Changes in 8a581e5: modify figure labels

				Supplemental_Methods_and_Results.md
			
          @@ -124,158 +124,101 @@ The FLAGS rank of DLBCL genes in Tier 1, 2 and 3 is compared. The genes in the C

           ![EIF2C4 - Average rating: &starf; &star; &star; &star; &star;](primary/Love_EIF2C4.svg)

          -![EML2](primary/Love_EML2_50816396.png)

          +![EML2 - Average rating: &starf; &star; &star; &star; &star;](primary/Love_EML2_50816396.png)

          -Average rating: &starf; &star; &star; &star; &star;

          -

          -### ENTPD3 - fail (insufficient support)

           ![ENTPD3](primary/Love_ENTPD3.svg)

           Average rating: &starf; &starf; &star; &star; &star;

          -<div style="page-break-after: always;"></div>

          -

          -### EPHB2 - fail (insufficient support)

           ![EPHB2](primary/Love_EPHB2.svg)

           Average rating: &starf; &starf; &star; &star; &star;

          -### FAM129B - fail (insufficient support)

          -

           ![FAM129B](primary/Love_FAM129B.svg)

           Average rating: &starf; &starf; &star; &star; &star;

          -<div style="page-break-after: always;"></div>

          -

          -### FGFR3 - fail (insufficient support)

           ![FGFR3](primary/Love_FGFR3.svg)

           Average rating: &starf; &star; &star; &star; &star;

          -### FTCD - fail (germline)

          -

           ![FTCD](primary/Love_FTCD.svg)

           Average rating: Germline

          -<div style="page-break-after: always;"></div>

          -

          -### GRIK5 - fail (insufficient support)

          -

           ![GRIK5](primary/Love_GRIK5.svg)

           Average rating: &starf; &star; &star; &star; &star;

          -### ICK - fail (insufficient support)

          -

           ![ICK](primary/Love_ICK.svg)

           Average rating: &starf; &star; &star; &star; &star;

          -<div style="page-break-after: always;"></div>

          -

          -### ITPR3 - fail (insufficient support)

           ![ITPR3](primary/Love_ITPR3.svg)

           Average rating: &starf; &star; &star; &star; &star;

          -### KIFC3 - fail (insufficient support)

          -

           ![KIFC3](primary/Love_KIFC3_2_56362071.png)

           Average rating: &starf; &star; &star; &star; &star;

          -<div style="page-break-after: always;"></div>

          -

          -### MAP3K6 - fail (insufficient support)

          -

           ![MAP3K6](primary/Love_MAP3K6.svg)

           Average rating: &starf; &star; &star; &star; &star;

          -

          -### MYH10 - fail (insufficient support)

          -

           ![MYH10](primary/Love_MYH10.svg)

           Average rating: &starf; &star; &star; &star; &star;

          -<div style="page-break-after: always;"></div> 

          -### NOTCH1 - fail (insufficient support)

           ![NOTCH1](primary/Love_NOTCH1.svg)

           Average rating: &starf; &star; &star; &star; &star;

          -### NRXN2 - fail (insufficient support)

           ![NRXN2](primary/Love_NRXN2.svg)

           Average rating: &starf; &star; &star; &star; &star;

          -<div style="page-break-after: always;"></div>

          -

          -### PC - fail (insufficient support)

           ![PC](primary/Love_PC_chr11_66374870.png)

           Average rating: &starf; &star; &star; &star; &star;

          -### POLRMT - fail (insufficient support)

          -

           ![POLRMT](primary/Love_POLRMT.svg)

           Average rating: &starf; &star; &star; &star; &star;

          -<div style="page-break-after: always;"></div>

          -

          -### POR - fail (insufficient support)

           ![POR](primary/Love_POR.svg)

           Average rating: &starf; &star; &star; &star; &star;

          -

          -### PRSS22 - fail (insufficient support)

          -

           ![PRSS22](primary/Love_PRSS22.svg)

           Average rating: &starf; &star; &star; &star; &star;

          -<div style="page-break-after: always;"></div>

          -

          -### PTPRN - fail (insufficient support)

          -

           ![PTPRN](primary/Love_PTPRN.svg)

           Average rating: &starf; &star; &star; &star; &star;

          -### RBP3 - fail (insufficient support)

          -

           ![RBP3](primary/Love_RBP3.svg)

          -Average rating: &starf; &star; &star; &star; &star;

          -

          -<div style="page-break-after: always;"></div>

          -

           ### RET - fail (insufficient support)

           ![RET](primary/Love_RET_42930092.png)

           Average rating: &starf; &star; &star; &star; &star;

          -### SALL3 - fail (insufficient support)

          -

           ![SALL3](primary/Love_SALL3.svg)

           Average rating: &starf; &starf; &star; &star; &star;

          @@ -401,76 +344,38 @@ Average rating: &starf; &starf; &star; &star; &star;

           Average rating: &starf; &starf; &star; &star; &star;

          -<div style="page-break-after: always;"></div>

          -

          -### CHD1 - fail (insufficient support)

          -

           ![CHD1](primary/Reddy_CHD1.svg)

           Average rating: &starf; &starf; &star; &star; &star;

          -<div style="page-break-after: always;"></div>

          -

          -### CHST2 - fail (insufficient support)

          -

           ![CHST2](primary/Reddy_CHST2.svg)

           Average rating: &starf; &starf; &star; &star; &star;

          -

          -<div style="page-break-after: always;"></div>

          -

          -### DCAF6 - fail (insufficient support)

          -

           ![DCAF6](primary/Reddy_DCAF6.svg)

           Average rating: &starf; &starf; &star; &star; &star;

          -<div style="page-break-after: always;"></div>

          -

          -### DICER1 - fail (insufficient support)

          -

           ![DICER1](primary/Reddy_DICER1.svg)

           Average rating: &starf; &starf; &star; &star; &star;

          -

          -<div style="page-break-after: always;"></div>

          -

          -### DNMT3A - fail (insufficient support)

          -

           ![DNMT3A](primary/Reddy_DNMT3A.svg)

           Average rating: &starf; &star; &star; &star; &star;

          -<div style="page-break-after: always;"></div>

          -

          -### GNAS - fail (insufficient support)

          -

           ![GNAS](primary/Reddy_GNAS.svg)

           Average rating: &starf; &starf; &star; &star; &star;

          -<div style="page-break-after: always;"></div>

          -

          -### HRAS - fail (insufficient support)

          -

           ![HRAS](primary/Reddy_HRAS.svg)

           Average rating: &starf; &starf; &star; &star; &star;

          -<div style="page-break-after: always;"></div>

          -

          -### LIN54 - fail (insufficient support)

          -

           ![LIN54](primary/Reddy_LIN54.svg)

           Average rating: &starf; &starf; &star; &star; &star;

          -<div style="page-break-after: always;"></div>

          -

          -### MAP4K4 - fail (insufficient support)

          -

           ![MAP4K4](primary/Reddy_MAP4K4.svg)

           Average rating: &starf; &starf; &star; &star; &star;

          @@ -758,18 +663,10 @@ Average rating: &starf; &starf; &starf; &star; &star;

           ![PIK3R1](primary/Panea_PIK3R1_1.svg)

          -### PXDNL - fail (insufficient support)

          -

           ![PXDNL](primary/Panea_PXDNL_1.svg)

          -### SNTB2 - fail (insufficient support)

          -

           ![SNTB2](primary/Panea_SNTB2_1.svg)

          -<div style="page-break-after: always;"></div>

          -

          -### WDR7 - fail (insufficient support)

          -

           ![WDR7](primary/Panea_WDR7_3.svg)

           <div style="page-break-after: always;"></div>

          @@ -783,31 +680,14 @@ Average rating: &starf; &starf; &starf; &star; &star;

           |:-:|:-:|:-:|:-:|:-:|:-:|:-:|

           |Exome|137|167|0|10|13| 6(21%)|

          -### DOCK1 - pass

          -

           ![DOCK1](primary/Chapuy_DOCK1.svg)

          -

          -<div style="page-break-after: always;"></div>

          -

          -### FUT5 - fail (insufficient support)

          -

           ![FUT5](primary/Chapuy_FUT5.svg)

          -<div style="page-break-after: always;"></div>

          -

          -### NLRP8 - fail (insufficient support)

          -

           ![NLRP8](primary/Chapuy_NLRP8.svg)

          -<div style="page-break-after: always;"></div>

          -

          -### PDE4DIP - fail (insufficient support)

          -

           ![PDE4DIP](primary/Chapuy_PDE4DIP.svg)

          -<div style="page-break-after: always;"></div>

          -

           ### Hübschmann *et al*, 2021 <a name="icgc"></a>

           *See also:* [IGV reports](https://www.bcgsc.ca/downloads/morinlab/GAMBL/MALY/)

          @@ -817,27 +697,12 @@ Average rating: &starf; &starf; &starf; &star; &star;

           |:-:|:-:|:-:|:-:|:-:|:-:|:-:|

           |WGS|179|2|0|5|31| 3 (7.7%)|

          -### IKBKE - pass

          -

           ![IKBKE](primary/ICGC_IKBKE.svg)

          -<div style="page-break-after: always;"></div>

          -

          -### GAK - fail (insufficient support)

          -

           ![GAK](primary/ICGC_GAK.svg)

          -<div style="page-break-after: always;"></div>

          -

          -### HLA-DQA1 - fail (insufficient support)

          -

           ![HLA-DQA1](primary/ICGC_HLA-DQA1.svg)

          -

          -<div style="page-break-after: always;"></div>

          -

          -### NR2F2 - fail (insufficient support)

          -

           ![NR2F2](primary/ICGC_NR2F2.svg)

           <div style="page-break-after: always;"></div>

...	...	@@ -124,158 +124,101 @@ The FLAGS rank of DLBCL genes in Tier 1, 2 and 3 is compared. The genes in the C
124	124
125	125	![EIF2C4 - Average rating: &starf; &star; &star; &star; &star;](primary/Love_EIF2C4.svg)
126	126
127		-![EML2](primary/Love_EML2_50816396.png)
	127	+![EML2 - Average rating: &starf; &star; &star; &star; &star;](primary/Love_EML2_50816396.png)
128	128
129		-Average rating: &starf; &star; &star; &star; &star;
130		-
131		-### ENTPD3 - fail (insufficient support)
132	129
133	130	![ENTPD3](primary/Love_ENTPD3.svg)
134	131
135	132	Average rating: &starf; &starf; &star; &star; &star;
136	133
137		-<div style="page-break-after: always;"></div>
138		-
139		-### EPHB2 - fail (insufficient support)
140	134
141	135	![EPHB2](primary/Love_EPHB2.svg)
142	136
143	137	Average rating: &starf; &starf; &star; &star; &star;
144	138
145		-### FAM129B - fail (insufficient support)
146		-
147	139	![FAM129B](primary/Love_FAM129B.svg)
148	140
149	141	Average rating: &starf; &starf; &star; &star; &star;
150	142
151		-<div style="page-break-after: always;"></div>
152		-
153		-### FGFR3 - fail (insufficient support)
154	143
155	144	![FGFR3](primary/Love_FGFR3.svg)
156	145
157	146	Average rating: &starf; &star; &star; &star; &star;
158	147
159		-### FTCD - fail (germline)
160		-
161	148	![FTCD](primary/Love_FTCD.svg)
162	149
163	150	Average rating: Germline
164	151
165		-<div style="page-break-after: always;"></div>
166		-
167		-### GRIK5 - fail (insufficient support)
168		-
169	152	![GRIK5](primary/Love_GRIK5.svg)
170	153
171	154	Average rating: &starf; &star; &star; &star; &star;
172	155
173		-### ICK - fail (insufficient support)
174		-
175	156	![ICK](primary/Love_ICK.svg)
176	157
177	158	Average rating: &starf; &star; &star; &star; &star;
178	159
179	160
180		-<div style="page-break-after: always;"></div>
181		-
182		-### ITPR3 - fail (insufficient support)
183	161
184	162	![ITPR3](primary/Love_ITPR3.svg)
185	163
186	164	Average rating: &starf; &star; &star; &star; &star;
187	165
188	166
189		-### KIFC3 - fail (insufficient support)
190		-
191	167	![KIFC3](primary/Love_KIFC3_2_56362071.png)
192	168
193	169	Average rating: &starf; &star; &star; &star; &star;
194	170
195	171
196		-<div style="page-break-after: always;"></div>
197		-
198		-### MAP3K6 - fail (insufficient support)
199		-
200	172	![MAP3K6](primary/Love_MAP3K6.svg)
201	173
202	174	Average rating: &starf; &star; &star; &star; &star;
203	175
204	176
205		-
206		-### MYH10 - fail (insufficient support)
207		-
208	177	![MYH10](primary/Love_MYH10.svg)
209	178
210	179	Average rating: &starf; &star; &star; &star; &star;
211	180
212		-<div style="page-break-after: always;"></div>
213	181
214		-### NOTCH1 - fail (insufficient support)
215	182
216	183	![NOTCH1](primary/Love_NOTCH1.svg)
217	184
218	185	Average rating: &starf; &star; &star; &star; &star;
219	186
220		-### NRXN2 - fail (insufficient support)
221	187
222	188	![NRXN2](primary/Love_NRXN2.svg)
223	189
224	190	Average rating: &starf; &star; &star; &star; &star;
225	191
226		-<div style="page-break-after: always;"></div>
227		-
228		-### PC - fail (insufficient support)
229	192
230	193	![PC](primary/Love_PC_chr11_66374870.png)
231	194
232	195	Average rating: &starf; &star; &star; &star; &star;
233	196
234		-### POLRMT - fail (insufficient support)
235		-
236	197	![POLRMT](primary/Love_POLRMT.svg)
237	198
238	199	Average rating: &starf; &star; &star; &star; &star;
239	200
240		-<div style="page-break-after: always;"></div>
241		-
242		-### POR - fail (insufficient support)
243	201
244	202	![POR](primary/Love_POR.svg)
245	203
246	204	Average rating: &starf; &star; &star; &star; &star;
247	205
248		-
249		-### PRSS22 - fail (insufficient support)
250		-
251	206	![PRSS22](primary/Love_PRSS22.svg)
252	207
253	208	Average rating: &starf; &star; &star; &star; &star;
254	209
255		-<div style="page-break-after: always;"></div>
256		-
257		-### PTPRN - fail (insufficient support)
258		-
259	210	![PTPRN](primary/Love_PTPRN.svg)
260	211
261	212	Average rating: &starf; &star; &star; &star; &star;
262	213
263		-### RBP3 - fail (insufficient support)
264		-
265	214	![RBP3](primary/Love_RBP3.svg)
266	215
267		-Average rating: &starf; &star; &star; &star; &star;
268		-
269		-<div style="page-break-after: always;"></div>
270		-
271	216	### RET - fail (insufficient support)
272	217
273	218	![RET](primary/Love_RET_42930092.png)
274	219
275	220	Average rating: &starf; &star; &star; &star; &star;
276	221
277		-### SALL3 - fail (insufficient support)
278		-
279	222	![SALL3](primary/Love_SALL3.svg)
280	223
281	224	Average rating: &starf; &starf; &star; &star; &star;
...	...	@@ -401,76 +344,38 @@ Average rating: &starf; &starf; &star; &star; &star;
401	344
402	345	Average rating: &starf; &starf; &star; &star; &star;
403	346
404		-<div style="page-break-after: always;"></div>
405		-
406		-### CHD1 - fail (insufficient support)
407		-
408	347	![CHD1](primary/Reddy_CHD1.svg)
409	348
410	349	Average rating: &starf; &starf; &star; &star; &star;
411	350
412		-<div style="page-break-after: always;"></div>
413		-
414		-### CHST2 - fail (insufficient support)
415		-
416	351	![CHST2](primary/Reddy_CHST2.svg)
417	352
418	353	Average rating: &starf; &starf; &star; &star; &star;
419	354
420		-
421		-<div style="page-break-after: always;"></div>
422		-
423		-### DCAF6 - fail (insufficient support)
424		-
425	355	![DCAF6](primary/Reddy_DCAF6.svg)
426	356
427	357	Average rating: &starf; &starf; &star; &star; &star;
428	358
429		-<div style="page-break-after: always;"></div>
430		-
431		-### DICER1 - fail (insufficient support)
432		-
433	359	![DICER1](primary/Reddy_DICER1.svg)
434	360
435	361	Average rating: &starf; &starf; &star; &star; &star;
436	362
437		-
438		-<div style="page-break-after: always;"></div>
439		-
440		-### DNMT3A - fail (insufficient support)
441		-
442	363	![DNMT3A](primary/Reddy_DNMT3A.svg)
443	364
444	365	Average rating: &starf; &star; &star; &star; &star;
445	366
446		-<div style="page-break-after: always;"></div>
447		-
448		-### GNAS - fail (insufficient support)
449		-
450	367	![GNAS](primary/Reddy_GNAS.svg)
451	368
452	369	Average rating: &starf; &starf; &star; &star; &star;
453	370
454		-<div style="page-break-after: always;"></div>
455		-
456		-### HRAS - fail (insufficient support)
457		-
458	371	![HRAS](primary/Reddy_HRAS.svg)
459	372
460	373	Average rating: &starf; &starf; &star; &star; &star;
461	374
462		-<div style="page-break-after: always;"></div>
463		-
464		-### LIN54 - fail (insufficient support)
465		-
466	375	![LIN54](primary/Reddy_LIN54.svg)
467	376
468	377	Average rating: &starf; &starf; &star; &star; &star;
469	378
470		-<div style="page-break-after: always;"></div>
471		-
472		-### MAP4K4 - fail (insufficient support)
473		-
474	379	![MAP4K4](primary/Reddy_MAP4K4.svg)
475	380
476	381	Average rating: &starf; &starf; &star; &star; &star;
...	...	@@ -758,18 +663,10 @@ Average rating: &starf; &starf; &starf; &star; &star;
758	663
759	664	![PIK3R1](primary/Panea_PIK3R1_1.svg)
760	665
761		-### PXDNL - fail (insufficient support)
762		-
763	666	![PXDNL](primary/Panea_PXDNL_1.svg)
764	667
765		-### SNTB2 - fail (insufficient support)
766		-
767	668	![SNTB2](primary/Panea_SNTB2_1.svg)
768	669
769		-<div style="page-break-after: always;"></div>
770		-
771		-### WDR7 - fail (insufficient support)
772		-
773	670	![WDR7](primary/Panea_WDR7_3.svg)
774	671
775	672	<div style="page-break-after: always;"></div>
...	...	@@ -783,31 +680,14 @@ Average rating: &starf; &starf; &starf; &star; &star;
783	680	\|:-:\|:-:\|:-:\|:-:\|:-:\|:-:\|:-:\|
784	681	\|Exome\|137\|167\|0\|10\|13\| 6(21%)\|
785	682
786		-### DOCK1 - pass
787		-
788	683	![DOCK1](primary/Chapuy_DOCK1.svg)
789	684
790		-
791		-<div style="page-break-after: always;"></div>
792		-
793		-### FUT5 - fail (insufficient support)
794		-
795	685	![FUT5](primary/Chapuy_FUT5.svg)
796	686
797		-<div style="page-break-after: always;"></div>
798		-
799		-### NLRP8 - fail (insufficient support)
800		-
801	687	![NLRP8](primary/Chapuy_NLRP8.svg)
802	688
803		-<div style="page-break-after: always;"></div>
804		-
805		-### PDE4DIP - fail (insufficient support)
806		-
807	689	![PDE4DIP](primary/Chapuy_PDE4DIP.svg)
808	690
809		-<div style="page-break-after: always;"></div>
810		-
811	691	### Hübschmann et al, 2021 <a name="icgc"></a>
812	692
813	693	See also: [IGV reports](https://www.bcgsc.ca/downloads/morinlab/GAMBL/MALY/)
...	...	@@ -817,27 +697,12 @@ Average rating: &starf; &starf; &starf; &star; &star;
817	697	\|:-:\|:-:\|:-:\|:-:\|:-:\|:-:\|:-:\|
818	698	\|WGS\|179\|2\|0\|5\|31\| 3 (7.7%)\|
819	699
820		-### IKBKE - pass
821		-
822	700	![IKBKE](primary/ICGC_IKBKE.svg)
823	701
824		-<div style="page-break-after: always;"></div>
825		-
826		-### GAK - fail (insufficient support)
827		-
828	702	![GAK](primary/ICGC_GAK.svg)
829	703
830		-<div style="page-break-after: always;"></div>
831		-
832		-### HLA-DQA1 - fail (insufficient support)
833		-
834	704	![HLA-DQA1](primary/ICGC_HLA-DQA1.svg)
835	705
836		-
837		-<div style="page-break-after: always;"></div>
838		-
839		-### NR2F2 - fail (insufficient support)
840		-
841	706	![NR2F2](primary/ICGC_NR2F2.svg)
842	707
843	708	<div style="page-break-after: always;"></div>