BL_genes.md
... ...
@@ -4,32 +4,33 @@
4 4
5 5
## Tier 1 BL genes
6 6
7
-### *28 total*
7
+### *29 total*
8 8
9 9
| Gene | Tier | Relevant references |
10 10
|:------------------:|:-------:|:---------------------------------------------------------------------------------|
11
-| [ARID1A](ARID1A) | 1 | Love et al. 2012; Krysiak et al. 2017; Zhang et al. 2013 |
11
+| [ARID1A](ARID1A) | 1 | Love et al. 2012; Zhang et al. 2013; Krysiak et al. 2017 |
12
+| [BCL7A](BCL7A) | 1, aSHM | Arthur et al. 2018; Grande et al. 2019; Krysiak et al. 2017 |
12 13
| [BMP7](BMP7) | 1 | Panea et al. 2019 |
13 14
| [CCND3](CCND3) | 1 | Morin et al. 2011; Richter et al. 2012 |
14
-| [CHD8](CHD8) | 1 | Grande et al. 2019; Reddy et al. 2017 |
15
+| [CHD8](CHD8) | 1 | Reddy et al. 2017; Grande et al. 2019 |
15 16
| [DDX3X](DDX3X) | 1 | Schmitz et al. 2018, 2012 |
16 17
| [EIF4A1](EIF4A1) | 1 | Panea et al. 2019 |
17 18
| [EPPK1](EPPK1) | 1 | Panea et al. 2019 |
18
-| [FBXO11](FBXO11) | 1 | Hübschmann et al. 2021; Richter et al. 2012 |
19
+| [FBXO11](FBXO11) | 1 | Richter et al. 2012; Hübschmann et al. 2021 |
19 20
| [FOXO1](FOXO1) | 1 | Schmitz et al. 2012; Morin et al. 2011 |
20 21
| [GNA13](GNA13) | 1 | Love et al. 2012; Morin et al. 2011 |
21
-| [GNAI2](GNAI2) | 1 | Grande et al. 2019; Morin et al. 2013 |
22
-| [HNRNPU](HNRNPU) | 1, aSHM | Panea et al. 2019; Reddy et al. 2017 |
22
+| [GNAI2](GNAI2) | 1 | Morin et al. 2013; Grande et al. 2019 |
23
+| [HNRNPU](HNRNPU) | 1, aSHM | Reddy et al. 2017; Panea et al. 2019 |
23 24
| [ID3](ID3) | 1 | Schmitz et al. 2012; Richter et al. 2012 |
24
-| [KMT2D](KMT2D) | 1 | Morin et al. 2011; Grande et al. 2019; Beà et al. 2013 |
25
-| [MYC](MYC) | 1, aSHM | Johnston and Carroll 1992; L. Pasqualucci et al. 2001 |
26
-| [P2RY8](P2RY8) | 1 | Muppidi et al. 2014; Lohr et al. 2012 |
25
+| [KMT2D](KMT2D) | 1 | Grande et al. 2019; Beà et al. 2013; Morin et al. 2011 |
26
+| [MYC](MYC) | 1, aSHM | L. Pasqualucci et al. 2001; Johnston and Carroll 1992 |
27
+| [P2RY8](P2RY8) | 1 | Lohr et al. 2012; Muppidi et al. 2014 |
27 28
| [PHF6](PHF6) | 1 | Reddy et al. 2017; Thomas et al. 2023 |
28 29
| [PTEN](PTEN) | 1 | Love et al. 2012 |
29 30
| [RFX7](RFX7) | 1 | Grande et al. 2019 |
30 31
| [RHOA](RHOA) | 1 | Richter et al. 2012 |
31 32
| [SIN3A](SIN3A) | 1 | Grande et al. 2019 |
32
-| [SMARCA4](SMARCA4) | 1 | Zhang et al. 2013; Nadeu et al. 2020; Krysiak et al. 2017; Richter et al. 2012 |
33
+| [SMARCA4](SMARCA4) | 1 | Krysiak et al. 2017; Zhang et al. 2013; Nadeu et al. 2020; Richter et al. 2012 |
33 34
| [TCF3](TCF3) | 1 | Schmitz et al. 2012 |
34 35
| [TCL1A](TCL1A) | 1 | Grande et al. 2019 |
35 36
| [TFAP4](TFAP4) | 1 | Grande et al. 2019 |
... ...
@@ -39,7 +40,7 @@
39 40
40 41
## Tier 2 BL genes
41 42
42
-### *158 total*
43
+### *157 total*
43 44
44 45
| Gene | Tier | Relevant references |
45 46
|:----------------------:|:-------:|:------------------------------------------------------------------------------|
... ...
@@ -52,9 +53,8 @@
52 53
| [ARHGEF1](ARHGEF1) | 2 | Muppidi et al. 2014 |
53 54
| [ATP2C2](ATP2C2) | 2 | Love et al. 2012 |
54 55
| [BACH2](BACH2) | 2, aSHM | Grande et al. 2019 |
55
-| [BCL2](BCL2) | 2, aSHM | Morin et al. 2011; Tanaka et al. 1992; Burkhardt et al. 2022 |
56
-| [BCL6](BCL6) | 2, aSHM | Love et al. 2012; Morin et al. 2011 |
57
-| [BCL7A](BCL7A) | 2, aSHM | Grande et al. 2019; Krysiak et al. 2017; Arthur et al. 2018 |
56
+| [BCL2](BCL2) | 2, aSHM | Morin et al. 2011; Burkhardt et al. 2022; Tanaka et al. 1992 |
57
+| [BCL6](BCL6) | 2, aSHM | Morin et al. 2011; Love et al. 2012 |
58 58
| [BRAF](BRAF) | 2 | Tiacci et al. 2011; Love et al. 2012 |
59 59
| [BRD4](BRD4) | 2 | Love et al. 2012 |
60 60
| [BTG1](BTG1) | 2, aSHM | Burkhardt et al. 2022; Morin et al. 2011 |
... ...
@@ -62,23 +62,23 @@
62 62
| [C16orf48](C16orf48) | 2 | Schmitz et al. 2012 |
63 63
| [C6orf27](C6orf27) | 2 | Love et al. 2012 |
64 64
| [CAD](CAD) | 2 | Love et al. 2012 |
65
-| [CARD11](CARD11) | 2 | Wu et al. 2016; Morin et al. 2011; Lenz et al. 2008; Panea et al. 2019 |
65
+| [CARD11](CARD11) | 2 | Panea et al. 2019; Lenz et al. 2008; Wu et al. 2016; Morin et al. 2011 |
66 66
| [CARD4](CARD4) | 2 | Love et al. 2012 |
67 67
| [CCNF](CCNF) | 2 | Abate et al. 2015 |
68 68
| [CCT6B](CCT6B) | 2 | Love et al. 2012 |
69 69
| [CD79A](CD79A) | 2 | Burkhardt et al. 2022 |
70
-| [CD79B](CD79B) | 2 | Panea et al. 2019; Morin et al. 2011 |
71
-| [CD83](CD83) | 2, aSHM | Panea et al. 2019; Russler-Germain et al. 2023; Morin et al. 2013 |
70
+| [CD79B](CD79B) | 2 | Morin et al. 2011; Panea et al. 2019 |
71
+| [CD83](CD83) | 2, aSHM | Russler-Germain et al. 2023; Panea et al. 2019; Morin et al. 2013 |
72 72
| [CDC73](CDC73) | 2 | Love et al. 2012; Reddy et al. 2017 |
73 73
| [CDH17](CDH17) | 2 | Love et al. 2012 |
74
-| [CDKN2A](CDKN2A) | 2 | Morin et al. 2013; Grande et al. 2019 |
74
+| [CDKN2A](CDKN2A) | 2 | Grande et al. 2019; Morin et al. 2013 |
75 75
| [CDKN2C](CDKN2C) | 2 | Thomas et al. 2023 |
76 76
| [CHD4](CHD4) | 2 | Burkhardt et al. 2022 |
77 77
| [COL4A2](COL4A2) | 2 | Love et al. 2012 |
78 78
| [CPXM2](CPXM2) | 2 | Burkhardt et al. 2022 |
79 79
| [CREBBP](CREBBP) | 2 | Love et al. 2012; Laura Pasqualucci, Dominguez-Sola, et al. 2011 |
80 80
| [CTCF](CTCF) | 2 | Panea et al. 2019 |
81
-| [CXCR4](CXCR4) | 2, aSHM | Panea et al. 2019; Krysiak et al. 2017; Khodabakhshi et al. 2012 |
81
+| [CXCR4](CXCR4) | 2, aSHM | Krysiak et al. 2017; Panea et al. 2019; Khodabakhshi et al. 2012 |
82 82
| [CYB5D1](CYB5D1) | 2 | Love et al. 2012 |
83 83
| [CYP4F22](CYP4F22) | 2 | Love et al. 2012 |
84 84
| [DHCR7](DHCR7) | 2 | Schmitz et al. 2012 |
... ...
@@ -93,10 +93,10 @@
93 93
| [ELP2](ELP2) | 2 | Schmitz et al. 2012 |
94 94
| [EML2](EML2) | 2 | Love et al. 2012 |
95 95
| [ENTPD3](ENTPD3) | 2 | Love et al. 2012 |
96
-| [EP300](EP300) | 2 | Laura Pasqualucci, Dominguez-Sola, et al. 2011; Panea et al. 2019 |
96
+| [EP300](EP300) | 2 | Panea et al. 2019; Laura Pasqualucci, Dominguez-Sola, et al. 2011 |
97 97
| [EPHB2](EPHB2) | 2 | Love et al. 2012 |
98 98
| [ERAP1](ERAP1) | 2 | Burkhardt et al. 2022 |
99
-| [ETS1](ETS1) | 2, aSHM | Panea et al. 2019; Morin et al. 2011 |
99
+| [ETS1](ETS1) | 2, aSHM | Morin et al. 2011; Panea et al. 2019 |
100 100
| [EXOSC6](EXOSC6) | 2 | Schmitz et al. 2012 |
101 101
| [EZH2](EZH2) | 2 | Morin et al. 2010; Love et al. 2012 |
102 102
| [FAM129B](FAM129B) | 2 | Love et al. 2012 |
... ...
@@ -109,13 +109,13 @@
109 109
| [GRIK5](GRIK5) | 2 | Love et al. 2012 |
110 110
| [GTSE1](GTSE1) | 2 | Schmitz et al. 2012 |
111 111
| [HIST1H1C](HIST1H1C) | 2, aSHM | Morin et al. 2011; Panea et al. 2019 |
112
-| [HIST1H1E](HIST1H1E) | 2, aSHM | Grande et al. 2019; Krysiak et al. 2017; Morin et al. 2013 |
113
-| [HIST1H2AG](HIST1H2AG) | 2, aSHM | Panea et al. 2019; Krysiak et al. 2017; Morin et al. 2013 |
112
+| [HIST1H1E](HIST1H1E) | 2, aSHM | Grande et al. 2019; Morin et al. 2013; Krysiak et al. 2017 |
113
+| [HIST1H2AG](HIST1H2AG) | 2, aSHM | Krysiak et al. 2017; Morin et al. 2013; Panea et al. 2019 |
114 114
| [HIST1H2AM](HIST1H2AM) | 2, aSHM | Panea et al. 2019; Krysiak et al. 2017 |
115 115
| [HIST1H2BK](HIST1H2BK) | 2, aSHM | Panea et al. 2019 |
116 116
| [HIST1H3D](HIST1H3D) | 2, aSHM | Panea et al. 2019 |
117 117
| [HIST1H3H](HIST1H3H) | 2, aSHM | Panea et al. 2019 |
118
-| [HIST1H3I](HIST1H3I) | 2, aSHM | Krysiak et al. 2017; Panea et al. 2019 |
118
+| [HIST1H3I](HIST1H3I) | 2, aSHM | Panea et al. 2019; Krysiak et al. 2017 |
119 119
| [HIST1H3J](HIST1H3J) | 2, aSHM | Panea et al. 2019 |
120 120
| [HIST1H4J](HIST1H4J) | 2, aSHM | Panea et al. 2019 |
121 121
| [HLA-A](HLA-A) | 2 | |
... ...
@@ -125,28 +125,28 @@
125 125
| [ICK](ICK) | 2 | Love et al. 2012 |
126 126
| [IGLL5](IGLL5) | 2, aSHM | Panea et al. 2019; Russler-Germain et al. 2023 |
127 127
| [IKZF3](IKZF3) | 2, aSHM | Morin et al. 2013; Panea et al. 2019 |
128
-| [IRF8](IRF8) | 2, aSHM | Morin et al. 2011; Panea et al. 2019 |
128
+| [IRF8](IRF8) | 2, aSHM | Panea et al. 2019; Morin et al. 2011 |
129 129
| [ITPR3](ITPR3) | 2 | Love et al. 2012 |
130 130
| [KANK2](KANK2) | 2 | Schmitz et al. 2012 |
131 131
| [KCNK10](KCNK10) | 2 | Panea et al. 2019 |
132 132
| [KIFC3](KIFC3) | 2 | Love et al. 2012 |
133 133
| [KLHL26](KLHL26) | 2 | Burkhardt et al. 2022 |
134 134
| [KLHL6](KLHL6) | 2, aSHM | Panea et al. 2019; Morin et al. 2011 |
135
-| [KMT2C](KMT2C) | 2 | Zhang et al. 2013; Zhou et al. 2019; Zhang et al. 2014 |
135
+| [KMT2C](KMT2C) | 2 | Zhou et al. 2019; Zhang et al. 2014; Zhang et al. 2013 |
136 136
| [LTB](LTB) | 2, aSHM | Chapuy et al. 2018; Panea et al. 2019 |
137 137
| [MAP3K6](MAP3K6) | 2 | Love et al. 2012 |
138 138
| [MCL1](MCL1) | 2 | Panea et al. 2019; Reddy et al. 2017 |
139 139
| [MIR142](MIR142) | 2, aSHM | Kwanhian et al. 2012; Grande et al. 2019 |
140 140
| [MKI67](MKI67) | 2 | Schmitz et al. 2012; Russler-Germain et al. 2023 |
141 141
| [MME](MME) | 2 | Panea et al. 2019 |
142
-| [MTOR](MTOR) | 2 | Panea et al. 2019; Zhang et al. 2013 |
142
+| [MTOR](MTOR) | 2 | Zhang et al. 2013; Panea et al. 2019 |
143 143
| [MYH10](MYH10) | 2 | Love et al. 2012 |
144 144
| [MYO18A](MYO18A) | 2 | Schmitz et al. 2012 |
145 145
| [NBEAL1](NBEAL1) | 2 | Love et al. 2012 |
146 146
| [NCOR2](NCOR2) | 2 | Schmitz et al. 2012 |
147 147
| [NOA1](NOA1) | 2 | Burkhardt et al. 2022 |
148
-| [NOTCH1](NOTCH1) | 2 | Laura Pasqualucci, Trifonov, et al. 2011; Love et al. 2012; Beà et al. 2013 |
149
-| [NOTCH2](NOTCH2) | 2 | Panea et al. 2019; Beà et al. 2013; Trøen et al. 2008 |
148
+| [NOTCH1](NOTCH1) | 2 | Beà et al. 2013; Laura Pasqualucci, Trifonov, et al. 2011; Love et al. 2012 |
149
+| [NOTCH2](NOTCH2) | 2 | Panea et al. 2019; Trøen et al. 2008; Beà et al. 2013 |
150 150
| [NRXN2](NRXN2) | 2 | Love et al. 2012 |
151 151
| [P2RY2](P2RY2) | 2 | Love et al. 2012 |
152 152
| [PABPC4L](PABPC4L) | 2 | Panea et al. 2019 |
... ...
@@ -155,7 +155,7 @@
155 155
| [PCDHA11](PCDHA11) | 2 | Panea et al. 2019 |
156 156
| [PDCD11](PDCD11) | 2 | Schmitz et al. 2012 |
157 157
| [PDZRN3](PDZRN3) | 2 | Panea et al. 2019 |
158
-| [PIK3R1](PIK3R1) | 2 | Zhang et al. 2013; Panea et al. 2019 |
158
+| [PIK3R1](PIK3R1) | 2 | Panea et al. 2019; Zhang et al. 2013 |
159 159
| [PIM1](PIM1) | 2, aSHM | Burkhardt et al. 2022; L. Pasqualucci et al. 2001 |
160 160
| [PLCG2](PLCG2) | 2 | Panea et al. 2019 |
161 161
| [POLRMT](POLRMT) | 2 | Love et al. 2012 |
... ...
@@ -174,7 +174,7 @@
174 174
| [RPL10](RPL10) | 2 | Burkhardt et al. 2022 |
175 175
| [S1PR2](S1PR2) | 2, aSHM | Muppidi et al. 2014; Morin et al. 2011 |
176 176
| [SAL3](SAL3) | 2 | Burkhardt et al. 2022 |
177
-| [SALL3](SALL3) | 2 | Zhang et al. 2014; Love et al. 2012 |
177
+| [SALL3](SALL3) | 2 | Love et al. 2012; Zhang et al. 2014 |
178 178
| [SAPS2](SAPS2) | 2 | Love et al. 2012 |
179 179
| [SBF1](SBF1) | 2 | Love et al. 2012 |
180 180
| [SF3B1](SF3B1) | 2 | Love et al. 2012 |
... ...
@@ -185,7 +185,7 @@
185 185
| [SYNCRIP](SYNCRIP) | 2 | Panea et al. 2019 |
186 186
| [SYNGAP1](SYNGAP1) | 2 | Love et al. 2012 |
187 187
| [TBC1D9B](TBC1D9B) | 2 | Love et al. 2012 |
188
-| [TET2](TET2) | 2 | Albuquerque et al. 2017; Panea et al. 2019 |
188
+| [TET2](TET2) | 2, aSHM | Panea et al. 2019; Albuquerque et al. 2017 |
189 189
| [TIGD6](TIGD6) | 2 | Love et al. 2012 |
190 190
| [TOP2A](TOP2A) | 2 | Schmitz et al. 2012 |
191 191
| [TPST2](TPST2) | 2 | Love et al. 2012 |
... ...
@@ -198,7 +198,7 @@
198 198
| [YY1AP1](YY1AP1) | 2 | Schmitz et al. 2012 |
199 199
| [ZAN](ZAN) | 2 | Burkhardt et al. 2022 |
200 200
| [ZBTB7A](ZBTB7A) | 2 | Reddy et al. 2017; Burkhardt et al. 2022 |
201
-| [ZFP36L1](ZFP36L1) | 2, aSHM | Morin et al. 2011; Panea et al. 2019 |
201
+| [ZFP36L1](ZFP36L1) | 2, aSHM | Panea et al. 2019; Morin et al. 2011 |
202 202
| [ZNF229](ZNF229) | 2 | Love et al. 2012 |
203 203
| [ZNF85](ZNF85) | 2 | Burkhardt et al. 2022 |
204 204
DLBCL_genes.md
... ...
@@ -10,33 +10,33 @@
10 10
|:----------------------:|:------------:|:---------------------------------------------------------------------------------|
11 11
| [ACTB](ACTB) | 1, aSHM | Lohr et al. 2012 |
12 12
| [ACTG1](ACTG1) | 1, aSHM | Hübschmann et al. 2021 |
13
-| [ARID1A](ARID1A) | 1 | Krysiak et al. 2017; Love et al. 2012; Zhang et al. 2013 |
14
-| [ATM](ATM) | 1 | Reddy et al. 2017; Beà et al. 2013 |
15
-| [B2M](B2M) | 1 | Morin et al. 2011; Pararajalingam et al. 2020 |
16
-| [BCL10](BCL10) | 1 | Russler-Germain et al. 2023; Morin et al. 2011 |
17
-| [BCL2](BCL2) | 1, aSHM | Morin et al. 2011; Tanaka et al. 1992; Burkhardt et al. 2022 |
13
+| [ARID1A](ARID1A) | 1 | Zhang et al. 2013; Krysiak et al. 2017; Love et al. 2012 |
14
+| [ATM](ATM) | 1 | Beà et al. 2013; Reddy et al. 2017 |
15
+| [B2M](B2M) | 1 | Pararajalingam et al. 2020; Morin et al. 2011 |
16
+| [BCL10](BCL10) | 1 | Morin et al. 2011; Russler-Germain et al. 2023 |
17
+| [BCL2](BCL2) | 1, aSHM | Morin et al. 2011; Burkhardt et al. 2022; Tanaka et al. 1992 |
18 18
| [BCL6](BCL6) | 1, aSHM | Morin et al. 2011; Love et al. 2012 |
19
-| [BCL7A](BCL7A) | 1, aSHM | Arthur et al. 2018; Krysiak et al. 2017; Grande et al. 2019 |
19
+| [BCL7A](BCL7A) | 1, aSHM | Grande et al. 2019; Arthur et al. 2018; Krysiak et al. 2017 |
20 20
| [BIRC6](BIRC6) | 1 | Reddy et al. 2017 |
21
-| [BRAF](BRAF) | 1 | Tiacci et al. 2011; Love et al. 2012 |
22
-| [BTG1](BTG1) | 1, aSHM | Morin et al. 2011; Burkhardt et al. 2022 |
23
-| [BTG2](BTG2) | 1, aSHM | Love et al. 2012; Morin et al. 2011 |
24
-| [BTK](BTK) | 1 | Albuquerque et al. 2017; Krysiak et al. 2017 |
25
-| [CARD11](CARD11) | 1 | Wu et al. 2016; Morin et al. 2011; Lenz et al. 2008; Panea et al. 2019 |
21
+| [BRAF](BRAF) | 1 | Love et al. 2012; Tiacci et al. 2011 |
22
+| [BTG1](BTG1) | 1, aSHM | Burkhardt et al. 2022; Morin et al. 2011 |
23
+| [BTG2](BTG2) | 1, aSHM | Morin et al. 2011; Love et al. 2012 |
24
+| [BTK](BTK) | 1 | Krysiak et al. 2017; Albuquerque et al. 2017 |
25
+| [CARD11](CARD11) | 1 | Morin et al. 2011; Lenz et al. 2008; Panea et al. 2019; Wu et al. 2016 |
26 26
| [CCND3](CCND3) | 1 | Richter et al. 2012; Morin et al. 2011 |
27 27
| [CD58](CD58) | 1 | Morin et al. 2011 |
28 28
| [CD70](CD70) | 1 | Morin et al. 2011; Russler-Germain et al. 2023 |
29
-| [CD79B](CD79B) | 1 | Morin et al. 2011; Panea et al. 2019 |
30
-| [CD83](CD83) | 1, aSHM | Panea et al. 2019; Russler-Germain et al. 2023; Morin et al. 2013 |
29
+| [CD79B](CD79B) | 1 | Panea et al. 2019; Morin et al. 2011 |
30
+| [CD83](CD83) | 1, aSHM | Russler-Germain et al. 2023; Panea et al. 2019; Morin et al. 2013 |
31 31
| [CDKN2A](CDKN2A) | 1 | Grande et al. 2019; Morin et al. 2013 |
32 32
| [CIITA](CIITA) | 1, aSHM | Morin et al. 2011 |
33 33
| [CREBBP](CREBBP) | 1 | Love et al. 2012; Laura Pasqualucci, Dominguez-Sola, et al. 2011 |
34
-| [CXCR4](CXCR4) | 1, aSHM | Panea et al. 2019; Krysiak et al. 2017; Khodabakhshi et al. 2012 |
34
+| [CXCR4](CXCR4) | 1, aSHM | Panea et al. 2019; Khodabakhshi et al. 2012; Krysiak et al. 2017 |
35 35
| [CXCR5](CXCR5) | 1 | Schmitz et al. 2018 |
36
-| [DDX3X](DDX3X) | 1 | Schmitz et al. 2012, 2018 |
37
-| [DTX1](DTX1) | 1, aSHM | Panea et al. 2019; Schmitz et al. 2018 |
36
+| [DDX3X](DDX3X) | 1 | Schmitz et al. 2018, 2012 |
37
+| [DTX1](DTX1) | 1, aSHM | Schmitz et al. 2018; Panea et al. 2019 |
38 38
| [DUSP2](DUSP2) | 1, aSHM | Morin et al. 2013 |
39
-| [EBF1](EBF1) | 1, aSHM | Thomas et al. 2023; Bohle et al. 2013 |
39
+| [EBF1](EBF1) | 1, aSHM | Bohle et al. 2013; Thomas et al. 2023 |
40 40
| [EEF1A1](EEF1A1) | 1 | Hübschmann et al. 2021 |
41 41
| [EP300](EP300) | 1 | Laura Pasqualucci, Dominguez-Sola, et al. 2011; Panea et al. 2019 |
42 42
| [ETS1](ETS1) | 1, aSHM | Panea et al. 2019; Morin et al. 2011 |
... ...
@@ -45,18 +45,18 @@
45 45
| [FAS](FAS) | 1 | Scholl et al. 2007 |
46 46
| [FBXO11](FBXO11) | 1 | Hübschmann et al. 2021; Richter et al. 2012 |
47 47
| [FBXW7](FBXW7) | 1 | Zhang et al. 2013 |
48
-| [FOXO1](FOXO1) | 1 | Schmitz et al. 2012; Morin et al. 2011 |
49
-| [GNA13](GNA13) | 1 | Love et al. 2012; Morin et al. 2011 |
48
+| [FOXO1](FOXO1) | 1 | Morin et al. 2011; Schmitz et al. 2012 |
49
+| [GNA13](GNA13) | 1 | Morin et al. 2011; Love et al. 2012 |
50 50
| [GNAI2](GNAI2) | 1 | Morin et al. 2013; Grande et al. 2019 |
51 51
| [GRB2](GRB2) | 1 | Panea et al. 2019; Laura Pasqualucci, Trifonov, et al. 2011 |
52 52
| [GRHPR](GRHPR) | 1, aSHM | Arthur et al. 2018 |
53 53
| [HIST1H1B](HIST1H1B) | 1, aSHM | Chapuy et al. 2018; Krysiak et al. 2017 |
54
-| [HIST1H1C](HIST1H1C) | 1, aSHM | Morin et al. 2011; Panea et al. 2019 |
55
-| [HIST1H1D](HIST1H1D) | 1, aSHM | Krysiak et al. 2017; Morin et al. 2013 |
56
-| [HIST1H1E](HIST1H1E) | 1, aSHM | Morin et al. 2013; Grande et al. 2019; Krysiak et al. 2017 |
57
-| [HIST1H2AC](HIST1H2AC) | 1, aSHM | Morin et al. 2013; Krysiak et al. 2017 |
58
-| [HIST1H2AM](HIST1H2AM) | 1, aSHM | Panea et al. 2019; Krysiak et al. 2017 |
59
-| [HIST1H2BC](HIST1H2BC) | 1, aSHM | Reddy et al. 2017; Krysiak et al. 2017 |
54
+| [HIST1H1C](HIST1H1C) | 1, aSHM | Panea et al. 2019; Morin et al. 2011 |
55
+| [HIST1H1D](HIST1H1D) | 1, aSHM | Morin et al. 2013; Krysiak et al. 2017 |
56
+| [HIST1H1E](HIST1H1E) | 1, aSHM | Morin et al. 2013; Krysiak et al. 2017; Grande et al. 2019 |
57
+| [HIST1H2AC](HIST1H2AC) | 1, aSHM | Krysiak et al. 2017; Morin et al. 2013 |
58
+| [HIST1H2AM](HIST1H2AM) | 1, aSHM | Krysiak et al. 2017; Panea et al. 2019 |
59
+| [HIST1H2BC](HIST1H2BC) | 1, aSHM | Krysiak et al. 2017; Reddy et al. 2017 |
60 60
| [HIST1H2BK](HIST1H2BK) | 1, aSHM | Panea et al. 2019 |
61 61
| [HIST1H3B](HIST1H3B) | 1, aSHM | Zhang et al. 2013 |
62 62
| [HIST2H2BE](HIST2H2BE) | 1, aSHM | Schmitz et al. 2018 |
... ...
@@ -66,43 +66,43 @@
66 66
| [HLA-DMB](HLA-DMB) | 1 | |
67 67
| [HNRNPU](HNRNPU) | 1, aSHM | Reddy et al. 2017; Panea et al. 2019 |
68 68
| [HVCN1](HVCN1) | 1 | Krysiak et al. 2017 |
69
-| [IKZF3](IKZF3) | 1 | Morin et al. 2013; Panea et al. 2019 |
69
+| [IKZF3](IKZF3) | 1 | Panea et al. 2019; Morin et al. 2013 |
70 70
| [IL4R](IL4R) | 1, aSHM | Duns et al. 2021 |
71 71
| [IRF4](IRF4) | 1, aSHM | Morin et al. 2011 |
72
-| [IRF8](IRF8) | 1, aSHM | Panea et al. 2019; Morin et al. 2011 |
72
+| [IRF8](IRF8) | 1, aSHM | Morin et al. 2011; Panea et al. 2019 |
73 73
| [ITPKB](ITPKB) | 1, aSHM | Schmitz et al. 2018 |
74 74
| [KLF2](KLF2) | 1, aSHM | Laura Pasqualucci, Trifonov, et al. 2011 |
75 75
| [KLHL14](KLHL14) | 1 | Zhang et al. 2013 |
76
-| [KLHL6](KLHL6) | 1, aSHM | Morin et al. 2011; Panea et al. 2019 |
77
-| [KMT2C](KMT2C) | 1 | Zhou et al. 2019; Zhang et al. 2013; Zhang et al. 2014 |
76
+| [KLHL6](KLHL6) | 1, aSHM | Panea et al. 2019; Morin et al. 2011 |
77
+| [KMT2C](KMT2C) | 1 | Zhang et al. 2013; Zhang et al. 2014; Zhou et al. 2019 |
78 78
| [KMT2D](KMT2D) | 1 | Beà et al. 2013; Grande et al. 2019; Morin et al. 2011 |
79 79
| [KRAS](KRAS) | 1 | Lohr et al. 2012 |
80 80
| [LCOR](LCOR) | 1 | Arthur et al. 2018 |
81 81
| [LTB](LTB) | 1, aSHM | Panea et al. 2019; Chapuy et al. 2018 |
82
-| [MEF2B](MEF2B) | 1, aSHM | Morin et al. 2011; Beà et al. 2013 |
82
+| [MEF2B](MEF2B) | 1, aSHM | Beà et al. 2013; Morin et al. 2011 |
83 83
| [MEF2C](MEF2C) | 1, aSHM | Arthur et al. 2018 |
84 84
| [MGA](MGA) | 1 | Zhang et al. 2013 |
85 85
| [MPEG1](MPEG1) | 1 | Morin et al. 2013 |
86 86
| [MS4A1](MS4A1) | 1, aSHM | Rushton et al. 2020 |
87
-| [MTOR](MTOR) | 1 | Panea et al. 2019; Zhang et al. 2013 |
88
-| [MYC](MYC) | 1, aSHM | Johnston and Carroll 1992; L. Pasqualucci et al. 2001 |
87
+| [MTOR](MTOR) | 1 | Zhang et al. 2013; Panea et al. 2019 |
88
+| [MYC](MYC) | 1, aSHM | L. Pasqualucci et al. 2001; Johnston and Carroll 1992 |
89 89
| [MYD88](MYD88) | 1 | Ngo et al. 2011 |
90 90
| [NFKBIA](NFKBIA) | 1 | Russler-Germain et al. 2023; Lake et al. 2009 |
91 91
| [NFKBIE](NFKBIE) | 1 | Pararajalingam et al. 2020; Morin et al. 2016 |
92 92
| [NFKBIZ](NFKBIZ) | 1, noncoding | Morin et al. 2016 |
93 93
| [NOL9](NOL9) | 1, aSHM | Schmitz et al. 2018 |
94
-| [NOTCH1](NOTCH1) | 1 | Laura Pasqualucci, Trifonov, et al. 2011; Love et al. 2012; Beà et al. 2013 |
95
-| [NOTCH2](NOTCH2) | 1 | Panea et al. 2019; Beà et al. 2013; Trøen et al. 2008 |
94
+| [NOTCH1](NOTCH1) | 1 | Beà et al. 2013; Love et al. 2012; Laura Pasqualucci, Trifonov, et al. 2011 |
95
+| [NOTCH2](NOTCH2) | 1 | Trøen et al. 2008; Beà et al. 2013; Panea et al. 2019 |
96 96
| [OSBPL10](OSBPL10) | 1, aSHM | Arthur et al. 2018 |
97
-| [P2RY8](P2RY8) | 1 | Lohr et al. 2012; Muppidi et al. 2014 |
97
+| [P2RY8](P2RY8) | 1 | Muppidi et al. 2014; Lohr et al. 2012 |
98 98
| [PIM1](PIM1) | 1, aSHM | L. Pasqualucci et al. 2001; Burkhardt et al. 2022 |
99 99
| [PIM2](PIM2) | 1, aSHM | Arthur et al. 2018 |
100 100
| [POU2AF1](POU2AF1) | 1, aSHM | Krysiak et al. 2017 |
101
-| [POU2F2](POU2F2) | 1 | Zhang et al. 2013; Krysiak et al. 2017 |
101
+| [POU2F2](POU2F2) | 1 | Krysiak et al. 2017; Zhang et al. 2013 |
102 102
| [PRDM1](PRDM1) | 1 | Laura Pasqualucci et al. 2006 |
103 103
| [PTEN](PTEN) | 1 | Love et al. 2012 |
104 104
| [PTPRD](PTPRD) | 1 | |
105
-| [RB1](RB1) | 1 | Zhang et al. 2014; Morin et al. 2013 |
105
+| [RB1](RB1) | 1 | Morin et al. 2013; Zhang et al. 2014 |
106 106
| [RFX7](RFX7) | 1 | Grande et al. 2019 |
107 107
| [RHOA](RHOA) | 1 | Richter et al. 2012 |
108 108
| [RRAGC](RRAGC) | 1 | Okosun et al. 2016 |
... ...
@@ -111,20 +111,20 @@
111 111
| [SF3B1](SF3B1) | 1 | Love et al. 2012 |
112 112
| [SGK1](SGK1) | 1, aSHM | Morin et al. 2011 |
113 113
| [SIN3A](SIN3A) | 1 | Grande et al. 2019 |
114
-| [SMARCA4](SMARCA4) | 1 | Zhang et al. 2013; Richter et al. 2012; Krysiak et al. 2017; Nadeu et al. 2020 |
114
+| [SMARCA4](SMARCA4) | 1 | Richter et al. 2012; Nadeu et al. 2020; Krysiak et al. 2017; Zhang et al. 2013 |
115 115
| [SOCS1](SOCS1) | 1, aSHM | Morin et al. 2011 |
116 116
| [SPEN](SPEN) | 1 | Rossi et al. 2012 |
117 117
| [STAT3](STAT3) | 1 | Ohgami et al. 2014 |
118 118
| [STAT6](STAT6) | 1 | Yildiz et al. 2015 |
119 119
| [TAF1](TAF1) | 1 | Morin et al. 2013 |
120 120
| [TBL1XR1](TBL1XR1) | 1 | Mareschal et al. 2016 |
121
-| [TET2](TET2) | 1 | Albuquerque et al. 2017; Panea et al. 2019 |
121
+| [TET2](TET2) | 1 | Panea et al. 2019; Albuquerque et al. 2017 |
122 122
| [TMEM30A](TMEM30A) | 1 | Morin et al. 2011 |
123 123
| [TMSB4X](TMSB4X) | 1, aSHM | Albuquerque et al. 2017 |
124 124
| [TNFAIP3](TNFAIP3) | 1 | Compagno et al. 2009 |
125 125
| [TNFRSF14](TNFRSF14) | 1 | Cheung et al. 2010 |
126 126
| [TOX](TOX) | 1 | Reddy et al. 2017 |
127
-| [TP53](TP53) | 1 | Beà et al. 2013; Wilda et al. 2004; Morin et al. 2011 |
127
+| [TP53](TP53) | 1 | Morin et al. 2011; Beà et al. 2013; Wilda et al. 2004 |
128 128
| [TRRAP](TRRAP) | 1 | Parry et al. 2013 |
129 129
| [UBE2A](UBE2A) | 1 | Reddy et al. 2017 |
130 130
| [UNC5C](UNC5C) | 1 | |
... ...
@@ -133,7 +133,7 @@
133 133
| [WEE1](WEE1) | 1 | Schmitz et al. 2018 |
134 134
| [XPO1](XPO1) | 1 | Mareschal et al. 2016 |
135 135
| [ZC3H12A](ZC3H12A) | 1 | Arthur et al. 2018 |
136
-| [ZFP36L1](ZFP36L1) | 1, aSHM | Morin et al. 2011; Panea et al. 2019 |
136
+| [ZFP36L1](ZFP36L1) | 1, aSHM | Panea et al. 2019; Morin et al. 2011 |
137 137
| [ZNF292](ZNF292) | 1 | Zhang et al. 2013 |
138 138
| [ZNF608](ZNF608) | 1, aSHM | Zhang et al. 2013; Krysiak et al. 2017 |
139 139
... ...
@@ -154,7 +154,7 @@
154 154
| [BCL11A](BCL11A) | 2, aSHM | |
155 155
| [BCOR](BCOR) | 2 | Nadeu et al. 2020 |
156 156
| [BCR](BCR) | 2, aSHM | |
157
-| [BIRC3](BIRC3) | 2, aSHM | Arthur et al. 2018; Beà et al. 2013 |
157
+| [BIRC3](BIRC3) | 2, aSHM | Beà et al. 2013; Arthur et al. 2018 |
158 158
| [BLK](BLK) | 2, aSHM | |
159 159
| [BRINP3](BRINP3) | 2 | Reddy et al. 2017 |
160 160
| [BTBD3](BTBD3) | 2 | Reddy et al. 2017 |
... ...
@@ -206,14 +206,14 @@
206 206
| [GPC5](GPC5) | 2 | Schmitz et al. 2018 |
207 207
| [GSG2](GSG2) | 2 | Schmitz et al. 2018 |
208 208
| [HDAC7](HDAC7) | 2 | Morin et al. 2013 |
209
-| [HIST1H2AG](HIST1H2AG) | 2 | Krysiak et al. 2017; Panea et al. 2019; Morin et al. 2013 |
209
+| [HIST1H2AG](HIST1H2AG) | 2, aSHM | Morin et al. 2013; Krysiak et al. 2017; Panea et al. 2019 |
210 210
| [HLA-DMA](HLA-DMA) | 2 | |
211 211
| [HLA-DQA1](HLA-DQA1) | 2 | Hübschmann et al. 2021 |
212 212
| [HNF1B](HNF1B) | 2 | Laura Pasqualucci, Trifonov, et al. 2011 |
213 213
| [HNRNPD](HNRNPD) | 2 | |
214 214
| [HNRNPH1](HNRNPH1) | 2, noncoding | Pararajalingam et al. 2020 |
215 215
| [HRAS](HRAS) | 2 | Reddy et al. 2017 |
216
-| [ID3](ID3) | 2 | Richter et al. 2012; Schmitz et al. 2012 |
216
+| [ID3](ID3) | 2 | Schmitz et al. 2012; Richter et al. 2012 |
217 217
| [IER2](IER2) | 2 | Morin et al. 2013 |
218 218
| [IFNGR1](IFNGR1) | 2 | Morin et al. 2013 |
219 219
| [IGLL5](IGLL5) | 2, aSHM | Panea et al. 2019; Russler-Germain et al. 2023 |
... ...
@@ -275,8 +275,8 @@
275 275
| [PCDHB11](PCDHB11) | 2 | Morin et al. 2013 |
276 276
| [PCLO](PCLO) | 2 | Lohr et al. 2012 |
277 277
| [PDE4DIP](PDE4DIP) | 2 | Chapuy et al. 2018 |
278
-| [PDS5B](PDS5B) | 2 | Hübschmann et al. 2021; Morin et al. 2013 |
279
-| [PHF6](PHF6) | 2 | Thomas et al. 2023; Reddy et al. 2017 |
278
+| [PDS5B](PDS5B) | 2 | Morin et al. 2013; Hübschmann et al. 2021 |
279
+| [PHF6](PHF6) | 2 | Reddy et al. 2017; Thomas et al. 2023 |
280 280
| [PIK3CD](PIK3CD) | 2 | Reddy et al. 2017 |
281 281
| [PIK3R1](PIK3R1) | 2 | Zhang et al. 2013; Panea et al. 2019 |
282 282
| [PKD1](PKD1) | 2 | Morin et al. 2013 |
... ...
@@ -284,14 +284,14 @@
284 284
| [POGZ](POGZ) | 2 | Morin et al. 2013 |
285 285
| [PPP1R9B](PPP1R9B) | 2 | |
286 286
| [PRKCB](PRKCB) | 2 | Morin et al. 2013 |
287
-| [PRKDC](PRKDC) | 2 | Hübschmann et al. 2021; Schmitz et al. 2018 |
287
+| [PRKDC](PRKDC) | 2 | Schmitz et al. 2018; Hübschmann et al. 2021 |
288 288
| [PRPS1](PRPS1) | 2 | Chapuy et al. 2018 |
289 289
| [PTMA](PTMA) | 2, aSHM | |
290 290
| [PTPN1](PTPN1) | 2, aSHM | |
291 291
| [PTPN23](PTPN23) | 2 | Morin et al. 2013 |
292 292
| [PTPN6](PTPN6) | 2 | Reddy et al. 2017 |
293 293
| [PTPRK](PTPRK) | 2 | Reddy et al. 2017 |
294
-| [RAC2](RAC2) | 2 | Panea et al. 2019; Hübschmann et al. 2021 |
294
+| [RAC2](RAC2) | 2 | Hübschmann et al. 2021; Panea et al. 2019 |
295 295
| [RAD9A](RAD9A) | 2 | Chapuy et al. 2018 |
296 296
| [RARA](RARA) | 2 | Reddy et al. 2017 |
297 297
| [RCC](RCC) | 2, aSHM | |
... ...
@@ -311,7 +311,7 @@
311 311
| [SIAH2](SIAH2) | 2 | Hübschmann et al. 2021 |
312 312
| [SLC34A2](SLC34A2) | 2 | Hübschmann et al. 2021 |
313 313
| [SMEK1](SMEK1) | 2 | Chapuy et al. 2018 |
314
-| [SRRM2](SRRM2) | 2 | Russler-Germain et al. 2023; Morin et al. 2013 |
314
+| [SRRM2](SRRM2) | 2 | Morin et al. 2013; Russler-Germain et al. 2023 |
315 315
| [ST6GAL1](ST6GAL1) | 2, aSHM | Arthur et al. 2018 |
316 316
| [STAT5B](STAT5B) | 2 | Zhang et al. 2013 |
317 317
| [SYK](SYK) | 2 | Reddy et al. 2017 |
... ...
@@ -321,20 +321,20 @@
321 321
| [TCL1A](TCL1A) | 2, aSHM | Grande et al. 2019 |
322 322
| [TGFBR2](TGFBR2) | 2 | Reddy et al. 2017 |
323 323
| [TIPARP](TIPARP) | 2 | Reddy et al. 2017 |
324
-| [TLR2](TLR2) | 2 | Beà et al. 2013; Chapuy et al. 2018 |
324
+| [TLR2](TLR2) | 2 | Chapuy et al. 2018; Beà et al. 2013 |
325 325
| [TRAF3](TRAF3) | 2 | Laura Pasqualucci, Trifonov, et al. 2011 |
326 326
| [TRAF6](TRAF6) | 2 | Hübschmann et al. 2021 |
327 327
| [TRIP12](TRIP12) | 2 | |
328 328
| [UBE2J1](UBE2J1) | 2, aSHM | |
329
-| [UBR5](UBR5) | 2 | Zhang et al. 2013; Pararajalingam et al. 2020 |
329
+| [UBR5](UBR5) | 2 | Pararajalingam et al. 2020; Zhang et al. 2013 |
330 330
| [UNC5B](UNC5B) | 2 | Hübschmann et al. 2021 |
331 331
| [UNC5D](UNC5D) | 2 | |
332 332
| [WAC](WAC) | 2 | Reddy et al. 2017 |
333 333
| [WDFY3](WDFY3) | 2 | Morin et al. 2013 |
334
-| [WNK1](WNK1) | 2 | Hübschmann et al. 2021; Thomas et al. 2023 |
334
+| [WNK1](WNK1) | 2 | Thomas et al. 2023; Hübschmann et al. 2021 |
335 335
| [XBP1](XBP1) | 2, aSHM | |
336 336
| [YY1](YY1) | 2 | Reddy et al. 2017 |
337
-| [ZBTB7A](ZBTB7A) | 2 | Burkhardt et al. 2022; Reddy et al. 2017 |
337
+| [ZBTB7A](ZBTB7A) | 2 | Reddy et al. 2017; Burkhardt et al. 2022 |
338 338
| [ZCCHC7](ZCCHC7) | 2, aSHM | Arthur et al. 2018 |
339 339
| [ZEB2](ZEB2) | 2 | Zhang et al. 2013 |
340 340
| [ZFAT](ZFAT) | 2 | Reddy et al. 2017 |
FL_genes.md
... ...
@@ -9,27 +9,27 @@
9 9
| Gene | Tier | Relevant references |
10 10
|:----------------------:|:-------:|:---------------------------------------------------------------------------------|
11 11
| [ACTB](ACTB) | 1, aSHM | Lohr et al. 2012 |
12
-| [ARID1A](ARID1A) | 1 | Zhang et al. 2013; Krysiak et al. 2017; Love et al. 2012 |
12
+| [ARID1A](ARID1A) | 1 | Krysiak et al. 2017; Zhang et al. 2013; Love et al. 2012 |
13 13
| [ATP6AP1](ATP6AP1) | 1 | Okosun et al. 2016 |
14 14
| [ATP6V1B2](ATP6V1B2) | 1 | Okosun et al. 2016 |
15 15
| [B2M](B2M) | 1 | Morin et al. 2011; Pararajalingam et al. 2020 |
16
-| [BCL2](BCL2) | 1, aSHM | Morin et al. 2011; Tanaka et al. 1992; Burkhardt et al. 2022 |
17
-| [BCL6](BCL6) | 1, aSHM | Love et al. 2012; Morin et al. 2011 |
18
-| [BCL7A](BCL7A) | 1, aSHM | Grande et al. 2019; Krysiak et al. 2017; Arthur et al. 2018 |
16
+| [BCL2](BCL2) | 1, aSHM | Morin et al. 2011; Burkhardt et al. 2022; Tanaka et al. 1992 |
17
+| [BCL6](BCL6) | 1, aSHM | Morin et al. 2011; Love et al. 2012 |
18
+| [BCL7A](BCL7A) | 1, aSHM | Krysiak et al. 2017; Arthur et al. 2018; Grande et al. 2019 |
19 19
| [BIRC6](BIRC6) | 1 | Reddy et al. 2017 |
20
-| [BTG1](BTG1) | 1, aSHM | Burkhardt et al. 2022; Morin et al. 2011 |
21
-| [BTG2](BTG2) | 1, aSHM | Love et al. 2012; Morin et al. 2011 |
22
-| [BTK](BTK) | 1 | Albuquerque et al. 2017; Krysiak et al. 2017 |
23
-| [CARD11](CARD11) | 1 | Lenz et al. 2008; Panea et al. 2019; Morin et al. 2011; Wu et al. 2016 |
20
+| [BTG1](BTG1) | 1, aSHM | Morin et al. 2011; Burkhardt et al. 2022 |
21
+| [BTG2](BTG2) | 1, aSHM | Morin et al. 2011; Love et al. 2012 |
22
+| [BTK](BTK) | 1 | Krysiak et al. 2017; Albuquerque et al. 2017 |
23
+| [CARD11](CARD11) | 1 | Morin et al. 2011; Lenz et al. 2008; Panea et al. 2019; Wu et al. 2016 |
24 24
| [CCND3](CCND3) | 1 | Richter et al. 2012; Morin et al. 2011 |
25
-| [CD83](CD83) | 1, aSHM | Morin et al. 2013; Panea et al. 2019; Russler-Germain et al. 2023 |
25
+| [CD83](CD83) | 1, aSHM | Russler-Germain et al. 2023; Panea et al. 2019; Morin et al. 2013 |
26 26
| [CREBBP](CREBBP) | 1 | Love et al. 2012; Laura Pasqualucci, Dominguez-Sola, et al. 2011 |
27 27
| [CTSS](CTSS) | 1 | Bararia et al. 2020 |
28
-| [DTX1](DTX1) | 1, aSHM | Schmitz et al. 2018; Panea et al. 2019 |
29
-| [EBF1](EBF1) | 1, aSHM | Bohle et al. 2013; Thomas et al. 2023 |
28
+| [DTX1](DTX1) | 1, aSHM | Panea et al. 2019; Schmitz et al. 2018 |
29
+| [EBF1](EBF1) | 1, aSHM | Thomas et al. 2023; Bohle et al. 2013 |
30 30
| [EEF1A1](EEF1A1) | 1 | Hübschmann et al. 2021 |
31 31
| [EP300](EP300) | 1 | Laura Pasqualucci, Dominguez-Sola, et al. 2011; Panea et al. 2019 |
32
-| [EZH2](EZH2) | 1 | Morin et al. 2010; Love et al. 2012 |
32
+| [EZH2](EZH2) | 1 | Love et al. 2012; Morin et al. 2010 |
33 33
| [FAS](FAS) | 1 | Scholl et al. 2007 |
34 34
| [FOXO1](FOXO1) | 1 | Morin et al. 2011; Schmitz et al. 2012 |
35 35
| [GNA13](GNA13) | 1 | Morin et al. 2011; Love et al. 2012 |
... ...
@@ -38,9 +38,9 @@
38 38
| [HIST1H1C](HIST1H1C) | 1, aSHM | Morin et al. 2011; Panea et al. 2019 |
39 39
| [HIST1H1D](HIST1H1D) | 1, aSHM | Morin et al. 2013; Krysiak et al. 2017 |
40 40
| [HIST1H1E](HIST1H1E) | 1, aSHM | Grande et al. 2019; Krysiak et al. 2017; Morin et al. 2013 |
41
-| [HIST1H2AC](HIST1H2AC) | 1, aSHM | Morin et al. 2013; Krysiak et al. 2017 |
42
-| [HIST1H2AG](HIST1H2AG) | 1, aSHM | Morin et al. 2013; Panea et al. 2019; Krysiak et al. 2017 |
43
-| [HIST1H2AM](HIST1H2AM) | 1, aSHM | Krysiak et al. 2017; Panea et al. 2019 |
41
+| [HIST1H2AC](HIST1H2AC) | 1, aSHM | Krysiak et al. 2017; Morin et al. 2013 |
42
+| [HIST1H2AG](HIST1H2AG) | 1, aSHM | Panea et al. 2019; Krysiak et al. 2017; Morin et al. 2013 |
43
+| [HIST1H2AM](HIST1H2AM) | 1, aSHM | Panea et al. 2019; Krysiak et al. 2017 |
44 44
| [HIST1H2BC](HIST1H2BC) | 1, aSHM | Krysiak et al. 2017; Reddy et al. 2017 |
45 45
| [HIST1H2BD](HIST1H2BD) | 1, aSHM | Krysiak et al. 2017 |
46 46
| [HIST1H2BG](HIST1H2BG) | 1, aSHM | Krysiak et al. 2017 |
... ...
@@ -48,31 +48,31 @@
48 48
| [HIST1H3G](HIST1H3G) | 1, aSHM | Krysiak et al. 2017 |
49 49
| [HVCN1](HVCN1) | 1 | Krysiak et al. 2017 |
50 50
| [IRF4](IRF4) | 1, aSHM | Morin et al. 2011 |
51
-| [IRF8](IRF8) | 1, aSHM | Morin et al. 2011; Panea et al. 2019 |
51
+| [IRF8](IRF8) | 1, aSHM | Panea et al. 2019; Morin et al. 2011 |
52 52
| [ITPKB](ITPKB) | 1, aSHM | Schmitz et al. 2018 |
53 53
| [KLF2](KLF2) | 1, aSHM | Laura Pasqualucci, Trifonov, et al. 2011 |
54 54
| [KLHL6](KLHL6) | 1, aSHM | Morin et al. 2011; Panea et al. 2019 |
55
-| [KMT2D](KMT2D) | 1 | Beà et al. 2013; Grande et al. 2019; Morin et al. 2011 |
55
+| [KMT2D](KMT2D) | 1 | Grande et al. 2019; Beà et al. 2013; Morin et al. 2011 |
56 56
| [LTB](LTB) | 1, aSHM | Panea et al. 2019; Chapuy et al. 2018 |
57 57
| [MAP2K1](MAP2K1) | 1 | Shin et al. 2015; Louissaint et al. 2016 |
58
-| [MEF2B](MEF2B) | 1, aSHM | Beà et al. 2013; Morin et al. 2011 |
58
+| [MEF2B](MEF2B) | 1, aSHM | Morin et al. 2011; Beà et al. 2013 |
59 59
| [MEF2C](MEF2C) | 1, aSHM | Arthur et al. 2018 |
60 60
| [PCLO](PCLO) | 1 | Lohr et al. 2012 |
61 61
| [PIM1](PIM1) | 1, aSHM | Burkhardt et al. 2022; L. Pasqualucci et al. 2001 |
62 62
| [POU2AF1](POU2AF1) | 1 | Krysiak et al. 2017 |
63
-| [POU2F2](POU2F2) | 1 | Zhang et al. 2013; Krysiak et al. 2017 |
63
+| [POU2F2](POU2F2) | 1 | Krysiak et al. 2017; Zhang et al. 2013 |
64 64
| [PTPRD](PTPRD) | 1 | |
65 65
| [RRAGC](RRAGC) | 1 | Okosun et al. 2016 |
66
-| [S1PR2](S1PR2) | 1, aSHM | Muppidi et al. 2014; Morin et al. 2011 |
66
+| [S1PR2](S1PR2) | 1, aSHM | Morin et al. 2011; Muppidi et al. 2014 |
67 67
| [SGK1](SGK1) | 1, aSHM | Morin et al. 2011 |
68
-| [SMARCA4](SMARCA4) | 1 | Richter et al. 2012; Nadeu et al. 2020; Krysiak et al. 2017; Zhang et al. 2013 |
68
+| [SMARCA4](SMARCA4) | 1 | Krysiak et al. 2017; Zhang et al. 2013; Nadeu et al. 2020; Richter et al. 2012 |
69 69
| [SOCS1](SOCS1) | 1, aSHM | Morin et al. 2011 |
70 70
| [STAT6](STAT6) | 1 | Yildiz et al. 2015 |
71 71
| [TBL1XR1](TBL1XR1) | 1 | Mareschal et al. 2016 |
72 72
| [TMSB4X](TMSB4X) | 1, aSHM | Albuquerque et al. 2017 |
73 73
| [TNFAIP3](TNFAIP3) | 1 | Compagno et al. 2009 |
74 74
| [TNFRSF14](TNFRSF14) | 1 | Cheung et al. 2010 |
75
-| [TP53](TP53) | 1 | Morin et al. 2011; Beà et al. 2013; Wilda et al. 2004 |
75
+| [TP53](TP53) | 1 | Wilda et al. 2004; Beà et al. 2013; Morin et al. 2011 |
76 76
| [VMA21](VMA21) | 1 | Hübschmann et al. 2021 |
77 77
78 78
## Tier 2 FL genes
... ...
@@ -84,13 +84,13 @@
84 84
| [ABL2](ABL2) | 2 | Russler-Germain et al. 2023 |
85 85
| [ACTG1](ACTG1) | 2, aSHM | Hübschmann et al. 2021 |
86 86
| [ATP6V1A](ATP6V1A) | 2 | Hübschmann et al. 2021 |
87
-| [BCL10](BCL10) | 2 | Morin et al. 2011; Russler-Germain et al. 2023 |
87
+| [BCL10](BCL10) | 2 | Russler-Germain et al. 2023; Morin et al. 2011 |
88 88
| [CCDC42BPB](CCDC42BPB) | 2 | Hübschmann et al. 2021 |
89 89
| [CD70](CD70) | 2 | Morin et al. 2011; Russler-Germain et al. 2023 |
90 90
| [CD79B](CD79B) | 2 | Panea et al. 2019; Morin et al. 2011 |
91 91
| [CILP](CILP) | 2 | Russler-Germain et al. 2023 |
92 92
| [CPNE8](CPNE8) | 2 | Hübschmann et al. 2021 |
93
-| [CXCR4](CXCR4) | 2, aSHM | Panea et al. 2019; Krysiak et al. 2017; Khodabakhshi et al. 2012 |
93
+| [CXCR4](CXCR4) | 2, aSHM | Khodabakhshi et al. 2012; Panea et al. 2019; Krysiak et al. 2017 |
94 94
| [CYP2A6](CYP2A6) | 2 | Russler-Germain et al. 2023 |
95 95
| [DDX3X](DDX3X) | 2 | Schmitz et al. 2012, 2018 |
96 96
| [DHX15](DHX15) | 2 | Hübschmann et al. 2021 |
... ...
@@ -110,14 +110,14 @@
110 110
| [MAGEC1](MAGEC1) | 2 | Russler-Germain et al. 2023 |
111 111
| [MAP7D1](MAP7D1) | 2 | Russler-Germain et al. 2023 |
112 112
| [MGEA5](MGEA5) | 2 | Hübschmann et al. 2021 |
113
-| [MKI67](MKI67) | 2 | Russler-Germain et al. 2023; Schmitz et al. 2012 |
114
-| [MYC](MYC) | 2, aSHM | L. Pasqualucci et al. 2001; Johnston and Carroll 1992 |
113
+| [MKI67](MKI67) | 2 | Schmitz et al. 2012; Russler-Germain et al. 2023 |
114
+| [MYC](MYC) | 2, aSHM | Johnston and Carroll 1992; L. Pasqualucci et al. 2001 |
115 115
| [MYCBP2](MYCBP2) | 2 | Hübschmann et al. 2021 |
116 116
| [MYD88](MYD88) | 2 | Ngo et al. 2011 |
117
-| [NFKBIA](NFKBIA) | 2 | Russler-Germain et al. 2023; Lake et al. 2009 |
117
+| [NFKBIA](NFKBIA) | 2 | Lake et al. 2009; Russler-Germain et al. 2023 |
118 118
| [OR8H2](OR8H2) | 2 | Russler-Germain et al. 2023 |
119
-| [P2RY8](P2RY8) | 2 | Muppidi et al. 2014; Lohr et al. 2012 |
120
-| [PDS5B](PDS5B) | 2 | Morin et al. 2013; Hübschmann et al. 2021 |
119
+| [P2RY8](P2RY8) | 2 | Lohr et al. 2012; Muppidi et al. 2014 |
120
+| [PDS5B](PDS5B) | 2 | Hübschmann et al. 2021; Morin et al. 2013 |
121 121
| [PPP4C](PPP4C) | 2 | Hübschmann et al. 2021 |
122 122
| [PRKDC](PRKDC) | 2 | Hübschmann et al. 2021; Schmitz et al. 2018 |
123 123
| [PZP](PZP) | 2 | Russler-Germain et al. 2023 |
... ...
@@ -130,7 +130,7 @@
130 130
| [TPP1](TPP1) | 2 | Hübschmann et al. 2021 |
131 131
| [XIRP2](XIRP2) | 2 | Russler-Germain et al. 2023 |
132 132
| [ZC3H12A](ZC3H12A) | 2 | Arthur et al. 2018 |
133
-| [ZNF608](ZNF608) | 2 | Zhang et al. 2013; Krysiak et al. 2017 |
133
+| [ZNF608](ZNF608) | 2 | Krysiak et al. 2017; Zhang et al. 2013 |
134 134
135 135
# References
136 136
MCL_genes.md
... ...
@@ -10,7 +10,7 @@
10 10
|:------------------:|:------------:|:---------------------------------------------------------------------------------|
11 11
| [ATM](ATM) | 1 | Reddy et al. 2017; Beà et al. 2013 |
12 12
| [BIRC3](BIRC3) | 1 | Arthur et al. 2018; Beà et al. 2013 |
13
-| [CARD11](CARD11) | 1 | Lenz et al. 2008; Panea et al. 2019; Morin et al. 2011; Wu et al. 2016 |
13
+| [CARD11](CARD11) | 1 | Morin et al. 2011; Wu et al. 2016; Panea et al. 2019; Lenz et al. 2008 |
14 14
| [CCND1](CCND1) | 1, aSHM | Beà et al. 2013 |
15 15
| [DAZAP1](DAZAP1) | 1 | Pararajalingam et al. 2020 |
16 16
| [EWSR1](EWSR1) | 1 | Pararajalingam et al. 2020 |
... ...
@@ -18,19 +18,19 @@
18 18
| [KMT2D](KMT2D) | 1 | Morin et al. 2011; Beà et al. 2013; Grande et al. 2019 |
19 19
| [MEF2B](MEF2B) | 1 | Beà et al. 2013; Morin et al. 2011 |
20 20
| [NFKBIE](NFKBIE) | 1 | Morin et al. 2016; Pararajalingam et al. 2020 |
21
-| [NOTCH1](NOTCH1) | 1 | Beà et al. 2013; Love et al. 2012; Pasqualucci et al. 2011 |
22
-| [NOTCH2](NOTCH2) | 1 | Beà et al. 2013; Panea et al. 2019; Trøen et al. 2008 |
21
+| [NOTCH1](NOTCH1) | 1 | Pasqualucci et al. 2011; Love et al. 2012; Beà et al. 2013 |
22
+| [NOTCH2](NOTCH2) | 1 | Panea et al. 2019; Beà et al. 2013; Trøen et al. 2008 |
23 23
| [NSD2](NSD2) | 1 | Beà et al. 2013 |
24 24
| [POT1](POT1) | 1 | Zhang et al. 2014 |
25 25
| [RB1](RB1) | 1 | Morin et al. 2013; Zhang et al. 2014 |
26 26
| [S1PR1](S1PR1) | 1 | Pararajalingam et al. 2020 |
27
-| [SMARCA4](SMARCA4) | 1 | Richter et al. 2012; Nadeu et al. 2020; Krysiak et al. 2017; Zhang et al. 2013 |
27
+| [SMARCA4](SMARCA4) | 1 | Richter et al. 2012; Krysiak et al. 2017; Zhang et al. 2013; Nadeu et al. 2020 |
28 28
| [SP140](SP140) | 1 | Beà et al. 2013 |
29 29
| [SYNE1](SYNE1) | 1 | Nadeu et al. 2020 |
30 30
| [TERT](TERT) | 1, noncoding | Nadeu et al. 2020 |
31
-| [TLR2](TLR2) | 1 | Beà et al. 2013; Chapuy et al. 2018 |
32
-| [TP53](TP53) | 1 | Wilda et al. 2004; Beà et al. 2013; Morin et al. 2011 |
33
-| [UBR5](UBR5) | 1 | Pararajalingam et al. 2020; Zhang et al. 2013 |
31
+| [TLR2](TLR2) | 1 | Chapuy et al. 2018; Beà et al. 2013 |
32
+| [TP53](TP53) | 1 | Beà et al. 2013; Wilda et al. 2004; Morin et al. 2011 |
33
+| [UBR5](UBR5) | 1 | Zhang et al. 2013; Pararajalingam et al. 2020 |
34 34
35 35
## Tier 2 MCL genes
36 36
... ...
@@ -43,7 +43,7 @@
43 43
| [ANK2](ANK2) | 2 | Zhang et al. 2014 |
44 44
| [ARID1B](ARID1B) | 2 | Reddy et al. 2017 |
45 45
| [ATP11C](ATP11C) | 2 | Zhang et al. 2014 |
46
-| [B2M](B2M) | 2 | Morin et al. 2011; Pararajalingam et al. 2020 |
46
+| [B2M](B2M) | 2 | Pararajalingam et al. 2020; Morin et al. 2011 |
47 47
| [BCOR](BCOR) | 2 | Nadeu et al. 2020 |
48 48
| [CDH8](CDH8) | 2 | Zhang et al. 2014 |
49 49
| [CHMP4C](CHMP4C) | 2 | Beà et al. 2013 |
... ...
@@ -58,12 +58,12 @@
58 58
| [DNAJC6](DNAJC6) | 2 | Beà et al. 2013 |
59 59
| [EIF2AK4](EIF2AK4) | 2 | Zhang et al. 2014 |
60 60
| [ESX1](ESX1) | 2 | Zhang et al. 2014 |
61
-| [FAT4](FAT4) | 2 | Zhang et al. 2014; Morin et al. 2013 |
61
+| [FAT4](FAT4) | 2 | Morin et al. 2013; Zhang et al. 2014 |
62 62
| [GRIN2A](GRIN2A) | 2 | Zhang et al. 2014 |
63 63
| [HEPH](HEPH) | 2 | Zhang et al. 2014 |
64 64
| [KCNC2](KCNC2) | 2 | Beà et al. 2013 |
65 65
| [KIAA1671](KIAA1671) | 2 | Beà et al. 2013 |
66
-| [KMT2C](KMT2C) | 2 | Zhang et al. 2014; Zhou et al. 2019; Zhang et al. 2013 |
66
+| [KMT2C](KMT2C) | 2 | Zhang et al. 2013; Zhang et al. 2014; Zhou et al. 2019 |
67 67
| [LUZP4](LUZP4) | 2 | Beà et al. 2013 |
68 68
| [MRGPRF](MRGPRF) | 2 | Zhang et al. 2014 |
69 69
| [NIN](NIN) | 2 | Zhang et al. 2014 |
... ...
@@ -74,7 +74,7 @@
74 74
| [PLXNB3](PLXNB3) | 2 | Zhang et al. 2014 |
75 75
| [RGS4](RGS4) | 2 | Beà et al. 2013 |
76 76
| [ROBO2](ROBO2) | 2 | Zhang et al. 2014 |
77
-| [SALL3](SALL3) | 2 | Zhang et al. 2014; Love et al. 2012 |
77
+| [SALL3](SALL3) | 2 | Love et al. 2012; Zhang et al. 2014 |
78 78
| [SI](SI) | 2 | Zhang et al. 2014 |
79 79
| [SLC17A6](SLC17A6) | 2 | Beà et al. 2013 |
80 80
| [SMARCB1](SMARCB1) | 2 | Nadeu et al. 2020 |