Changes in 898ded7: add incidence

				HVCN1.md
			
          @@ -25,16 +25,8 @@ timeline

           ## Mutation incidence in large patient cohorts (GAMBL reanalysis)

          -|Entity|source               |frequency (%)|

          -|:------:|:---------------------:|:-------------:|

          -|DLBCL |GAMBL genomes        |3.06         |

          -|DLBCL |Schmitz cohort       |1.91         |

          -|DLBCL |Reddy cohort         |2.30         |

          -|DLBCL |Chapuy cohort        |3.42         |

          -|FL    |GAMBL genomes        |6.47         |

          -|BL    |GAMBL genomes+capture|0.92         |

          -|BL    |Thomas cohort        |0.80         |

          -|BL    |Panea cohort         |2.00         |

          +[[include:DLBCL_HVCN1.md]]

          +[[include:FL_HVCN1.md]]

           ## Mutation pattern and selective pressure estimates

				IKZF3.md
			
          @@ -21,20 +21,13 @@ timeline

           |Entity|Tier|Description                           |

           |:------:|:----:|--------------------------------------|

          -|![BL](images/icons/BL_tier2.png)    |2-a | aSHM target; Although recurrent, the relevance of mutations in BL is tenuous [@paneaWholeGenomeLandscape2019]|

          -|![DLBCL](images/icons/DLBCL_tier1.png) |1-a | aSHM target and high-confidence DLBCL gene            [@morinMutationalStructuralAnalysis2013]|

          +|![BL](images/icons/BL_tier2.png)    |2 | aSHM target; Although recurrent, the relevance of mutations in BL is tenuous [@paneaWholeGenomeLandscape2019]|

          +|![DLBCL](images/icons/DLBCL_tier1.png) |1 | aSHM target and high-confidence DLBCL gene            [@morinMutationalStructuralAnalysis2013]|

           ## Mutation incidence in large patient cohorts (GAMBL reanalysis)

          -|Entity|source               |frequency (%)|

          -|:------:|:---------------------:|:-------------:|

          -|BL    |GAMBL genomes+capture|1.62         |

          -|BL    |Thomas cohort        |0.80         |

          -|BL    |Panea cohort         |3.00         |

          -|DLBCL |GAMBL genomes        |4.78         |

          -|DLBCL |Schmitz cohort       |4.47         |

          -|DLBCL |Reddy cohort         |3.90         |

          -|DLBCL |Chapuy cohort        |4.27         |

          +[[include:DLBCL_IKZF3.md]]

          +[[include:BL_IKZF3.md]]

           ## Mutation pattern and selective pressure estimates

				IL4R.md
			
          @@ -26,12 +26,7 @@ timeline

           ## Mutation incidence in large patient cohorts (GAMBL reanalysis)

          -|Entity|source        |frequency (%)|

          -|:------:|:--------------:|:-------------:|

          -|DLBCL |GAMBL genomes |2.68         |

          -|DLBCL |Schmitz cohort|2.13         |

          -|DLBCL |Reddy cohort  |2.50         |

          -|DLBCL |Chapuy cohort |3.85         |

          +[[include:DLBCL_IL4R.md]]

           ## Mutation pattern and selective pressure estimates

          @@ -69,4 +64,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/I

           <!-- DLBCL: dunsCharacterizationDLBCLPMBL2021b -->

           <!-- PMBL: viganoSomaticIL4RMutations2018b -->

          -## References

          \ No newline at end of file

          +## References

...	...	@@ -25,16 +25,8 @@ timeline
25	25
26	26	## Mutation incidence in large patient cohorts (GAMBL reanalysis)
27	27
28		-\|Entity\|source \|frequency (%)\|
29		-\|:------:\|:---------------------:\|:-------------:\|
30		-\|DLBCL \|GAMBL genomes \|3.06 \|
31		-\|DLBCL \|Schmitz cohort \|1.91 \|
32		-\|DLBCL \|Reddy cohort \|2.30 \|
33		-\|DLBCL \|Chapuy cohort \|3.42 \|
34		-\|FL \|GAMBL genomes \|6.47 \|
35		-\|BL \|GAMBL genomes+capture\|0.92 \|
36		-\|BL \|Thomas cohort \|0.80 \|
37		-\|BL \|Panea cohort \|2.00 \|
	28	+[[include:DLBCL_HVCN1.md]]
	29	+[[include:FL_HVCN1.md]]
38	30
39	31	## Mutation pattern and selective pressure estimates
40	32

...	...	@@ -21,20 +21,13 @@ timeline
21	21
22	22	\|Entity\|Tier\|Description \|
23	23	\|:------:\|:----:\|--------------------------------------\|
24		-\|![BL](images/icons/BL_tier2.png) \|2-a \| aSHM target; Although recurrent, the relevance of mutations in BL is tenuous [@paneaWholeGenomeLandscape2019]\|
25		-\|![DLBCL](images/icons/DLBCL_tier1.png) \|1-a \| aSHM target and high-confidence DLBCL gene [@morinMutationalStructuralAnalysis2013]\|
	24	+\|![BL](images/icons/BL_tier2.png) \|2 \| aSHM target; Although recurrent, the relevance of mutations in BL is tenuous [@paneaWholeGenomeLandscape2019]\|
	25	+\|![DLBCL](images/icons/DLBCL_tier1.png) \|1 \| aSHM target and high-confidence DLBCL gene [@morinMutationalStructuralAnalysis2013]\|
26	26
27	27	## Mutation incidence in large patient cohorts (GAMBL reanalysis)
28	28
29		-\|Entity\|source \|frequency (%)\|
30		-\|:------:\|:---------------------:\|:-------------:\|
31		-\|BL \|GAMBL genomes+capture\|1.62 \|
32		-\|BL \|Thomas cohort \|0.80 \|
33		-\|BL \|Panea cohort \|3.00 \|
34		-\|DLBCL \|GAMBL genomes \|4.78 \|
35		-\|DLBCL \|Schmitz cohort \|4.47 \|
36		-\|DLBCL \|Reddy cohort \|3.90 \|
37		-\|DLBCL \|Chapuy cohort \|4.27 \|
	29	+[[include:DLBCL_IKZF3.md]]
	30	+[[include:BL_IKZF3.md]]
38	31
39	32	## Mutation pattern and selective pressure estimates
40	33

...	...	@@ -26,12 +26,7 @@ timeline
26	26
27	27	## Mutation incidence in large patient cohorts (GAMBL reanalysis)
28	28
29		-\|Entity\|source \|frequency (%)\|
30		-\|:------:\|:--------------:\|:-------------:\|
31		-\|DLBCL \|GAMBL genomes \|2.68 \|
32		-\|DLBCL \|Schmitz cohort\|2.13 \|
33		-\|DLBCL \|Reddy cohort \|2.50 \|
34		-\|DLBCL \|Chapuy cohort \|3.85 \|
	29	+[[include:DLBCL_IL4R.md]]
35	30
36	31	## Mutation pattern and selective pressure estimates
37	32
...	...	@@ -69,4 +64,4 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/I
69	64	<!-- DLBCL: dunsCharacterizationDLBCLPMBL2021b -->
70	65	<!-- PMBL: viganoSomaticIL4RMutations2018b -->
71	66
72		-## References
...	...	\ No newline at end of file
	0	+## References