FL_genes.md
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@@ -3,145 +3,25 @@ title: 'FL genes'
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bibliography: 'morinlab.bib'
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csl: 'NLM.csl'
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link-citations: true
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+nocite: |
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+ @barariaCathepsinAlterationsInduce2020, @cheungAcquiredTNFRSF14Mutations2010, @drevalGeneticSubdivisionsFollicular2023, @greenMutationsEarlyFollicular2015, @hubschmannMutationalMechanismsShaping2021, @krysiakRecurrentSomaticMutations2017, @laurentFollicularLymphomaComprises2024, @louissaintPediatrictypeNodalFollicular2016, @maSubtypespecificCooccurringGenetic2022, @morinFrequentMutationHistonemodifying2011, @morinSomaticMutationsAltering2010, @okosunRecurrentMTORC1activatingRRAGC2016, @pasqualucciInactivatingMutationsAcetyltransferase2011, @rossiAberrantSomaticHypermutation2006, @russler-germainMutationsAssociatedProgression2023, @yildizActivatingSTAT6Mutations2015
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---
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## Origins of FL genes
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![](FL_sankey-1.svg)
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-## Tier 1 FL genes
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-### *54 total*
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+## Tier 1 FL genes
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-|Gene|Summary| First FL study | Other entities | QC result |
17
-|:-:|:--:|:-:|:-|:-|
18
-|[ACTB](ACTB)|Tier 1 GE[@drevalGeneticSubdivisionsFollicular2023], aSHM|[Dreval et al](papers/drevalGeneticSubdivisionsFollicular2023)|[@lohrDiscoveryPrioritizationSomatic2012; @wienandGenomicAnalysesFlowsorted2019]||
19
-|[ARID1A](ARID1A)|Tier 1 GE[@krysiakRecurrentSomaticMutations2017], FE[@barisicARID1AOrchestratesSWI2024]|[Krysiak et al](papers/krysiakRecurrentSomaticMutations2017)|[@loveGeneticLandscapeMutations2012; @rossiCodingGenomeSplenic2012; @wienandGenomicAnalysesFlowsorted2019; @zhangGeneticHeterogeneityDiffuse2013]||
20
-|[ATP6AP1](ATP6AP1)|Tier 1 GE[@okosunRecurrentMTORC1activatingRRAGC2016]|[Okosun et al](papers/okosunRecurrentMTORC1activatingRRAGC2016)|||
21
-|[ATP6V1B2](ATP6V1B2)|Tier 1 GE[@okosunRecurrentMTORC1activatingRRAGC2016]|[Okosun et al](papers/okosunRecurrentMTORC1activatingRRAGC2016)|||
22
-|[B2M](B2M)|Tier 1 GE[@morinFrequentMutationHistonemodifying2011], FE[@challa-malladiCombinedGeneticInactivation2011]|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)|[@pararajalingamCodingNoncodingDrivers2020; @reichelFlowSortingExome2015]||
23
-|[BCL10](BCL10)|Tier 1 GE[@russler-germainMutationsAssociatedProgression2023], FE[@xiaBCL10MutationsDefine2022]|[Russler-germain et al](papers/russler-germainMutationsAssociatedProgression2023)|[@morinFrequentMutationHistonemodifying2011; @spinaGeneticsNodalMarginal2016]||
24
-|[BCL2](BCL2)|Tier 1 GE[@morinFrequentMutationHistonemodifying2011], aSHM|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)|[@burkhardtClinicalRelevanceMolecular2022; @sarkozyMutationalLandscapeGray2021; @tanakaFrequentIncidenceSomatic1992]||
25
-|[BCL6](BCL6)|Tier 1 GE[@drevalGeneticSubdivisionsFollicular2023], FE[@masclePointMutationsBCL62003], aSHM|[Dreval et al](papers/drevalGeneticSubdivisionsFollicular2023)|[@loveGeneticLandscapeMutations2012; @morinFrequentMutationHistonemodifying2011]||
26
-|[BCL7A](BCL7A)|Tier 1 GE[@krysiakRecurrentSomaticMutations2017], FE[@balinas-gaviraFrequentMutationsAminoterminal2020], aSHM|[Krysiak et al](papers/krysiakRecurrentSomaticMutations2017)|[@grandeGenomewideDiscoverySomatic2019; @morinFrequentMutationHistonemodifying2011; @reichelFlowSortingExome2015]||
27
-|[BTK](BTK)|Tier 1 GE[@krysiakRecurrentSomaticMutations2017], FE[@huFollicularLymphomaassociatedBTK2021]|[Krysiak et al](papers/krysiakRecurrentSomaticMutations2017)|[@albuquerqueEnhancingKnowledgeDiscovery2017]||
28
-|[CARD11](CARD11)|Tier 1 GE[@morinFrequentMutationHistonemodifying2011], FE[@lenzOncogenicCARD11Mutations2008]|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)|[@lenzOncogenicCARD11Mutations2008; @wuGeneticHeterogeneityPrimary2016; @yanBCRTLRSignaling2012]||
29
-|[CCND3](CCND3)|Tier 1 GE[@morinFrequentMutationHistonemodifying2011], FE[@schmitzBurkittLymphomaPathogenesis2012]|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)|[@deschGenotypingCirculatingTumor2020; @jalladesExomeSequencingIdentifies2017; @richterRecurrentMutationID32012]||
30
-|[CD83](CD83)|Tier 1 GE[@russler-germainMutationsAssociatedProgression2023], aSHM|[Russler-germain et al](papers/russler-germainMutationsAssociatedProgression2023)|[@dunsCharacterizationDLBCLPMBL2021; @morinMutationalStructuralAnalysis2013; @paneaWholeGenomeLandscape2019]||
31
-|[CREBBP](CREBBP)|Tier 1 GE[@pasqualucciInactivatingMutationsAcetyltransferase2011], FE[@pasqualucciInactivatingMutationsAcetyltransferase2011]|[Pasqualucci et al](papers/pasqualucciInactivatingMutationsAcetyltransferase2011)|[@dunsCharacterizationDLBCLPMBL2021; @loveGeneticLandscapeMutations2012; @parryWholeExomeSequencing2013]||
32
-|[CTSS](CTSS)|Tier 1 GE[@barariaCathepsinAlterationsInduce2020]|[Bararia et al](papers/barariaCathepsinAlterationsInduce2020)|||
33
-|[EBF1](EBF1)|Tier 1 GE[@drevalGeneticSubdivisionsFollicular2023], FE[@ramirez-komoSpontaneousLossLineage2017], aSHM|[Dreval et al](papers/drevalGeneticSubdivisionsFollicular2023)|[@bohleRoleEarlyBcell2013; @reichelFlowSortingExome2015; @thomasGeneticSubgroupsInform2023]||
34
-|[EEF1A1](EEF1A1)|Tier 1 GE[@hubschmannMutationalMechanismsShaping2021]|[Hubschmann et al](papers/hubschmannMutationalMechanismsShaping2021)|[@chapuyMolecularSubtypesDiffuse2018; @reichelFlowSortingExome2015]||
35
-|[EP300](EP300)|Tier 1 GE[@pasqualucciInactivatingMutationsAcetyltransferase2011], FE[@pasqualucciInactivatingMutationsAcetyltransferase2011]|[Pasqualucci et al](papers/pasqualucciInactivatingMutationsAcetyltransferase2011)|[@rossiCodingGenomeSplenic2012]||
36
-|[EZH2](EZH2)|Tier 1 GE[@morinSomaticMutationsAltering2010], FE[@sneeringerCoordinatedActivitiesWildtype2010]|[Morin et al](papers/morinSomaticMutationsAltering2010)|[@loveGeneticLandscapeMutations2012; @mottokIntegrativeGenomicAnalysis2019]||
37
-|[FAS](FAS)|Tier 1 GE[@morinFrequentMutationHistonemodifying2011], FE[@wangFasFADDDeathDomain2010]|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)|[@schollMutationsRegionFAS2007; @spinaGeneticsNodalMarginal2016]||
38
-|[FOXO1](FOXO1)|Tier 1 GE[@morinFrequentMutationHistonemodifying2011], FE[@trinhAnalysisFOXO1Mutations]|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)|[@dunsCharacterizationDLBCLPMBL2021; @schmitzBurkittLymphomaPathogenesis2012]||
39
-|[GNA13](GNA13)|Tier 1 GE[@morinFrequentMutationHistonemodifying2011], FE[@muppidiLossSignalingGa132014]|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)|[@loveGeneticLandscapeMutations2012; @reichelFlowSortingExome2015]||
40
-|[GNAI2](GNAI2)|Tier 1 GE[@drevalGeneticSubdivisionsFollicular2023], FE[@muppidiLossSignalingGa132014]|[Dreval et al](papers/drevalGeneticSubdivisionsFollicular2023)|[@grandeGenomewideDiscoverySomatic2019; @morinMutationalStructuralAnalysis2013]||
41
-|[HIST1H1B](HIST1H1B)|Tier 1 GE[@krysiakRecurrentSomaticMutations2017], aSHM|[Krysiak et al](papers/krysiakRecurrentSomaticMutations2017)|[@chapuyMolecularSubtypesDiffuse2018; @sarkozyMutationalLandscapeGray2021]||
42
-|[HIST1H1C](HIST1H1C)|Tier 1 GE[@morinFrequentMutationHistonemodifying2011], aSHM|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)|[@paneaWholeGenomeLandscape2019]||
43
-|[HIST1H1D](HIST1H1D)|Tier 1 GE[@krysiakRecurrentSomaticMutations2017], aSHM|[Krysiak et al](papers/krysiakRecurrentSomaticMutations2017)|[@jalladesExomeSequencingIdentifies2017; @morinMutationalStructuralAnalysis2013]||
44
-|[HIST1H1E](HIST1H1E)|Tier 1 GE[@krysiakRecurrentSomaticMutations2017], aSHM|[Krysiak et al](papers/krysiakRecurrentSomaticMutations2017)|[@grandeGenomewideDiscoverySomatic2019; @lohrDiscoveryPrioritizationSomatic2012; @reichelFlowSortingExome2015]||
45
-|[HIST1H2AC](HIST1H2AC)|Tier 1 GE[@krysiakRecurrentSomaticMutations2017], aSHM|[Krysiak et al](papers/krysiakRecurrentSomaticMutations2017)|[@morinMutationalStructuralAnalysis2013]||
46
-|[HIST1H2AG](HIST1H2AG)|Tier 1 GE[@krysiakRecurrentSomaticMutations2017]|[Krysiak et al](papers/krysiakRecurrentSomaticMutations2017)|[@morinMutationalStructuralAnalysis2013; @paneaWholeGenomeLandscape2019; @rossiCodingGenomeSplenic2012]||
47
-|[HIST1H2AM](HIST1H2AM)|Tier 1 GE[@krysiakRecurrentSomaticMutations2017], aSHM|[Krysiak et al](papers/krysiakRecurrentSomaticMutations2017)|[@chapuyMolecularSubtypesDiffuse2018; @paneaWholeGenomeLandscape2019]||
48
-|[HIST1H2BC](HIST1H2BC)|Tier 1 GE[@krysiakRecurrentSomaticMutations2017], aSHM|[Krysiak et al](papers/krysiakRecurrentSomaticMutations2017)|[@lohrDiscoveryPrioritizationSomatic2012; @mottokIntegrativeGenomicAnalysis2019]||
49
-|[HIST1H2BG](HIST1H2BG)|Tier 1 GE[@krysiakRecurrentSomaticMutations2017]|[Krysiak et al](papers/krysiakRecurrentSomaticMutations2017)|||
50
-|[HVCN1](HVCN1)|Tier 1 GE[@krysiakRecurrentSomaticMutations2017]|[Krysiak et al](papers/krysiakRecurrentSomaticMutations2017)|[@chapuyMolecularSubtypesDiffuse2018]||
51
-|[IRF4](IRF4)|Tier 1 GE[@drevalGeneticSubdivisionsFollicular2023], aSHM|[Dreval et al](papers/drevalGeneticSubdivisionsFollicular2023)|[@morinFrequentMutationHistonemodifying2011; @mottokIntegrativeGenomicAnalysis2019]||
52
-|[IRF8](IRF8)|Tier 1 GE[@morinFrequentMutationHistonemodifying2011], FE[@qiuIRF8mutantCellLymphoma2024], aSHM|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)|[@mottokIntegrativeGenomicAnalysis2019; @paneaWholeGenomeLandscape2019]||
53
-|[KLHL6](KLHL6)|Tier 1 GE[@morinFrequentMutationHistonemodifying2011], FE[@choiLossKLHL6Promotes2018], aSHM|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)|[@ganapathiGeneticLandscapeDural2016]||
54
-|[KMT2D](KMT2D)|Tier 1 GE[@morinFrequentMutationHistonemodifying2011], FE[@zhangDisruptionKMT2DPerturbs2015]|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)|[@beaLandscapeSomaticMutations2013; @deschGenotypingCirculatingTumor2020; @grandeGenomewideDiscoverySomatic2019; @rossiCodingGenomeSplenic2012]||
55
-|[MAP2K1](MAP2K1)|Tier 1 GE[@louissaintPediatrictypeNodalFollicular2016]|[Louissaint et al](papers/louissaintPediatrictypeNodalFollicular2016)|[@shinBRAFV600EMAP2K12015]||
56
-|[MEF2B](MEF2B)|Tier 1 GE[@morinFrequentMutationHistonemodifying2011], FE[@ponMEF2BMutationsNonHodgkin2015], aSHM|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)|[@beaLandscapeSomaticMutations2013]||
57
-|[MYC](MYC)|Tier 1 GE, FE[@freieGermlinePointMutation2024], aSHM||[@dunsCharacterizationDLBCLPMBL2021; @jalladesExomeSequencingIdentifies2017; @johnstonCmycHypermutationBurkitt1992; @pasqualucciHypermutationMultipleProtooncogenes2001]||
58
-|[PIM1](PIM1)|Tier 1 GE[@drevalGeneticSubdivisionsFollicular2023], FE[@kuoRolePIM1Ibrutinibresistant2016], aSHM|[Dreval et al](papers/drevalGeneticSubdivisionsFollicular2023)|[@burkhardtClinicalRelevanceMolecular2022; @dunsCharacterizationDLBCLPMBL2021; @pasqualucciHypermutationMultipleProtooncogenes2001]||
59
-|[POU2AF1](POU2AF1)|Tier 1 GE[@krysiakRecurrentSomaticMutations2017], FE[@gonzalez-rinconUnravelingTransformationFollicular2019], aSHM|[Krysiak et al](papers/krysiakRecurrentSomaticMutations2017)|[@chapuyMolecularSubtypesDiffuse2018]||
60
-|[POU2F2](POU2F2)|Tier 1 GE[@krysiakRecurrentSomaticMutations2017], FE[@hodsonRegulationNormalBcell2016]|[Krysiak et al](papers/krysiakRecurrentSomaticMutations2017)|[@lohrDiscoveryPrioritizationSomatic2012]||
61
-|[RRAGC](RRAGC)|Tier 1 GE[@okosunRecurrentMTORC1activatingRRAGC2016], FE[@okosunRecurrentMTORC1activatingRRAGC2016]|[Okosun et al](papers/okosunRecurrentMTORC1activatingRRAGC2016)|||
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-|[SGK1](SGK1)|Tier 1 GE[@morinFrequentMutationHistonemodifying2011], FE[@gaoSGK1MutationsDLBCL2021], aSHM|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)|[@dunsCharacterizationDLBCLPMBL2021]||
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-|[SMARCA4](SMARCA4)|Tier 1 GE[@krysiakRecurrentSomaticMutations2017], FE[@fernandoFunctionalCharacterizationSMARCA42020]|[Krysiak et al](papers/krysiakRecurrentSomaticMutations2017)|[@nadeuGenomicEpigenomicInsights2020; @reddyGeneticFunctionalDrivers2017; @richterRecurrentMutationID32012]||
64
-|[SOCS1](SOCS1)|Tier 1 GE[@drevalGeneticSubdivisionsFollicular2023], FE[@melznerBiallelicMutationSOCS12005], aSHM|[Dreval et al](papers/drevalGeneticSubdivisionsFollicular2023)|[@morinFrequentMutationHistonemodifying2011; @wenigerMutationsTumorSuppressor2006]||
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-|[STAT6](STAT6)|Tier 1 GE[@yildizActivatingSTAT6Mutations2015], FE[@mentzPARP14NovelTarget2022]|[Yildiz et al](papers/yildizActivatingSTAT6Mutations2015)|[@ritzRecurrentMutationsSTAT62009]||
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-|[TBL1XR1](TBL1XR1)|Tier 1 GE[@drevalGeneticSubdivisionsFollicular2023], FE[@venturuttiTBL1XR1MutationsDrive2020]|[Dreval et al](papers/drevalGeneticSubdivisionsFollicular2023)|[@lohrDiscoveryPrioritizationSomatic2012; @rossiCodingGenomeSplenic2012]||
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-|[TMSB4X](TMSB4X)|Tier 1 GE[@drevalGeneticSubdivisionsFollicular2023], aSHM|[Dreval et al](papers/drevalGeneticSubdivisionsFollicular2023)|[@reddyGeneticFunctionalDrivers2017]||
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-|[TNFAIP3](TNFAIP3)|Tier 1 GE[@drevalGeneticSubdivisionsFollicular2023], FE[@compagnoMutationsMultipleGenes2009]|[Dreval et al](papers/drevalGeneticSubdivisionsFollicular2023)|[@compagnoMutationsMultipleGenes2009; @rossiAlterationBIRC3Multiple2011; @schmitzTNFAIP3A20Tumor2009]||
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-|[TNFRSF14](TNFRSF14)|Tier 1 GE[@cheungAcquiredTNFRSF14Mutations2010], FE[@]|[Cheung et al](papers/cheungAcquiredTNFRSF14Mutations2010)|[@morinFrequentMutationHistonemodifying2011; @spinaGeneticsNodalMarginal2016]||
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-|[TP53](TP53)|Tier 1 GE[@morinFrequentMutationHistonemodifying2011], FE[@katoUnderstandingFunctionstructureFunctionmutation2003]|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)|[@beaLandscapeSomaticMutations2013; @rossiCodingGenomeSplenic2012; @tiacciPervasiveMutationsJAKSTAT2018; @wildaInactivationARFMDM2p53Pathway2004]||
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-|[VMA21](VMA21)|Tier 1 GE[@hubschmannMutationalMechanismsShaping2021]|[Hubschmann et al](papers/hubschmannMutationalMechanismsShaping2021)|||
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+[[include:FL_Tier1.md]]
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## Tier 2 FL genes
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-### *59 total*
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-
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-|Gene|Summary| First FL study | Other entities | QC result |
78
-|:-:|:--:|:-:|:-|:-|
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-|[ABL2](ABL2)|Tier 2 GE[@russler-germainMutationsAssociatedProgression2023]|[Russler-germain et al](papers/russler-germainMutationsAssociatedProgression2023)|||
80
-|[ACTG1](ACTG1)|Tier 2 GE[@hubschmannMutationalMechanismsShaping2021], aSHM|[Hubschmann et al](papers/hubschmannMutationalMechanismsShaping2021)|[@deschGenotypingCirculatingTumor2020; @fanComprehensiveCharacterizationDriver2020; @spinaGeneticsNodalMarginal2016]||
81
-|[ATP6V1A](ATP6V1A)|Tier 2 GE[@hubschmannMutationalMechanismsShaping2021]|[Hubschmann et al](papers/hubschmannMutationalMechanismsShaping2021)|||
82
-|[BIRC6](BIRC6)|Tier 2 GE||[@reddyGeneticFunctionalDrivers2017; @sarkozyMutationalLandscapeGray2021]||
83
-|[BTG1](BTG1)|Tier 2 GE[@drevalGeneticSubdivisionsFollicular2023], FE[@almasmoumFrequentLossBTG12021], aSHM|[Dreval et al](papers/drevalGeneticSubdivisionsFollicular2023)|[@burkhardtClinicalRelevanceMolecular2022; @morinFrequentMutationHistonemodifying2011; @sarkozyMutationalLandscapeGray2021]||
84
-|[BTG2](BTG2)|Tier 2 GE[@drevalGeneticSubdivisionsFollicular2023], aSHM|[Dreval et al](papers/drevalGeneticSubdivisionsFollicular2023)|[@loveGeneticLandscapeMutations2012; @morinFrequentMutationHistonemodifying2011]||
85
-|[CD70](CD70)|Tier 2 GE[@russler-germainMutationsAssociatedProgression2023], FE[@nieDualRoleCD702022]|[Russler-germain et al](papers/russler-germainMutationsAssociatedProgression2023)|[@morinFrequentMutationHistonemodifying2011]||
86
-|[CD79B](CD79B)|Tier 2 GE[@drevalGeneticSubdivisionsFollicular2023], FE[@davisChronicActiveBcellreceptor2010]|[Dreval et al](papers/drevalGeneticSubdivisionsFollicular2023)|[@davisChronicActiveBcellreceptor2010; @paneaWholeGenomeLandscape2019]||
87
-|[CDC42BPB](CDC42BPB)|Tier 2 GE[@hubschmannMutationalMechanismsShaping2021]|[Hubschmann et al](papers/hubschmannMutationalMechanismsShaping2021)|[@spinaGeneticsNodalMarginal2016]||
88
-|[CILP](CILP)|Tier 2 GE[@russler-germainMutationsAssociatedProgression2023]|[Russler-germain et al](papers/russler-germainMutationsAssociatedProgression2023)|||
89
-|[CPNE8](CPNE8)|Tier 2 GE[@hubschmannMutationalMechanismsShaping2021]|[Hubschmann et al](papers/hubschmannMutationalMechanismsShaping2021)|||
90
-|[CXCR4](CXCR4)|Tier 2 GE[@krysiakRecurrentSomaticMutations2017], FE[@zmajkovicovaGenotypephenotypeCorrelationsWHIM2022], aSHM|[Krysiak et al](papers/krysiakRecurrentSomaticMutations2017)|[@khodabakhshiRecurrentTargetsAberrant2012; @paneaWholeGenomeLandscape2019]||
91
-|[CYP2A6](CYP2A6)|Tier 2 GE[@russler-germainMutationsAssociatedProgression2023]|[Russler-germain et al](papers/russler-germainMutationsAssociatedProgression2023)|||
92
-|[DDX3X](DDX3X)|Tier 2 GE, FE[@gongSequentialInverseDysregulation2021]||[@mottokIntegrativeGenomicAnalysis2019; @reddyGeneticFunctionalDrivers2017; @schmitzBurkittLymphomaPathogenesis2012]||
93
-|[DHX15](DHX15)|Tier 2 GE[@hubschmannMutationalMechanismsShaping2021]|[Hubschmann et al](papers/hubschmannMutationalMechanismsShaping2021)|||
94
-|[DTX1](DTX1)|Tier 2 GE, aSHM||[@gomezUltraDeepSequencingReveals2023; @loveGeneticLandscapeMutations2012; @rossiCodingGenomeSplenic2012; @zhangGeneticHeterogeneityDiffuse2013]||
95
-|[DUSP2](DUSP2)|Tier 2 GE[@drevalGeneticSubdivisionsFollicular2023], aSHM|[Dreval et al](papers/drevalGeneticSubdivisionsFollicular2023)|[@dunsCharacterizationDLBCLPMBL2021; @lohrDiscoveryPrioritizationSomatic2012]||
96
-|[EGR1](EGR1)|Tier 2 GE[@krysiakRecurrentSomaticMutations2017]|[Krysiak et al](papers/krysiakRecurrentSomaticMutations2017)|[@reichelFlowSortingExome2015; @rossiCodingGenomeSplenic2012]||
97
-|[FZR1](FZR1)|Tier 2 GE[@hubschmannMutationalMechanismsShaping2021]|[Hubschmann et al](papers/hubschmannMutationalMechanismsShaping2021)|||
98
-|[GBP7](GBP7)|Tier 2 GE[@russler-germainMutationsAssociatedProgression2023]|[Russler-germain et al](papers/russler-germainMutationsAssociatedProgression2023)|||
99
-|[GRM6](GRM6)|Tier 2 GE[@russler-germainMutationsAssociatedProgression2023]|[Russler-germain et al](papers/russler-germainMutationsAssociatedProgression2023)|||
100
-|[HIST1H2BD](HIST1H2BD)|Tier 2 GE[@krysiakRecurrentSomaticMutations2017]|[Krysiak et al](papers/krysiakRecurrentSomaticMutations2017)|||
101
-|[HIST1H2BM](HIST1H2BM)|Tier 2 GE[@krysiakRecurrentSomaticMutations2017]|[Krysiak et al](papers/krysiakRecurrentSomaticMutations2017)|||
102
-|[HIST1H3B](HIST1H3B)|Tier 2 GE, aSHM||[@lohrDiscoveryPrioritizationSomatic2012; @reichelFlowSortingExome2015]||
103
-|[HIST1H3G](HIST1H3G)|Tier 2 GE[@krysiakRecurrentSomaticMutations2017]|[Krysiak et al](papers/krysiakRecurrentSomaticMutations2017)|||
104
-|[HIST1H3I](HIST1H3I)|Tier 2 GE[@krysiakRecurrentSomaticMutations2017]|[Krysiak et al](papers/krysiakRecurrentSomaticMutations2017)|[@paneaWholeGenomeLandscape2019]||
105
-|[HLA-B](HLA-B)|Tier 2 GE, FE[@fangazioGeneticMechanismsHLAI2021]||[@lohrDiscoveryPrioritizationSomatic2012; @wienandGenomicAnalysesFlowsorted2019]||
106
-|[IGLL5](IGLL5)|Tier 2 GE[@russler-germainMutationsAssociatedProgression2023], aSHM|[Russler-germain et al](papers/russler-germainMutationsAssociatedProgression2023)|[@chapuyMolecularSubtypesDiffuse2018; @deschGenotypingCirculatingTumor2020; @paneaWholeGenomeLandscape2019]||
107
-|[ITPKB](ITPKB)|Tier 2 GE[@drevalGeneticSubdivisionsFollicular2023], FE[@tiacciPervasiveMutationsJAKSTAT2018], aSHM|[Dreval et al](papers/drevalGeneticSubdivisionsFollicular2023)|[@reichelFlowSortingExome2015; @schmitzGeneticsPathogenesisDiffuse2018]||
108
-|[JUP](JUP)|Tier 2 GE[@hubschmannMutationalMechanismsShaping2021]|[Hubschmann et al](papers/hubschmannMutationalMechanismsShaping2021)|||
109
-|[KIR3DL1](KIR3DL1)|Tier 2 GE[@russler-germainMutationsAssociatedProgression2023]|[Russler-germain et al](papers/russler-germainMutationsAssociatedProgression2023)|||
110
-|[KLF2](KLF2)|Tier 2 GE[@drevalGeneticSubdivisionsFollicular2023], aSHM|[Dreval et al](papers/drevalGeneticSubdivisionsFollicular2023)|[@deschGenotypingCirculatingTumor2020; @jalladesExomeSequencingIdentifies2017; @pasqualucciAnalysisCodingGenome2011]||
111
-|[LAPTM5](LAPTM5)|Tier 2 GE[@hubschmannMutationalMechanismsShaping2021], aSHM|[Hubschmann et al](papers/hubschmannMutationalMechanismsShaping2021)|||
112
-|[LTB](LTB)|Tier 2 GE[@drevalGeneticSubdivisionsFollicular2023], aSHM|[Dreval et al](papers/drevalGeneticSubdivisionsFollicular2023)|[@chapuyMolecularSubtypesDiffuse2018; @deschGenotypingCirculatingTumor2020]||
113
-|[MAGEC1](MAGEC1)|Tier 2 GE[@russler-germainMutationsAssociatedProgression2023]|[Russler-germain et al](papers/russler-germainMutationsAssociatedProgression2023)|||
114
-|[MAP7D1](MAP7D1)|Tier 2 GE[@russler-germainMutationsAssociatedProgression2023]|[Russler-germain et al](papers/russler-germainMutationsAssociatedProgression2023)|||
115
-|[MEF2C](MEF2C)|Tier 2 GE, aSHM||[@hubschmannMutationalMechanismsShaping2021]||
116
-|[MGEA5](MGEA5)|Tier 2 GE[@hubschmannMutationalMechanismsShaping2021]|[Hubschmann et al](papers/hubschmannMutationalMechanismsShaping2021)|||
117
-|[MKI67](MKI67)|Tier 2 GE[@russler-germainMutationsAssociatedProgression2023]|[Russler-germain et al](papers/russler-germainMutationsAssociatedProgression2023)|[@schmitzBurkittLymphomaPathogenesis2012]||
118
-|[MYCBP2](MYCBP2)|Tier 2 GE[@hubschmannMutationalMechanismsShaping2021]|[Hubschmann et al](papers/hubschmannMutationalMechanismsShaping2021)|||
119
-|[MYD88](MYD88)|Tier 2 GE[@drevalGeneticSubdivisionsFollicular2023], FE[@ngoOncogenicallyActiveMYD882011]|[Dreval et al](papers/drevalGeneticSubdivisionsFollicular2023)|[@ngoOncogenicallyActiveMYD882011; @yanBCRTLRSignaling2012]||
120
-|[NFKBIA](NFKBIA)|Tier 2 GE[@russler-germainMutationsAssociatedProgression2023], FE[@jungnickelClonalDeleteriousMutations2000]|[Russler-germain et al](papers/russler-germainMutationsAssociatedProgression2023)|[@thomasMutationalAnalysisIkappaBalpha2004; @wienandGenomicAnalysesFlowsorted2019]||
121
-|[OR8H2](OR8H2)|Tier 2 GE[@russler-germainMutationsAssociatedProgression2023]|[Russler-germain et al](papers/russler-germainMutationsAssociatedProgression2023)|||
122
-|[P2RY8](P2RY8)|Tier 2 GE[@drevalGeneticSubdivisionsFollicular2023], FE[@muppidiLossSignalingGa132014]|[Dreval et al](papers/drevalGeneticSubdivisionsFollicular2023)|[@lohrDiscoveryPrioritizationSomatic2012; @muppidiLossSignalingGa132014]||
123
-|[PDS5B](PDS5B)|Tier 2 GE[@hubschmannMutationalMechanismsShaping2021]|[Hubschmann et al](papers/hubschmannMutationalMechanismsShaping2021)|[@morinMutationalStructuralAnalysis2013]||
124
-|[PPP4C](PPP4C)|Tier 2 GE[@hubschmannMutationalMechanismsShaping2021]|[Hubschmann et al](papers/hubschmannMutationalMechanismsShaping2021)|||
125
-|[PRKDC](PRKDC)|Tier 2 GE[@hubschmannMutationalMechanismsShaping2021]|[Hubschmann et al](papers/hubschmannMutationalMechanismsShaping2021)|[@schmitzGeneticsPathogenesisDiffuse2018]||
126
-|[PTPRD](PTPRD)|Tier 2 GE[@drevalGeneticSubdivisionsFollicular2023]|[Dreval et al](papers/drevalGeneticSubdivisionsFollicular2023)|[@spinaGeneticsNodalMarginal2016]||
127
-|[PZP](PZP)|Tier 2 GE[@russler-germainMutationsAssociatedProgression2023]|[Russler-germain et al](papers/russler-germainMutationsAssociatedProgression2023)|||
128
-|[RBM6](RBM6)|Tier 2 GE[@hubschmannMutationalMechanismsShaping2021]|[Hubschmann et al](papers/hubschmannMutationalMechanismsShaping2021)|||
129
-|[S1PR2](S1PR2)|Tier 2 GE[@drevalGeneticSubdivisionsFollicular2023], FE[@muppidiLossSignalingGa132014], aSHM|[Dreval et al](papers/drevalGeneticSubdivisionsFollicular2023)|[@morinFrequentMutationHistonemodifying2011; @muppidiLossSignalingGa132014]||
130
-|[SHROOM3](SHROOM3)|Tier 2 GE[@russler-germainMutationsAssociatedProgression2023]|[Russler-germain et al](papers/russler-germainMutationsAssociatedProgression2023)|||
131
-|[SRRM2](SRRM2)|Tier 2 GE[@russler-germainMutationsAssociatedProgression2023]|[Russler-germain et al](papers/russler-germainMutationsAssociatedProgression2023)|[@morinMutationalStructuralAnalysis2013]||
132
-|[STAB2](STAB2)|Tier 2 GE[@russler-germainMutationsAssociatedProgression2023]|[Russler-germain et al](papers/russler-germainMutationsAssociatedProgression2023)|||
133
-|[TMEM30A](TMEM30A)|Tier 2 GE[@morinFrequentMutationHistonemodifying2011], FE[@ennishiTMEM30ALossoffunctionMutations2020]|[Morin et al](papers/morinFrequentMutationHistonemodifying2011)|||
134
-|[TPP1](TPP1)|Tier 2 GE[@hubschmannMutationalMechanismsShaping2021]|[Hubschmann et al](papers/hubschmannMutationalMechanismsShaping2021)|||
135
-|[XIRP2](XIRP2)|Tier 2 GE[@russler-germainMutationsAssociatedProgression2023]|[Russler-germain et al](papers/russler-germainMutationsAssociatedProgression2023)|||
136
-|[ZC3H12A](ZC3H12A)|Tier 2 GE, FE[@skalniakRegulatoryFeedbackLoop2009]||[@chapuyMolecularSubtypesDiffuse2018]||
137
-|[ZNF608](ZNF608)|Tier 2 GE[@krysiakRecurrentSomaticMutations2017]|[Krysiak et al](papers/krysiakRecurrentSomaticMutations2017)|[@morinMutationalStructuralAnalysis2013]||
21
+[[include:FL_Tier2.md]]
138 22
139 23
## Tier 3 FL genes
140 24
141
-### *0 total*
142
-
143
-|Gene|Summary| First FL study | Other entities | QC result |
144
-|:-:|:--:|:-:|:-|:-|
145
-
25
+[[include:FL_Tier3.md]]
146 26
147 27
# References