DLBCL_genes.md
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@@ -95,7 +95,7 @@ link-citations: true
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|[MTOR](MTOR)|Tier 1 GE[@zhangGeneticHeterogeneityDiffuse2013]|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)|[@paneaWholeGenomeLandscape2019]||
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|[MYC](MYC)|Tier 1 GE[@pasqualucciHypermutationMultipleProtooncogenes2001a], FE[@giallongoIdentificationCmycOncogene1983], CE[@christieCMYCTranslocation142008]|[Pasqualucci et al](papers/pasqualucciHypermutationMultipleProtooncogenes2001a)|[@dunsCharacterizationDLBCLPMBL2021b; @jalladesExomeSequencingIdentifies2017; @johnstonCmycHypermutationBurkitt1992]||
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|[MYD88](MYD88)|Tier 1 GE[@ngoOncogenicallyActiveMYD882011a], FE[@ngoOncogenicallyActiveMYD882011a], CE[@guoSGK1MutationStatus2022b]|[Ngo et al](papers/ngoOncogenicallyActiveMYD882011a)|[@yanBCRTLRSignaling2012a]||
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-|[NFKBIA](NFKBIA)|Tier 1 GE[@lakeMutationsNFKBIAEncoding2009]|[Lake et al](papers/lakeMutationsNFKBIAEncoding2009)|[@russler-germainMutationsAssociatedProgression2023b; @wienandGenomicAnalysesFlowsorted2019b]||
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+|[NFKBIA](NFKBIA)|Tier 1 GE[@thomasMutationalAnalysisIkappaBalpha2004]|[Thomas et al](papers/thomasMutationalAnalysisIkappaBalpha2004)|[@russler-germainMutationsAssociatedProgression2023b; @wienandGenomicAnalysesFlowsorted2019b]||
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|[NFKBIE](NFKBIE)|Tier 1 GE[@morinGeneticLandscapesRelapsed2016]|[Morin et al](papers/morinGeneticLandscapesRelapsed2016)|[@mansouriFrequentNFKBIEDeletions2016; @pararajalingamCodingNoncodingDrivers2020]||
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|[NFKBIZ](NFKBIZ)|Tier 1 GE[@morinGeneticLandscapesRelapsed2016], FE[@arthurGenomewideDiscoverySomatic2018]|[Morin et al](papers/morinGeneticLandscapesRelapsed2016)|||
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|[NOL9](NOL9)|Tier 1 GE[@schmitzGeneticsPathogenesisDiffuse2018a]|[Schmitz et al](papers/schmitzGeneticsPathogenesisDiffuse2018a)|[@spinaGeneticsNodalMarginal2016b]||
morinlab.bib
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@@ -1,3 +1,21 @@
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+@article{thomasMutationalAnalysisIkappaBalpha2004,
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+ title = {Mutational Analysis of the {{IkappaBalpha}} Gene in Activated {{B}} Cell-like Diffuse Large {{B-cell}} Lymphoma},
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+ author = {Thomas, Roman K. and Wickenhauser, Claudia and Tawadros, Samir and Diehl, Volker and Küppers, Ralf and Wolf, Jürgen and Schmitz, Roland},
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+ date = {2004-07},
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+ journaltitle = {British Journal of Haematology},
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+ shortjournal = {Br J Haematol},
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+ volume = {126},
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+ number = {1},
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+ eprint = {15198731},
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+ eprinttype = {pmid},
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+ pages = {50--54},
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+ issn = {0007-1048},
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+ doi = {10.1111/j.1365-2141.2004.05000.x},
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+ abstract = {The lymphoma cells of the activated B cell-like (ABC-) subtype of diffuse large B-cell lymphoma (DLBCL) show constitutive activity of the transcription factor, nuclear factor kappaB (NFkappaB). We sought to determine whether mutations in the IkappaBalpha gene - the predominant inhibitor of NFkappaB - might play a role in the pathogenesis of ABC-DLBCL. All exons of the IkappaBalpha gene were directly sequenced from 10 cases of immunohistochemically classified ABC-DLBCL and from six non-ABC-DLBCL cases. Two novel polymorphisms were identified, based on their presence in tumour as well as non-tumour DNA of the respective patients: a duplication near the transcriptional start and a single nucleotide exchange in exon 1. A somatic missense mutation was identified in exon 3, in addition to a wild-type sequence in only one ABC-DLBCL case. Thus, also in this case no clonal biallelic inactivating mutation was present in the IkappaBalpha gene. We conclude that mutations in the IkappaBalpha gene do not play a dominant role in the pathogenesis of ABC-DLBCL.},
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+ langid = {english},
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+ keywords = {DNA Mutational Analysis,Humans,I-kappa B Proteins,Immunophenotyping,Lymphoma B-Cell,Lymphoma Large B-Cell Diffuse,NF-KappaB Inhibitor alpha,Polymorphism Genetic}
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+}
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+
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@article{qiuIRF8mutantCellLymphoma2024,
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title = {{{IRF8-mutant B}} Cell Lymphoma Evades Immunity through a {{CD74-dependent}} Deregulation of Antigen Processing and Presentation in {{MHCII}} Complexes},
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author = {Qiu, Zhijun and Khalife, Jihane and Ethiraj, Purushoth and Jaafar, Carine and Lin, An-Ping and Holder, Kenneth N. and Ritter, Jacob P. and Chiou, Lilly and Huelgas-Morales, Gabriela and Aslam, Sadia and Zhang, Zhao and Liu, Zhijie and Arya, Shailee and Gupta, Yogesh K. and Dahia, Patricia L. M. and Aguiar, Ricardo C. T.},