BL_genes.md
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@@ -9,7 +9,7 @@ link-citations: true
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![](BL_sankey-1.svg)
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-## Tier 1 BL genes
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+## Tier 1, high-confidence BL genes
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### *28 total*
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@@ -44,7 +44,7 @@ link-citations: true
44 44
|[USP7](USP7)|Tier 1 GE[@grandeGenomewideDiscoverySomatic2019], aSHM|[Grande et al](papers/grandeGenomewideDiscoverySomatic2019)|[@arthurGenomewideDiscoverySomatic2018]||
45 45
|[WNK1](WNK1)|Tier 1 GE[@thomasGeneticSubgroupsInform2023], aSHM|[Thomas et al](papers/thomasGeneticSubgroupsInform2023)|[@hubschmannMutationalMechanismsShaping2021b; @jalladesExomeSequencingIdentifies2017]||
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-## Tier 2 BL genes
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+## Tier 2, low-confidence BL genes
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### *76 total*
50 50
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@@ -127,7 +127,7 @@ link-citations: true
127 127
|[ZFP36L1](ZFP36L1)|Tier 2 GE[@paneaWholeGenomeLandscape2019], aSHM|[Panea et al](papers/paneaWholeGenomeLandscape2019)|[@morinFrequentMutationHistonemodifying2011; @reichelFlowSortingExome2015a]|PASS|
128 128
|[ZNF85](ZNF85)|Tier 2 GE[@burkhardtClinicalRelevanceMolecular2022b]|[Burkhardt et al](papers/burkhardtClinicalRelevanceMolecular2022b)|||
129 129
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-## Tier 3 BL genes
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+## Tier 3, retired BL genes
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### *70 total*
133 133
DLBCL_genes.md
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@@ -9,7 +9,7 @@ link-citations: true
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![](DLBCL_sankey-1.svg)
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-## Tier 1 DLBCL genes
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+## Tier 1, high-confidence DLBCL genes
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### *126 total*
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@@ -142,7 +142,7 @@ link-citations: true
142 142
|[ZNF292](ZNF292)|Tier 1 GE[@reddyGeneticFunctionalDrivers2017], aSHM|[Reddy et al](papers/reddyGeneticFunctionalDrivers2017)|||
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|[ZNF608](ZNF608)|Tier 1 GE[@morinMutationalStructuralAnalysis2013], aSHM|[Morin et al](papers/morinMutationalStructuralAnalysis2013)|[@krysiakRecurrentSomaticMutations2017b]||
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-## Tier 2 DLBCL genes
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+## Tier 2, low-confidence DLBCL genes
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### *179 total*
148 148
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328 328
|[ZNF217](ZNF217)|Tier 2 GE[@hubschmannMutationalMechanismsShaping2021b], aSHM|[Hubschmann et al](papers/hubschmannMutationalMechanismsShaping2021b)|[@reichelFlowSortingExome2015a]|PASS|
329 329
|[ZNF423](ZNF423)|Tier 2 GE[@chapuyMolecularSubtypesDiffuse2018b], aSHM|[Chapuy et al](papers/chapuyMolecularSubtypesDiffuse2018b)||PASS|
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-## Tier 3 DLBCL genes
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+## Tier 3, retired DLBCL genes
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333 333
### *386 total*
334 334
FL_genes.md
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@@ -9,7 +9,7 @@ link-citations: true
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![](FL_sankey-1.svg)
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-## Tier 1 FL genes
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+## Tier 1, high-confidence FL genes
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### *57 total*
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73 73
|[TP53](TP53)|Tier 1 GE[@morinFrequentMutationHistonemodifying2011], FE[@rowhTp53DeletionLineage2011], aSHM|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)|[@beaLandscapeSomaticMutations2013; @lohrDiscoveryPrioritizationSomatic2012a; @rossiCodingGenomeSplenic2012c; @tiacciPervasiveMutationsJAKSTAT2018b; @wildaInactivationARFMDM2p53Pathway2004]||
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|[VMA21](VMA21)|Tier 1 GE[@hubschmannMutationalMechanismsShaping2021b]|[Hubschmann et al](papers/hubschmannMutationalMechanismsShaping2021b)|||
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-## Tier 2 FL genes
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+## Tier 2, low-confidence FL genes
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### *56 total*
79 79
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|[ZC3H12A](ZC3H12A)|Tier 2 GE, aSHM||[@chapuyMolecularSubtypesDiffuse2018b]||
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|[ZNF608](ZNF608)|Tier 2 GE[@krysiakRecurrentSomaticMutations2017b], aSHM|[Krysiak et al](papers/krysiakRecurrentSomaticMutations2017b)|[@morinMutationalStructuralAnalysis2013]||
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-## Tier 3 FL genes
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+## Tier 3, retired FL genes
140 140
141 141
### *0 total*
142 142