771a48cf1d4c59216b7e7fb152812183a46e12b0
MZL_genes.md
| ... | ... | @@ -19,89 +19,5 @@ link-citations: true |
| 19 | 19 | |
| 20 | 20 | [[include:pages/MZL_Tier2]] |
| 21 | 21 | |
| 22 | -|Gene|Summary| First MZL study | Other entities | QC result | |
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| 23 | -|:-:|:--:|:-:|:-|:-| |
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| 24 | -|[ABCA13](ABCA13)|Tier 2 GE[@spinaGeneticsNodalMarginal2016]|[Spina et al](papers/spinaGeneticsNodalMarginal2016)|[@sarkozyMutationalLandscapeGray2021]|| |
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| 25 | -|[ACTG1](ACTG1)|Tier 2 GE[@spinaGeneticsNodalMarginal2016], aSHM|[Spina et al](papers/spinaGeneticsNodalMarginal2016)|[@deschGenotypingCirculatingTumor2020; @fanComprehensiveCharacterizationDriver2020; @hubschmannMutationalMechanismsShaping2021]|| |
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| 26 | -|[ADD2](ADD2)|Tier 2 GE[@spinaGeneticsNodalMarginal2016]|[Spina et al](papers/spinaGeneticsNodalMarginal2016)||| |
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| 27 | -|[AMN](AMN)|Tier 2 GE[@spinaGeneticsNodalMarginal2016]|[Spina et al](papers/spinaGeneticsNodalMarginal2016)||| |
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| 28 | -|[AMOTL1](AMOTL1)|Tier 2 GE[@parryWholeExomeSequencing2013]|[Parry et al](papers/parryWholeExomeSequencing2013)||| |
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| 29 | -|[AOC2](AOC2)|Tier 2 GE[@spinaGeneticsNodalMarginal2016]|[Spina et al](papers/spinaGeneticsNodalMarginal2016)||| |
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| 30 | -|[ARHGAP20](ARHGAP20)|Tier 2 GE[@jalladesExomeSequencingIdentifies2017]|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)||| |
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| 31 | -|[ARHGEF15](ARHGEF15)|Tier 2 GE[@jalladesExomeSequencingIdentifies2017]|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)||| |
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| 32 | -|[ARHGEF17](ARHGEF17)|Tier 2 GE[@jalladesExomeSequencingIdentifies2017]|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)||| |
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| 33 | -|[BCOR](BCOR)|Tier 2 GE[@jalladesExomeSequencingIdentifies2017]|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)|[@nadeuGenomicEpigenomicInsights2020]|| |
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| 34 | -|[C6orf103](C6orf103)|Tier 2 GE[@spinaGeneticsNodalMarginal2016]|[Spina et al](papers/spinaGeneticsNodalMarginal2016)||| |
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| 35 | -|[CBFA2T3](CBFA2T3)|Tier 2 GE[@parryWholeExomeSequencing2013]|[Parry et al](papers/parryWholeExomeSequencing2013)||| |
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| 36 | -|[CD79A](CD79A)|Tier 2 GE[@rossiCodingGenomeSplenic2012]|[Rossi et al](papers/rossiCodingGenomeSplenic2012)|[@burkhardtClinicalRelevanceMolecular2022]|| |
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| 37 | -|[CD9B](CD9B)|Tier 2 GE[@vandenbrandRecurrentMutationsGenes2017]|[Vandenbrand et al](papers/vandenbrandRecurrentMutationsGenes2017)||| |
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| 38 | -|[CDC42BPB](CDC42BPB)|Tier 2 GE[@spinaGeneticsNodalMarginal2016]|[Spina et al](papers/spinaGeneticsNodalMarginal2016)|[@hubschmannMutationalMechanismsShaping2021]|| |
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| 39 | -|[CDKN2A](CDKN2A)|Tier 2 GE[@spinaGeneticsNodalMarginal2016], FE[@kannengiesserFunctionalStructuralGenetic2009]|[Spina et al](papers/spinaGeneticsNodalMarginal2016)|[@grandeGenomewideDiscoverySomatic2019; @morinMutationalStructuralAnalysis2013]|| |
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| 40 | -|[CLGN](CLGN)|Tier 2 GE[@spinaGeneticsNodalMarginal2016]|[Spina et al](papers/spinaGeneticsNodalMarginal2016)||| |
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| 41 | -|[CNBP](CNBP)|Tier 2 GE[@spinaGeneticsNodalMarginal2016]|[Spina et al](papers/spinaGeneticsNodalMarginal2016)||| |
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| 42 | -|[CNKSR2](CNKSR2)|Tier 2 GE[@spinaGeneticsNodalMarginal2016]|[Spina et al](papers/spinaGeneticsNodalMarginal2016)||| |
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| 43 | -|[CREBBP](CREBBP)|Tier 2 GE[@parryWholeExomeSequencing2013], FE[@pasqualucciInactivatingMutationsAcetyltransferase2011]|[Parry et al](papers/parryWholeExomeSequencing2013)|[@dunsCharacterizationDLBCLPMBL2021; @loveGeneticLandscapeMutations2012; @pasqualucciInactivatingMutationsAcetyltransferase2011]|| |
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| 44 | -|[DNAH5](DNAH5)|Tier 2 GE[@jalladesExomeSequencingIdentifies2017]|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)|[@morinMutationalStructuralAnalysis2013]|| |
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| 45 | -|[DNAH7](DNAH7)|Tier 2 GE[@jalladesExomeSequencingIdentifies2017]|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)||| |
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| 46 | -|[DNAI1](DNAI1)|Tier 2 GE[@jalladesExomeSequencingIdentifies2017]|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)||| |
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| 47 | -|[DOCK6](DOCK6)|Tier 2 GE[@jalladesExomeSequencingIdentifies2017]|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)||| |
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| 48 | -|[DSP](DSP)|Tier 2 GE||[@zhangGeneticHeterogeneityDiffuse2013]|| |
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| 49 | -|[DTNB](DTNB)|Tier 2 GE|||| |
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| 50 | -|[DTX3L](DTX3L)|Tier 2 GE[@jalladesExomeSequencingIdentifies2017]|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)||| |
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| 51 | -|[EGR1](EGR1)|Tier 2 GE[@rossiCodingGenomeSplenic2012]|[Rossi et al](papers/rossiCodingGenomeSplenic2012)|[@krysiakRecurrentSomaticMutations2017; @reichelFlowSortingExome2015]|| |
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| 52 | -|[EGR2](EGR2)|Tier 2 GE[@rossiCodingGenomeSplenic2012]|[Rossi et al](papers/rossiCodingGenomeSplenic2012)||| |
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| 53 | -|[EZH1](EZH1)|Tier 2 GE[@jalladesExomeSequencingIdentifies2017]|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)||| |
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| 54 | -|[FAT4](FAT4)|Tier 2 GE[@parryWholeExomeSequencing2013]|[Parry et al](papers/parryWholeExomeSequencing2013)|[@morinMutationalStructuralAnalysis2013; @zhangGenomicLandscapeMantle2014]|| |
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| 55 | -|[FBXO11](FBXO11)|Tier 2 GE[@parryWholeExomeSequencing2013], FE[@duanFBXO11TargetsBCL62011]|[Parry et al](papers/parryWholeExomeSequencing2013)|[@arthurGenomewideDiscoverySomatic2018; @richterRecurrentMutationID32012]|| |
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| 56 | -|[GPR98](GPR98)|Tier 2 GE[@spinaGeneticsNodalMarginal2016]|[Spina et al](papers/spinaGeneticsNodalMarginal2016)||| |
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| 57 | -|[GPS2](GPS2)|Tier 2 GE[@rossiCodingGenomeSplenic2012]|[Rossi et al](papers/rossiCodingGenomeSplenic2012)||| |
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| 58 | -|[HIST1H1D](HIST1H1D)|Tier 2 GE[@jalladesExomeSequencingIdentifies2017], aSHM|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)|[@krysiakRecurrentSomaticMutations2017; @morinMutationalStructuralAnalysis2013]|| |
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| 59 | -|[HIST1H2AD](HIST1H2AD)|Tier 2 GE[@jalladesExomeSequencingIdentifies2017]|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)||| |
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| 60 | -|[HIST1H2AG](HIST1H2AG)|Tier 2 GE[@rossiCodingGenomeSplenic2012]|[Rossi et al](papers/rossiCodingGenomeSplenic2012)|[@krysiakRecurrentSomaticMutations2017; @morinMutationalStructuralAnalysis2013; @paneaWholeGenomeLandscape2019]|| |
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| 61 | -|[HIST1H2BK](HIST1H2BK)|Tier 2 GE[@rossiCodingGenomeSplenic2012], aSHM|[Rossi et al](papers/rossiCodingGenomeSplenic2012)|[@paneaWholeGenomeLandscape2019; @zhangGeneticHeterogeneityDiffuse2013]|| |
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| 62 | -|[HIST4H4](HIST4H4)|Tier 2 GE[@jalladesExomeSequencingIdentifies2017]|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)||| |
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| 63 | -|[HRAS](HRAS)|Tier 2 GE[@jalladesExomeSequencingIdentifies2017]|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)|[@reddyGeneticFunctionalDrivers2017]|| |
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| 64 | -|[IKBKB](IKBKB)|Tier 2 GE[@rossiAlterationBIRC3Multiple2011]|[Rossi et al](papers/rossiAlterationBIRC3Multiple2011)|[@reddyGeneticFunctionalDrivers2017; @wienandGenomicAnalysesFlowsorted2019]|| |
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| 65 | -|[KAT6A](KAT6A)|Tier 2 GE[@jalladesExomeSequencingIdentifies2017]|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)||| |
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| 66 | -|[KDM6A](KDM6A)|Tier 2 GE[@jalladesExomeSequencingIdentifies2017]|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)||| |
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| 67 | -|[KIF26A](KIF26A)|Tier 2 GE[@jalladesExomeSequencingIdentifies2017]|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)||| |
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| 68 | -|[LRP1B](LRP1B)|Tier 2 GE[@spinaGeneticsNodalMarginal2016]|[Spina et al](papers/spinaGeneticsNodalMarginal2016)|[@zhangGeneticHeterogeneityDiffuse2013]|| |
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| 69 | -|[MCRS1](MCRS1)|Tier 2 GE[@rossiCodingGenomeSplenic2012]|[Rossi et al](papers/rossiCodingGenomeSplenic2012)||| |
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| 70 | -|[MGA](MGA)|Tier 2 GE[@jalladesExomeSequencingIdentifies2017], FE[@depaoliMGASuppressorMYC2013]|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)|[@reddyGeneticFunctionalDrivers2017]|| |
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| 71 | -|[MSL2](MSL2)|Tier 2 GE[@rossiCodingGenomeSplenic2012]|[Rossi et al](papers/rossiCodingGenomeSplenic2012)||| |
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| 72 | -|[MYC](MYC)|Tier 2 GE[@jalladesExomeSequencingIdentifies2017], FE[@freieGermlinePointMutation2024], aSHM|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)|[@dunsCharacterizationDLBCLPMBL2021; @johnstonCmycHypermutationBurkitt1992; @pasqualucciHypermutationMultipleProtooncogenes2001]|| |
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| 73 | -|[MYLK](MYLK)|Tier 2 GE[@jalladesExomeSequencingIdentifies2017]|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)||| |
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| 74 | -|[NCOA6](NCOA6)|Tier 2 GE[@jalladesExomeSequencingIdentifies2017]|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)||| |
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| 75 | -|[NRAS](NRAS)|Tier 2 GE[@jalladesExomeSequencingIdentifies2017]|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)||| |
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| 76 | -|[PACRG](PACRG)|Tier 2 GE[@spinaGeneticsNodalMarginal2016]|[Spina et al](papers/spinaGeneticsNodalMarginal2016)||| |
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| 77 | -|[PARK2](PARK2)|Tier 2 GE[@spinaGeneticsNodalMarginal2016]|[Spina et al](papers/spinaGeneticsNodalMarginal2016)||| |
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| 78 | -|[PLA2G4D](PLA2G4D)|Tier 2 GE[@parryWholeExomeSequencing2013]|[Parry et al](papers/parryWholeExomeSequencing2013)||| |
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| 79 | -|[PLXNB3](PLXNB3)|Tier 2 GE[@spinaGeneticsNodalMarginal2016]|[Spina et al](papers/spinaGeneticsNodalMarginal2016)|[@zhangGenomicLandscapeMantle2014]|| |
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| 80 | -|[RAF1](RAF1)|Tier 2 GE[@jalladesExomeSequencingIdentifies2017]|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)|[@fanComprehensiveCharacterizationDriver2020]|| |
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| 81 | -|[RAPGEF2](RAPGEF2)|Tier 2 GE||[@zhangGeneticHeterogeneityDiffuse2013]|| |
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| 82 | -|[RCOR1](RCOR1)|Tier 2 GE[@spinaGeneticsNodalMarginal2016]|[Spina et al](papers/spinaGeneticsNodalMarginal2016)||| |
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| 83 | -|[RFTN1](RFTN1)|Tier 2 GE, aSHM||[@arthurGenomewideDiscoverySomatic2018; @dunsCharacterizationDLBCLPMBL2021]|| |
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| 84 | -|[ROCK1](ROCK1)|Tier 2 GE[@jalladesExomeSequencingIdentifies2017]|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)||| |
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| 85 | -|[RPL1L](RPL1L)|Tier 2 GE[@spinaGeneticsNodalMarginal2016]|[Spina et al](papers/spinaGeneticsNodalMarginal2016)||| |
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| 86 | -|[SAMD5](SAMD5)|Tier 2 GE[@spinaGeneticsNodalMarginal2016]|[Spina et al](papers/spinaGeneticsNodalMarginal2016)||| |
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| 87 | -|[SCG3](SCG3)|Tier 2 GE[@spinaGeneticsNodalMarginal2016]|[Spina et al](papers/spinaGeneticsNodalMarginal2016)||| |
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| 88 | -|[STXBP5](STXBP5)|Tier 2 GE[@spinaGeneticsNodalMarginal2016]|[Spina et al](papers/spinaGeneticsNodalMarginal2016)||| |
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| 89 | -|[SWAP70](SWAP70)|Tier 2 GE[@rossiCodingGenomeSplenic2012]|[Rossi et al](papers/rossiCodingGenomeSplenic2012)||| |
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| 90 | -|[TAF1](TAF1)|Tier 2 GE[@spinaGeneticsNodalMarginal2016]|[Spina et al](papers/spinaGeneticsNodalMarginal2016)|[@morinMutationalStructuralAnalysis2013]|| |
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| 91 | -|[TBK1](TBK1)|Tier 2 GE[@jalladesExomeSequencingIdentifies2017]|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)||| |
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| 92 | -|[TCTN2](TCTN2)|Tier 2 GE[@spinaGeneticsNodalMarginal2016]|[Spina et al](papers/spinaGeneticsNodalMarginal2016)||| |
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| 93 | -|[TNIP2](TNIP2)|Tier 2 GE[@vandenbrandRecurrentMutationsGenes2017]|[Vandenbrand et al](papers/vandenbrandRecurrentMutationsGenes2017)||| |
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| 94 | -|[TRRAP](TRRAP)|Tier 2 GE[@rossiCodingGenomeSplenic2012]|[Rossi et al](papers/rossiCodingGenomeSplenic2012)|[@zhangGeneticHeterogeneityDiffuse2013]|| |
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| 95 | -|[USH2A](USH2A)|Tier 2 GE[@parryWholeExomeSequencing2013]|[Parry et al](papers/parryWholeExomeSequencing2013)||| |
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| 96 | -|[WAC](WAC)|Tier 2 GE[@rossiCodingGenomeSplenic2012]|[Rossi et al](papers/rossiCodingGenomeSplenic2012)|[@reddyGeneticFunctionalDrivers2017]|| |
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| 97 | -|[WNK1](WNK1)|Tier 2 GE[@jalladesExomeSequencingIdentifies2017]|[Jallades et al](papers/jalladesExomeSequencingIdentifies2017)|[@hubschmannMutationalMechanismsShaping2021; @thomasGeneticSubgroupsInform2023]|| |
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| 98 | - |
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| 99 | -## Tier 3, retired MZL genes |
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| 100 | - |
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| 101 | -### *0 total* |
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| 102 | - |
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| 103 | -|Gene|Summary| First MZL study | Other entities | QC result | |
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| 104 | -|:-:|:--:|:-:|:-|:-| |
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| 105 | - |
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| 106 | 22 | |
| 107 | 23 | # References |