papers/abateDistinctViralMutational2015a.md
... ...
@@ -15,17 +15,20 @@ config:
15 15
sankey:
16 16
showValues: true
17 17
linkColor: target
18
- width: 300
18
+ width: 600
19 19
height: 300
20 20
nodeAlignment: right
21 21
prefix: '('
22 22
suffix: ' genes)'
23 23
---
24 24
sankey-beta
25
-This study, BL Tier 1,
25
+This study, New Tier 1,
26
+New Tier 1, BL Tier 1,
26 27
This study, BL Tier 2, 1
27
-Other BL studies, BL Tier 1, 29
28
-Other BL studies, BL Tier 2, 157
28
+This study, New Tier 2, 1
29
+New Tier 2, BL Tier 2, 1
30
+Other studies, BL Tier 1, 29
31
+Other studies, BL Tier 2, 157
29 32
```
30 33
31 34
papers/albuquerqueEnhancingKnowledgeDiscovery2017a.md
... ...
@@ -27,8 +27,8 @@ New Tier 1, DLBCL Tier 1, 3
27 27
This study, DLBCL Tier 2,
28 28
This study, New Tier 2,
29 29
New Tier 2, DLBCL Tier 2,
30
-Other DLBCL studies, DLBCL Tier 1, 128
31
-Other DLBCL studies, DLBCL Tier 2, 198
30
+Other studies, DLBCL Tier 1, 128
31
+Other studies, DLBCL Tier 2, 198
32 32
```
33 33
34 34
papers/arthurGenomewideDiscoverySomatic2018.md
... ...
@@ -15,17 +15,20 @@ config:
15 15
sankey:
16 16
showValues: true
17 17
linkColor: target
18
- width: 300
18
+ width: 600
19 19
height: 300
20 20
nodeAlignment: right
21 21
prefix: '('
22 22
suffix: ' genes)'
23 23
---
24 24
sankey-beta
25
-This study, DLBCL Tier 1, 8
25
+This study, New Tier 1, 8
26
+New Tier 1, DLBCL Tier 1, 8
26 27
This study, DLBCL Tier 2, 12
27
-Other DLBCL studies, DLBCL Tier 1, 128
28
-Other DLBCL studies, DLBCL Tier 2, 198
28
+This study, New Tier 2, 12
29
+New Tier 2, DLBCL Tier 2, 12
30
+Other studies, DLBCL Tier 1, 128
31
+Other studies, DLBCL Tier 2, 198
29 32
```
30 33
31 34
papers/barariaCathepsinAlterationsInduce2020c.md
... ...
@@ -15,17 +15,20 @@ config:
15 15
sankey:
16 16
showValues: true
17 17
linkColor: target
18
- width: 300
18
+ width: 600
19 19
height: 300
20 20
nodeAlignment: right
21 21
prefix: '('
22 22
suffix: ' genes)'
23 23
---
24 24
sankey-beta
25
-This study, FL Tier 1, 1
25
+This study, New Tier 1, 1
26
+New Tier 1, FL Tier 1, 1
26 27
This study, FL Tier 2,
27
-Other FL studies, FL Tier 1, 66
28
-Other FL studies, FL Tier 2, 50
28
+This study, New Tier 2,
29
+New Tier 2, FL Tier 2,
30
+Other studies, FL Tier 1, 66
31
+Other studies, FL Tier 2, 50
29 32
```
30 33
31 34
papers/beaLandscapeSomaticMutations2013.md
... ...
@@ -15,17 +15,20 @@ config:
15 15
sankey:
16 16
showValues: true
17 17
linkColor: target
18
- width: 300
18
+ width: 600
19 19
height: 300
20 20
nodeAlignment: right
21 21
prefix: '('
22 22
suffix: ' genes)'
23 23
---
24 24
sankey-beta
25
-This study, MCL Tier 1, 11
25
+This study, New Tier 1, 11
26
+New Tier 1, MCL Tier 1, 11
26 27
This study, MCL Tier 2, 16
27
-Other MCL studies, MCL Tier 1, 23
28
-Other MCL studies, MCL Tier 2, 46
28
+This study, New Tier 2, 16
29
+New Tier 2, MCL Tier 2, 16
30
+Other studies, MCL Tier 1, 23
31
+Other studies, MCL Tier 2, 46
29 32
```
30 33
31 34
papers/bohleRoleEarlyBcell2013.md
... ...
@@ -15,17 +15,20 @@ config:
15 15
sankey:
16 16
showValues: true
17 17
linkColor: target
18
- width: 300
18
+ width: 600
19 19
height: 300
20 20
nodeAlignment: right
21 21
prefix: '('
22 22
suffix: ' genes)'
23 23
---
24 24
sankey-beta
25
-This study, DLBCL Tier 1, 1
25
+This study, New Tier 1, 1
26
+New Tier 1, DLBCL Tier 1, 1
26 27
This study, DLBCL Tier 2,
27
-Other DLBCL studies, DLBCL Tier 1, 128
28
-Other DLBCL studies, DLBCL Tier 2, 198
28
+This study, New Tier 2,
29
+New Tier 2, DLBCL Tier 2,
30
+Other studies, DLBCL Tier 1, 128
31
+Other studies, DLBCL Tier 2, 198
29 32
```
30 33
31 34
papers/braggioGenomicAnalysisMarginal2012.md
... ...
@@ -15,17 +15,20 @@ config:
15 15
sankey:
16 16
showValues: true
17 17
linkColor: target
18
- width: 300
18
+ width: 600
19 19
height: 300
20 20
nodeAlignment: right
21 21
prefix: '('
22 22
suffix: ' genes)'
23 23
---
24 24
sankey-beta
25
-This study, MZL Tier 1, 1
25
+This study, New Tier 1, 1
26
+New Tier 1, MZL Tier 1, 1
26 27
This study, MZL Tier 2,
27
-Other MZL studies, MZL Tier 1, 42
28
-Other MZL studies, MZL Tier 2, 74
28
+This study, New Tier 2,
29
+New Tier 2, MZL Tier 2,
30
+Other studies, MZL Tier 1, 42
31
+Other studies, MZL Tier 2, 74
29 32
```
30 33
31 34
papers/burkhardtClinicalRelevanceMolecular2022b.md
... ...
@@ -15,17 +15,20 @@ config:
15 15
sankey:
16 16
showValues: true
17 17
linkColor: target
18
- width: 300
18
+ width: 600
19 19
height: 300
20 20
nodeAlignment: right
21 21
prefix: '('
22 22
suffix: ' genes)'
23 23
---
24 24
sankey-beta
25
-This study, BL Tier 1,
25
+This study, New Tier 1,
26
+New Tier 1, BL Tier 1,
26 27
This study, BL Tier 2, 25
27
-Other BL studies, BL Tier 1, 29
28
-Other BL studies, BL Tier 2, 157
28
+This study, New Tier 2, 25
29
+New Tier 2, BL Tier 2, 25
30
+Other studies, BL Tier 1, 29
31
+Other studies, BL Tier 2, 157
29 32
```
30 33
31 34
papers/chapuyMolecularSubtypesDiffuse2018b.md
... ...
@@ -15,17 +15,20 @@ config:
15 15
sankey:
16 16
showValues: true
17 17
linkColor: target
18
- width: 300
18
+ width: 600
19 19
height: 300
20 20
nodeAlignment: right
21 21
prefix: '('
22 22
suffix: ' genes)'
23 23
---
24 24
sankey-beta
25
-This study, DLBCL Tier 1, 2
25
+This study, New Tier 1, 2
26
+New Tier 1, DLBCL Tier 1, 2
26 27
This study, DLBCL Tier 2, 17
27
-Other DLBCL studies, DLBCL Tier 1, 128
28
-Other DLBCL studies, DLBCL Tier 2, 198
28
+This study, New Tier 2, 17
29
+New Tier 2, DLBCL Tier 2, 17
30
+Other studies, DLBCL Tier 1, 128
31
+Other studies, DLBCL Tier 2, 198
29 32
```
30 33
31 34
papers/cheungAcquiredTNFRSF14Mutations2010a.md
... ...
@@ -8,31 +8,34 @@ bibliography: 'morinlab.bib'
8 8
9 9
|Entity| Tier 1 genes| Tier 2 genes|
10 10
|:-:|:-:|:-:|
11
-|DLBCL|1||
12 11
|FL|1||
12
+|DLBCL|1||
13 13
```mermaid
14 14
---
15 15
config:
16 16
sankey:
17 17
showValues: true
18 18
linkColor: target
19
- width: 300
19
+ width: 600
20 20
height: 300
21 21
nodeAlignment: right
22 22
prefix: '('
23 23
suffix: ' genes)'
24 24
---
25 25
sankey-beta
26
-This study, DLBCL Tier 1, 1
26
+This study, New Tier 1, 1
27
+New Tier 1, DLBCL Tier 1, 1
27 28
This study, DLBCL Tier 2,
28
-Other DLBCL studies, DLBCL Tier 1, 128
29
-Other DLBCL studies, DLBCL Tier 2, 198
29
+This study, New Tier 2,
30
+New Tier 2, DLBCL Tier 2,
31
+Other studies, DLBCL Tier 1, 128
32
+Other studies, DLBCL Tier 2, 198
30 33
```
31 34
32 35
33 36
## Novel genes reported in this study
34 37
35
-|New gene|DLBCL tier|FL tier|
38
+|New gene|FL tier|DLBCL tier|
36 39
|:-|:-:|:-:|
37 40
|[TNFRSF14](TNFRSF14)|1 |1 |
38 41
papers/compagnoMutationsMultipleGenes2009a.md
... ...
@@ -15,17 +15,20 @@ config:
15 15
sankey:
16 16
showValues: true
17 17
linkColor: target
18
- width: 300
18
+ width: 600
19 19
height: 300
20 20
nodeAlignment: right
21 21
prefix: '('
22 22
suffix: ' genes)'
23 23
---
24 24
sankey-beta
25
-This study, DLBCL Tier 1, 1
25
+This study, New Tier 1, 1
26
+New Tier 1, DLBCL Tier 1, 1
26 27
This study, DLBCL Tier 2,
27
-Other DLBCL studies, DLBCL Tier 1, 128
28
-Other DLBCL studies, DLBCL Tier 2, 198
28
+This study, New Tier 2,
29
+New Tier 2, DLBCL Tier 2,
30
+Other studies, DLBCL Tier 1, 128
31
+Other studies, DLBCL Tier 2, 198
29 32
```
30 33
31 34
papers/deschGenotypingCirculatingTumor2020.md
... ...
@@ -15,17 +15,20 @@ config:
15 15
sankey:
16 16
showValues: true
17 17
linkColor: target
18
- width: 300
18
+ width: 600
19 19
height: 300
20 20
nodeAlignment: right
21 21
prefix: '('
22 22
suffix: ' genes)'
23 23
---
24 24
sankey-beta
25
-This study, PMBL Tier 1, 1
25
+This study, New Tier 1, 1
26
+New Tier 1, PMBL Tier 1, 1
26 27
This study, PMBL Tier 2, 9
27
-Other PMBL studies, PMBL Tier 1, 76
28
-Other PMBL studies, PMBL Tier 2, 82
28
+This study, New Tier 2, 9
29
+New Tier 2, PMBL Tier 2, 9
30
+Other studies, PMBL Tier 1, 76
31
+Other studies, PMBL Tier 2, 82
29 32
```
30 33
31 34
papers/dunsCharacterizationDLBCLPMBL2021b.md
... ...
@@ -8,46 +8,49 @@ bibliography: 'morinlab.bib'
8 8
9 9
|Entity| Tier 1 genes| Tier 2 genes|
10 10
|:-:|:-:|:-:|
11
-|DLBCL|8|3|
12 11
|PMBL|6|8|
12
+|DLBCL|8|3|
13 13
```mermaid
14 14
---
15 15
config:
16 16
sankey:
17 17
showValues: true
18 18
linkColor: target
19
- width: 300
19
+ width: 600
20 20
height: 300
21 21
nodeAlignment: right
22 22
prefix: '('
23 23
suffix: ' genes)'
24 24
---
25 25
sankey-beta
26
-This study, PMBL Tier 1, 6
26
+This study, New Tier 1, 6
27
+New Tier 1, PMBL Tier 1, 6
27 28
This study, PMBL Tier 2, 8
28
-Other PMBL studies, PMBL Tier 1, 76
29
-Other PMBL studies, PMBL Tier 2, 82
29
+This study, New Tier 2, 8
30
+New Tier 2, PMBL Tier 2, 8
31
+Other studies, PMBL Tier 1, 76
32
+Other studies, PMBL Tier 2, 82
30 33
```
31 34
32 35
33 36
## Novel genes reported in this study
34 37
35
-|New gene|DLBCL tier|PMBL tier|
38
+|New gene|PMBL tier|DLBCL tier|
36 39
|:-|:-:|:-:|
37 40
|[BIRC3](BIRC3)|2 |2 |
38 41
|[CD83](CD83)|1 |1 |
39 42
|[CREBBP](CREBBP)|1 |1 |
40 43
|[DUSP2](DUSP2)|1 |1 |
41
-|[FOXO1](FOXO1)|1 |2 |
42
-|[HRNR](HRNR)| |2 |
44
+|[FOXO1](FOXO1)|2 |1 |
45
+|[HRNR](HRNR)|2 | |
43 46
|[IL4R](IL4R)|1 |1 |
44
-|[LPHN3](LPHN3)| |2 |
47
+|[LPHN3](LPHN3)|2 | |
45 48
|[MCL1](MCL1)|2 |2 |
46
-|[MYC](MYC)|1 |2 |
49
+|[MYC](MYC)|2 |1 |
47 50
|[PIM1](PIM1)|1 |1 |
48 51
|[RFTN1](RFTN1)|2 |2 |
49 52
|[SGK1](SGK1)|1 |1 |
50
-|[WDR87](WDR87)| |2 |
53
+|[WDR87](WDR87)|2 | |
51 54
52 55
# Details
53 56
papers/ganapathiGeneticLandscapeDural2016.md
... ...
@@ -15,17 +15,20 @@ config:
15 15
sankey:
16 16
showValues: true
17 17
linkColor: target
18
- width: 300
18
+ width: 600
19 19
height: 300
20 20
nodeAlignment: right
21 21
prefix: '('
22 22
suffix: ' genes)'
23 23
---
24 24
sankey-beta
25
-This study, MZL Tier 1, 1
25
+This study, New Tier 1, 1
26
+New Tier 1, MZL Tier 1, 1
26 27
This study, MZL Tier 2,
27
-Other MZL studies, MZL Tier 1, 42
28
-Other MZL studies, MZL Tier 2, 74
28
+This study, New Tier 2,
29
+New Tier 2, MZL Tier 2,
30
+Other studies, MZL Tier 1, 42
31
+Other studies, MZL Tier 2, 74
29 32
```
30 33
31 34
papers/gomezUltraDeepSequencingReveals2023.md
... ...
@@ -15,17 +15,20 @@ config:
15 15
sankey:
16 16
showValues: true
17 17
linkColor: target
18
- width: 300
18
+ width: 600
19 19
height: 300
20 20
nodeAlignment: right
21 21
prefix: '('
22 22
suffix: ' genes)'
23 23
---
24 24
sankey-beta
25
-This study, PMBL Tier 1, 2
25
+This study, New Tier 1, 2
26
+New Tier 1, PMBL Tier 1, 2
26 27
This study, PMBL Tier 2, 5
27
-Other PMBL studies, PMBL Tier 1, 76
28
-Other PMBL studies, PMBL Tier 2, 82
28
+This study, New Tier 2, 5
29
+New Tier 2, PMBL Tier 2, 5
30
+Other studies, PMBL Tier 1, 76
31
+Other studies, PMBL Tier 2, 82
29 32
```
30 33
31 34
papers/grandeGenomewideDiscoverySomatic2019.md
... ...
@@ -15,17 +15,20 @@ config:
15 15
sankey:
16 16
showValues: true
17 17
linkColor: target
18
- width: 300
18
+ width: 600
19 19
height: 300
20 20
nodeAlignment: right
21 21
prefix: '('
22 22
suffix: ' genes)'
23 23
---
24 24
sankey-beta
25
-This study, BL Tier 1, 9
25
+This study, New Tier 1, 9
26
+New Tier 1, BL Tier 1, 9
26 27
This study, BL Tier 2, 4
27
-Other BL studies, BL Tier 1, 29
28
-Other BL studies, BL Tier 2, 157
28
+This study, New Tier 2, 4
29
+New Tier 2, BL Tier 2, 4
30
+Other studies, BL Tier 1, 29
31
+Other studies, BL Tier 2, 157
29 32
```
30 33
31 34
papers/gunawardanaRecurrentSomaticMutations2014c.md
... ...
@@ -15,17 +15,20 @@ config:
15 15
sankey:
16 16
showValues: true
17 17
linkColor: target
18
- width: 300
18
+ width: 600
19 19
height: 300
20 20
nodeAlignment: right
21 21
prefix: '('
22 22
suffix: ' genes)'
23 23
---
24 24
sankey-beta
25
-This study, PMBL Tier 1, 1
25
+This study, New Tier 1, 1
26
+New Tier 1, PMBL Tier 1, 1
26 27
This study, PMBL Tier 2,
27
-Other PMBL studies, PMBL Tier 1, 76
28
-Other PMBL studies, PMBL Tier 2, 82
28
+This study, New Tier 2,
29
+New Tier 2, PMBL Tier 2,
30
+Other studies, PMBL Tier 1, 76
31
+Other studies, PMBL Tier 2, 82
29 32
```
30 33
31 34
papers/hubschmannMutationalMechanismsShaping2021b.md
... ...
@@ -8,70 +8,73 @@ bibliography: 'morinlab.bib'
8 8
9 9
|Entity| Tier 1 genes| Tier 2 genes|
10 10
|:-:|:-:|:-:|
11
-|FL|2|15|
12 11
|DLBCL|3|23|
12
+|FL|2|15|
13 13
```mermaid
14 14
---
15 15
config:
16 16
sankey:
17 17
showValues: true
18 18
linkColor: target
19
- width: 300
19
+ width: 600
20 20
height: 300
21 21
nodeAlignment: right
22 22
prefix: '('
23 23
suffix: ' genes)'
24 24
---
25 25
sankey-beta
26
-This study, DLBCL Tier 1, 3
26
+This study, New Tier 1, 3
27
+New Tier 1, DLBCL Tier 1, 3
27 28
This study, DLBCL Tier 2, 23
28
-Other DLBCL studies, DLBCL Tier 1, 128
29
-Other DLBCL studies, DLBCL Tier 2, 198
29
+This study, New Tier 2, 23
30
+New Tier 2, DLBCL Tier 2, 23
31
+Other studies, DLBCL Tier 1, 128
32
+Other studies, DLBCL Tier 2, 198
30 33
```
31 34
32 35
33 36
## Novel genes reported in this study
34 37
35
-|New gene|FL tier|DLBCL tier|
38
+|New gene|DLBCL tier|FL tier|
36 39
|:-|:-:|:-:|
37
-|[ACTG1](ACTG1)|2 |1 |
38
-|[ADAMTS1](ADAMTS1)| |2 |
39
-|[ANKRD12](ANKRD12)| |2 |
40
-|[ATP6V1A](ATP6V1A)|2 | |
41
-|[CADPS2](CADPS2)| |2 |
42
-|[CCDC42BPB](CCDC42BPB)|2 | |
43
-|[CNOT2](CNOT2)| |2 |
44
-|[CPNE8](CPNE8)|2 | |
45
-|[DHX15](DHX15)|2 | |
46
-|[DHX16](DHX16)| |2 |
47
-|[DNM2](DNM2)| |2 |
40
+|[ACTG1](ACTG1)|1 |2 |
41
+|[ADAMTS1](ADAMTS1)|2 | |
42
+|[ANKRD12](ANKRD12)|2 | |
43
+|[ATP6V1A](ATP6V1A)| |2 |
44
+|[CADPS2](CADPS2)|2 | |
45
+|[CCDC42BPB](CCDC42BPB)| |2 |
46
+|[CNOT2](CNOT2)|2 | |
47
+|[CPNE8](CPNE8)| |2 |
48
+|[DHX15](DHX15)| |2 |
49
+|[DHX16](DHX16)|2 | |
50
+|[DNM2](DNM2)|2 | |
48 51
|[EEF1A1](EEF1A1)|1 |1 |
49
-|[FBXO11](FBXO11)| |1 |
50
-|[FZR1](FZR1)|2 | |
51
-|[GAK](GAK)| |2 |
52
-|[HLA-DQA1](HLA-DQA1)| |2 |
53
-|[IKBKE](IKBKE)| |2 |
54
-|[IRF1](IRF1)| |2 |
55
-|[JUP](JUP)|2 | |
52
+|[FBXO11](FBXO11)|1 | |
53
+|[FZR1](FZR1)| |2 |
54
+|[GAK](GAK)|2 | |
55
+|[HLA-DQA1](HLA-DQA1)|2 | |
56
+|[IKBKE](IKBKE)|2 | |
57
+|[IRF1](IRF1)|2 | |
58
+|[JUP](JUP)| |2 |
56 59
|[LAPTM5](LAPTM5)|2 |2 |
57
-|[LRP12](LRP12)| |2 |
58
-|[MGEA5](MGEA5)|2 | |
59
-|[MYCBP2](MYCBP2)|2 | |
60
-|[N2RF2](N2RF2)| |2 |
60
+|[LRP12](LRP12)|2 | |
61
+|[MGEA5](MGEA5)| |2 |
62
+|[MYCBP2](MYCBP2)| |2 |
63
+|[N2RF2](N2RF2)|2 | |
61 64
|[PDS5B](PDS5B)|2 |2 |
62
-|[PNPO](PNPO)| |2 |
63
-|[PPP4C](PPP4C)|2 | |
65
+|[PNPO](PNPO)|2 | |
66
+|[PPP4C](PPP4C)| |2 |
64 67
|[PRKDC](PRKDC)|2 |2 |
65
-|[RAC2](RAC2)| |2 |
66
-|[RBM6](RBM6)|2 | |
67
-|[SIAH2](SIAH2)| |2 |
68
-|[SLC34A2](SLC34A2)| |2 |
69
-|[TPP1](TPP1)|2 | |
70
-|[TRAF6](TRAF6)| |2 |
71
-|[UNC5B](UNC5B)| |2 |
72
-|[VMA21](VMA21)|1 | |
73
-|[WNK1](WNK1)| |2 |
74
-|[ZNF217](ZNF217)| |2 |
68
+|[RAC2](RAC2)|2 | |
69
+|[RBM6](RBM6)| |2 |
70
+|[SIAH2](SIAH2)|2 | |
71
+|[SLC34A2](SLC34A2)|2 | |
72
+|[TPP1](TPP1)| |2 |
73
+|[TRAF6](TRAF6)|2 | |
74
+|[UNC5B](UNC5B)|2 | |
75
+|[VMA21](VMA21)| |1 |
76
+|[WNK1](WNK1)|2 | |
77
+|[ZNF217](ZNF217)|2 | |
75 78
76 79
# Details
77 80
papers/jalladesExomeSequencingIdentifies2017.md
... ...
@@ -15,17 +15,20 @@ config:
15 15
sankey:
16 16
showValues: true
17 17
linkColor: target
18
- width: 300
18
+ width: 600
19 19
height: 300
20 20
nodeAlignment: right
21 21
prefix: '('
22 22
suffix: ' genes)'
23 23
---
24 24
sankey-beta
25
-This study, MZL Tier 1, 2
25
+This study, New Tier 1, 2
26
+New Tier 1, MZL Tier 1, 2
26 27
This study, MZL Tier 2, 26
27
-Other MZL studies, MZL Tier 1, 42
28
-Other MZL studies, MZL Tier 2, 74
28
+This study, New Tier 2, 26
29
+New Tier 2, MZL Tier 2, 26
30
+Other studies, MZL Tier 1, 42
31
+Other studies, MZL Tier 2, 74
29 32
```
30 33
31 34
papers/jardinRecurrentMutationsExportin2016a.md
... ...
@@ -15,17 +15,20 @@ config:
15 15
sankey:
16 16
showValues: true
17 17
linkColor: target
18
- width: 300
18
+ width: 600
19 19
height: 300
20 20
nodeAlignment: right
21 21
prefix: '('
22 22
suffix: ' genes)'
23 23
---
24 24
sankey-beta
25
-This study, PMBL Tier 1, 1
25
+This study, New Tier 1, 1
26
+New Tier 1, PMBL Tier 1, 1
26 27
This study, PMBL Tier 2,
27
-Other PMBL studies, PMBL Tier 1, 76
28
-Other PMBL studies, PMBL Tier 2, 82
28
+This study, New Tier 2,
29
+New Tier 2, PMBL Tier 2,
30
+Other studies, PMBL Tier 1, 76
31
+Other studies, PMBL Tier 2, 82
29 32
```
30 33
31 34
papers/johnstonCmycHypermutationBurkitt1992.md
... ...
@@ -15,17 +15,20 @@ config:
15 15
sankey:
16 16
showValues: true
17 17
linkColor: target
18
- width: 300
18
+ width: 600
19 19
height: 300
20 20
nodeAlignment: right
21 21
prefix: '('
22 22
suffix: ' genes)'
23 23
---
24 24
sankey-beta
25
-This study, BL Tier 1, 1
25
+This study, New Tier 1, 1
26
+New Tier 1, BL Tier 1, 1
26 27
This study, BL Tier 2,
27
-Other BL studies, BL Tier 1, 29
28
-Other BL studies, BL Tier 2, 157
28
+This study, New Tier 2,
29
+New Tier 2, BL Tier 2,
30
+Other studies, BL Tier 1, 29
31
+Other studies, BL Tier 2, 157
29 32
```
30 33
31 34
papers/khodabakhshiRecurrentTargetsAberrant2012.md
... ...
@@ -15,17 +15,20 @@ config:
15 15
sankey:
16 16
showValues: true
17 17
linkColor: target
18
- width: 300
18
+ width: 600
19 19
height: 300
20 20
nodeAlignment: right
21 21
prefix: '('
22 22
suffix: ' genes)'
23 23
---
24 24
sankey-beta
25
-This study, DLBCL Tier 1, 1
25
+This study, New Tier 1, 1
26
+New Tier 1, DLBCL Tier 1, 1
26 27
This study, DLBCL Tier 2,
27
-Other DLBCL studies, DLBCL Tier 1, 128
28
-Other DLBCL studies, DLBCL Tier 2, 198
28
+This study, New Tier 2,
29
+New Tier 2, DLBCL Tier 2,
30
+Other studies, DLBCL Tier 1, 128
31
+Other studies, DLBCL Tier 2, 198
29 32
```
30 33
31 34
papers/krysiakRecurrentSomaticMutations2017b.md
... ...
@@ -15,17 +15,20 @@ config:
15 15
sankey:
16 16
showValues: true
17 17
linkColor: target
18
- width: 300
18
+ width: 600
19 19
height: 300
20 20
nodeAlignment: right
21 21
prefix: '('
22 22
suffix: ' genes)'
23 23
---
24 24
sankey-beta
25
-This study, FL Tier 1, 17
25
+This study, New Tier 1, 17
26
+New Tier 1, FL Tier 1, 17
26 27
This study, FL Tier 2, 5
27
-Other FL studies, FL Tier 1, 66
28
-Other FL studies, FL Tier 2, 50
28
+This study, New Tier 2, 5
29
+New Tier 2, FL Tier 2, 5
30
+Other studies, FL Tier 1, 66
31
+Other studies, FL Tier 2, 50
29 32
```
30 33
31 34
papers/kwanhianMicroRNA142Mutated202012b.md
... ...
@@ -15,17 +15,20 @@ config:
15 15
sankey:
16 16
showValues: true
17 17
linkColor: target
18
- width: 300
18
+ width: 600
19 19
height: 300
20 20
nodeAlignment: right
21 21
prefix: '('
22 22
suffix: ' genes)'
23 23
---
24 24
sankey-beta
25
-This study, DLBCL Tier 1,
25
+This study, New Tier 1,
26
+New Tier 1, DLBCL Tier 1,
26 27
This study, DLBCL Tier 2, 1
27
-Other DLBCL studies, DLBCL Tier 1, 128
28
-Other DLBCL studies, DLBCL Tier 2, 198
28
+This study, New Tier 2, 1
29
+New Tier 2, DLBCL Tier 2, 1
30
+Other studies, DLBCL Tier 1, 128
31
+Other studies, DLBCL Tier 2, 198
29 32
```
30 33
31 34
papers/lakeMutationsNFKBIAEncoding2009.md
... ...
@@ -15,17 +15,20 @@ config:
15 15
sankey:
16 16
showValues: true
17 17
linkColor: target
18
- width: 300
18
+ width: 600
19 19
height: 300
20 20
nodeAlignment: right
21 21
prefix: '('
22 22
suffix: ' genes)'
23 23
---
24 24
sankey-beta
25
-This study, DLBCL Tier 1, 1
25
+This study, New Tier 1, 1
26
+New Tier 1, DLBCL Tier 1, 1
26 27
This study, DLBCL Tier 2,
27
-Other DLBCL studies, DLBCL Tier 1, 128
28
-Other DLBCL studies, DLBCL Tier 2, 198
28
+This study, New Tier 2,
29
+New Tier 2, DLBCL Tier 2,
30
+Other studies, DLBCL Tier 1, 128
31
+Other studies, DLBCL Tier 2, 198
29 32
```
30 33
31 34
papers/lenzOncogenicCARD11Mutations2008.md
... ...
@@ -15,17 +15,20 @@ config:
15 15
sankey:
16 16
showValues: true
17 17
linkColor: target
18
- width: 300
18
+ width: 600
19 19
height: 300
20 20
nodeAlignment: right
21 21
prefix: '('
22 22
suffix: ' genes)'
23 23
---
24 24
sankey-beta
25
-This study, DLBCL Tier 1, 1
25
+This study, New Tier 1, 1
26
+New Tier 1, DLBCL Tier 1, 1
26 27
This study, DLBCL Tier 2,
27
-Other DLBCL studies, DLBCL Tier 1, 128
28
-Other DLBCL studies, DLBCL Tier 2, 198
28
+This study, New Tier 2,
29
+New Tier 2, DLBCL Tier 2,
30
+Other studies, DLBCL Tier 1, 128
31
+Other studies, DLBCL Tier 2, 198
29 32
```
30 33
31 34
papers/lohrDiscoveryPrioritizationSomatic2012a.md
... ...
@@ -15,17 +15,20 @@ config:
15 15
sankey:
16 16
showValues: true
17 17
linkColor: target
18
- width: 300
18
+ width: 600
19 19
height: 300
20 20
nodeAlignment: right
21 21
prefix: '('
22 22
suffix: ' genes)'
23 23
---
24 24
sankey-beta
25
-This study, DLBCL Tier 1, 3
25
+This study, New Tier 1, 3
26
+New Tier 1, DLBCL Tier 1, 3
26 27
This study, DLBCL Tier 2, 1
27
-Other DLBCL studies, DLBCL Tier 1, 128
28
-Other DLBCL studies, DLBCL Tier 2, 198
28
+This study, New Tier 2, 1
29
+New Tier 2, DLBCL Tier 2, 1
30
+Other studies, DLBCL Tier 1, 128
31
+Other studies, DLBCL Tier 2, 198
29 32
```
30 33
31 34
papers/louissaintPediatrictypeNodalFollicular2016a.md
... ...
@@ -15,17 +15,20 @@ config:
15 15
sankey:
16 16
showValues: true
17 17
linkColor: target
18
- width: 300
18
+ width: 600
19 19
height: 300
20 20
nodeAlignment: right
21 21
prefix: '('
22 22
suffix: ' genes)'
23 23
---
24 24
sankey-beta
25
-This study, FL Tier 1, 1
25
+This study, New Tier 1, 1
26
+New Tier 1, FL Tier 1, 1
26 27
This study, FL Tier 2,
27
-Other FL studies, FL Tier 1, 66
28
-Other FL studies, FL Tier 2, 50
28
+This study, New Tier 2,
29
+New Tier 2, FL Tier 2,
30
+Other studies, FL Tier 1, 66
31
+Other studies, FL Tier 2, 50
29 32
```
30 33
31 34
papers/loveGeneticLandscapeMutations2012.md
... ...
@@ -15,17 +15,20 @@ config:
15 15
sankey:
16 16
showValues: true
17 17
linkColor: target
18
- width: 300
18
+ width: 600
19 19
height: 300
20 20
nodeAlignment: right
21 21
prefix: '('
22 22
suffix: ' genes)'
23 23
---
24 24
sankey-beta
25
-This study, BL Tier 1, 3
25
+This study, New Tier 1, 3
26
+New Tier 1, BL Tier 1, 3
26 27
This study, BL Tier 2, 56
27
-Other BL studies, BL Tier 1, 29
28
-Other BL studies, BL Tier 2, 157
28
+This study, New Tier 2, 56
29
+New Tier 2, BL Tier 2, 56
30
+Other studies, BL Tier 1, 29
31
+Other studies, BL Tier 2, 157
29 32
```
30 33
31 34
papers/mansouriFrequentNFKBIEDeletions2016.md
... ...
@@ -15,17 +15,20 @@ config:
15 15
sankey:
16 16
showValues: true
17 17
linkColor: target
18
- width: 300
18
+ width: 600
19 19
height: 300
20 20
nodeAlignment: right
21 21
prefix: '('
22 22
suffix: ' genes)'
23 23
---
24 24
sankey-beta
25
-This study, PMBL Tier 1, 1
25
+This study, New Tier 1, 1
26
+New Tier 1, PMBL Tier 1, 1
26 27
This study, PMBL Tier 2,
27
-Other PMBL studies, PMBL Tier 1, 76
28
-Other PMBL studies, PMBL Tier 2, 82
28
+This study, New Tier 2,
29
+New Tier 2, PMBL Tier 2,
30
+Other studies, PMBL Tier 1, 76
31
+Other studies, PMBL Tier 2, 82
29 32
```
30 33
31 34
papers/mareschalWholeExomeSequencing2016.md
... ...
@@ -15,17 +15,20 @@ config:
15 15
sankey:
16 16
showValues: true
17 17
linkColor: target
18
- width: 300
18
+ width: 600
19 19
height: 300
20 20
nodeAlignment: right
21 21
prefix: '('
22 22
suffix: ' genes)'
23 23
---
24 24
sankey-beta
25
-This study, DLBCL Tier 1, 2
25
+This study, New Tier 1, 2
26
+New Tier 1, DLBCL Tier 1, 2
26 27
This study, DLBCL Tier 2,
27
-Other DLBCL studies, DLBCL Tier 1, 128
28
-Other DLBCL studies, DLBCL Tier 2, 198
28
+This study, New Tier 2,
29
+New Tier 2, DLBCL Tier 2,
30
+Other studies, DLBCL Tier 1, 128
31
+Other studies, DLBCL Tier 2, 198
29 32
```
30 33
31 34
papers/morinFrequentMutationHistonemodifying2011.md
... ...
@@ -8,46 +8,49 @@ bibliography: 'morinlab.bib'
8 8
9 9
|Entity| Tier 1 genes| Tier 2 genes|
10 10
|:-:|:-:|:-:|
11
-|FL|19|4|
12 11
|DLBCL|27|1|
12
+|FL|19|4|
13 13
```mermaid
14 14
---
15 15
config:
16 16
sankey:
17 17
showValues: true
18 18
linkColor: target
19
- width: 300
19
+ width: 600
20 20
height: 300
21 21
nodeAlignment: right
22 22
prefix: '('
23 23
suffix: ' genes)'
24 24
---
25 25
sankey-beta
26
-This study, DLBCL Tier 1, 27
26
+This study, New Tier 1, 27
27
+New Tier 1, DLBCL Tier 1, 27
27 28
This study, DLBCL Tier 2, 1
28
-Other DLBCL studies, DLBCL Tier 1, 128
29
-Other DLBCL studies, DLBCL Tier 2, 198
29
+This study, New Tier 2, 1
30
+New Tier 2, DLBCL Tier 2, 1
31
+Other studies, DLBCL Tier 1, 128
32
+Other studies, DLBCL Tier 2, 198
30 33
```
31 34
32 35
33 36
## Novel genes reported in this study
34 37
35
-|New gene|FL tier|DLBCL tier|
38
+|New gene|DLBCL tier|FL tier|
36 39
|:-|:-:|:-:|
37 40
|[B2M](B2M)|1 |1 |
38
-|[BCL10](BCL10)|2 |1 |
41
+|[BCL10](BCL10)|1 |2 |
39 42
|[BCL2](BCL2)|1 |1 |
40 43
|[BCL6](BCL6)|1 |1 |
41 44
|[BTG1](BTG1)|1 |1 |
42 45
|[BTG2](BTG2)|1 |1 |
43 46
|[CARD11](CARD11)|1 |1 |
44 47
|[CCND3](CCND3)|1 |1 |
45
-|[CD274](CD274)| |2 |
46
-|[CD58](CD58)| |1 |
47
-|[CD70](CD70)|2 |1 |
48
-|[CD79B](CD79B)|2 |1 |
49
-|[CIITA](CIITA)| |1 |
50
-|[ETS1](ETS1)| |1 |
48
+|[CD274](CD274)|2 | |
49
+|[CD58](CD58)|1 | |
50
+|[CD70](CD70)|1 |2 |
51
+|[CD79B](CD79B)|1 |2 |
52
+|[CIITA](CIITA)|1 | |
53
+|[ETS1](ETS1)|1 | |
51 54
|[FOXO1](FOXO1)|1 |1 |
52 55
|[GNA13](GNA13)|1 |1 |
53 56
|[HIST1H1C](HIST1H1C)|1 |1 |
... ...
@@ -59,9 +62,9 @@ Other DLBCL studies, DLBCL Tier 2, 198
59 62
|[S1PR2](S1PR2)|1 |1 |
60 63
|[SGK1](SGK1)|1 |1 |
61 64
|[SOCS1](SOCS1)|1 |1 |
62
-|[TMEM30A](TMEM30A)|2 |1 |
65
+|[TMEM30A](TMEM30A)|1 |2 |
63 66
|[TP53](TP53)|1 |1 |
64
-|[ZFP36L1](ZFP36L1)| |1 |
67
+|[ZFP36L1](ZFP36L1)|1 | |
65 68
66 69
# Details
67 70
papers/morinGeneticLandscapesRelapsed2016.md
... ...
@@ -15,17 +15,20 @@ config:
15 15
sankey:
16 16
showValues: true
17 17
linkColor: target
18
- width: 300
18
+ width: 600
19 19
height: 300
20 20
nodeAlignment: right
21 21
prefix: '('
22 22
suffix: ' genes)'
23 23
---
24 24
sankey-beta
25
-This study, DLBCL Tier 1, 2
25
+This study, New Tier 1, 2
26
+New Tier 1, DLBCL Tier 1, 2
26 27
This study, DLBCL Tier 2,
27
-Other DLBCL studies, DLBCL Tier 1, 128
28
-Other DLBCL studies, DLBCL Tier 2, 198
28
+This study, New Tier 2,
29
+New Tier 2, DLBCL Tier 2,
30
+Other studies, DLBCL Tier 1, 128
31
+Other studies, DLBCL Tier 2, 198
29 32
```
30 33
31 34
papers/morinMutationalStructuralAnalysis2013.md
... ...
@@ -15,17 +15,20 @@ config:
15 15
sankey:
16 16
showValues: true
17 17
linkColor: target
18
- width: 300
18
+ width: 600
19 19
height: 300
20 20
nodeAlignment: right
21 21
prefix: '('
22 22
suffix: ' genes)'
23 23
---
24 24
sankey-beta
25
-This study, DLBCL Tier 1, 11
25
+This study, New Tier 1, 11
26
+New Tier 1, DLBCL Tier 1, 11
26 27
This study, DLBCL Tier 2, 29
27
-Other DLBCL studies, DLBCL Tier 1, 128
28
-Other DLBCL studies, DLBCL Tier 2, 198
28
+This study, New Tier 2, 29
29
+New Tier 2, DLBCL Tier 2, 29
30
+Other studies, DLBCL Tier 1, 128
31
+Other studies, DLBCL Tier 2, 198
29 32
```
30 33
31 34
papers/morinSomaticMutationsAltering2010a.md
... ...
@@ -16,17 +16,20 @@ config:
16 16
sankey:
17 17
showValues: true
18 18
linkColor: target
19
- width: 300
19
+ width: 600
20 20
height: 300
21 21
nodeAlignment: right
22 22
prefix: '('
23 23
suffix: ' genes)'
24 24
---
25 25
sankey-beta
26
-This study, DLBCL Tier 1, 1
27
-This study, DLBCL Tier 2,
28
-Other DLBCL studies, DLBCL Tier 1, 128
29
-Other DLBCL studies, DLBCL Tier 2, 198
26
+This study, New Tier 1, 1
27
+New Tier 1, FL Tier 1, 1
28
+This study, FL Tier 2,
29
+This study, New Tier 2,
30
+New Tier 2, FL Tier 2,
31
+Other studies, FL Tier 1, 66
32
+Other studies, FL Tier 2, 50
30 33
```
31 34
32 35
papers/mottokGenomicAlterationsCIITA2015b.md
... ...
@@ -15,17 +15,20 @@ config:
15 15
sankey:
16 16
showValues: true
17 17
linkColor: target
18
- width: 300
18
+ width: 600
19 19
height: 300
20 20
nodeAlignment: right
21 21
prefix: '('
22 22
suffix: ' genes)'
23 23
---
24 24
sankey-beta
25
-This study, PMBL Tier 1, 1
25
+This study, New Tier 1, 1
26
+New Tier 1, PMBL Tier 1, 1
26 27
This study, PMBL Tier 2,
27
-Other PMBL studies, PMBL Tier 1, 76
28
-Other PMBL studies, PMBL Tier 2, 82
28
+This study, New Tier 2,
29
+New Tier 2, PMBL Tier 2,
30
+Other studies, PMBL Tier 1, 76
31
+Other studies, PMBL Tier 2, 82
29 32
```
30 33
31 34
papers/mottokIntegrativeGenomicAnalysis2019b.md
... ...
@@ -15,17 +15,20 @@ config:
15 15
sankey:
16 16
showValues: true
17 17
linkColor: target
18
- width: 300
18
+ width: 600
19 19
height: 300
20 20
nodeAlignment: right
21 21
prefix: '('
22 22
suffix: ' genes)'
23 23
---
24 24
sankey-beta
25
-This study, PMBL Tier 1, 6
25
+This study, New Tier 1, 6
26
+New Tier 1, PMBL Tier 1, 6
26 27
This study, PMBL Tier 2, 15
27
-Other PMBL studies, PMBL Tier 1, 76
28
-Other PMBL studies, PMBL Tier 2, 82
28
+This study, New Tier 2, 15
29
+New Tier 2, PMBL Tier 2, 15
30
+Other studies, PMBL Tier 1, 76
31
+Other studies, PMBL Tier 2, 82
29 32
```
30 33
31 34
papers/muppidiLossSignalingGa132014b.md
... ...
@@ -15,17 +15,20 @@ config:
15 15
sankey:
16 16
showValues: true
17 17
linkColor: target
18
- width: 300
18
+ width: 600
19 19
height: 300
20 20
nodeAlignment: right
21 21
prefix: '('
22 22
suffix: ' genes)'
23 23
---
24 24
sankey-beta
25
-This study, BL Tier 1, 1
25
+This study, New Tier 1, 1
26
+New Tier 1, BL Tier 1, 1
26 27
This study, BL Tier 2, 2
27
-Other BL studies, BL Tier 1, 29
28
-Other BL studies, BL Tier 2, 157
28
+This study, New Tier 2, 2
29
+New Tier 2, BL Tier 2, 2
30
+Other studies, BL Tier 1, 29
31
+Other studies, BL Tier 2, 157
29 32
```
30 33
31 34
papers/nadeuGenomicEpigenomicInsights2020b.md
... ...
@@ -15,17 +15,20 @@ config:
15 15
sankey:
16 16
showValues: true
17 17
linkColor: target
18
- width: 300
18
+ width: 600
19 19
height: 300
20 20
nodeAlignment: right
21 21
prefix: '('
22 22
suffix: ' genes)'
23 23
---
24 24
sankey-beta
25
-This study, MCL Tier 1, 3
25
+This study, New Tier 1, 3
26
+New Tier 1, MCL Tier 1, 3
26 27
This study, MCL Tier 2, 2
27
-Other MCL studies, MCL Tier 1, 23
28
-Other MCL studies, MCL Tier 2, 46
28
+This study, New Tier 2, 2
29
+New Tier 2, MCL Tier 2, 2
30
+Other studies, MCL Tier 1, 23
31
+Other studies, MCL Tier 2, 46
29 32
```
30 33
31 34
papers/ngoOncogenicallyActiveMYD882011a.md
... ...
@@ -15,17 +15,20 @@ config:
15 15
sankey:
16 16
showValues: true
17 17
linkColor: target
18
- width: 300
18
+ width: 600
19 19
height: 300
20 20
nodeAlignment: right
21 21
prefix: '('
22 22
suffix: ' genes)'
23 23
---
24 24
sankey-beta
25
-This study, DLBCL Tier 1, 1
25
+This study, New Tier 1, 1
26
+New Tier 1, DLBCL Tier 1, 1
26 27
This study, DLBCL Tier 2,
27
-Other DLBCL studies, DLBCL Tier 1, 128
28
-Other DLBCL studies, DLBCL Tier 2, 198
28
+This study, New Tier 2,
29
+New Tier 2, DLBCL Tier 2,
30
+Other studies, DLBCL Tier 1, 128
31
+Other studies, DLBCL Tier 2, 198
29 32
```
30 33
31 34
papers/ohgamiSTAT3MutationsAre2014.md
... ...
@@ -15,17 +15,20 @@ config:
15 15
sankey:
16 16
showValues: true
17 17
linkColor: target
18
- width: 300
18
+ width: 600
19 19
height: 300
20 20
nodeAlignment: right
21 21
prefix: '('
22 22
suffix: ' genes)'
23 23
---
24 24
sankey-beta
25
-This study, DLBCL Tier 1, 1
25
+This study, New Tier 1, 1
26
+New Tier 1, DLBCL Tier 1, 1
26 27
This study, DLBCL Tier 2,
27
-Other DLBCL studies, DLBCL Tier 1, 128
28
-Other DLBCL studies, DLBCL Tier 2, 198
28
+This study, New Tier 2,
29
+New Tier 2, DLBCL Tier 2,
30
+Other studies, DLBCL Tier 1, 128
31
+Other studies, DLBCL Tier 2, 198
29 32
```
30 33
31 34
papers/okosunRecurrentMTORC1activatingRRAGC2016a.md
... ...
@@ -16,17 +16,20 @@ config:
16 16
sankey:
17 17
showValues: true
18 18
linkColor: target
19
- width: 300
19
+ width: 600
20 20
height: 300
21 21
nodeAlignment: right
22 22
prefix: '('
23 23
suffix: ' genes)'
24 24
---
25 25
sankey-beta
26
-This study, FL Tier 1, 3
26
+This study, New Tier 1, 3
27
+New Tier 1, FL Tier 1, 3
27 28
This study, FL Tier 2,
28
-Other FL studies, FL Tier 1, 66
29
-Other FL studies, FL Tier 2, 50
29
+This study, New Tier 2,
30
+New Tier 2, FL Tier 2,
31
+Other studies, FL Tier 1, 66
32
+Other studies, FL Tier 2, 50
30 33
```
31 34
32 35
papers/oricchioGeneticEpigeneticInactivation2017b.md
... ...
@@ -15,17 +15,20 @@ config:
15 15
sankey:
16 16
showValues: true
17 17
linkColor: target
18
- width: 300
18
+ width: 600
19 19
height: 300
20 20
nodeAlignment: right
21 21
prefix: '('
22 22
suffix: ' genes)'
23 23
---
24 24
sankey-beta
25
-This study, FL Tier 1,
25
+This study, New Tier 1,
26
+New Tier 1, FL Tier 1,
26 27
This study, FL Tier 2, 1
27
-Other FL studies, FL Tier 1, 66
28
-Other FL studies, FL Tier 2, 50
28
+This study, New Tier 2, 1
29
+New Tier 2, FL Tier 2, 1
30
+Other studies, FL Tier 1, 66
31
+Other studies, FL Tier 2, 50
29 32
```
30 33
31 34
papers/ottoGeneticLesionsTRAF32012a.md
... ...
@@ -15,17 +15,20 @@ config:
15 15
sankey:
16 16
showValues: true
17 17
linkColor: target
18
- width: 300
18
+ width: 600
19 19
height: 300
20 20
nodeAlignment: right
21 21
prefix: '('
22 22
suffix: ' genes)'
23 23
---
24 24
sankey-beta
25
-This study, PMBL Tier 1, 2
25
+This study, New Tier 1, 2
26
+New Tier 1, PMBL Tier 1, 2
26 27
This study, PMBL Tier 2,
27
-Other PMBL studies, PMBL Tier 1, 76
28
-Other PMBL studies, PMBL Tier 2, 82
28
+This study, New Tier 2,
29
+New Tier 2, PMBL Tier 2,
30
+Other studies, PMBL Tier 1, 76
31
+Other studies, PMBL Tier 2, 82
29 32
```
30 33
31 34
papers/paneaWholeGenomeLandscape2019.md
... ...
@@ -17,17 +17,18 @@ config:
17 17
linkColor: target
18 18
width: 600
19 19
height: 300
20
- nodeAlignment: left
20
+ nodeAlignment: right
21 21
prefix: '('
22 22
suffix: ' genes)'
23 23
---
24 24
sankey-beta
25 25
This study, New Tier 1, 4
26 26
New Tier 1, BL Tier 1, 4
27
+This study, BL Tier 2, 46
27 28
This study, New Tier 2, 46
28 29
New Tier 2, BL Tier 2, 46
29
-Other BL studies, BL Tier 1, 29
30
-Other BL studies, BL Tier 2, 157
30
+Other studies, BL Tier 1, 29
31
+Other studies, BL Tier 2, 157
31 32
```
32 33
33 34
papers/pararajalingamCodingNoncodingDrivers2020.md
... ...
@@ -16,17 +16,20 @@ config:
16 16
sankey:
17 17
showValues: true
18 18
linkColor: target
19
- width: 300
19
+ width: 600
20 20
height: 300
21 21
nodeAlignment: right
22 22
prefix: '('
23 23
suffix: ' genes)'
24 24
---
25 25
sankey-beta
26
-This study, MCL Tier 1, 6
26
+This study, New Tier 1, 6
27
+New Tier 1, MCL Tier 1, 6
27 28
This study, MCL Tier 2, 1
28
-Other MCL studies, MCL Tier 1, 23
29
-Other MCL studies, MCL Tier 2, 46
29
+This study, New Tier 2, 1
30
+New Tier 2, MCL Tier 2, 1
31
+Other studies, MCL Tier 1, 23
32
+Other studies, MCL Tier 2, 46
30 33
```
31 34
32 35
papers/parryWholeExomeSequencing2013.md
... ...
@@ -8,40 +8,43 @@ bibliography: 'morinlab.bib'
8 8
9 9
|Entity| Tier 1 genes| Tier 2 genes|
10 10
|:-:|:-:|:-:|
11
-|MZL||8|
12 11
|DLBCL|3|1|
12
+|MZL||8|
13 13
```mermaid
14 14
---
15 15
config:
16 16
sankey:
17 17
showValues: true
18 18
linkColor: target
19
- width: 300
19
+ width: 600
20 20
height: 300
21 21
nodeAlignment: right
22 22
prefix: '('
23 23
suffix: ' genes)'
24 24
---
25 25
sankey-beta
26
-This study, MZL Tier 1,
26
+This study, New Tier 1,
27
+New Tier 1, MZL Tier 1,
27 28
This study, MZL Tier 2, 8
28
-Other MZL studies, MZL Tier 1, 42
29
-Other MZL studies, MZL Tier 2, 74
29
+This study, New Tier 2, 8
30
+New Tier 2, MZL Tier 2, 8
31
+Other studies, MZL Tier 1, 42
32
+Other studies, MZL Tier 2, 74
30 33
```
31 34
32 35
33 36
## Novel genes reported in this study
34 37
35
-|New gene|MZL tier|DLBCL tier|
38
+|New gene|DLBCL tier|MZL tier|
36 39
|:-|:-:|:-:|
37
-|[AMOTL1](AMOTL1)|2 | |
38
-|[CBFA2T3](CBFA2T3)|2 | |
39
-|[CREBBP](CREBBP)|2 |1 |
40
+|[AMOTL1](AMOTL1)| |2 |
41
+|[CBFA2T3](CBFA2T3)| |2 |
42
+|[CREBBP](CREBBP)|1 |2 |
40 43
|[FAT4](FAT4)|2 |2 |
41
-|[FBXO11](FBXO11)|2 |1 |
42
-|[PLA2G4D](PLA2G4D)|2 | |
43
-|[TRRAP](TRRAP)|2 |1 |
44
-|[USH2A](USH2A)|2 | |
44
+|[FBXO11](FBXO11)|1 |2 |
45
+|[PLA2G4D](PLA2G4D)| |2 |
46
+|[TRRAP](TRRAP)|1 |2 |
47
+|[USH2A](USH2A)| |2 |
45 48
46 49
# Details
47 50
papers/pasqualucciAnalysisCodingGenome2011.md
... ...
@@ -15,17 +15,20 @@ config:
15 15
sankey:
16 16
showValues: true
17 17
linkColor: target
18
- width: 300
18
+ width: 600
19 19
height: 300
20 20
nodeAlignment: right
21 21
prefix: '('
22 22
suffix: ' genes)'
23 23
---
24 24
sankey-beta
25
-This study, DLBCL Tier 1, 3
25
+This study, New Tier 1, 3
26
+New Tier 1, DLBCL Tier 1, 3
26 27
This study, DLBCL Tier 2, 4
27
-Other DLBCL studies, DLBCL Tier 1, 128
28
-Other DLBCL studies, DLBCL Tier 2, 198
28
+This study, New Tier 2, 4
29
+New Tier 2, DLBCL Tier 2, 4
30
+Other studies, DLBCL Tier 1, 128
31
+Other studies, DLBCL Tier 2, 198
29 32
```
30 33
31 34
papers/pasqualucciHypermutationMultipleProtooncogenes2001a.md
... ...
@@ -15,17 +15,20 @@ config:
15 15
sankey:
16 16
showValues: true
17 17
linkColor: target
18
- width: 300
18
+ width: 600
19 19
height: 300
20 20
nodeAlignment: right
21 21
prefix: '('
22 22
suffix: ' genes)'
23 23
---
24 24
sankey-beta
25
-This study, DLBCL Tier 1, 2
25
+This study, New Tier 1, 2
26
+New Tier 1, DLBCL Tier 1, 2
26 27
This study, DLBCL Tier 2, 2
27
-Other DLBCL studies, DLBCL Tier 1, 128
28
-Other DLBCL studies, DLBCL Tier 2, 198
28
+This study, New Tier 2, 2
29
+New Tier 2, DLBCL Tier 2, 2
30
+Other studies, DLBCL Tier 1, 128
31
+Other studies, DLBCL Tier 2, 198
29 32
```
30 33
31 34
papers/pasqualucciInactivatingMutationsAcetyltransferase2011a.md
... ...
@@ -16,17 +16,20 @@ config:
16 16
sankey:
17 17
showValues: true
18 18
linkColor: target
19
- width: 300
19
+ width: 600
20 20
height: 300
21 21
nodeAlignment: right
22 22
prefix: '('
23 23
suffix: ' genes)'
24 24
---
25 25
sankey-beta
26
-This study, FL Tier 1, 2
26
+This study, New Tier 1, 2
27
+New Tier 1, FL Tier 1, 2
27 28
This study, FL Tier 2,
28
-Other FL studies, FL Tier 1, 66
29
-Other FL studies, FL Tier 2, 50
29
+This study, New Tier 2,
30
+New Tier 2, FL Tier 2,
31
+Other studies, FL Tier 1, 66
32
+Other studies, FL Tier 2, 50
30 33
```
31 34
32 35
papers/pasqualucciInactivationPRDM1BLIMP12006a.md
... ...
@@ -15,17 +15,20 @@ config:
15 15
sankey:
16 16
showValues: true
17 17
linkColor: target
18
- width: 300
18
+ width: 600
19 19
height: 300
20 20
nodeAlignment: right
21 21
prefix: '('
22 22
suffix: ' genes)'
23 23
---
24 24
sankey-beta
25
-This study, DLBCL Tier 1, 1
25
+This study, New Tier 1, 1
26
+New Tier 1, DLBCL Tier 1, 1
26 27
This study, DLBCL Tier 2,
27
-Other DLBCL studies, DLBCL Tier 1, 128
28
-Other DLBCL studies, DLBCL Tier 2, 198
28
+This study, New Tier 2,
29
+New Tier 2, DLBCL Tier 2,
30
+Other studies, DLBCL Tier 1, 128
31
+Other studies, DLBCL Tier 2, 198
29 32
```
30 33
31 34
papers/reddyGeneticFunctionalDrivers2017.md
... ...
@@ -15,17 +15,20 @@ config:
15 15
sankey:
16 16
showValues: true
17 17
linkColor: target
18
- width: 300
18
+ width: 600
19 19
height: 300
20 20
nodeAlignment: right
21 21
prefix: '('
22 22
suffix: ' genes)'
23 23
---
24 24
sankey-beta
25
-This study, DLBCL Tier 1, 7
25
+This study, New Tier 1, 7
26
+New Tier 1, DLBCL Tier 1, 7
26 27
This study, DLBCL Tier 2, 53
27
-Other DLBCL studies, DLBCL Tier 1, 128
28
-Other DLBCL studies, DLBCL Tier 2, 198
28
+This study, New Tier 2, 53
29
+New Tier 2, DLBCL Tier 2, 53
30
+Other studies, DLBCL Tier 1, 128
31
+Other studies, DLBCL Tier 2, 198
29 32
```
30 33
31 34
papers/reichelFlowSortingExome2015a.md
... ...
@@ -15,17 +15,20 @@ config:
15 15
sankey:
16 16
showValues: true
17 17
linkColor: target
18
- width: 300
18
+ width: 600
19 19
height: 300
20 20
nodeAlignment: right
21 21
prefix: '('
22 22
suffix: ' genes)'
23 23
---
24 24
sankey-beta
25
-This study, PMBL Tier 1, 11
25
+This study, New Tier 1, 11
26
+New Tier 1, PMBL Tier 1, 11
26 27
This study, PMBL Tier 2, 18
27
-Other PMBL studies, PMBL Tier 1, 76
28
-Other PMBL studies, PMBL Tier 2, 82
28
+This study, New Tier 2, 18
29
+New Tier 2, PMBL Tier 2, 18
30
+Other studies, PMBL Tier 1, 76
31
+Other studies, PMBL Tier 2, 82
29 32
```
30 33
31 34
papers/richterRecurrentMutationID32012a.md
... ...
@@ -15,17 +15,20 @@ config:
15 15
sankey:
16 16
showValues: true
17 17
linkColor: target
18
- width: 300
18
+ width: 600
19 19
height: 300
20 20
nodeAlignment: right
21 21
prefix: '('
22 22
suffix: ' genes)'
23 23
---
24 24
sankey-beta
25
-This study, BL Tier 1, 5
25
+This study, New Tier 1, 5
26
+New Tier 1, BL Tier 1, 5
26 27
This study, BL Tier 2,
27
-Other BL studies, BL Tier 1, 29
28
-Other BL studies, BL Tier 2, 157
28
+This study, New Tier 2,
29
+New Tier 2, BL Tier 2,
30
+Other studies, BL Tier 1, 29
31
+Other studies, BL Tier 2, 157
29 32
```
30 33
31 34
papers/ritzRecurrentMutationsSTAT62009a.md
... ...
@@ -15,17 +15,20 @@ config:
15 15
sankey:
16 16
showValues: true
17 17
linkColor: target
18
- width: 300
18
+ width: 600
19 19
height: 300
20 20
nodeAlignment: right
21 21
prefix: '('
22 22
suffix: ' genes)'
23 23
---
24 24
sankey-beta
25
-This study, PMBL Tier 1, 1
25
+This study, New Tier 1, 1
26
+New Tier 1, PMBL Tier 1, 1
26 27
This study, PMBL Tier 2,
27
-Other PMBL studies, PMBL Tier 1, 76
28
-Other PMBL studies, PMBL Tier 2, 82
28
+This study, New Tier 2,
29
+New Tier 2, PMBL Tier 2,
30
+Other studies, PMBL Tier 1, 76
31
+Other studies, PMBL Tier 2, 82
29 32
```
30 33
31 34
papers/rossiAlterationBIRC3Multiple2011a.md
... ...
@@ -15,17 +15,20 @@ config:
15 15
sankey:
16 16
showValues: true
17 17
linkColor: target
18
- width: 300
18
+ width: 600
19 19
height: 300
20 20
nodeAlignment: right
21 21
prefix: '('
22 22
suffix: ' genes)'
23 23
---
24 24
sankey-beta
25
-This study, MZL Tier 1, 4
25
+This study, New Tier 1, 4
26
+New Tier 1, MZL Tier 1, 4
26 27
This study, MZL Tier 2, 1
27
-Other MZL studies, MZL Tier 1, 42
28
-Other MZL studies, MZL Tier 2, 74
28
+This study, New Tier 2, 1
29
+New Tier 2, MZL Tier 2, 1
30
+Other studies, MZL Tier 1, 42
31
+Other studies, MZL Tier 2, 74
29 32
```
30 33
31 34
papers/rossiCodingGenomeSplenic2012c.md
... ...
@@ -8,52 +8,55 @@ bibliography: 'morinlab.bib'
8 8
9 9
|Entity| Tier 1 genes| Tier 2 genes|
10 10
|:-:|:-:|:-:|
11
-|DLBCL|12|2|
12 11
|MZL|10|11|
12
+|DLBCL|12|2|
13 13
```mermaid
14 14
---
15 15
config:
16 16
sankey:
17 17
showValues: true
18 18
linkColor: target
19
- width: 300
19
+ width: 600
20 20
height: 300
21 21
nodeAlignment: right
22 22
prefix: '('
23 23
suffix: ' genes)'
24 24
---
25 25
sankey-beta
26
-This study, MZL Tier 1, 10
26
+This study, New Tier 1, 10
27
+New Tier 1, MZL Tier 1, 10
27 28
This study, MZL Tier 2, 11
28
-Other MZL studies, MZL Tier 1, 42
29
-Other MZL studies, MZL Tier 2, 74
29
+This study, New Tier 2, 11
30
+New Tier 2, MZL Tier 2, 11
31
+Other studies, MZL Tier 1, 42
32
+Other studies, MZL Tier 2, 74
30 33
```
31 34
32 35
33 36
## Novel genes reported in this study
34 37
35
-|New gene|DLBCL tier|MZL tier|
38
+|New gene|MZL tier|DLBCL tier|
36 39
|:-|:-:|:-:|
37 40
|[ARID1A](ARID1A)|1 |1 |
38
-|[CD79A](CD79A)| |2 |
41
+|[CD79A](CD79A)|2 | |
39 42
|[DTX1](DTX1)|1 |1 |
40
-|[EGR1](EGR1)| |2 |
41
-|[EGR2](EGR2)| |2 |
43
+|[EGR1](EGR1)|2 | |
44
+|[EGR2](EGR2)|2 | |
42 45
|[EP300](EP300)|1 |1 |
43
-|[GPS2](GPS2)| |2 |
46
+|[GPS2](GPS2)|2 | |
44 47
|[HIST1H2AG](HIST1H2AG)|2 |2 |
45
-|[HIST1H2BK](HIST1H2BK)|1 |2 |
48
+|[HIST1H2BK](HIST1H2BK)|2 |1 |
46 49
|[KMT2D](KMT2D)|1 |1 |
47
-|[MCRS1](MCRS1)| |2 |
48
-|[MSL2](MSL2)| |2 |
50
+|[MCRS1](MCRS1)|2 | |
51
+|[MSL2](MSL2)|2 | |
49 52
|[NOTCH1](NOTCH1)|1 |1 |
50 53
|[NOTCH2](NOTCH2)|1 |1 |
51 54
|[SIN3A](SIN3A)|1 |1 |
52 55
|[SPEN](SPEN)|1 |1 |
53
-|[SWAP70](SWAP70)| |2 |
56
+|[SWAP70](SWAP70)|2 | |
54 57
|[TBL1XR1](TBL1XR1)|1 |1 |
55 58
|[TP53](TP53)|1 |1 |
56
-|[TRRAP](TRRAP)|1 |2 |
59
+|[TRRAP](TRRAP)|2 |1 |
57 60
|[WAC](WAC)|2 |2 |
58 61
59 62
# Details
papers/rushtonGeneticEvolutionaryPatterns2020.md
... ...
@@ -15,17 +15,20 @@ config:
15 15
sankey:
16 16
showValues: true
17 17
linkColor: target
18
- width: 300
18
+ width: 600
19 19
height: 300
20 20
nodeAlignment: right
21 21
prefix: '('
22 22
suffix: ' genes)'
23 23
---
24 24
sankey-beta
25
-This study, DLBCL Tier 1, 1
25
+This study, New Tier 1, 1
26
+New Tier 1, DLBCL Tier 1, 1
26 27
This study, DLBCL Tier 2,
27
-Other DLBCL studies, DLBCL Tier 1, 128
28
-Other DLBCL studies, DLBCL Tier 2, 198
28
+This study, New Tier 2,
29
+New Tier 2, DLBCL Tier 2,
30
+Other studies, DLBCL Tier 1, 128
31
+Other studies, DLBCL Tier 2, 198
29 32
```
30 33
31 34
papers/russler-germainMutationsAssociatedProgression2023b.md
... ...
@@ -15,17 +15,20 @@ config:
15 15
sankey:
16 16
showValues: true
17 17
linkColor: target
18
- width: 300
18
+ width: 600
19 19
height: 300
20 20
nodeAlignment: right
21 21
prefix: '('
22 22
suffix: ' genes)'
23 23
---
24 24
sankey-beta
25
-This study, FL Tier 1, 1
25
+This study, New Tier 1, 1
26
+New Tier 1, FL Tier 1, 1
26 27
This study, FL Tier 2, 19
27
-Other FL studies, FL Tier 1, 66
28
-Other FL studies, FL Tier 2, 50
28
+This study, New Tier 2, 19
29
+New Tier 2, FL Tier 2, 19
30
+Other studies, FL Tier 1, 66
31
+Other studies, FL Tier 2, 50
29 32
```
30 33
31 34
papers/sarkozyMutationalLandscapeGray2021a.md
... ...
@@ -15,17 +15,20 @@ config:
15 15
sankey:
16 16
showValues: true
17 17
linkColor: target
18
- width: 300
18
+ width: 600
19 19
height: 300
20 20
nodeAlignment: right
21 21
prefix: '('
22 22
suffix: ' genes)'
23 23
---
24 24
sankey-beta
25
-This study, PMBL Tier 1, 5
25
+This study, New Tier 1, 5
26
+New Tier 1, PMBL Tier 1, 5
26 27
This study, PMBL Tier 2, 6
27
-Other PMBL studies, PMBL Tier 1, 76
28
-Other PMBL studies, PMBL Tier 2, 82
28
+This study, New Tier 2, 6
29
+New Tier 2, PMBL Tier 2, 6
30
+Other studies, PMBL Tier 1, 76
31
+Other studies, PMBL Tier 2, 82
29 32
```
30 33
31 34
papers/schmitzBurkittLymphomaPathogenesis2012.md
... ...
@@ -16,17 +16,20 @@ config:
16 16
sankey:
17 17
showValues: true
18 18
linkColor: target
19
- width: 300
19
+ width: 600
20 20
height: 300
21 21
nodeAlignment: right
22 22
prefix: '('
23 23
suffix: ' genes)'
24 24
---
25 25
sankey-beta
26
-This study, BL Tier 1, 4
26
+This study, New Tier 1, 4
27
+New Tier 1, BL Tier 1, 4
27 28
This study, BL Tier 2, 16
28
-Other BL studies, BL Tier 1, 29
29
-Other BL studies, BL Tier 2, 157
29
+This study, New Tier 2, 16
30
+New Tier 2, BL Tier 2, 16
31
+Other studies, BL Tier 1, 29
32
+Other studies, BL Tier 2, 157
30 33
```
31 34
32 35
papers/schmitzGeneticsPathogenesisDiffuse2018a.md
... ...
@@ -15,17 +15,20 @@ config:
15 15
sankey:
16 16
showValues: true
17 17
linkColor: target
18
- width: 300
18
+ width: 600
19 19
height: 300
20 20
nodeAlignment: right
21 21
prefix: '('
22 22
suffix: ' genes)'
23 23
---
24 24
sankey-beta
25
-This study, DLBCL Tier 1, 7
25
+This study, New Tier 1, 7
26
+New Tier 1, DLBCL Tier 1, 7
26 27
This study, DLBCL Tier 2, 9
27
-Other DLBCL studies, DLBCL Tier 1, 128
28
-Other DLBCL studies, DLBCL Tier 2, 198
28
+This study, New Tier 2, 9
29
+New Tier 2, DLBCL Tier 2, 9
30
+Other studies, DLBCL Tier 1, 128
31
+Other studies, DLBCL Tier 2, 198
29 32
```
30 33
31 34
papers/schmitzTNFAIP3A20Tumor2009a.md
... ...
@@ -15,17 +15,20 @@ config:
15 15
sankey:
16 16
showValues: true
17 17
linkColor: target
18
- width: 300
18
+ width: 600
19 19
height: 300
20 20
nodeAlignment: right
21 21
prefix: '('
22 22
suffix: ' genes)'
23 23
---
24 24
sankey-beta
25
-This study, PMBL Tier 1, 1
25
+This study, New Tier 1, 1
26
+New Tier 1, PMBL Tier 1, 1
26 27
This study, PMBL Tier 2,
27
-Other PMBL studies, PMBL Tier 1, 76
28
-Other PMBL studies, PMBL Tier 2, 82
28
+This study, New Tier 2,
29
+New Tier 2, PMBL Tier 2,
30
+Other studies, PMBL Tier 1, 76
31
+Other studies, PMBL Tier 2, 82
29 32
```
30 33
31 34
papers/schneiderAlterationsCD58Gene2015a.md
... ...
@@ -15,17 +15,20 @@ config:
15 15
sankey:
16 16
showValues: true
17 17
linkColor: target
18
- width: 300
18
+ width: 600
19 19
height: 300
20 20
nodeAlignment: right
21 21
prefix: '('
22 22
suffix: ' genes)'
23 23
---
24 24
sankey-beta
25
-This study, PMBL Tier 1, 1
25
+This study, New Tier 1, 1
26
+New Tier 1, PMBL Tier 1, 1
26 27
This study, PMBL Tier 2,
27
-Other PMBL studies, PMBL Tier 1, 76
28
-Other PMBL studies, PMBL Tier 2, 82
28
+This study, New Tier 2,
29
+New Tier 2, PMBL Tier 2,
30
+Other studies, PMBL Tier 1, 76
31
+Other studies, PMBL Tier 2, 82
29 32
```
30 33
31 34
papers/schollMutationsRegionFAS2007.md
... ...
@@ -15,17 +15,20 @@ config:
15 15
sankey:
16 16
showValues: true
17 17
linkColor: target
18
- width: 300
18
+ width: 600
19 19
height: 300
20 20
nodeAlignment: right
21 21
prefix: '('
22 22
suffix: ' genes)'
23 23
---
24 24
sankey-beta
25
-This study, DLBCL Tier 1, 1
25
+This study, New Tier 1, 1
26
+New Tier 1, DLBCL Tier 1, 1
26 27
This study, DLBCL Tier 2,
27
-Other DLBCL studies, DLBCL Tier 1, 128
28
-Other DLBCL studies, DLBCL Tier 2, 198
28
+This study, New Tier 2,
29
+New Tier 2, DLBCL Tier 2,
30
+Other studies, DLBCL Tier 1, 128
31
+Other studies, DLBCL Tier 2, 198
29 32
```
30 33
31 34
papers/shinBRAFV600EMAP2K12015.md
... ...
@@ -15,17 +15,20 @@ config:
15 15
sankey:
16 16
showValues: true
17 17
linkColor: target
18
- width: 300
18
+ width: 600
19 19
height: 300
20 20
nodeAlignment: right
21 21
prefix: '('
22 22
suffix: ' genes)'
23 23
---
24 24
sankey-beta
25
-This study, DLBCL Tier 1,
25
+This study, New Tier 1,
26
+New Tier 1, DLBCL Tier 1,
26 27
This study, DLBCL Tier 2, 1
27
-Other DLBCL studies, DLBCL Tier 1, 128
28
-Other DLBCL studies, DLBCL Tier 2, 198
28
+This study, New Tier 2, 1
29
+New Tier 2, DLBCL Tier 2, 1
30
+Other studies, DLBCL Tier 1, 128
31
+Other studies, DLBCL Tier 2, 198
29 32
```
30 33
31 34
papers/spinaGeneticsNodalMarginal2016b.md
... ...
@@ -15,17 +15,20 @@ config:
15 15
sankey:
16 16
showValues: true
17 17
linkColor: target
18
- width: 300
18
+ width: 600
19 19
height: 300
20 20
nodeAlignment: right
21 21
prefix: '('
22 22
suffix: ' genes)'
23 23
---
24 24
sankey-beta
25
-This study, MZL Tier 1, 8
25
+This study, New Tier 1, 8
26
+New Tier 1, MZL Tier 1, 8
26 27
This study, MZL Tier 2, 23
27
-Other MZL studies, MZL Tier 1, 42
28
-Other MZL studies, MZL Tier 2, 74
28
+This study, New Tier 2, 23
29
+New Tier 2, MZL Tier 2, 23
30
+Other studies, MZL Tier 1, 42
31
+Other studies, MZL Tier 2, 74
29 32
```
30 33
31 34
papers/tanakaFrequentIncidenceSomatic1992.md
... ...
@@ -15,17 +15,20 @@ config:
15 15
sankey:
16 16
showValues: true
17 17
linkColor: target
18
- width: 300
18
+ width: 600
19 19
height: 300
20 20
nodeAlignment: right
21 21
prefix: '('
22 22
suffix: ' genes)'
23 23
---
24 24
sankey-beta
25
-This study, DLBCL Tier 1, 1
25
+This study, New Tier 1, 1
26
+New Tier 1, DLBCL Tier 1, 1
26 27
This study, DLBCL Tier 2,
27
-Other DLBCL studies, DLBCL Tier 1, 128
28
-Other DLBCL studies, DLBCL Tier 2, 198
28
+This study, New Tier 2,
29
+New Tier 2, DLBCL Tier 2,
30
+Other studies, DLBCL Tier 1, 128
31
+Other studies, DLBCL Tier 2, 198
29 32
```
30 33
31 34
papers/thomasGeneticSubgroupsInform2023.md
... ...
@@ -15,17 +15,20 @@ config:
15 15
sankey:
16 16
showValues: true
17 17
linkColor: target
18
- width: 300
18
+ width: 600
19 19
height: 300
20 20
nodeAlignment: right
21 21
prefix: '('
22 22
suffix: ' genes)'
23 23
---
24 24
sankey-beta
25
-This study, BL Tier 1, 2
25
+This study, New Tier 1, 2
26
+New Tier 1, BL Tier 1, 2
26 27
This study, BL Tier 2, 3
27
-Other BL studies, BL Tier 1, 29
28
-Other BL studies, BL Tier 2, 157
28
+This study, New Tier 2, 3
29
+New Tier 2, BL Tier 2, 3
30
+Other studies, BL Tier 1, 29
31
+Other studies, BL Tier 2, 157
29 32
```
30 33
31 34
papers/tiacciBRAFMutationsHairycell2011a.md
... ...
@@ -15,17 +15,20 @@ config:
15 15
sankey:
16 16
showValues: true
17 17
linkColor: target
18
- width: 300
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+ width: 600
19 19
height: 300
20 20
nodeAlignment: right
21 21
prefix: '('
22 22
suffix: ' genes)'
23 23
---
24 24
sankey-beta
25
-This study, DLBCL Tier 1, 1
25
+This study, New Tier 1, 1
26
+New Tier 1, DLBCL Tier 1, 1
26 27
This study, DLBCL Tier 2,
27
-Other DLBCL studies, DLBCL Tier 1, 128
28
-Other DLBCL studies, DLBCL Tier 2, 198
28
+This study, New Tier 2,
29
+New Tier 2, DLBCL Tier 2,
30
+Other studies, DLBCL Tier 1, 128
31
+Other studies, DLBCL Tier 2, 198
29 32
```
30 33
31 34
papers/tiacciPervasiveMutationsJAKSTAT2018b.md
... ...
@@ -15,17 +15,20 @@ config:
15 15
sankey:
16 16
showValues: true
17 17
linkColor: target
18
- width: 300
18
+ width: 600
19 19
height: 300
20 20
nodeAlignment: right
21 21
prefix: '('
22 22
suffix: ' genes)'
23 23
---
24 24
sankey-beta
25
-This study, PMBL Tier 1, 1
25
+This study, New Tier 1, 1
26
+New Tier 1, PMBL Tier 1, 1
26 27
This study, PMBL Tier 2, 9
27
-Other PMBL studies, PMBL Tier 1, 76
28
-Other PMBL studies, PMBL Tier 2, 82
28
+This study, New Tier 2, 9
29
+New Tier 2, PMBL Tier 2, 9
30
+Other studies, PMBL Tier 1, 76
31
+Other studies, PMBL Tier 2, 82
29 32
```
30 33
31 34
papers/troenNOTCH2MutationsMarginal2008.md
... ...
@@ -15,17 +15,20 @@ config:
15 15
sankey:
16 16
showValues: true
17 17
linkColor: target
18
- width: 300
18
+ width: 600
19 19
height: 300
20 20
nodeAlignment: right
21 21
prefix: '('
22 22
suffix: ' genes)'
23 23
---
24 24
sankey-beta
25
-This study, DLBCL Tier 1, 1
25
+This study, New Tier 1, 1
26
+New Tier 1, DLBCL Tier 1, 1
26 27
This study, DLBCL Tier 2,
27
-Other DLBCL studies, DLBCL Tier 1, 128
28
-Other DLBCL studies, DLBCL Tier 2, 198
28
+This study, New Tier 2,
29
+New Tier 2, DLBCL Tier 2,
30
+Other studies, DLBCL Tier 1, 128
31
+Other studies, DLBCL Tier 2, 198
29 32
```
30 33
31 34
papers/vandenbrandRecurrentMutationsGenes2017.md
... ...
@@ -15,17 +15,20 @@ config:
15 15
sankey:
16 16
showValues: true
17 17
linkColor: target
18
- width: 300
18
+ width: 600
19 19
height: 300
20 20
nodeAlignment: right
21 21
prefix: '('
22 22
suffix: ' genes)'
23 23
---
24 24
sankey-beta
25
-This study, MZL Tier 1,
25
+This study, New Tier 1,
26
+New Tier 1, MZL Tier 1,
26 27
This study, MZL Tier 2, 2
27
-Other MZL studies, MZL Tier 1, 42
28
-Other MZL studies, MZL Tier 2, 74
28
+This study, New Tier 2, 2
29
+New Tier 2, MZL Tier 2, 2
30
+Other studies, MZL Tier 1, 42
31
+Other studies, MZL Tier 2, 74
29 32
```
30 33
31 34
papers/viganoSomaticIL4RMutations2018b.md
... ...
@@ -15,17 +15,20 @@ config:
15 15
sankey:
16 16
showValues: true
17 17
linkColor: target
18
- width: 300
18
+ width: 600
19 19
height: 300
20 20
nodeAlignment: right
21 21
prefix: '('
22 22
suffix: ' genes)'
23 23
---
24 24
sankey-beta
25
-This study, PMBL Tier 1, 1
25
+This study, New Tier 1, 1
26
+New Tier 1, PMBL Tier 1, 1
26 27
This study, PMBL Tier 2,
27
-Other PMBL studies, PMBL Tier 1, 76
28
-Other PMBL studies, PMBL Tier 2, 82
28
+This study, New Tier 2,
29
+New Tier 2, PMBL Tier 2,
30
+Other studies, PMBL Tier 1, 76
31
+Other studies, PMBL Tier 2, 82
29 32
```
30 33
31 34
papers/wenigerMutationsTumorSuppressor2006a.md
... ...
@@ -15,17 +15,20 @@ config:
15 15
sankey:
16 16
showValues: true
17 17
linkColor: target
18
- width: 300
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+ width: 600
19 19
height: 300
20 20
nodeAlignment: right
21 21
prefix: '('
22 22
suffix: ' genes)'
23 23
---
24 24
sankey-beta
25
-This study, PMBL Tier 1, 1
25
+This study, New Tier 1, 1
26
+New Tier 1, PMBL Tier 1, 1
26 27
This study, PMBL Tier 2, 1
27
-Other PMBL studies, PMBL Tier 1, 76
28
-Other PMBL studies, PMBL Tier 2, 82
28
+This study, New Tier 2, 1
29
+New Tier 2, PMBL Tier 2, 1
30
+Other studies, PMBL Tier 1, 76
31
+Other studies, PMBL Tier 2, 82
29 32
```
30 33
31 34
papers/wienandGenomicAnalysesFlowsorted2019b.md
... ...
@@ -15,17 +15,20 @@ config:
15 15
sankey:
16 16
showValues: true
17 17
linkColor: target
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- width: 300
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+ width: 600
19 19
height: 300
20 20
nodeAlignment: right
21 21
prefix: '('
22 22
suffix: ' genes)'
23 23
---
24 24
sankey-beta
25
-This study, PMBL Tier 1, 4
25
+This study, New Tier 1, 4
26
+New Tier 1, PMBL Tier 1, 4
26 27
This study, PMBL Tier 2, 3
27
-Other PMBL studies, PMBL Tier 1, 76
28
-Other PMBL studies, PMBL Tier 2, 82
28
+This study, New Tier 2, 3
29
+New Tier 2, PMBL Tier 2, 3
30
+Other studies, PMBL Tier 1, 76
31
+Other studies, PMBL Tier 2, 82
29 32
```
30 33
31 34
papers/wildaInactivationARFMDM2p53Pathway2004.md
... ...
@@ -15,17 +15,20 @@ config:
15 15
sankey:
16 16
showValues: true
17 17
linkColor: target
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- width: 300
18
+ width: 600
19 19
height: 300
20 20
nodeAlignment: right
21 21
prefix: '('
22 22
suffix: ' genes)'
23 23
---
24 24
sankey-beta
25
-This study, BL Tier 1, 1
25
+This study, New Tier 1, 1
26
+New Tier 1, BL Tier 1, 1
26 27
This study, BL Tier 2,
27
-Other BL studies, BL Tier 1, 29
28
-Other BL studies, BL Tier 2, 157
28
+This study, New Tier 2,
29
+New Tier 2, BL Tier 2,
30
+Other studies, BL Tier 1, 29
31
+Other studies, BL Tier 2, 157
29 32
```
30 33
31 34
papers/wuGeneticHeterogeneityPrimary2016.md
... ...
@@ -15,17 +15,20 @@ config:
15 15
sankey:
16 16
showValues: true
17 17
linkColor: target
18
- width: 300
18
+ width: 600
19 19
height: 300
20 20
nodeAlignment: right
21 21
prefix: '('
22 22
suffix: ' genes)'
23 23
---
24 24
sankey-beta
25
-This study, MCL Tier 1, 1
25
+This study, New Tier 1, 1
26
+New Tier 1, MCL Tier 1, 1
26 27
This study, MCL Tier 2,
27
-Other MCL studies, MCL Tier 1, 23
28
-Other MCL studies, MCL Tier 2, 46
28
+This study, New Tier 2,
29
+New Tier 2, MCL Tier 2,
30
+Other studies, MCL Tier 1, 23
31
+Other studies, MCL Tier 2, 46
29 32
```
30 33
31 34
papers/yanBCRTLRSignaling2012a.md
... ...
@@ -15,17 +15,20 @@ config:
15 15
sankey:
16 16
showValues: true
17 17
linkColor: target
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- width: 300
18
+ width: 600
19 19
height: 300
20 20
nodeAlignment: right
21 21
prefix: '('
22 22
suffix: ' genes)'
23 23
---
24 24
sankey-beta
25
-This study, MZL Tier 1, 2
25
+This study, New Tier 1, 2
26
+New Tier 1, MZL Tier 1, 2
26 27
This study, MZL Tier 2,
27
-Other MZL studies, MZL Tier 1, 42
28
-Other MZL studies, MZL Tier 2, 74
28
+This study, New Tier 2,
29
+New Tier 2, MZL Tier 2,
30
+Other studies, MZL Tier 1, 42
31
+Other studies, MZL Tier 2, 74
29 32
```
30 33
31 34
papers/yildizActivatingSTAT6Mutations2015c.md
... ...
@@ -16,17 +16,20 @@ config:
16 16
sankey:
17 17
showValues: true
18 18
linkColor: target
19
- width: 300
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+ width: 600
20 20
height: 300
21 21
nodeAlignment: right
22 22
prefix: '('
23 23
suffix: ' genes)'
24 24
---
25 25
sankey-beta
26
-This study, DLBCL Tier 1, 1
27
-This study, DLBCL Tier 2,
28
-Other DLBCL studies, DLBCL Tier 1, 128
29
-Other DLBCL studies, DLBCL Tier 2, 198
26
+This study, New Tier 1, 1
27
+New Tier 1, FL Tier 1, 1
28
+This study, FL Tier 2,
29
+This study, New Tier 2,
30
+New Tier 2, FL Tier 2,
31
+Other studies, FL Tier 1, 66
32
+Other studies, FL Tier 2, 50
30 33
```
31 34
32 35
papers/zhangGeneticHeterogeneityDiffuse2013.md
... ...
@@ -15,17 +15,20 @@ config:
15 15
sankey:
16 16
showValues: true
17 17
linkColor: target
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- width: 300
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+ width: 600
19 19
height: 300
20 20
nodeAlignment: right
21 21
prefix: '('
22 22
suffix: ' genes)'
23 23
---
24 24
sankey-beta
25
-This study, DLBCL Tier 1, 11
25
+This study, New Tier 1, 11
26
+New Tier 1, DLBCL Tier 1, 11
26 27
This study, DLBCL Tier 2, 8
27
-Other DLBCL studies, DLBCL Tier 1, 128
28
-Other DLBCL studies, DLBCL Tier 2, 198
28
+This study, New Tier 2, 8
29
+New Tier 2, DLBCL Tier 2, 8
30
+Other studies, DLBCL Tier 1, 128
31
+Other studies, DLBCL Tier 2, 198
29 32
```
30 33
31 34
papers/zhangGenomicLandscapeMantle2014.md
... ...
@@ -15,17 +15,20 @@ config:
15 15
sankey:
16 16
showValues: true
17 17
linkColor: target
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- width: 300
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+ width: 600
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height: 300
20 20
nodeAlignment: right
21 21
prefix: '('
22 22
suffix: ' genes)'
23 23
---
24 24
sankey-beta
25
-This study, MCL Tier 1, 2
25
+This study, New Tier 1, 2
26
+New Tier 1, MCL Tier 1, 2
26 27
This study, MCL Tier 2, 26
27
-Other MCL studies, MCL Tier 1, 23
28
-Other MCL studies, MCL Tier 2, 46
28
+This study, New Tier 2, 26
29
+New Tier 2, MCL Tier 2, 26
30
+Other studies, MCL Tier 1, 23
31
+Other studies, MCL Tier 2, 46
29 32
```
30 33
31 34
papers/zhouSporadicEndemicBurkitt2019.md
... ...
@@ -15,17 +15,20 @@ config:
15 15
sankey:
16 16
showValues: true
17 17
linkColor: target
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- width: 300
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+ width: 600
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height: 300
20 20
nodeAlignment: right
21 21
prefix: '('
22 22
suffix: ' genes)'
23 23
---
24 24
sankey-beta
25
-This study, BL Tier 1,
25
+This study, New Tier 1,
26
+New Tier 1, BL Tier 1,
26 27
This study, BL Tier 2, 1
27
-Other BL studies, BL Tier 1, 29
28
-Other BL studies, BL Tier 2, 157
28
+This study, New Tier 2, 1
29
+New Tier 2, BL Tier 2, 1
30
+Other studies, BL Tier 1, 29
31
+Other studies, BL Tier 2, 157
29 32
```
30 33
31 34