MZL_genes.md
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[[include:pages/MZL_Tier2]]
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-|Gene|Summary| First MZL study | Other entities | QC result |
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-|:-:|:--:|:-:|:-|:-|
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-|[ABCA13](ABCA13)|Tier 2 GE[@spinaGeneticsNodalMarginal2016]|[Spina et al](papers/spinaGeneticsNodalMarginal2016)|[@sarkozyMutationalLandscapeGray2021]||
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-|[ACTG1](ACTG1)|Tier 2 GE[@spinaGeneticsNodalMarginal2016], aSHM|[Spina et al](papers/spinaGeneticsNodalMarginal2016)|[@deschGenotypingCirculatingTumor2020; @fanComprehensiveCharacterizationDriver2020; @hubschmannMutationalMechanismsShaping2021]||
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-|[ADD2](ADD2)|Tier 2 GE[@spinaGeneticsNodalMarginal2016]|[Spina et al](papers/spinaGeneticsNodalMarginal2016)|||
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-|[AMN](AMN)|Tier 2 GE[@spinaGeneticsNodalMarginal2016]|[Spina et al](papers/spinaGeneticsNodalMarginal2016)|||
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-|[AMOTL1](AMOTL1)|Tier 2 GE[@parryWholeExomeSequencing2013]|[Parry et al](papers/parryWholeExomeSequencing2013)|||
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-|[AOC2](AOC2)|Tier 2 GE[@spinaGeneticsNodalMarginal2016]|[Spina et al](papers/spinaGeneticsNodalMarginal2016)|||
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-|[ARHGAP20](ARHGAP20)|Tier 2 GE[@jalladesExomeSequencingIdentifies2017]|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)|||
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-|[ARHGEF15](ARHGEF15)|Tier 2 GE[@jalladesExomeSequencingIdentifies2017]|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)|||
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-|[ARHGEF17](ARHGEF17)|Tier 2 GE[@jalladesExomeSequencingIdentifies2017]|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)|||
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-|[BCOR](BCOR)|Tier 2 GE[@jalladesExomeSequencingIdentifies2017]|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)|[@nadeuGenomicEpigenomicInsights2020]||
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-|[C6orf103](C6orf103)|Tier 2 GE[@spinaGeneticsNodalMarginal2016]|[Spina et al](papers/spinaGeneticsNodalMarginal2016)|||
35
-|[CBFA2T3](CBFA2T3)|Tier 2 GE[@parryWholeExomeSequencing2013]|[Parry et al](papers/parryWholeExomeSequencing2013)|||
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-|[CD79A](CD79A)|Tier 2 GE[@rossiCodingGenomeSplenic2012]|[Rossi et al](papers/rossiCodingGenomeSplenic2012)|[@burkhardtClinicalRelevanceMolecular2022]||
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-|[CD9B](CD9B)|Tier 2 GE[@vandenbrandRecurrentMutationsGenes2017]|[Vandenbrand et al](papers/vandenbrandRecurrentMutationsGenes2017)|||
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-|[CDC42BPB](CDC42BPB)|Tier 2 GE[@spinaGeneticsNodalMarginal2016]|[Spina et al](papers/spinaGeneticsNodalMarginal2016)|[@hubschmannMutationalMechanismsShaping2021]||
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-|[CDKN2A](CDKN2A)|Tier 2 GE[@spinaGeneticsNodalMarginal2016], FE[@kannengiesserFunctionalStructuralGenetic2009]|[Spina et al](papers/spinaGeneticsNodalMarginal2016)|[@grandeGenomewideDiscoverySomatic2019; @morinMutationalStructuralAnalysis2013]||
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-|[CLGN](CLGN)|Tier 2 GE[@spinaGeneticsNodalMarginal2016]|[Spina et al](papers/spinaGeneticsNodalMarginal2016)|||
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-|[CNBP](CNBP)|Tier 2 GE[@spinaGeneticsNodalMarginal2016]|[Spina et al](papers/spinaGeneticsNodalMarginal2016)|||
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-|[CNKSR2](CNKSR2)|Tier 2 GE[@spinaGeneticsNodalMarginal2016]|[Spina et al](papers/spinaGeneticsNodalMarginal2016)|||
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-|[CREBBP](CREBBP)|Tier 2 GE[@parryWholeExomeSequencing2013], FE[@pasqualucciInactivatingMutationsAcetyltransferase2011]|[Parry et al](papers/parryWholeExomeSequencing2013)|[@dunsCharacterizationDLBCLPMBL2021; @loveGeneticLandscapeMutations2012; @pasqualucciInactivatingMutationsAcetyltransferase2011]||
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-|[DNAH5](DNAH5)|Tier 2 GE[@jalladesExomeSequencingIdentifies2017]|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)|[@morinMutationalStructuralAnalysis2013]||
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-|[DNAH7](DNAH7)|Tier 2 GE[@jalladesExomeSequencingIdentifies2017]|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)|||
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-|[DNAI1](DNAI1)|Tier 2 GE[@jalladesExomeSequencingIdentifies2017]|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)|||
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-|[DOCK6](DOCK6)|Tier 2 GE[@jalladesExomeSequencingIdentifies2017]|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)|||
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-|[DSP](DSP)|Tier 2 GE||[@zhangGeneticHeterogeneityDiffuse2013]||
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-|[DTNB](DTNB)|Tier 2 GE||||
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-|[DTX3L](DTX3L)|Tier 2 GE[@jalladesExomeSequencingIdentifies2017]|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)|||
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-|[EGR1](EGR1)|Tier 2 GE[@rossiCodingGenomeSplenic2012]|[Rossi et al](papers/rossiCodingGenomeSplenic2012)|[@krysiakRecurrentSomaticMutations2017; @reichelFlowSortingExome2015]||
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-|[EGR2](EGR2)|Tier 2 GE[@rossiCodingGenomeSplenic2012]|[Rossi et al](papers/rossiCodingGenomeSplenic2012)|||
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-|[EZH1](EZH1)|Tier 2 GE[@jalladesExomeSequencingIdentifies2017]|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)|||
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-|[FAT4](FAT4)|Tier 2 GE[@parryWholeExomeSequencing2013]|[Parry et al](papers/parryWholeExomeSequencing2013)|[@morinMutationalStructuralAnalysis2013; @zhangGenomicLandscapeMantle2014]||
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-|[FBXO11](FBXO11)|Tier 2 GE[@parryWholeExomeSequencing2013], FE[@duanFBXO11TargetsBCL62011]|[Parry et al](papers/parryWholeExomeSequencing2013)|[@arthurGenomewideDiscoverySomatic2018; @richterRecurrentMutationID32012]||
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-|[GPR98](GPR98)|Tier 2 GE[@spinaGeneticsNodalMarginal2016]|[Spina et al](papers/spinaGeneticsNodalMarginal2016)|||
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-|[GPS2](GPS2)|Tier 2 GE[@rossiCodingGenomeSplenic2012]|[Rossi et al](papers/rossiCodingGenomeSplenic2012)|||
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-|[HIST1H1D](HIST1H1D)|Tier 2 GE[@jalladesExomeSequencingIdentifies2017], aSHM|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)|[@krysiakRecurrentSomaticMutations2017; @morinMutationalStructuralAnalysis2013]||
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-|[HIST1H2AD](HIST1H2AD)|Tier 2 GE[@jalladesExomeSequencingIdentifies2017]|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)|||
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-|[HIST1H2AG](HIST1H2AG)|Tier 2 GE[@rossiCodingGenomeSplenic2012]|[Rossi et al](papers/rossiCodingGenomeSplenic2012)|[@krysiakRecurrentSomaticMutations2017; @morinMutationalStructuralAnalysis2013; @paneaWholeGenomeLandscape2019]||
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-|[HIST1H2BK](HIST1H2BK)|Tier 2 GE[@rossiCodingGenomeSplenic2012], aSHM|[Rossi et al](papers/rossiCodingGenomeSplenic2012)|[@paneaWholeGenomeLandscape2019; @zhangGeneticHeterogeneityDiffuse2013]||
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-|[HIST4H4](HIST4H4)|Tier 2 GE[@jalladesExomeSequencingIdentifies2017]|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)|||
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-|[HRAS](HRAS)|Tier 2 GE[@jalladesExomeSequencingIdentifies2017]|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)|[@reddyGeneticFunctionalDrivers2017]||
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-|[IKBKB](IKBKB)|Tier 2 GE[@rossiAlterationBIRC3Multiple2011]|[Rossi et al](papers/rossiAlterationBIRC3Multiple2011)|[@reddyGeneticFunctionalDrivers2017; @wienandGenomicAnalysesFlowsorted2019]||
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-|[KAT6A](KAT6A)|Tier 2 GE[@jalladesExomeSequencingIdentifies2017]|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)|||
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-|[KDM6A](KDM6A)|Tier 2 GE[@jalladesExomeSequencingIdentifies2017]|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)|||
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-|[KIF26A](KIF26A)|Tier 2 GE[@jalladesExomeSequencingIdentifies2017]|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)|||
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-|[LRP1B](LRP1B)|Tier 2 GE[@spinaGeneticsNodalMarginal2016]|[Spina et al](papers/spinaGeneticsNodalMarginal2016)|[@zhangGeneticHeterogeneityDiffuse2013]||
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-|[MCRS1](MCRS1)|Tier 2 GE[@rossiCodingGenomeSplenic2012]|[Rossi et al](papers/rossiCodingGenomeSplenic2012)|||
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-|[MGA](MGA)|Tier 2 GE[@jalladesExomeSequencingIdentifies2017], FE[@depaoliMGASuppressorMYC2013]|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)|[@reddyGeneticFunctionalDrivers2017]||
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-|[MSL2](MSL2)|Tier 2 GE[@rossiCodingGenomeSplenic2012]|[Rossi et al](papers/rossiCodingGenomeSplenic2012)|||
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-|[MYC](MYC)|Tier 2 GE[@jalladesExomeSequencingIdentifies2017], FE[@freieGermlinePointMutation2024], aSHM|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)|[@dunsCharacterizationDLBCLPMBL2021; @johnstonCmycHypermutationBurkitt1992; @pasqualucciHypermutationMultipleProtooncogenes2001]||
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-|[MYLK](MYLK)|Tier 2 GE[@jalladesExomeSequencingIdentifies2017]|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)|||
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-|[NCOA6](NCOA6)|Tier 2 GE[@jalladesExomeSequencingIdentifies2017]|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)|||
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-|[NRAS](NRAS)|Tier 2 GE[@jalladesExomeSequencingIdentifies2017]|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)|||
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-|[PACRG](PACRG)|Tier 2 GE[@spinaGeneticsNodalMarginal2016]|[Spina et al](papers/spinaGeneticsNodalMarginal2016)|||
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-|[PARK2](PARK2)|Tier 2 GE[@spinaGeneticsNodalMarginal2016]|[Spina et al](papers/spinaGeneticsNodalMarginal2016)|||
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-|[PLA2G4D](PLA2G4D)|Tier 2 GE[@parryWholeExomeSequencing2013]|[Parry et al](papers/parryWholeExomeSequencing2013)|||
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-|[PLXNB3](PLXNB3)|Tier 2 GE[@spinaGeneticsNodalMarginal2016]|[Spina et al](papers/spinaGeneticsNodalMarginal2016)|[@zhangGenomicLandscapeMantle2014]||
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-|[RAF1](RAF1)|Tier 2 GE[@jalladesExomeSequencingIdentifies2017]|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)|[@fanComprehensiveCharacterizationDriver2020]||
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-|[RAPGEF2](RAPGEF2)|Tier 2 GE||[@zhangGeneticHeterogeneityDiffuse2013]||
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-|[RCOR1](RCOR1)|Tier 2 GE[@spinaGeneticsNodalMarginal2016]|[Spina et al](papers/spinaGeneticsNodalMarginal2016)|||
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-|[RFTN1](RFTN1)|Tier 2 GE, aSHM||[@arthurGenomewideDiscoverySomatic2018; @dunsCharacterizationDLBCLPMBL2021]||
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-|[ROCK1](ROCK1)|Tier 2 GE[@jalladesExomeSequencingIdentifies2017]|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)|||
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-|[RPL1L](RPL1L)|Tier 2 GE[@spinaGeneticsNodalMarginal2016]|[Spina et al](papers/spinaGeneticsNodalMarginal2016)|||
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-|[SAMD5](SAMD5)|Tier 2 GE[@spinaGeneticsNodalMarginal2016]|[Spina et al](papers/spinaGeneticsNodalMarginal2016)|||
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-|[SCG3](SCG3)|Tier 2 GE[@spinaGeneticsNodalMarginal2016]|[Spina et al](papers/spinaGeneticsNodalMarginal2016)|||
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-|[STXBP5](STXBP5)|Tier 2 GE[@spinaGeneticsNodalMarginal2016]|[Spina et al](papers/spinaGeneticsNodalMarginal2016)|||
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-|[SWAP70](SWAP70)|Tier 2 GE[@rossiCodingGenomeSplenic2012]|[Rossi et al](papers/rossiCodingGenomeSplenic2012)|||
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-|[TAF1](TAF1)|Tier 2 GE[@spinaGeneticsNodalMarginal2016]|[Spina et al](papers/spinaGeneticsNodalMarginal2016)|[@morinMutationalStructuralAnalysis2013]||
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-|[TBK1](TBK1)|Tier 2 GE[@jalladesExomeSequencingIdentifies2017]|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)|||
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-|[TCTN2](TCTN2)|Tier 2 GE[@spinaGeneticsNodalMarginal2016]|[Spina et al](papers/spinaGeneticsNodalMarginal2016)|||
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-|[TNIP2](TNIP2)|Tier 2 GE[@vandenbrandRecurrentMutationsGenes2017]|[Vandenbrand et al](papers/vandenbrandRecurrentMutationsGenes2017)|||
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-|[TRRAP](TRRAP)|Tier 2 GE[@rossiCodingGenomeSplenic2012]|[Rossi et al](papers/rossiCodingGenomeSplenic2012)|[@zhangGeneticHeterogeneityDiffuse2013]||
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-|[USH2A](USH2A)|Tier 2 GE[@parryWholeExomeSequencing2013]|[Parry et al](papers/parryWholeExomeSequencing2013)|||
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-|[WAC](WAC)|Tier 2 GE[@rossiCodingGenomeSplenic2012]|[Rossi et al](papers/rossiCodingGenomeSplenic2012)|[@reddyGeneticFunctionalDrivers2017]||
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-|[WNK1](WNK1)|Tier 2 GE[@jalladesExomeSequencingIdentifies2017]|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)|[@hubschmannMutationalMechanismsShaping2021; @thomasGeneticSubgroupsInform2023]||
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-## Tier 3, retired MZL genes
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-### *0 total*
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-|Gene|Summary| First MZL study | Other entities | QC result |
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# References