BL_tier1_sankey.md
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@@ -0,0 +1,43 @@
1
+
2
+
3
+```mermaid
4
+
5
+
6
+---
7
+config:
8
+ sankey:
9
+ showValues: false
10
+ linkColor: target
11
+ width: 800
12
+ height: 1000
13
+ nodeAlignment: right
14
+---
15
+sankey-beta
16
+
17
+exome, 2012 exome studies, 64
18
+2012 exome studies, Richter 2012, 5
19
+2012 exome studies, Love 2012, 59
20
+
21
+Richter 2012, Tier 1 BL genes, 5
22
+
23
+Love 2012, Tier 1 BL genes, 3
24
+
25
+RNA-seq, 2012 RNA-seq studies, 19
26
+2012 RNA-seq studies, Schmitz 2012, 19
27
+Schmitz 2012, Tier 1 BL genes, 3
28
+
29
+
30
+RNA-seq/exome, RNA-seq/exome studies,47
31
+RNA-seq/exome studies, Panea 2019, 47
32
+
33
+Panea 2019, Tier 1 BL genes, 4
34
+
35
+WGS,2019 WGS studies,13
36
+2019 WGS studies, Grande 2019, 13
37
+Grande 2019, Tier 1 BL genes, 8
38
+
39
+WGS, 2023 WGS studies, 3
40
+2023 WGS studies, Thomas 2023, 3
41
+
42
+Thomas 2023, Tier 1 BL genes, 2
43
+```
... ...
\ No newline at end of file
DLBCL_sankey.md
... ...
@@ -3,58 +3,68 @@
3 3
config:
4 4
sankey:
5 5
showValues: false
6
+ linkColor: target
7
+ width: 800
6 8
height: 1000
7 9
---
8 10
sankey-beta
9
-2001, pasqualucci 2001, 3
10
-pasqualucci 2001,DLBCL Tier 1, 3
11
-2017, reddy 2017, 60
12
-2017, albuquerque 2017, 3
13
-2018, schmitz 2018, 16
14
-2018, arthur 2018, 20
15
-2016, mareschal 2016, 2
16
-2016, morin 2016, 2
17
-2011, pasqualucci 2011a,7
18
-2011, pasqualucci 2011,2
19
-2011, morin 2011, 25
20
-2012, lohr 2012, 3
21
-2013, morin 2013, 40
22
-2013, zhang 2013, 19
23
-2018, chapuy 2018, 19
24
-2021, hubschmann 2021, 23
25
-2021, duns 2021, 14
26
-
27
-2020, pararajalingam 2020, 2
28
-
29
-pararajalingam 2020,DLBCL Tier 1, 2
30
-morin 2011,DLBCL Tier 1, 25
31
-lohr 2012,DLBCL Tier 1, 3
32
-duns 2021,DLBCL Tier 2, 8
33
-duns 2021,DLBCL Tier 1, 6
34
-pasqualucci 2011a,DLBCL Tier 1, 5
35
-pasqualucci 2011a,DLBCL Tier 2, 2
36
-pasqualucci 2011,DLBCL Tier 1, 2
37
-hubschmann 2021,DLBCL Tier 1, 4
38
-hubschmann 2021,DLBCL Tier 2, 19
39
-reddy 2017,DLBCL Tier 1, 10
40
-reddy 2017,DLBCL Tier 2, 50
41
-chapuy 2018,DLBCL Tier 2, 16
42
-chapuy 2018,DLBCL Tier 1, 3
43
-morin 2016,DLBCL Tier 1, 2
44
-morin 2013,DLBCL Tier 2, 29
45
-morin 2013,DLBCL Tier 1, 11
46
-zhang 2013,DLBCL Tier 1, 11
47
-zhang 2013,DLBCL Tier 2, 8
48
-mareschal 2016,DLBCL Tier 1, 2
49
-albuquerque 2017,DLBCL Tier 1, 3
50
-arthur 2018,DLBCL Tier 2, 12
51
-arthur 2018,DLBCL Tier 1, 8
52
-schmitz 2018,DLBCL Tier 2, 7
53
-schmitz 2018,DLBCL Tier 1, 9
54
-
55
-
56
-
57
-
58
-
59
-
60
-```
... ...
\ No newline at end of file
0
+Pasqualucci 2001, DLBCL Tier 1, 2
1
+Pasqualucci 2001, DLBCL Tier 2, 2
2
+Morin 2011, DLBCL Tier 1, 24
3
+Morin 2011, DLBCL Tier 2, 1
4
+Morin 2016, DLBCL Tier 1, 2
5
+Chapuy 2018, DLBCL Tier 1, 2
6
+Chapuy 2018, DLBCL Tier 2, 17
7
+Mareschal 2016, DLBCL Tier 1, 2
8
+Reddy 2017, DLBCL Tier 1, 7
9
+Reddy 2017, DLBCL Tier 2, 53
10
+Albuquerque 2017, DLBCL Tier 1, 3
11
+Lohr 2012, DLBCL Tier 1, 3
12
+Lohr 2012, DLBCL Tier 2, 1
13
+Pasqualucci 2011, DLBCL Tier 1, 2
14
+Hubschmann 2021, DLBCL Tier 1, 3
15
+Hubschmann 2021, DLBCL Tier 2, 20
16
+Pararajalingam 2020, DLBCL Tier 2, 2
17
+Morin 2013, DLBCL Tier 1, 11
18
+Morin 2013, DLBCL Tier 2, 29
19
+Arthur 2018, DLBCL Tier 1, 8
20
+Arthur 2018, DLBCL Tier 2, 12
21
+Schmitz 2018, DLBCL Tier 1, 7
22
+Schmitz 2018, DLBCL Tier 2, 9
23
+Pasqualucci 2011, DLBCL Tier 1, 3
24
+Pasqualucci 2011, DLBCL Tier 2, 4
25
+Zhang 2013, DLBCL Tier 1, 11
26
+Zhang 2013, DLBCL Tier 2, 8
27
+DLBCL, exome, 7
28
+exome, pasqualucci 2011, 7
29
+DLBCL, exome, 19
30
+exome, zhang 2013, 19
31
+DLBCL, WGS, 40
32
+WGS, morin 2013, 40
33
+DLBCL, exome, 16
34
+exome, schmitz 2018, 16
35
+DLBCL, WGS, 20
36
+WGS, arthur 2018, 20
37
+DLBCL, WGS, 23
38
+WGS, hubschmann 2021, 23
39
+DLBCL, WGS/exome, 2
40
+WGS/exome, pararajalingam 2020, 2
41
+DLBCL, exome, 2
42
+exome, pasqualucci 2011, 2
43
+DLBCL, exome, 4
44
+exome, lohr 2012, 4
45
+DLBCL, exome, 3
46
+exome, albuquerque 2017, 3
47
+DLBCL, exome, 60
48
+exome, reddy 2017, 60
49
+DLBCL, exome, 2
50
+exome, mareschal 2016, 2
51
+DLBCL, exome, 19
52
+exome, chapuy 2018, 19
53
+DLBCL, exome, 2
54
+exome, morin 2016, 2
55
+DLBCL, RNA-seq/WGS, 25
56
+RNA-seq/WGS, morin 2011, 25
57
+DLBCL, Sanger, 4
58
+Sanger, pasqualucci 2001, 4
59
+```
DLBCL_tier1_sankey.md
... ...
@@ -0,0 +1,85 @@
1
+
2
+
3
+```mermaid
4
+
5
+
6
+---
7
+config:
8
+ sankey:
9
+ showValues: false
10
+ linkColor: target
11
+ width: 800
12
+ height: 1000
13
+ nodeAlignment: right
14
+---
15
+sankey-beta
16
+
17
+RNA-seq/WGS, 2011, 25
18
+2011, morin 2011, 25
19
+morin 2011, Tier 1 DLBCL genes, 25
20
+
21
+exome, 2011, 9
22
+2011, pasqualucci 2011a, 7
23
+pasqualucci 2011a, Tier 1 DLBCL genes, 5
24
+
25
+2011, pasqualucci 2011b, 2
26
+pasqualucci 2011b, Tier 1 DLBCL genes, 2
27
+
28
+exome, 2012 exome studies, 4
29
+2012 exome studies, lohr 2012, 4
30
+
31
+lohr 2012, Tier 1 DLBCL genes, 3
32
+
33
+
34
+WGS, 2013 WGS studies, 40
35
+2013 WGS studies, morin 2013, 40
36
+
37
+morin 2013, Tier 1 DLBCL genes, 11
38
+
39
+exome, 2013 exome studies, 19
40
+2013 exome studies, zhang 2013, 19
41
+zhang 2013, Tier 1 DLBCL genes, 11
42
+
43
+
44
+
45
+exome, 2016 exome studies, 2
46
+2016 exome studies, mareschal 2016, 2
47
+mareschal 2016, Tier 1 DLBCL genes, 2
48
+
49
+exome, 2016 exome studies, 2
50
+2016 exome studies, morin 2016, 2
51
+morin 2016, Tier 1 DLBCL genes, 2
52
+
53
+2017 exome studies, albuquerque 2017, 3
54
+albuquerque 2017, Tier 1 DLBCL genes, 3
55
+
56
+exome, 2017 exome studies, 63
57
+2017 exome studies, reddy 2017, 60
58
+
59
+reddy 2017, Tier 1 DLBCL genes, 10
60
+
61
+exome, 2018 exome studies, 35
62
+2018 exome studies, schmitz 2018, 16
63
+
64
+schmitz 2018, Tier 1 DLBCL genes, 9
65
+
66
+2018 exome studies, chapuy 2018, 19
67
+
68
+chapuy 2018, Tier 1 DLBCL genes, 3
69
+
70
+WGS, 2018 WGS studies, 20
71
+2018 WGS studies, arthur 2018, 20
72
+
73
+arthur 2018, Tier 1 DLBCL genes, 8
74
+
75
+exome, 2020-exome, 2
76
+2020-exome, pararajalingam 2020, 2
77
+pararajalingam 2020, Tier 1 DLBCL genes, 2
78
+
79
+WGS, 2021-WGS, 23
80
+2021-WGS, hubschmann 2021, 23
81
+hubschmann 2021, Tier 1 DLBCL genes, 4
82
+
83
+
84
+
85
+```
FL_sankey.md
... ...
@@ -1,8 +1,4 @@
1
-
2
-
3 1
```mermaid
4
-
5
-
6 2
---
7 3
config:
8 4
sankey:
... ...
@@ -10,34 +6,28 @@ config:
10 6
linkColor: target
11 7
width: 800
12 8
height: 1000
13
- nodeAlignment: right
14 9
---
15 10
sankey-beta
16
-
17
-RNA-seq/exome, 2011, 17
18
-2011, Morin 2011, 15
19
-Morin 2011, Tier 1 FL genes, 14
20
-Morin 2011, Tier 2 FL genes, 1
21
-2011, Pasqualucci 2011b, 2
22
-Pasqualucci 2011b, Tier 1 FL genes, 2
23
-
24
-WGS, 2016 WGS, 2
25
-2016 WGS, Okosun 2016, 2
26
-Okosun 2016, Tier 1 FL genes, 2
27
-
28
-exome, 2017 exome, 22
29
-2017 exome, Krysiak 2017, 22
30
-Krysiak 2017, Tier 2 FL genes, 5
31
-Krysiak 2017, Tier 1 FL genes, 17
32
-
33
-WGS, 2021 WGS, 17
34
-2021 WGS, Hubschmann 2021, 17
35
-Hubschmann 2021, Tier 2 FL genes, 15
36
-Hubschmann 2021, Tier 1 FL genes, 2
37
-
38
-exome, 2023 exome, 20
39
-2023 exome, Russler-Germain 2023, 20
40
-Russler-Germain 2023, Tier 1 FL genes, 1
41
-Russler-Germain 2023, Tier 2 FL genes, 19
42
-
43
-```
... ...
\ No newline at end of file
0
+Russler-germain 2023, FL Tier 1, 1
1
+Russler-germain 2023, FL Tier 2, 19
2
+Hubschmann 2021, FL Tier 1, 2
3
+Hubschmann 2021, FL Tier 2, 15
4
+Pasqualucci 2011, FL Tier 1, 2
5
+Krysiak 2017, FL Tier 1, 17
6
+Krysiak 2017, FL Tier 2, 5
7
+Okosun 2016, FL Tier 1, 2
8
+Morin 2011, FL Tier 1, 14
9
+Morin 2011, FL Tier 2, 1
10
+FL, RNA-seq/WGS, 15
11
+RNA-seq/WGS, morin 2011, 15
12
+FL, exome, 22
13
+exome, krysiak 2017, 22
14
+FL, WGS, 2
15
+WGS, okosun 2016, 2
16
+FL, WGS, 17
17
+WGS, hubschmann 2021, 17
18
+FL, exome, 2
19
+exome, pasqualucci 2011, 2
20
+FL, exome, 20
21
+exome, russler 2023, 20
22
+```
all_sankey.md
... ...
@@ -0,0 +1,138 @@
1
+```mermaid
2
+---
3
+config:
4
+ sankey:
5
+ showValues: false
6
+ linkColor: target
7
+ width: 800
8
+ height: 1000
9
+---
10
+sankey-beta
11
+Pasqualucci 2001, DLBCL Tier 1, 2
12
+Pasqualucci 2001, DLBCL Tier 2, 2
13
+Morin 2011, DLBCL Tier 1, 24
14
+Morin 2011, DLBCL Tier 2, 1
15
+Morin 2016, DLBCL Tier 1, 2
16
+Chapuy 2018, DLBCL Tier 1, 2
17
+Chapuy 2018, DLBCL Tier 2, 17
18
+Mareschal 2016, DLBCL Tier 1, 2
19
+Reddy 2017, DLBCL Tier 1, 7
20
+Reddy 2017, DLBCL Tier 2, 53
21
+Albuquerque 2017, DLBCL Tier 1, 3
22
+Lohr 2012, DLBCL Tier 1, 3
23
+Lohr 2012, DLBCL Tier 2, 1
24
+Pasqualucci 2011, DLBCL Tier 1, 2
25
+Hubschmann 2021, DLBCL Tier 1, 3
26
+Hubschmann 2021, DLBCL Tier 2, 20
27
+Pararajalingam 2020, DLBCL Tier 2, 2
28
+Morin 2013, DLBCL Tier 1, 11
29
+Morin 2013, DLBCL Tier 2, 29
30
+Arthur 2018, DLBCL Tier 1, 8
31
+Arthur 2018, DLBCL Tier 2, 12
32
+Schmitz 2018, DLBCL Tier 1, 7
33
+Schmitz 2018, DLBCL Tier 2, 9
34
+Pasqualucci 2011, DLBCL Tier 1, 3
35
+Pasqualucci 2011, DLBCL Tier 2, 4
36
+Zhang 2013, DLBCL Tier 1, 11
37
+Zhang 2013, DLBCL Tier 2, 8
38
+Russler-germain 2023, FL Tier 1, 1
39
+Russler-germain 2023, FL Tier 2, 19
40
+Hubschmann 2021, FL Tier 1, 2
41
+Hubschmann 2021, FL Tier 2, 15
42
+Pasqualucci 2011, FL Tier 1, 2
43
+Krysiak 2017, FL Tier 1, 17
44
+Krysiak 2017, FL Tier 2, 5
45
+Okosun 2016, FL Tier 1, 2
46
+Morin 2011, FL Tier 1, 14
47
+Morin 2011, FL Tier 2, 1
48
+Richter 2012, BL Tier 1, 5
49
+Muppidi 2014, BL Tier 1, 1
50
+Muppidi 2014, BL Tier 2, 2
51
+Love 2012, BL Tier 1, 3
52
+Love 2012, BL Tier 2, 56
53
+Thomas 2023, BL Tier 1, 2
54
+Thomas 2023, BL Tier 2, 3
55
+Schmitz 2012, BL Tier 1, 3
56
+Schmitz 2012, BL Tier 2, 16
57
+Panea 2019, BL Tier 1, 4
58
+Panea 2019, BL Tier 2, 46
59
+Burkhardt 2022, BL Tier 2, 25
60
+Grande 2019, BL Tier 1, 9
61
+Grande 2019, BL Tier 2, 4
62
+Pararajalingam 2020, MCL Tier 1, 6
63
+Pararajalingam 2020, MCL Tier 2, 1
64
+Bea 2013, MCL Tier 1, 11
65
+Bea 2013, MCL Tier 2, 16
66
+Zhang 2014, MCL Tier 1, 2
67
+Zhang 2014, MCL Tier 2, 26
68
+Nadeu 2020, MCL Tier 1, 3
69
+Nadeu 2020, MCL Tier 2, 2
70
+DLBCL, exome, 7
71
+exome, pasqualucci 2011, 7
72
+DLBCL, exome, 19
73
+exome, zhang 2013, 19
74
+DLBCL, WGS, 40
75
+WGS, morin 2013, 40
76
+DLBCL, exome, 16
77
+exome, schmitz 2018, 16
78
+DLBCL, WGS, 20
79
+WGS, arthur 2018, 20
80
+DLBCL, WGS, 23
81
+WGS, hubschmann 2021, 23
82
+DLBCL, WGS/exome, 2
83
+WGS/exome, pararajalingam 2020, 2
84
+DLBCL, exome, 2
85
+exome, pasqualucci 2011, 2
86
+DLBCL, exome, 4
87
+exome, lohr 2012, 4
88
+DLBCL, exome, 3
89
+exome, albuquerque 2017, 3
90
+DLBCL, exome, 60
91
+exome, reddy 2017, 60
92
+DLBCL, exome, 2
93
+exome, mareschal 2016, 2
94
+DLBCL, exome, 19
95
+exome, chapuy 2018, 19
96
+DLBCL, exome, 2
97
+exome, morin 2016, 2
98
+DLBCL, RNA-seq/WGS, 25
99
+RNA-seq/WGS, morin 2011, 25
100
+DLBCL, Sanger, 4
101
+Sanger, pasqualucci 2001, 4
102
+FL, RNA-seq/WGS, 15
103
+RNA-seq/WGS, morin 2011, 15
104
+FL, exome, 22
105
+exome, krysiak 2017, 22
106
+FL, WGS, 2
107
+WGS, okosun 2016, 2
108
+FL, WGS, 17
109
+WGS, hubschmann 2021, 17
110
+FL, exome, 2
111
+exome, pasqualucci 2011, 2
112
+FL, exome, 20
113
+exome, russler 2023, 20
114
+BL, Sanger, 3
115
+Sanger, muppidi 2014, 3
116
+BL, exome, 59
117
+exome, love 2012, 59
118
+BL, RNA-seq/WGS/exome, 5
119
+RNA-seq/WGS/exome, richter 2012, 5
120
+BL, WGS, 13
121
+WGS, grande 2019, 13
122
+BL, RNA-seq, 19
123
+RNA-seq, schmitz 2012, 19
124
+BL, RNA-seq/exome, 50
125
+RNA-seq/exome, panea 2019, 50
126
+BL, WGS, 5
127
+WGS, thomas 2023, 5
128
+BL, panel, 25
129
+panel, burkhardt 2022, 25
130
+MCL, WGS/exome, 27
131
+WGS/exome, bea 2013, 27
132
+MCL, WGS/exome, 7
133
+WGS/exome, pararajalingam 2020, 7
134
+MCL, WGS, 5
135
+WGS, nadeu 2020, 5
136
+MCL, exome, 28
137
+exome, zhang 2014, 28
138
+```