888b82eaf5a2054bcfba888811eb38b6729fa251
MCL_genes.md
| ... | ... | @@ -9,95 +9,95 @@ link-citations: true |
| 9 | 9 | |
| 10 | 10 |  |
| 11 | 11 | |
| 12 | -## Tier 1 MCL genes |
|
| 12 | +## Tier 1, high-confidence MCL genes |
|
| 13 | 13 | |
| 14 | 14 | ### *23 total* |
| 15 | 15 | |
| 16 | -|Gene|Tier| First MCL evidence | Other entities | |
|
| 17 | -|:-:|:-:|:--|:-| |
|
| 18 | -|[ATM](ATM)|1|[Bea et al](papers/beaLandscapeSomaticMutations2013)[@beaLandscapeSomaticMutations2013]|[@braggioGenomicAnalysisMarginal2012; @reddyGeneticFunctionalDrivers2017]| |
|
| 19 | -|[BIRC3](BIRC3)|1|[Bea et al](papers/beaLandscapeSomaticMutations2013)[@beaLandscapeSomaticMutations2013]|[@dunsCharacterizationDLBCLPMBL2021b; @rossiAlterationBIRC3Multiple2011a; @arthurGenomewideDiscoverySomatic2018]| |
|
| 20 | -|[CARD11](CARD11)|1|[Wu et al](papers/wuGeneticHeterogeneityPrimary2016)[@wuGeneticHeterogeneityPrimary2016]|[@yanBCRTLRSignaling2012a; @lenzOncogenicCARD11Mutations2008; @morinFrequentMutationHistonemodifying2011]| |
|
| 21 | -|[CCND1](CCND1)|1|[Bea et al](papers/beaLandscapeSomaticMutations2013)[@beaLandscapeSomaticMutations2013]|| |
|
| 22 | -|[DAZAP1](DAZAP1)|1|[Pararajalingam et al](papers/pararajalingamCodingNoncodingDrivers2020)[@pararajalingamCodingNoncodingDrivers2020]|| |
|
| 23 | -|[EWSR1](EWSR1)|1|[Pararajalingam et al](papers/pararajalingamCodingNoncodingDrivers2020)[@pararajalingamCodingNoncodingDrivers2020]|| |
|
| 24 | -|[HNRNPH1](HNRNPH1)|1|[Pararajalingam et al](papers/pararajalingamCodingNoncodingDrivers2020)[@pararajalingamCodingNoncodingDrivers2020]|| |
|
| 25 | -|[KMT2D](KMT2D)|1|[Bea et al](papers/beaLandscapeSomaticMutations2013)[@beaLandscapeSomaticMutations2013]|[@grandeGenomewideDiscoverySomatic2019; @rossiCodingGenomeSplenic2012c; @deschGenotypingCirculatingTumor2020; @morinFrequentMutationHistonemodifying2011]| |
|
| 26 | -|[MEF2B](MEF2B)|1|[Bea et al](papers/beaLandscapeSomaticMutations2013)[@beaLandscapeSomaticMutations2013]|[@morinFrequentMutationHistonemodifying2011]| |
|
| 27 | -|[NFKBIE](NFKBIE)|1|[Pararajalingam et al](papers/pararajalingamCodingNoncodingDrivers2020)[@pararajalingamCodingNoncodingDrivers2020]|[@mansouriFrequentNFKBIEDeletions2016; @morinGeneticLandscapesRelapsed2016]| |
|
| 28 | -|[NOTCH1](NOTCH1)|1|[Bea et al](papers/beaLandscapeSomaticMutations2013)[@beaLandscapeSomaticMutations2013]|[@loveGeneticLandscapeMutations2012; @pasqualucciAnalysisCodingGenome2011; @rossiCodingGenomeSplenic2012c]| |
|
| 29 | -|[NOTCH2](NOTCH2)|1|[Bea et al](papers/beaLandscapeSomaticMutations2013)[@beaLandscapeSomaticMutations2013]|[@zhangGeneticHeterogeneityDiffuse2013; @rossiCodingGenomeSplenic2012c]| |
|
| 30 | -|[NSD2](NSD2)|1|[Bea et al](papers/beaLandscapeSomaticMutations2013)[@beaLandscapeSomaticMutations2013]|[@zhangGeneticHeterogeneityDiffuse2013]| |
|
| 31 | -|[POT1](POT1)|1|[Zhang et al](papers/zhangGenomicLandscapeMantle2014)[@zhangGenomicLandscapeMantle2014]|| |
|
| 32 | -|[RB1](RB1)|1|[Zhang et al](papers/zhangGenomicLandscapeMantle2014)[@zhangGenomicLandscapeMantle2014]|[@morinMutationalStructuralAnalysis2013]| |
|
| 33 | -|[S1PR1](S1PR1)|1|[Pararajalingam et al](papers/pararajalingamCodingNoncodingDrivers2020)[@pararajalingamCodingNoncodingDrivers2020]|[@lohrDiscoveryPrioritizationSomatic2012a]| |
|
| 34 | -|[SMARCA4](SMARCA4)|1|[Nadeu et al](papers/nadeuGenomicEpigenomicInsights2020b)[@nadeuGenomicEpigenomicInsights2020b]|[@richterRecurrentMutationID32012a; @lohrDiscoveryPrioritizationSomatic2012a; @krysiakRecurrentSomaticMutations2017b]| |
|
| 35 | -|[SP140](SP140)|1|[Bea et al](papers/beaLandscapeSomaticMutations2013)[@beaLandscapeSomaticMutations2013]|| |
|
| 36 | -|[SYNE1](SYNE1)|1|[Nadeu et al](papers/nadeuGenomicEpigenomicInsights2020b)[@nadeuGenomicEpigenomicInsights2020b]|| |
|
| 37 | -|[TERT](TERT)|1|[Nadeu et al](papers/nadeuGenomicEpigenomicInsights2020b)[@nadeuGenomicEpigenomicInsights2020b]|| |
|
| 38 | -|[TLR2](TLR2)|1|[Bea et al](papers/beaLandscapeSomaticMutations2013)[@beaLandscapeSomaticMutations2013]|[@chapuyMolecularSubtypesDiffuse2018b]| |
|
| 39 | -|[TP53](TP53)|1|[Bea et al](papers/beaLandscapeSomaticMutations2013)[@beaLandscapeSomaticMutations2013]|[@tiacciPervasiveMutationsJAKSTAT2018b; @morinFrequentMutationHistonemodifying2011; @wildaInactivationARFMDM2p53Pathway2004; @rossiCodingGenomeSplenic2012c; @lohrDiscoveryPrioritizationSomatic2012a]| |
|
| 40 | -|[UBR5](UBR5)|1|[Pararajalingam et al](papers/pararajalingamCodingNoncodingDrivers2020)[@pararajalingamCodingNoncodingDrivers2020]|[@zhangGeneticHeterogeneityDiffuse2013]| |
|
| 16 | +|Gene|Summary| First MCL study | Other entities | QC result | |
|
| 17 | +|:-:|:--:|:-:|:-|:-| |
|
| 18 | +|[ATM](ATM)|Tier 1 GE[@beaLandscapeSomaticMutations2013], FE[@camachoATMGeneInactivation2002]|[Bea et al](papers/beaLandscapeSomaticMutations2013)|[@braggioGenomicAnalysisMarginal2012; @reddyGeneticFunctionalDrivers2017]|| |
|
| 19 | +|[BIRC3](BIRC3)|Tier 1 GE[@beaLandscapeSomaticMutations2013], aSHM|[Bea et al](papers/beaLandscapeSomaticMutations2013)|[@arthurGenomewideDiscoverySomatic2018; @dunsCharacterizationDLBCLPMBL2021; @rossiAlterationBIRC3Multiple2011]|| |
|
| 20 | +|[CARD11](CARD11)|Tier 1 GE[@wuGeneticHeterogeneityPrimary2016], FE[@lenzOncogenicCARD11Mutations2008]|[Wu et al](papers/wuGeneticHeterogeneityPrimary2016)|[@lenzOncogenicCARD11Mutations2008; @morinFrequentMutationHistonemodifying2011; @yanBCRTLRSignaling2012]|| |
|
| 21 | +|[CCND1](CCND1)|Tier 1 GE[@beaLandscapeSomaticMutations2013]|[Bea et al](papers/beaLandscapeSomaticMutations2013)||| |
|
| 22 | +|[DAZAP1](DAZAP1)|Tier 1 GE[@pararajalingamCodingNoncodingDrivers2020]|[Pararajalingam et al](papers/pararajalingamCodingNoncodingDrivers2020)||| |
|
| 23 | +|[EWSR1](EWSR1)|Tier 1 GE[@pararajalingamCodingNoncodingDrivers2020]|[Pararajalingam et al](papers/pararajalingamCodingNoncodingDrivers2020)||| |
|
| 24 | +|[HNRNPH1](HNRNPH1)|Tier 1 GE[@pararajalingamCodingNoncodingDrivers2020]|[Pararajalingam et al](papers/pararajalingamCodingNoncodingDrivers2020)||| |
|
| 25 | +|[KMT2D](KMT2D)|Tier 1 GE[@beaLandscapeSomaticMutations2013], FE[@zhangDisruptionKMT2DPerturbs2015]|[Bea et al](papers/beaLandscapeSomaticMutations2013)|[@deschGenotypingCirculatingTumor2020; @grandeGenomewideDiscoverySomatic2019; @morinFrequentMutationHistonemodifying2011; @rossiCodingGenomeSplenic2012]|| |
|
| 26 | +|[MEF2B](MEF2B)|Tier 1 GE[@beaLandscapeSomaticMutations2013], FE[@ponMEF2BMutationsNonHodgkin2015], aSHM|[Bea et al](papers/beaLandscapeSomaticMutations2013)|[@morinFrequentMutationHistonemodifying2011]|| |
|
| 27 | +|[NFKBIE](NFKBIE)|Tier 1 GE[@pararajalingamCodingNoncodingDrivers2020], FE[@mansouriFunctionalLossIkBe2015]|[Pararajalingam et al](papers/pararajalingamCodingNoncodingDrivers2020)|[@mansouriFrequentNFKBIEDeletions2016; @morinGeneticLandscapesRelapsed2016]|| |
|
| 28 | +|[NOTCH1](NOTCH1)|Tier 1 GE[@beaLandscapeSomaticMutations2013], FE[@ryanCellRegulomeLinks2017]|[Bea et al](papers/beaLandscapeSomaticMutations2013)|[@loveGeneticLandscapeMutations2012; @pasqualucciAnalysisCodingGenome2011; @rossiCodingGenomeSplenic2012]|| |
|
| 29 | +|[NOTCH2](NOTCH2)|Tier 1 GE[@beaLandscapeSomaticMutations2013], FE[@leeGainoffunctionMutationsCopy2009]|[Bea et al](papers/beaLandscapeSomaticMutations2013)|[@rossiCodingGenomeSplenic2012; @zhangGeneticHeterogeneityDiffuse2013]|| |
|
| 30 | +|[NSD2](NSD2)|Tier 1 GE[@beaLandscapeSomaticMutations2013]|[Bea et al](papers/beaLandscapeSomaticMutations2013)|[@zhangGeneticHeterogeneityDiffuse2013]|| |
|
| 31 | +|[POT1](POT1)|Tier 1 GE[@zhangGenomicLandscapeMantle2014]|[Zhang et al](papers/zhangGenomicLandscapeMantle2014)||| |
|
| 32 | +|[RB1](RB1)|Tier 1 GE[@zhangGenomicLandscapeMantle2014], FE[@pinyolInactivationRB1Mantlecell2007]|[Zhang et al](papers/zhangGenomicLandscapeMantle2014)|[@morinMutationalStructuralAnalysis2013]|| |
|
| 33 | +|[S1PR1](S1PR1)|Tier 1 GE[@pararajalingamCodingNoncodingDrivers2020]|[Pararajalingam et al](papers/pararajalingamCodingNoncodingDrivers2020)|[@lohrDiscoveryPrioritizationSomatic2012]|| |
|
| 34 | +|[SMARCA4](SMARCA4)|Tier 1 GE[@nadeuGenomicEpigenomicInsights2020b], FE[@fernandoFunctionalCharacterizationSMARCA42020]|[Nadeu et al](papers/nadeuGenomicEpigenomicInsights2020b)|[@krysiakRecurrentSomaticMutations2017; @reddyGeneticFunctionalDrivers2017; @richterRecurrentMutationID32012]|| |
|
| 35 | +|[SP140](SP140)|Tier 1 GE[@beaLandscapeSomaticMutations2013]|[Bea et al](papers/beaLandscapeSomaticMutations2013)||| |
|
| 36 | +|[SYNE1](SYNE1)|Tier 1 GE[@nadeuGenomicEpigenomicInsights2020b]|[Nadeu et al](papers/nadeuGenomicEpigenomicInsights2020b)||| |
|
| 37 | +|[TERT](TERT)|Tier 1 GE[@nadeuGenomicEpigenomicInsights2020b]|[Nadeu et al](papers/nadeuGenomicEpigenomicInsights2020b)||| |
|
| 38 | +|[TLR2](TLR2)|Tier 1 GE[@beaLandscapeSomaticMutations2013]|[Bea et al](papers/beaLandscapeSomaticMutations2013)|[@chapuyMolecularSubtypesDiffuse2018]|| |
|
| 39 | +|[TP53](TP53)|Tier 1 GE[@beaLandscapeSomaticMutations2013], FE[@katoUnderstandingFunctionstructureFunctionmutation2003]|[Bea et al](papers/beaLandscapeSomaticMutations2013)|[@morinFrequentMutationHistonemodifying2011; @rossiCodingGenomeSplenic2012; @tiacciPervasiveMutationsJAKSTAT2018; @wildaInactivationARFMDM2p53Pathway2004]|| |
|
| 40 | +|[UBR5](UBR5)|Tier 1 GE[@pararajalingamCodingNoncodingDrivers2020]|[Pararajalingam et al](papers/pararajalingamCodingNoncodingDrivers2020)|[@albuquerqueEnhancingKnowledgeDiscovery2017]|| |
|
| 41 | 41 | |
| 42 | -## Tier 2 MCL genes |
|
| 42 | +## Tier 2, low-confidence MCL genes |
|
| 43 | 43 | |
| 44 | 44 | ### *46 total* |
| 45 | 45 | |
| 46 | -|Gene|Tier| First MCL evidence | Other entities | |
|
| 47 | -|:-:|:-:|:--|:-| |
|
| 48 | -|[ABCA3](ABCA3)|2|[Bea et al](papers/beaLandscapeSomaticMutations2013)[@beaLandscapeSomaticMutations2013]|[@zhangGeneticHeterogeneityDiffuse2013]| |
|
| 49 | -|[ABCC9](ABCC9)|2|[Bea et al](papers/beaLandscapeSomaticMutations2013)[@beaLandscapeSomaticMutations2013]|| |
|
| 50 | -|[ANK2](ANK2)|2|[Zhang et al](papers/zhangGenomicLandscapeMantle2014)[@zhangGenomicLandscapeMantle2014]|[@zhangGeneticHeterogeneityDiffuse2013]| |
|
| 51 | -|[ARID1B](ARID1B)|2||[@reddyGeneticFunctionalDrivers2017]| |
|
| 52 | -|[ATP11C](ATP11C)|2|[Zhang et al](papers/zhangGenomicLandscapeMantle2014)[@zhangGenomicLandscapeMantle2014]|| |
|
| 53 | -|[B2M](B2M)|2|[Pararajalingam et al](papers/pararajalingamCodingNoncodingDrivers2020)[@pararajalingamCodingNoncodingDrivers2020]|[@morinFrequentMutationHistonemodifying2011; @reichelFlowSortingExome2015a]| |
|
| 54 | -|[BCOR](BCOR)|2|[Nadeu et al](papers/nadeuGenomicEpigenomicInsights2020b)[@nadeuGenomicEpigenomicInsights2020b]|[@jalladesExomeSequencingIdentifies2017]| |
|
| 55 | -|[CDH8](CDH8)|2|[Zhang et al](papers/zhangGenomicLandscapeMantle2014)[@zhangGenomicLandscapeMantle2014]|[@reddyGeneticFunctionalDrivers2017]| |
|
| 56 | -|[CHMP4C](CHMP4C)|2|[Bea et al](papers/beaLandscapeSomaticMutations2013)[@beaLandscapeSomaticMutations2013]|| |
|
| 57 | -|[COL11A1](COL11A1)|2|[Zhang et al](papers/zhangGenomicLandscapeMantle2014)[@zhangGenomicLandscapeMantle2014]|| |
|
| 58 | -|[COL16A1](COL16A1)|2|[Zhang et al](papers/zhangGenomicLandscapeMantle2014)[@zhangGenomicLandscapeMantle2014]|| |
|
| 59 | -|[CRYBG3](CRYBG3)|2|[Bea et al](papers/beaLandscapeSomaticMutations2013)[@beaLandscapeSomaticMutations2013]|| |
|
| 60 | -|[CTNNA2](CTNNA2)|2|[Zhang et al](papers/zhangGenomicLandscapeMantle2014)[@zhangGenomicLandscapeMantle2014]|| |
|
| 61 | -|[DCP1B](DCP1B)|2|[Bea et al](papers/beaLandscapeSomaticMutations2013)[@beaLandscapeSomaticMutations2013]|| |
|
| 62 | -|[DHDH](DHDH)|2|[Zhang et al](papers/zhangGenomicLandscapeMantle2014)[@zhangGenomicLandscapeMantle2014]|| |
|
| 63 | -|[DLC1](DLC1)|2|[Zhang et al](papers/zhangGenomicLandscapeMantle2014)[@zhangGenomicLandscapeMantle2014]|| |
|
| 64 | -|[DLGAP2](DLGAP2)|2|[Bea et al](papers/beaLandscapeSomaticMutations2013)[@beaLandscapeSomaticMutations2013]|| |
|
| 65 | -|[DNAJC6](DNAJC6)|2|[Bea et al](papers/beaLandscapeSomaticMutations2013)[@beaLandscapeSomaticMutations2013]|| |
|
| 66 | -|[EIF2AK4](EIF2AK4)|2|[Zhang et al](papers/zhangGenomicLandscapeMantle2014)[@zhangGenomicLandscapeMantle2014]|| |
|
| 67 | -|[ESX1](ESX1)|2|[Zhang et al](papers/zhangGenomicLandscapeMantle2014)[@zhangGenomicLandscapeMantle2014]|| |
|
| 68 | -|[FAT4](FAT4)|2|[Zhang et al](papers/zhangGenomicLandscapeMantle2014)[@zhangGenomicLandscapeMantle2014]|[@morinMutationalStructuralAnalysis2013; @parryWholeExomeSequencing2013]| |
|
| 69 | -|[GRIN2A](GRIN2A)|2|[Zhang et al](papers/zhangGenomicLandscapeMantle2014)[@zhangGenomicLandscapeMantle2014]|| |
|
| 70 | -|[HEPH](HEPH)|2|[Zhang et al](papers/zhangGenomicLandscapeMantle2014)[@zhangGenomicLandscapeMantle2014]|| |
|
| 71 | -|[KCNC2](KCNC2)|2|[Bea et al](papers/beaLandscapeSomaticMutations2013)[@beaLandscapeSomaticMutations2013]|| |
|
| 72 | -|[KIAA1671](KIAA1671)|2|[Bea et al](papers/beaLandscapeSomaticMutations2013)[@beaLandscapeSomaticMutations2013]|| |
|
| 73 | -|[KMT2C](KMT2C)|2|[Zhang et al](papers/zhangGenomicLandscapeMantle2014)[@zhangGenomicLandscapeMantle2014]|[@sarkozyMutationalLandscapeGray2021a; @zhangGeneticHeterogeneityDiffuse2013; @zhouSporadicEndemicBurkitt2019]| |
|
| 74 | -|[LUZP4](LUZP4)|2|[Bea et al](papers/beaLandscapeSomaticMutations2013)[@beaLandscapeSomaticMutations2013]|| |
|
| 75 | -|[MRGPRF](MRGPRF)|2|[Zhang et al](papers/zhangGenomicLandscapeMantle2014)[@zhangGenomicLandscapeMantle2014]|| |
|
| 76 | -|[NIN](NIN)|2|[Zhang et al](papers/zhangGenomicLandscapeMantle2014)[@zhangGenomicLandscapeMantle2014]|| |
|
| 77 | -|[OGDHL](OGDHL)|2|[Zhang et al](papers/zhangGenomicLandscapeMantle2014)[@zhangGenomicLandscapeMantle2014]|| |
|
| 78 | -|[PCDHB2](PCDHB2)|2|[Zhang et al](papers/zhangGenomicLandscapeMantle2014)[@zhangGenomicLandscapeMantle2014]|| |
|
| 79 | -|[PCSK2](PCSK2)|2|[Bea et al](papers/beaLandscapeSomaticMutations2013)[@beaLandscapeSomaticMutations2013]|| |
|
| 80 | -|[PDLIM3](PDLIM3)|2|[Bea et al](papers/beaLandscapeSomaticMutations2013)[@beaLandscapeSomaticMutations2013]|| |
|
| 81 | -|[PLXNB3](PLXNB3)|2|[Zhang et al](papers/zhangGenomicLandscapeMantle2014)[@zhangGenomicLandscapeMantle2014]|[@spinaGeneticsNodalMarginal2016b]| |
|
| 82 | -|[RGS4](RGS4)|2|[Bea et al](papers/beaLandscapeSomaticMutations2013)[@beaLandscapeSomaticMutations2013]|| |
|
| 83 | -|[ROBO2](ROBO2)|2|[Zhang et al](papers/zhangGenomicLandscapeMantle2014)[@zhangGenomicLandscapeMantle2014]|| |
|
| 84 | -|[SALL3](SALL3)|2|[Zhang et al](papers/zhangGenomicLandscapeMantle2014)[@zhangGenomicLandscapeMantle2014]|[@loveGeneticLandscapeMutations2012]| |
|
| 85 | -|[SI](SI)|2|[Zhang et al](papers/zhangGenomicLandscapeMantle2014)[@zhangGenomicLandscapeMantle2014]|| |
|
| 86 | -|[SLC17A6](SLC17A6)|2|[Bea et al](papers/beaLandscapeSomaticMutations2013)[@beaLandscapeSomaticMutations2013]|| |
|
| 87 | -|[SMARCB1](SMARCB1)|2|[Nadeu et al](papers/nadeuGenomicEpigenomicInsights2020b)[@nadeuGenomicEpigenomicInsights2020b]|| |
|
| 88 | -|[SMC1A](SMC1A)|2|[Zhang et al](papers/zhangGenomicLandscapeMantle2014)[@zhangGenomicLandscapeMantle2014]|| |
|
| 89 | -|[TBC1D26](TBC1D26)|2|[Zhang et al](papers/zhangGenomicLandscapeMantle2014)[@zhangGenomicLandscapeMantle2014]|| |
|
| 90 | -|[TNRC6B](TNRC6B)|2|[Bea et al](papers/beaLandscapeSomaticMutations2013)[@beaLandscapeSomaticMutations2013]|| |
|
| 91 | -|[TRPM6](TRPM6)|2|[Bea et al](papers/beaLandscapeSomaticMutations2013)[@beaLandscapeSomaticMutations2013]|| |
|
| 92 | -|[ZNF117](ZNF117)|2|[Zhang et al](papers/zhangGenomicLandscapeMantle2014)[@zhangGenomicLandscapeMantle2014]|| |
|
| 93 | -|[ZNF296](ZNF296)|2|[Zhang et al](papers/zhangGenomicLandscapeMantle2014)[@zhangGenomicLandscapeMantle2014]|| |
|
| 46 | +|Gene|Summary| First MCL study | Other entities | QC result | |
|
| 47 | +|:-:|:--:|:-:|:-|:-| |
|
| 48 | +|[ABCA3](ABCA3)|Tier 2 GE[@beaLandscapeSomaticMutations2013]|[Bea et al](papers/beaLandscapeSomaticMutations2013)|[@zhangGeneticHeterogeneityDiffuse2013]|| |
|
| 49 | +|[ABCC9](ABCC9)|Tier 2 GE[@beaLandscapeSomaticMutations2013]|[Bea et al](papers/beaLandscapeSomaticMutations2013)||| |
|
| 50 | +|[ANK2](ANK2)|Tier 2 GE[@zhangGenomicLandscapeMantle2014]|[Zhang et al](papers/zhangGenomicLandscapeMantle2014)|[@zhangGeneticHeterogeneityDiffuse2013]|| |
|
| 51 | +|[ARID1B](ARID1B)|Tier 2 GE[@]||[@reddyGeneticFunctionalDrivers2017]|| |
|
| 52 | +|[ATP11C](ATP11C)|Tier 2 GE[@zhangGenomicLandscapeMantle2014]|[Zhang et al](papers/zhangGenomicLandscapeMantle2014)||| |
|
| 53 | +|[B2M](B2M)|Tier 2 GE[@pararajalingamCodingNoncodingDrivers2020], FE[@challa-malladiCombinedGeneticInactivation2011]|[Pararajalingam et al](papers/pararajalingamCodingNoncodingDrivers2020)|[@morinFrequentMutationHistonemodifying2011; @reichelFlowSortingExome2015]|| |
|
| 54 | +|[BCOR](BCOR)|Tier 2 GE[@nadeuGenomicEpigenomicInsights2020b]|[Nadeu et al](papers/nadeuGenomicEpigenomicInsights2020b)|[@jalladesExomeSequencingIdentifies2017]|| |
|
| 55 | +|[CDH8](CDH8)|Tier 2 GE[@zhangGenomicLandscapeMantle2014]|[Zhang et al](papers/zhangGenomicLandscapeMantle2014)|[@reddyGeneticFunctionalDrivers2017]|| |
|
| 56 | +|[CHMP4C](CHMP4C)|Tier 2 GE[@beaLandscapeSomaticMutations2013]|[Bea et al](papers/beaLandscapeSomaticMutations2013)||| |
|
| 57 | +|[COL11A1](COL11A1)|Tier 2 GE[@zhangGenomicLandscapeMantle2014]|[Zhang et al](papers/zhangGenomicLandscapeMantle2014)||| |
|
| 58 | +|[COL16A1](COL16A1)|Tier 2 GE[@zhangGenomicLandscapeMantle2014]|[Zhang et al](papers/zhangGenomicLandscapeMantle2014)||| |
|
| 59 | +|[CRYBG3](CRYBG3)|Tier 2 GE[@beaLandscapeSomaticMutations2013]|[Bea et al](papers/beaLandscapeSomaticMutations2013)||| |
|
| 60 | +|[CTNNA2](CTNNA2)|Tier 2 GE[@zhangGenomicLandscapeMantle2014]|[Zhang et al](papers/zhangGenomicLandscapeMantle2014)||| |
|
| 61 | +|[DCP1B](DCP1B)|Tier 2 GE[@beaLandscapeSomaticMutations2013]|[Bea et al](papers/beaLandscapeSomaticMutations2013)||| |
|
| 62 | +|[DHDH](DHDH)|Tier 2 GE[@zhangGenomicLandscapeMantle2014]|[Zhang et al](papers/zhangGenomicLandscapeMantle2014)||| |
|
| 63 | +|[DLC1](DLC1)|Tier 2 GE[@zhangGenomicLandscapeMantle2014]|[Zhang et al](papers/zhangGenomicLandscapeMantle2014)||| |
|
| 64 | +|[DLGAP2](DLGAP2)|Tier 2 GE[@beaLandscapeSomaticMutations2013]|[Bea et al](papers/beaLandscapeSomaticMutations2013)||| |
|
| 65 | +|[DNAJC6](DNAJC6)|Tier 2 GE[@beaLandscapeSomaticMutations2013]|[Bea et al](papers/beaLandscapeSomaticMutations2013)||| |
|
| 66 | +|[EIF2AK4](EIF2AK4)|Tier 2 GE[@zhangGenomicLandscapeMantle2014]|[Zhang et al](papers/zhangGenomicLandscapeMantle2014)||| |
|
| 67 | +|[ESX1](ESX1)|Tier 2 GE[@zhangGenomicLandscapeMantle2014]|[Zhang et al](papers/zhangGenomicLandscapeMantle2014)||| |
|
| 68 | +|[FAT4](FAT4)|Tier 2 GE[@zhangGenomicLandscapeMantle2014]|[Zhang et al](papers/zhangGenomicLandscapeMantle2014)|[@morinMutationalStructuralAnalysis2013; @parryWholeExomeSequencing2013]|| |
|
| 69 | +|[GRIN2A](GRIN2A)|Tier 2 GE[@zhangGenomicLandscapeMantle2014]|[Zhang et al](papers/zhangGenomicLandscapeMantle2014)||| |
|
| 70 | +|[HEPH](HEPH)|Tier 2 GE[@zhangGenomicLandscapeMantle2014]|[Zhang et al](papers/zhangGenomicLandscapeMantle2014)||| |
|
| 71 | +|[KCNC2](KCNC2)|Tier 2 GE[@beaLandscapeSomaticMutations2013]|[Bea et al](papers/beaLandscapeSomaticMutations2013)||| |
|
| 72 | +|[KIAA1671](KIAA1671)|Tier 2 GE[@beaLandscapeSomaticMutations2013]|[Bea et al](papers/beaLandscapeSomaticMutations2013)||| |
|
| 73 | +|[KMT2C](KMT2C)|Tier 2 GE[@zhangGenomicLandscapeMantle2014]|[Zhang et al](papers/zhangGenomicLandscapeMantle2014)|[@sarkozyMutationalLandscapeGray2021; @zhangGeneticHeterogeneityDiffuse2013; @zhouSporadicEndemicBurkitt2019]|| |
|
| 74 | +|[LUZP4](LUZP4)|Tier 2 GE[@beaLandscapeSomaticMutations2013]|[Bea et al](papers/beaLandscapeSomaticMutations2013)||| |
|
| 75 | +|[MRGPRF](MRGPRF)|Tier 2 GE[@zhangGenomicLandscapeMantle2014]|[Zhang et al](papers/zhangGenomicLandscapeMantle2014)||| |
|
| 76 | +|[NIN](NIN)|Tier 2 GE[@zhangGenomicLandscapeMantle2014]|[Zhang et al](papers/zhangGenomicLandscapeMantle2014)||| |
|
| 77 | +|[OGDHL](OGDHL)|Tier 2 GE[@zhangGenomicLandscapeMantle2014]|[Zhang et al](papers/zhangGenomicLandscapeMantle2014)||| |
|
| 78 | +|[PCDHB2](PCDHB2)|Tier 2 GE[@zhangGenomicLandscapeMantle2014]|[Zhang et al](papers/zhangGenomicLandscapeMantle2014)||| |
|
| 79 | +|[PCSK2](PCSK2)|Tier 2 GE[@beaLandscapeSomaticMutations2013]|[Bea et al](papers/beaLandscapeSomaticMutations2013)||| |
|
| 80 | +|[PDLIM3](PDLIM3)|Tier 2 GE[@beaLandscapeSomaticMutations2013]|[Bea et al](papers/beaLandscapeSomaticMutations2013)||| |
|
| 81 | +|[PLXNB3](PLXNB3)|Tier 2 GE[@zhangGenomicLandscapeMantle2014]|[Zhang et al](papers/zhangGenomicLandscapeMantle2014)|[@spinaGeneticsNodalMarginal2016]|| |
|
| 82 | +|[RGS4](RGS4)|Tier 2 GE[@beaLandscapeSomaticMutations2013]|[Bea et al](papers/beaLandscapeSomaticMutations2013)||| |
|
| 83 | +|[ROBO2](ROBO2)|Tier 2 GE[@zhangGenomicLandscapeMantle2014]|[Zhang et al](papers/zhangGenomicLandscapeMantle2014)||| |
|
| 84 | +|[SALL3](SALL3)|Tier 2 GE[@zhangGenomicLandscapeMantle2014]|[Zhang et al](papers/zhangGenomicLandscapeMantle2014)|[@loveGeneticLandscapeMutations2012]|| |
|
| 85 | +|[SI](SI)|Tier 2 GE[@zhangGenomicLandscapeMantle2014]|[Zhang et al](papers/zhangGenomicLandscapeMantle2014)||| |
|
| 86 | +|[SLC17A6](SLC17A6)|Tier 2 GE[@beaLandscapeSomaticMutations2013]|[Bea et al](papers/beaLandscapeSomaticMutations2013)||| |
|
| 87 | +|[SMARCB1](SMARCB1)|Tier 2 GE[@nadeuGenomicEpigenomicInsights2020b]|[Nadeu et al](papers/nadeuGenomicEpigenomicInsights2020b)||| |
|
| 88 | +|[SMC1A](SMC1A)|Tier 2 GE[@zhangGenomicLandscapeMantle2014]|[Zhang et al](papers/zhangGenomicLandscapeMantle2014)||| |
|
| 89 | +|[TBC1D26](TBC1D26)|Tier 2 GE[@zhangGenomicLandscapeMantle2014]|[Zhang et al](papers/zhangGenomicLandscapeMantle2014)||| |
|
| 90 | +|[TNRC6B](TNRC6B)|Tier 2 GE[@beaLandscapeSomaticMutations2013]|[Bea et al](papers/beaLandscapeSomaticMutations2013)||| |
|
| 91 | +|[TRPM6](TRPM6)|Tier 2 GE[@beaLandscapeSomaticMutations2013]|[Bea et al](papers/beaLandscapeSomaticMutations2013)||| |
|
| 92 | +|[ZNF117](ZNF117)|Tier 2 GE[@zhangGenomicLandscapeMantle2014]|[Zhang et al](papers/zhangGenomicLandscapeMantle2014)||| |
|
| 93 | +|[ZNF296](ZNF296)|Tier 2 GE[@zhangGenomicLandscapeMantle2014]|[Zhang et al](papers/zhangGenomicLandscapeMantle2014)||| |
|
| 94 | 94 | |
| 95 | -## Tier 3 MCL genes |
|
| 95 | +## Tier 3, retired MCL genes |
|
| 96 | 96 | |
| 97 | 97 | ### *0 total* |
| 98 | 98 | |
| 99 | -|Gene|Tier| First MCL evidence | Other entities | |
|
| 100 | -|:-:|:-:|:--|:-| |
|
| 99 | +|Gene|Summary| First MCL study | Other entities | QC result | |
|
| 100 | +|:-:|:--:|:-:|:-|:-| |
|
| 101 | 101 | |
| 102 | 102 | |
| 103 | 103 | # References |