalysis2013.md
... ...
@@ -9,6 +9,25 @@ bibliography: 'morinlab.bib'
9 9
|Entity| Tier 1 genes| Tier 2 genes|
10 10
|:-:|:-:|:-:|
11 11
|DLBCL|11|29|
12
+```mermaid
13
+---
14
+config:
15
+ sankey:
16
+ showValues: true
17
+ linkColor: target
18
+ width: 300
19
+ height: 300
20
+ nodeAlignment: right
21
+ prefix: '('
22
+ suffix: ' genes)'
23
+---
24
+sankey-beta
25
+This study, DLBCL Tier 1, 11
26
+This study, DLBCL Tier 2, 29
27
+Other DLBCL studies, DLBCL Tier 1, 128
28
+Other DLBCL studies, DLBCL Tier 2, 198
29
+```
30
+
12 31
13 32
## Novel genes reported in this study
14 33
morinSomaticMutationsAltering2010a.md
... ...
@@ -10,6 +10,25 @@ bibliography: 'morinlab.bib'
10 10
|:-:|:-:|:-:|
11 11
|DLBCL|1||
12 12
|FL|1||
13
+```mermaid
14
+---
15
+config:
16
+ sankey:
17
+ showValues: true
18
+ linkColor: target
19
+ width: 300
20
+ height: 300
21
+ nodeAlignment: right
22
+ prefix: '('
23
+ suffix: ' genes)'
24
+---
25
+sankey-beta
26
+This study, DLBCL Tier 1, 1
27
+This study, DLBCL Tier 2,
28
+Other DLBCL studies, DLBCL Tier 1, 128
29
+Other DLBCL studies, DLBCL Tier 2, 198
30
+```
31
+
13 32
14 33
## Novel genes reported in this study
15 34
mottokGenomicAlterationsCIITA2015b.md
... ...
@@ -9,6 +9,25 @@ bibliography: 'morinlab.bib'
9 9
|Entity| Tier 1 genes| Tier 2 genes|
10 10
|:-:|:-:|:-:|
11 11
|PMBL|1||
12
+```mermaid
13
+---
14
+config:
15
+ sankey:
16
+ showValues: true
17
+ linkColor: target
18
+ width: 300
19
+ height: 300
20
+ nodeAlignment: right
21
+ prefix: '('
22
+ suffix: ' genes)'
23
+---
24
+sankey-beta
25
+This study, PMBL Tier 1, 1
26
+This study, PMBL Tier 2,
27
+Other PMBL studies, PMBL Tier 1, 76
28
+Other PMBL studies, PMBL Tier 2, 82
29
+```
30
+
12 31
13 32
## Novel genes reported in this study
14 33
mottokIntegrativeGenomicAnalysis2019b.md
... ...
@@ -9,6 +9,25 @@ bibliography: 'morinlab.bib'
9 9
|Entity| Tier 1 genes| Tier 2 genes|
10 10
|:-:|:-:|:-:|
11 11
|PMBL|6|15|
12
+```mermaid
13
+---
14
+config:
15
+ sankey:
16
+ showValues: true
17
+ linkColor: target
18
+ width: 300
19
+ height: 300
20
+ nodeAlignment: right
21
+ prefix: '('
22
+ suffix: ' genes)'
23
+---
24
+sankey-beta
25
+This study, PMBL Tier 1, 6
26
+This study, PMBL Tier 2, 15
27
+Other PMBL studies, PMBL Tier 1, 76
28
+Other PMBL studies, PMBL Tier 2, 82
29
+```
30
+
12 31
13 32
## Novel genes reported in this study
14 33
muppidiLossSignalingGa132014b.md
... ...
@@ -9,6 +9,25 @@ bibliography: 'morinlab.bib'
9 9
|Entity| Tier 1 genes| Tier 2 genes|
10 10
|:-:|:-:|:-:|
11 11
|BL|1|2|
12
+```mermaid
13
+---
14
+config:
15
+ sankey:
16
+ showValues: true
17
+ linkColor: target
18
+ width: 300
19
+ height: 300
20
+ nodeAlignment: right
21
+ prefix: '('
22
+ suffix: ' genes)'
23
+---
24
+sankey-beta
25
+This study, BL Tier 1, 1
26
+This study, BL Tier 2, 2
27
+Other BL studies, BL Tier 1, 29
28
+Other BL studies, BL Tier 2, 157
29
+```
30
+
12 31
13 32
## Novel genes reported in this study
14 33
nadeuGenomicEpigenomicInsights2020b.md
... ...
@@ -9,6 +9,25 @@ bibliography: 'morinlab.bib'
9 9
|Entity| Tier 1 genes| Tier 2 genes|
10 10
|:-:|:-:|:-:|
11 11
|MCL|3|2|
12
+```mermaid
13
+---
14
+config:
15
+ sankey:
16
+ showValues: true
17
+ linkColor: target
18
+ width: 300
19
+ height: 300
20
+ nodeAlignment: right
21
+ prefix: '('
22
+ suffix: ' genes)'
23
+---
24
+sankey-beta
25
+This study, MCL Tier 1, 3
26
+This study, MCL Tier 2, 2
27
+Other MCL studies, MCL Tier 1, 23
28
+Other MCL studies, MCL Tier 2, 46
29
+```
30
+
12 31
13 32
## Novel genes reported in this study
14 33
ngoOncogenicallyActiveMYD882011a.md
... ...
@@ -9,6 +9,25 @@ bibliography: 'morinlab.bib'
9 9
|Entity| Tier 1 genes| Tier 2 genes|
10 10
|:-:|:-:|:-:|
11 11
|DLBCL|1||
12
+```mermaid
13
+---
14
+config:
15
+ sankey:
16
+ showValues: true
17
+ linkColor: target
18
+ width: 300
19
+ height: 300
20
+ nodeAlignment: right
21
+ prefix: '('
22
+ suffix: ' genes)'
23
+---
24
+sankey-beta
25
+This study, DLBCL Tier 1, 1
26
+This study, DLBCL Tier 2,
27
+Other DLBCL studies, DLBCL Tier 1, 128
28
+Other DLBCL studies, DLBCL Tier 2, 198
29
+```
30
+
12 31
13 32
## Novel genes reported in this study
14 33
ohgamiSTAT3MutationsAre2014.md
... ...
@@ -9,6 +9,25 @@ bibliography: 'morinlab.bib'
9 9
|Entity| Tier 1 genes| Tier 2 genes|
10 10
|:-:|:-:|:-:|
11 11
|DLBCL|1||
12
+```mermaid
13
+---
14
+config:
15
+ sankey:
16
+ showValues: true
17
+ linkColor: target
18
+ width: 300
19
+ height: 300
20
+ nodeAlignment: right
21
+ prefix: '('
22
+ suffix: ' genes)'
23
+---
24
+sankey-beta
25
+This study, DLBCL Tier 1, 1
26
+This study, DLBCL Tier 2,
27
+Other DLBCL studies, DLBCL Tier 1, 128
28
+Other DLBCL studies, DLBCL Tier 2, 198
29
+```
30
+
12 31
13 32
## Novel genes reported in this study
14 33
okosunRecurrentMTORC1activatingRRAGC2016a.md
... ...
@@ -10,6 +10,25 @@ bibliography: 'morinlab.bib'
10 10
|:-:|:-:|:-:|
11 11
|DLBCL|1||
12 12
|FL|3||
13
+```mermaid
14
+---
15
+config:
16
+ sankey:
17
+ showValues: true
18
+ linkColor: target
19
+ width: 300
20
+ height: 300
21
+ nodeAlignment: right
22
+ prefix: '('
23
+ suffix: ' genes)'
24
+---
25
+sankey-beta
26
+This study, FL Tier 1, 3
27
+This study, FL Tier 2,
28
+Other FL studies, FL Tier 1, 66
29
+Other FL studies, FL Tier 2, 50
30
+```
31
+
13 32
14 33
## Novel genes reported in this study
15 34
oricchioGeneticEpigeneticInactivation2017b.md
... ...
@@ -9,6 +9,25 @@ bibliography: 'morinlab.bib'
9 9
|Entity| Tier 1 genes| Tier 2 genes|
10 10
|:-:|:-:|:-:|
11 11
|FL||1|
12
+```mermaid
13
+---
14
+config:
15
+ sankey:
16
+ showValues: true
17
+ linkColor: target
18
+ width: 300
19
+ height: 300
20
+ nodeAlignment: right
21
+ prefix: '('
22
+ suffix: ' genes)'
23
+---
24
+sankey-beta
25
+This study, FL Tier 1,
26
+This study, FL Tier 2, 1
27
+Other FL studies, FL Tier 1, 66
28
+Other FL studies, FL Tier 2, 50
29
+```
30
+
12 31
13 32
## Novel genes reported in this study
14 33
ottoGeneticLesionsTRAF32012a.md
... ...
@@ -9,6 +9,25 @@ bibliography: 'morinlab.bib'
9 9
|Entity| Tier 1 genes| Tier 2 genes|
10 10
|:-:|:-:|:-:|
11 11
|PMBL|2||
12
+```mermaid
13
+---
14
+config:
15
+ sankey:
16
+ showValues: true
17
+ linkColor: target
18
+ width: 300
19
+ height: 300
20
+ nodeAlignment: right
21
+ prefix: '('
22
+ suffix: ' genes)'
23
+---
24
+sankey-beta
25
+This study, PMBL Tier 1, 2
26
+This study, PMBL Tier 2,
27
+Other PMBL studies, PMBL Tier 1, 76
28
+Other PMBL studies, PMBL Tier 2, 82
29
+```
30
+
12 31
13 32
## Novel genes reported in this study
14 33
paneaWholeGenomeLandscape2019.md
... ...
@@ -9,6 +9,25 @@ bibliography: 'morinlab.bib'
9 9
|Entity| Tier 1 genes| Tier 2 genes|
10 10
|:-:|:-:|:-:|
11 11
|BL|4|46|
12
+```mermaid
13
+---
14
+config:
15
+ sankey:
16
+ showValues: true
17
+ linkColor: target
18
+ width: 300
19
+ height: 300
20
+ nodeAlignment: right
21
+ prefix: '('
22
+ suffix: ' genes)'
23
+---
24
+sankey-beta
25
+This study, BL Tier 1, 4
26
+This study, BL Tier 2, 46
27
+Other BL studies, BL Tier 1, 29
28
+Other BL studies, BL Tier 2, 157
29
+```
30
+
12 31
13 32
## Novel genes reported in this study
14 33
pararajalingamCodingNoncodingDrivers2020.md
... ...
@@ -8,20 +8,39 @@ bibliography: 'morinlab.bib'
8 8
9 9
|Entity| Tier 1 genes| Tier 2 genes|
10 10
|:-:|:-:|:-:|
11
-|DLBCL|2|3|
12 11
|MCL|6|1|
12
+|DLBCL|2|3|
13
+```mermaid
14
+---
15
+config:
16
+ sankey:
17
+ showValues: true
18
+ linkColor: target
19
+ width: 300
20
+ height: 300
21
+ nodeAlignment: right
22
+ prefix: '('
23
+ suffix: ' genes)'
24
+---
25
+sankey-beta
26
+This study, MCL Tier 1, 6
27
+This study, MCL Tier 2, 1
28
+Other MCL studies, MCL Tier 1, 23
29
+Other MCL studies, MCL Tier 2, 46
30
+```
31
+
13 32
14 33
## Novel genes reported in this study
15 34
16
-|New gene|DLBCL tier|MCL tier|
35
+|New gene|MCL tier|DLBCL tier|
17 36
|:-|:-:|:-:|
18
-|[B2M](B2M)|1 |2 |
19
-|[DAZAP1](DAZAP1)|2 |1 |
20
-|[EWSR1](EWSR1)| |1 |
21
-|[HNRNPH1](HNRNPH1)|2 |1 |
37
+|[B2M](B2M)|2 |1 |
38
+|[DAZAP1](DAZAP1)|1 |2 |
39
+|[EWSR1](EWSR1)|1 | |
40
+|[HNRNPH1](HNRNPH1)|1 |2 |
22 41
|[NFKBIE](NFKBIE)|1 |1 |
23
-|[S1PR1](S1PR1)| |1 |
24
-|[UBR5](UBR5)|2 |1 |
42
+|[S1PR1](S1PR1)|1 | |
43
+|[UBR5](UBR5)|1 |2 |
25 44
26 45
# Details
27 46
parryWholeExomeSequencing2013.md
... ...
@@ -8,21 +8,40 @@ bibliography: 'morinlab.bib'
8 8
9 9
|Entity| Tier 1 genes| Tier 2 genes|
10 10
|:-:|:-:|:-:|
11
-|DLBCL|3|1|
12 11
|MZL||8|
12
+|DLBCL|3|1|
13
+```mermaid
14
+---
15
+config:
16
+ sankey:
17
+ showValues: true
18
+ linkColor: target
19
+ width: 300
20
+ height: 300
21
+ nodeAlignment: right
22
+ prefix: '('
23
+ suffix: ' genes)'
24
+---
25
+sankey-beta
26
+This study, MZL Tier 1,
27
+This study, MZL Tier 2, 8
28
+Other MZL studies, MZL Tier 1, 42
29
+Other MZL studies, MZL Tier 2, 74
30
+```
31
+
13 32
14 33
## Novel genes reported in this study
15 34
16
-|New gene|DLBCL tier|MZL tier|
35
+|New gene|MZL tier|DLBCL tier|
17 36
|:-|:-:|:-:|
18
-|[AMOTL1](AMOTL1)| |2 |
19
-|[CBFA2T3](CBFA2T3)| |2 |
20
-|[CREBBP](CREBBP)|1 |2 |
37
+|[AMOTL1](AMOTL1)|2 | |
38
+|[CBFA2T3](CBFA2T3)|2 | |
39
+|[CREBBP](CREBBP)|2 |1 |
21 40
|[FAT4](FAT4)|2 |2 |
22
-|[FBXO11](FBXO11)|1 |2 |
23
-|[PLA2G4D](PLA2G4D)| |2 |
24
-|[TRRAP](TRRAP)|1 |2 |
25
-|[USH2A](USH2A)| |2 |
41
+|[FBXO11](FBXO11)|2 |1 |
42
+|[PLA2G4D](PLA2G4D)|2 | |
43
+|[TRRAP](TRRAP)|2 |1 |
44
+|[USH2A](USH2A)|2 | |
26 45
27 46
# Details
28 47
pasqualucciAnalysisCodingGenome2011.md
... ...
@@ -9,6 +9,25 @@ bibliography: 'morinlab.bib'
9 9
|Entity| Tier 1 genes| Tier 2 genes|
10 10
|:-:|:-:|:-:|
11 11
|DLBCL|3|4|
12
+```mermaid
13
+---
14
+config:
15
+ sankey:
16
+ showValues: true
17
+ linkColor: target
18
+ width: 300
19
+ height: 300
20
+ nodeAlignment: right
21
+ prefix: '('
22
+ suffix: ' genes)'
23
+---
24
+sankey-beta
25
+This study, DLBCL Tier 1, 3
26
+This study, DLBCL Tier 2, 4
27
+Other DLBCL studies, DLBCL Tier 1, 128
28
+Other DLBCL studies, DLBCL Tier 2, 198
29
+```
30
+
12 31
13 32
## Novel genes reported in this study
14 33
pasqualucciHypermutationMultipleProtooncogenes2001a.md
... ...
@@ -9,6 +9,25 @@ bibliography: 'morinlab.bib'
9 9
|Entity| Tier 1 genes| Tier 2 genes|
10 10
|:-:|:-:|:-:|
11 11
|DLBCL|2|2|
12
+```mermaid
13
+---
14
+config:
15
+ sankey:
16
+ showValues: true
17
+ linkColor: target
18
+ width: 300
19
+ height: 300
20
+ nodeAlignment: right
21
+ prefix: '('
22
+ suffix: ' genes)'
23
+---
24
+sankey-beta
25
+This study, DLBCL Tier 1, 2
26
+This study, DLBCL Tier 2, 2
27
+Other DLBCL studies, DLBCL Tier 1, 128
28
+Other DLBCL studies, DLBCL Tier 2, 198
29
+```
30
+
12 31
13 32
## Novel genes reported in this study
14 33
pasqualucciInactivatingMutationsAcetyltransferase2011a.md
... ...
@@ -10,6 +10,25 @@ bibliography: 'morinlab.bib'
10 10
|:-:|:-:|:-:|
11 11
|FL|2||
12 12
|DLBCL|2||
13
+```mermaid
14
+---
15
+config:
16
+ sankey:
17
+ showValues: true
18
+ linkColor: target
19
+ width: 300
20
+ height: 300
21
+ nodeAlignment: right
22
+ prefix: '('
23
+ suffix: ' genes)'
24
+---
25
+sankey-beta
26
+This study, FL Tier 1, 2
27
+This study, FL Tier 2,
28
+Other FL studies, FL Tier 1, 66
29
+Other FL studies, FL Tier 2, 50
30
+```
31
+
13 32
14 33
## Novel genes reported in this study
15 34
pasqualucciInactivationPRDM1BLIMP12006a.md
... ...
@@ -9,6 +9,25 @@ bibliography: 'morinlab.bib'
9 9
|Entity| Tier 1 genes| Tier 2 genes|
10 10
|:-:|:-:|:-:|
11 11
|DLBCL|1||
12
+```mermaid
13
+---
14
+config:
15
+ sankey:
16
+ showValues: true
17
+ linkColor: target
18
+ width: 300
19
+ height: 300
20
+ nodeAlignment: right
21
+ prefix: '('
22
+ suffix: ' genes)'
23
+---
24
+sankey-beta
25
+This study, DLBCL Tier 1, 1
26
+This study, DLBCL Tier 2,
27
+Other DLBCL studies, DLBCL Tier 1, 128
28
+Other DLBCL studies, DLBCL Tier 2, 198
29
+```
30
+
12 31
13 32
## Novel genes reported in this study
14 33
reddyGeneticFunctionalDrivers2017.md
... ...
@@ -9,6 +9,25 @@ bibliography: 'morinlab.bib'
9 9
|Entity| Tier 1 genes| Tier 2 genes|
10 10
|:-:|:-:|:-:|
11 11
|DLBCL|7|53|
12
+```mermaid
13
+---
14
+config:
15
+ sankey:
16
+ showValues: true
17
+ linkColor: target
18
+ width: 300
19
+ height: 300
20
+ nodeAlignment: right
21
+ prefix: '('
22
+ suffix: ' genes)'
23
+---
24
+sankey-beta
25
+This study, DLBCL Tier 1, 7
26
+This study, DLBCL Tier 2, 53
27
+Other DLBCL studies, DLBCL Tier 1, 128
28
+Other DLBCL studies, DLBCL Tier 2, 198
29
+```
30
+
12 31
13 32
## Novel genes reported in this study
14 33
reichelFlowSortingExome2015a.md
... ...
@@ -9,6 +9,25 @@ bibliography: 'morinlab.bib'
9 9
|Entity| Tier 1 genes| Tier 2 genes|
10 10
|:-:|:-:|:-:|
11 11
|PMBL|11|18|
12
+```mermaid
13
+---
14
+config:
15
+ sankey:
16
+ showValues: true
17
+ linkColor: target
18
+ width: 300
19
+ height: 300
20
+ nodeAlignment: right
21
+ prefix: '('
22
+ suffix: ' genes)'
23
+---
24
+sankey-beta
25
+This study, PMBL Tier 1, 11
26
+This study, PMBL Tier 2, 18
27
+Other PMBL studies, PMBL Tier 1, 76
28
+Other PMBL studies, PMBL Tier 2, 82
29
+```
30
+
12 31
13 32
## Novel genes reported in this study
14 33
richterRecurrentMutationID32012a.md
... ...
@@ -9,6 +9,25 @@ bibliography: 'morinlab.bib'
9 9
|Entity| Tier 1 genes| Tier 2 genes|
10 10
|:-:|:-:|:-:|
11 11
|BL|5||
12
+```mermaid
13
+---
14
+config:
15
+ sankey:
16
+ showValues: true
17
+ linkColor: target
18
+ width: 300
19
+ height: 300
20
+ nodeAlignment: right
21
+ prefix: '('
22
+ suffix: ' genes)'
23
+---
24
+sankey-beta
25
+This study, BL Tier 1, 5
26
+This study, BL Tier 2,
27
+Other BL studies, BL Tier 1, 29
28
+Other BL studies, BL Tier 2, 157
29
+```
30
+
12 31
13 32
## Novel genes reported in this study
14 33
ritzRecurrentMutationsSTAT62009a.md
... ...
@@ -9,6 +9,25 @@ bibliography: 'morinlab.bib'
9 9
|Entity| Tier 1 genes| Tier 2 genes|
10 10
|:-:|:-:|:-:|
11 11
|PMBL|1||
12
+```mermaid
13
+---
14
+config:
15
+ sankey:
16
+ showValues: true
17
+ linkColor: target
18
+ width: 300
19
+ height: 300
20
+ nodeAlignment: right
21
+ prefix: '('
22
+ suffix: ' genes)'
23
+---
24
+sankey-beta
25
+This study, PMBL Tier 1, 1
26
+This study, PMBL Tier 2,
27
+Other PMBL studies, PMBL Tier 1, 76
28
+Other PMBL studies, PMBL Tier 2, 82
29
+```
30
+
12 31
13 32
## Novel genes reported in this study
14 33
rossiAlterationBIRC3Multiple2011a.md
... ...
@@ -9,6 +9,25 @@ bibliography: 'morinlab.bib'
9 9
|Entity| Tier 1 genes| Tier 2 genes|
10 10
|:-:|:-:|:-:|
11 11
|MZL|4|1|
12
+```mermaid
13
+---
14
+config:
15
+ sankey:
16
+ showValues: true
17
+ linkColor: target
18
+ width: 300
19
+ height: 300
20
+ nodeAlignment: right
21
+ prefix: '('
22
+ suffix: ' genes)'
23
+---
24
+sankey-beta
25
+This study, MZL Tier 1, 4
26
+This study, MZL Tier 2, 1
27
+Other MZL studies, MZL Tier 1, 42
28
+Other MZL studies, MZL Tier 2, 74
29
+```
30
+
12 31
13 32
## Novel genes reported in this study
14 33
rossiCodingGenomeSplenic2012c.md
... ...
@@ -10,6 +10,25 @@ bibliography: 'morinlab.bib'
10 10
|:-:|:-:|:-:|
11 11
|DLBCL|12|2|
12 12
|MZL|10|11|
13
+```mermaid
14
+---
15
+config:
16
+ sankey:
17
+ showValues: true
18
+ linkColor: target
19
+ width: 300
20
+ height: 300
21
+ nodeAlignment: right
22
+ prefix: '('
23
+ suffix: ' genes)'
24
+---
25
+sankey-beta
26
+This study, MZL Tier 1, 10
27
+This study, MZL Tier 2, 11
28
+Other MZL studies, MZL Tier 1, 42
29
+Other MZL studies, MZL Tier 2, 74
30
+```
31
+
13 32
14 33
## Novel genes reported in this study
15 34
rushtonGeneticEvolutionaryPatterns2020.md
... ...
@@ -9,6 +9,25 @@ bibliography: 'morinlab.bib'
9 9
|Entity| Tier 1 genes| Tier 2 genes|
10 10
|:-:|:-:|:-:|
11 11
|DLBCL|1||
12
+```mermaid
13
+---
14
+config:
15
+ sankey:
16
+ showValues: true
17
+ linkColor: target
18
+ width: 300
19
+ height: 300
20
+ nodeAlignment: right
21
+ prefix: '('
22
+ suffix: ' genes)'
23
+---
24
+sankey-beta
25
+This study, DLBCL Tier 1, 1
26
+This study, DLBCL Tier 2,
27
+Other DLBCL studies, DLBCL Tier 1, 128
28
+Other DLBCL studies, DLBCL Tier 2, 198
29
+```
30
+
12 31
13 32
## Novel genes reported in this study
14 33
russler-germainMutationsAssociatedProgression2023b.md
... ...
@@ -9,6 +9,25 @@ bibliography: 'morinlab.bib'
9 9
|Entity| Tier 1 genes| Tier 2 genes|
10 10
|:-:|:-:|:-:|
11 11
|FL|1|19|
12
+```mermaid
13
+---
14
+config:
15
+ sankey:
16
+ showValues: true
17
+ linkColor: target
18
+ width: 300
19
+ height: 300
20
+ nodeAlignment: right
21
+ prefix: '('
22
+ suffix: ' genes)'
23
+---
24
+sankey-beta
25
+This study, FL Tier 1, 1
26
+This study, FL Tier 2, 19
27
+Other FL studies, FL Tier 1, 66
28
+Other FL studies, FL Tier 2, 50
29
+```
30
+
12 31
13 32
## Novel genes reported in this study
14 33
sarkozyMutationalLandscapeGray2021a.md
... ...
@@ -9,6 +9,25 @@ bibliography: 'morinlab.bib'
9 9
|Entity| Tier 1 genes| Tier 2 genes|
10 10
|:-:|:-:|:-:|
11 11
|PMBL|5|6|
12
+```mermaid
13
+---
14
+config:
15
+ sankey:
16
+ showValues: true
17
+ linkColor: target
18
+ width: 300
19
+ height: 300
20
+ nodeAlignment: right
21
+ prefix: '('
22
+ suffix: ' genes)'
23
+---
24
+sankey-beta
25
+This study, PMBL Tier 1, 5
26
+This study, PMBL Tier 2, 6
27
+Other PMBL studies, PMBL Tier 1, 76
28
+Other PMBL studies, PMBL Tier 2, 82
29
+```
30
+
12 31
13 32
## Novel genes reported in this study
14 33
schmitzBurkittLymphomaPathogenesis2012.md
... ...
@@ -10,6 +10,25 @@ bibliography: 'morinlab.bib'
10 10
|:-:|:-:|:-:|
11 11
|BL|4|16|
12 12
|DLBCL|2|3|
13
+```mermaid
14
+---
15
+config:
16
+ sankey:
17
+ showValues: true
18
+ linkColor: target
19
+ width: 300
20
+ height: 300
21
+ nodeAlignment: right
22
+ prefix: '('
23
+ suffix: ' genes)'
24
+---
25
+sankey-beta
26
+This study, BL Tier 1, 4
27
+This study, BL Tier 2, 16
28
+Other BL studies, BL Tier 1, 29
29
+Other BL studies, BL Tier 2, 157
30
+```
31
+
13 32
14 33
## Novel genes reported in this study
15 34
schmitzGeneticsPathogenesisDiffuse2018a.md
... ...
@@ -9,6 +9,25 @@ bibliography: 'morinlab.bib'
9 9
|Entity| Tier 1 genes| Tier 2 genes|
10 10
|:-:|:-:|:-:|
11 11
|DLBCL|7|9|
12
+```mermaid
13
+---
14
+config:
15
+ sankey:
16
+ showValues: true
17
+ linkColor: target
18
+ width: 300
19
+ height: 300
20
+ nodeAlignment: right
21
+ prefix: '('
22
+ suffix: ' genes)'
23
+---
24
+sankey-beta
25
+This study, DLBCL Tier 1, 7
26
+This study, DLBCL Tier 2, 9
27
+Other DLBCL studies, DLBCL Tier 1, 128
28
+Other DLBCL studies, DLBCL Tier 2, 198
29
+```
30
+
12 31
13 32
## Novel genes reported in this study
14 33
schmitzTNFAIP3A20Tumor2009a.md
... ...
@@ -9,6 +9,25 @@ bibliography: 'morinlab.bib'
9 9
|Entity| Tier 1 genes| Tier 2 genes|
10 10
|:-:|:-:|:-:|
11 11
|PMBL|1||
12
+```mermaid
13
+---
14
+config:
15
+ sankey:
16
+ showValues: true
17
+ linkColor: target
18
+ width: 300
19
+ height: 300
20
+ nodeAlignment: right
21
+ prefix: '('
22
+ suffix: ' genes)'
23
+---
24
+sankey-beta
25
+This study, PMBL Tier 1, 1
26
+This study, PMBL Tier 2,
27
+Other PMBL studies, PMBL Tier 1, 76
28
+Other PMBL studies, PMBL Tier 2, 82
29
+```
30
+
12 31
13 32
## Novel genes reported in this study
14 33
schneiderAlterationsCD58Gene2015a.md
... ...
@@ -9,6 +9,25 @@ bibliography: 'morinlab.bib'
9 9
|Entity| Tier 1 genes| Tier 2 genes|
10 10
|:-:|:-:|:-:|
11 11
|PMBL|1||
12
+```mermaid
13
+---
14
+config:
15
+ sankey:
16
+ showValues: true
17
+ linkColor: target
18
+ width: 300
19
+ height: 300
20
+ nodeAlignment: right
21
+ prefix: '('
22
+ suffix: ' genes)'
23
+---
24
+sankey-beta
25
+This study, PMBL Tier 1, 1
26
+This study, PMBL Tier 2,
27
+Other PMBL studies, PMBL Tier 1, 76
28
+Other PMBL studies, PMBL Tier 2, 82
29
+```
30
+
12 31
13 32
## Novel genes reported in this study
14 33
schollMutationsRegionFAS2007.md
... ...
@@ -9,6 +9,25 @@ bibliography: 'morinlab.bib'
9 9
|Entity| Tier 1 genes| Tier 2 genes|
10 10
|:-:|:-:|:-:|
11 11
|DLBCL|1||
12
+```mermaid
13
+---
14
+config:
15
+ sankey:
16
+ showValues: true
17
+ linkColor: target
18
+ width: 300
19
+ height: 300
20
+ nodeAlignment: right
21
+ prefix: '('
22
+ suffix: ' genes)'
23
+---
24
+sankey-beta
25
+This study, DLBCL Tier 1, 1
26
+This study, DLBCL Tier 2,
27
+Other DLBCL studies, DLBCL Tier 1, 128
28
+Other DLBCL studies, DLBCL Tier 2, 198
29
+```
30
+
12 31
13 32
## Novel genes reported in this study
14 33
shinBRAFV600EMAP2K12015.md
... ...
@@ -9,6 +9,25 @@ bibliography: 'morinlab.bib'
9 9
|Entity| Tier 1 genes| Tier 2 genes|
10 10
|:-:|:-:|:-:|
11 11
|DLBCL||1|
12
+```mermaid
13
+---
14
+config:
15
+ sankey:
16
+ showValues: true
17
+ linkColor: target
18
+ width: 300
19
+ height: 300
20
+ nodeAlignment: right
21
+ prefix: '('
22
+ suffix: ' genes)'
23
+---
24
+sankey-beta
25
+This study, DLBCL Tier 1,
26
+This study, DLBCL Tier 2, 1
27
+Other DLBCL studies, DLBCL Tier 1, 128
28
+Other DLBCL studies, DLBCL Tier 2, 198
29
+```
30
+
12 31
13 32
## Novel genes reported in this study
14 33
spinaGeneticsNodalMarginal2016b.md
... ...
@@ -9,6 +9,25 @@ bibliography: 'morinlab.bib'
9 9
|Entity| Tier 1 genes| Tier 2 genes|
10 10
|:-:|:-:|:-:|
11 11
|MZL|8|23|
12
+```mermaid
13
+---
14
+config:
15
+ sankey:
16
+ showValues: true
17
+ linkColor: target
18
+ width: 300
19
+ height: 300
20
+ nodeAlignment: right
21
+ prefix: '('
22
+ suffix: ' genes)'
23
+---
24
+sankey-beta
25
+This study, MZL Tier 1, 8
26
+This study, MZL Tier 2, 23
27
+Other MZL studies, MZL Tier 1, 42
28
+Other MZL studies, MZL Tier 2, 74
29
+```
30
+
12 31
13 32
## Novel genes reported in this study
14 33
thomasGeneticSubgroupsInform2023.md
... ...
@@ -9,6 +9,25 @@ bibliography: 'morinlab.bib'
9 9
|Entity| Tier 1 genes| Tier 2 genes|
10 10
|:-:|:-:|:-:|
11 11
|BL|2|3|
12
+```mermaid
13
+---
14
+config:
15
+ sankey:
16
+ showValues: true
17
+ linkColor: target
18
+ width: 300
19
+ height: 300
20
+ nodeAlignment: right
21
+ prefix: '('
22
+ suffix: ' genes)'
23
+---
24
+sankey-beta
25
+This study, BL Tier 1, 2
26
+This study, BL Tier 2, 3
27
+Other BL studies, BL Tier 1, 29
28
+Other BL studies, BL Tier 2, 157
29
+```
30
+
12 31
13 32
## Novel genes reported in this study
14 33
tiacciBRAFMutationsHairycell2011a.md
... ...
@@ -9,6 +9,25 @@ bibliography: 'morinlab.bib'
9 9
|Entity| Tier 1 genes| Tier 2 genes|
10 10
|:-:|:-:|:-:|
11 11
|DLBCL|1||
12
+```mermaid
13
+---
14
+config:
15
+ sankey:
16
+ showValues: true
17
+ linkColor: target
18
+ width: 300
19
+ height: 300
20
+ nodeAlignment: right
21
+ prefix: '('
22
+ suffix: ' genes)'
23
+---
24
+sankey-beta
25
+This study, DLBCL Tier 1, 1
26
+This study, DLBCL Tier 2,
27
+Other DLBCL studies, DLBCL Tier 1, 128
28
+Other DLBCL studies, DLBCL Tier 2, 198
29
+```
30
+
12 31
13 32
## Novel genes reported in this study
14 33
tiacciPervasiveMutationsJAKSTAT2018b.md
... ...
@@ -9,6 +9,25 @@ bibliography: 'morinlab.bib'
9 9
|Entity| Tier 1 genes| Tier 2 genes|
10 10
|:-:|:-:|:-:|
11 11
|PMBL|1|9|
12
+```mermaid
13
+---
14
+config:
15
+ sankey:
16
+ showValues: true
17
+ linkColor: target
18
+ width: 300
19
+ height: 300
20
+ nodeAlignment: right
21
+ prefix: '('
22
+ suffix: ' genes)'
23
+---
24
+sankey-beta
25
+This study, PMBL Tier 1, 1
26
+This study, PMBL Tier 2, 9
27
+Other PMBL studies, PMBL Tier 1, 76
28
+Other PMBL studies, PMBL Tier 2, 82
29
+```
30
+
12 31
13 32
## Novel genes reported in this study
14 33
troenNOTCH2MutationsMarginal2008.md
... ...
@@ -9,6 +9,25 @@ bibliography: 'morinlab.bib'
9 9
|Entity| Tier 1 genes| Tier 2 genes|
10 10
|:-:|:-:|:-:|
11 11
|DLBCL|1||
12
+```mermaid
13
+---
14
+config:
15
+ sankey:
16
+ showValues: true
17
+ linkColor: target
18
+ width: 300
19
+ height: 300
20
+ nodeAlignment: right
21
+ prefix: '('
22
+ suffix: ' genes)'
23
+---
24
+sankey-beta
25
+This study, DLBCL Tier 1, 1
26
+This study, DLBCL Tier 2,
27
+Other DLBCL studies, DLBCL Tier 1, 128
28
+Other DLBCL studies, DLBCL Tier 2, 198
29
+```
30
+
12 31
13 32
## Novel genes reported in this study
14 33
vandenbrandRecurrentMutationsGenes2017.md
... ...
@@ -9,6 +9,25 @@ bibliography: 'morinlab.bib'
9 9
|Entity| Tier 1 genes| Tier 2 genes|
10 10
|:-:|:-:|:-:|
11 11
|MZL||2|
12
+```mermaid
13
+---
14
+config:
15
+ sankey:
16
+ showValues: true
17
+ linkColor: target
18
+ width: 300
19
+ height: 300
20
+ nodeAlignment: right
21
+ prefix: '('
22
+ suffix: ' genes)'
23
+---
24
+sankey-beta
25
+This study, MZL Tier 1,
26
+This study, MZL Tier 2, 2
27
+Other MZL studies, MZL Tier 1, 42
28
+Other MZL studies, MZL Tier 2, 74
29
+```
30
+
12 31
13 32
## Novel genes reported in this study
14 33
viganoSomaticIL4RMutations2018b.md
... ...
@@ -9,6 +9,25 @@ bibliography: 'morinlab.bib'
9 9
|Entity| Tier 1 genes| Tier 2 genes|
10 10
|:-:|:-:|:-:|
11 11
|PMBL|1||
12
+```mermaid
13
+---
14
+config:
15
+ sankey:
16
+ showValues: true
17
+ linkColor: target
18
+ width: 300
19
+ height: 300
20
+ nodeAlignment: right
21
+ prefix: '('
22
+ suffix: ' genes)'
23
+---
24
+sankey-beta
25
+This study, PMBL Tier 1, 1
26
+This study, PMBL Tier 2,
27
+Other PMBL studies, PMBL Tier 1, 76
28
+Other PMBL studies, PMBL Tier 2, 82
29
+```
30
+
12 31
13 32
## Novel genes reported in this study
14 33
wenigerMutationsTumorSuppressor2006a.md
... ...
@@ -9,6 +9,25 @@ bibliography: 'morinlab.bib'
9 9
|Entity| Tier 1 genes| Tier 2 genes|
10 10
|:-:|:-:|:-:|
11 11
|PMBL|1|1|
12
+```mermaid
13
+---
14
+config:
15
+ sankey:
16
+ showValues: true
17
+ linkColor: target
18
+ width: 300
19
+ height: 300
20
+ nodeAlignment: right
21
+ prefix: '('
22
+ suffix: ' genes)'
23
+---
24
+sankey-beta
25
+This study, PMBL Tier 1, 1
26
+This study, PMBL Tier 2, 1
27
+Other PMBL studies, PMBL Tier 1, 76
28
+Other PMBL studies, PMBL Tier 2, 82
29
+```
30
+
12 31
13 32
## Novel genes reported in this study
14 33
wienandGenomicAnalysesFlowsorted2019b.md
... ...
@@ -9,6 +9,25 @@ bibliography: 'morinlab.bib'
9 9
|Entity| Tier 1 genes| Tier 2 genes|
10 10
|:-:|:-:|:-:|
11 11
|PMBL|4|3|
12
+```mermaid
13
+---
14
+config:
15
+ sankey:
16
+ showValues: true
17
+ linkColor: target
18
+ width: 300
19
+ height: 300
20
+ nodeAlignment: right
21
+ prefix: '('
22
+ suffix: ' genes)'
23
+---
24
+sankey-beta
25
+This study, PMBL Tier 1, 4
26
+This study, PMBL Tier 2, 3
27
+Other PMBL studies, PMBL Tier 1, 76
28
+Other PMBL studies, PMBL Tier 2, 82
29
+```
30
+
12 31
13 32
## Novel genes reported in this study
14 33
wildaInactivationARFMDM2p53Pathway2004.md
... ...
@@ -9,6 +9,25 @@ bibliography: 'morinlab.bib'
9 9
|Entity| Tier 1 genes| Tier 2 genes|
10 10
|:-:|:-:|:-:|
11 11
|BL|1||
12
+```mermaid
13
+---
14
+config:
15
+ sankey:
16
+ showValues: true
17
+ linkColor: target
18
+ width: 300
19
+ height: 300
20
+ nodeAlignment: right
21
+ prefix: '('
22
+ suffix: ' genes)'
23
+---
24
+sankey-beta
25
+This study, BL Tier 1, 1
26
+This study, BL Tier 2,
27
+Other BL studies, BL Tier 1, 29
28
+Other BL studies, BL Tier 2, 157
29
+```
30
+
12 31
13 32
## Novel genes reported in this study
14 33
wuGeneticHeterogeneityPrimary2016.md
... ...
@@ -9,6 +9,25 @@ bibliography: 'morinlab.bib'
9 9
|Entity| Tier 1 genes| Tier 2 genes|
10 10
|:-:|:-:|:-:|
11 11
|MCL|1||
12
+```mermaid
13
+---
14
+config:
15
+ sankey:
16
+ showValues: true
17
+ linkColor: target
18
+ width: 300
19
+ height: 300
20
+ nodeAlignment: right
21
+ prefix: '('
22
+ suffix: ' genes)'
23
+---
24
+sankey-beta
25
+This study, MCL Tier 1, 1
26
+This study, MCL Tier 2,
27
+Other MCL studies, MCL Tier 1, 23
28
+Other MCL studies, MCL Tier 2, 46
29
+```
30
+
12 31
13 32
## Novel genes reported in this study
14 33
yanBCRTLRSignaling2012a.md
... ...
@@ -9,6 +9,25 @@ bibliography: 'morinlab.bib'
9 9
|Entity| Tier 1 genes| Tier 2 genes|
10 10
|:-:|:-:|:-:|
11 11
|MZL|2||
12
+```mermaid
13
+---
14
+config:
15
+ sankey:
16
+ showValues: true
17
+ linkColor: target
18
+ width: 300
19
+ height: 300
20
+ nodeAlignment: right
21
+ prefix: '('
22
+ suffix: ' genes)'
23
+---
24
+sankey-beta
25
+This study, MZL Tier 1, 2
26
+This study, MZL Tier 2,
27
+Other MZL studies, MZL Tier 1, 42
28
+Other MZL studies, MZL Tier 2, 74
29
+```
30
+
12 31
13 32
## Novel genes reported in this study
14 33
yildizActivatingSTAT6Mutations2015c.md
... ...
@@ -8,12 +8,31 @@ bibliography: 'morinlab.bib'
8 8
9 9
|Entity| Tier 1 genes| Tier 2 genes|
10 10
|:-:|:-:|:-:|
11
-|DLBCL|1||
12 11
|FL|1||
12
+|DLBCL|1||
13
+```mermaid
14
+---
15
+config:
16
+ sankey:
17
+ showValues: true
18
+ linkColor: target
19
+ width: 300
20
+ height: 300
21
+ nodeAlignment: right
22
+ prefix: '('
23
+ suffix: ' genes)'
24
+---
25
+sankey-beta
26
+This study, DLBCL Tier 1, 1
27
+This study, DLBCL Tier 2,
28
+Other DLBCL studies, DLBCL Tier 1, 128
29
+Other DLBCL studies, DLBCL Tier 2, 198
30
+```
31
+
13 32
14 33
## Novel genes reported in this study
15 34
16
-|New gene|DLBCL tier|FL tier|
35
+|New gene|FL tier|DLBCL tier|
17 36
|:-|:-:|:-:|
18 37
|[STAT6](STAT6)|1 |1 |
19 38
zhangGeneticHeterogeneityDiffuse2013.md
... ...
@@ -9,6 +9,25 @@ bibliography: 'morinlab.bib'
9 9
|Entity| Tier 1 genes| Tier 2 genes|
10 10
|:-:|:-:|:-:|
11 11
|DLBCL|11|8|
12
+```mermaid
13
+---
14
+config:
15
+ sankey:
16
+ showValues: true
17
+ linkColor: target
18
+ width: 300
19
+ height: 300
20
+ nodeAlignment: right
21
+ prefix: '('
22
+ suffix: ' genes)'
23
+---
24
+sankey-beta
25
+This study, DLBCL Tier 1, 11
26
+This study, DLBCL Tier 2, 8
27
+Other DLBCL studies, DLBCL Tier 1, 128
28
+Other DLBCL studies, DLBCL Tier 2, 198
29
+```
30
+
12 31
13 32
## Novel genes reported in this study
14 33
zhangGenomicLandscapeMantle2014.md
... ...
@@ -9,6 +9,25 @@ bibliography: 'morinlab.bib'
9 9
|Entity| Tier 1 genes| Tier 2 genes|
10 10
|:-:|:-:|:-:|
11 11
|MCL|2|26|
12
+```mermaid
13
+---
14
+config:
15
+ sankey:
16
+ showValues: true
17
+ linkColor: target
18
+ width: 300
19
+ height: 300
20
+ nodeAlignment: right
21
+ prefix: '('
22
+ suffix: ' genes)'
23
+---
24
+sankey-beta
25
+This study, MCL Tier 1, 2
26
+This study, MCL Tier 2, 26
27
+Other MCL studies, MCL Tier 1, 23
28
+Other MCL studies, MCL Tier 2, 46
29
+```
30
+
12 31
13 32
## Novel genes reported in this study
14 33
zhouSporadicEndemicBurkitt2019.md
... ...
@@ -9,6 +9,25 @@ bibliography: 'morinlab.bib'
9 9
|Entity| Tier 1 genes| Tier 2 genes|
10 10
|:-:|:-:|:-:|
11 11
|BL||1|
12
+```mermaid
13
+---
14
+config:
15
+ sankey:
16
+ showValues: true
17
+ linkColor: target
18
+ width: 300
19
+ height: 300
20
+ nodeAlignment: right
21
+ prefix: '('
22
+ suffix: ' genes)'
23
+---
24
+sankey-beta
25
+This study, BL Tier 1,
26
+This study, BL Tier 2, 1
27
+Other BL studies, BL Tier 1, 29
28
+Other BL studies, BL Tier 2, 157
29
+```
30
+
12 31
13 32
## Novel genes reported in this study
14 33