91b9c35168e1063583d1a7c4234969cbab0d2658
BCL10.md
| ... | ... | @@ -27,7 +27,6 @@ timeline |
| 27 | 27 | ||1|high-confidence MZL gene[@spinaGeneticsNodalMarginal2016b]| |
| 28 | 28 | | |1 |high-confidence DLBCL gene[@morinFrequentMutationHistonemodifying2011] | |
| 29 | 29 | | |2 |relevance in FL not firmly established[@russler-germainMutationsAssociatedProgression2023b]| |
| 30 | -| |2 |relevance in BL not firmly established| |
|
| 31 | 30 | |
| 32 | 31 | ## Mutation incidence in large patient cohorts (GAMBL reanalysis) |
| 33 | 32 |
BIRC6.md
| ... | ... | @@ -25,7 +25,6 @@ timeline |
| 25 | 25 | ||1|high-confidence PMBL/cHL/GZL gene [@sarkozyMutationalLandscapeGray2021a]| |
| 26 | 26 | | |1 |high-confidence DLBCL gene [@reddyGeneticFunctionalDrivers2017]| |
| 27 | 27 | | |1 |high-confidence FL gene | |
| 28 | -| |2 |relevance in BL not firmly established| |
|
| 29 | 28 | |
| 30 | 29 | ## Mutation incidence in large patient cohorts (GAMBL reanalysis) |
| 31 | 30 |
CARD11.md
| ... | ... | @@ -26,7 +26,6 @@ timeline |
| 26 | 26 | | |1 |high-confidence FL gene [@morinFrequentMutationHistonemodifying2011]| |
| 27 | 27 | | |1 |high-confidence MCL gene [@wuGeneticHeterogeneityPrimary2016]| |
| 28 | 28 | |
| 29 | -||2|relevance in BL not firmly established| |
|
| 30 | 29 | ## Mutation incidence in large patient cohorts (GAMBL reanalysis) |
| 31 | 30 | |
| 32 | 31 | |Entity|source |frequency (%)| |
CD79B.md
| ... | ... | @@ -30,7 +30,7 @@ timeline |
| 30 | 30 | |:------:|:----:|--------------------------------------| |
| 31 | 31 | | |1 |high-confidence DLBCL gene [@morinFrequentMutationHistonemodifying2011]| |
| 32 | 32 | | |2 |relevance in FL not firmly established| |
| 33 | -| |2-F |Failed QC| |
|
| 33 | +| |2-F |Failed QC[@paneaWholeGenomeLandscape2019]| |
|
| 34 | 34 | |
| 35 | 35 | ## Mutation incidence in large patient cohorts (GAMBL reanalysis) |
| 36 | 36 |
EP300.md
| ... | ... | @@ -26,7 +26,6 @@ timeline |
| 26 | 26 | | |1 |high-confidence DLBCL gene [@pasqualucciInactivatingMutationsAcetyltransferase2011a]| |
| 27 | 27 | | |1 |high-confidence FL gene [@pasqualucciInactivatingMutationsAcetyltransferase2011a]| |
| 28 | 28 | |
| 29 | -||2|relevance in BL not firmly established| |
|
| 30 | 29 | ## Mutation incidence in large patient cohorts (GAMBL reanalysis) |
| 31 | 30 | |
| 32 | 31 | |Entity|source |frequency (%)| |
GRB2.md
| ... | ... | @@ -25,7 +25,6 @@ timeline |
| 25 | 25 | |:------:|:----:|--------------------------------------| |
| 26 | 26 | | |1 |high-confidence DLBCL gene [@pasqualucciAnalysisCodingGenome2011]| |
| 27 | 27 | |
| 28 | -||2|relevance in BL not firmly established| |
|
| 29 | 28 | ## Mutation incidence in large patient cohorts (GAMBL reanalysis) |
| 30 | 29 | |
| 31 | 30 | |Entity|source |frequency (%)| |
HIST1H1B.md
| ... | ... | @@ -23,7 +23,6 @@ timeline |
| 23 | 23 | |Entity|Tier|Description | |
| 24 | 24 | |:------:|:----:|--------------------------------------| |
| 25 | 25 | ||1|high-confidence PMBL/cHL/GZL gene[@sarkozyMutationalLandscapeGray2021a]| |
| 26 | -| |2 |relevance in BL not firmly established| |
|
| 27 | 26 | | |1 |high-confidence DLBCL gene [@chapuyMolecularSubtypesDiffuse2018b]| |
| 28 | 27 | | |1 |high-confidence FL gene [@krysiakRecurrentSomaticMutations2017b]| |
| 29 | 28 |
HIST1H1C.md
| ... | ... | @@ -30,7 +30,7 @@ timeline |
| 30 | 30 | ||1|high-confidence PMBL/cHL/GZL gene| |
| 31 | 31 | | |1 |high-confidence DLBCL gene [@morinFrequentMutationHistonemodifying2011]| |
| 32 | 32 | | |1 |high-confidence FL gene [@morinFrequentMutationHistonemodifying2011]| |
| 33 | -| |2-F |Failed QC| |
|
| 33 | +| |2-F |Failed QC[@paneaWholeGenomeLandscape2019]]| |
|
| 34 | 34 | |
| 35 | 35 | ## Mutation incidence in large patient cohorts (GAMBL reanalysis) |
| 36 | 36 |
HIST1H1D.md
| ... | ... | @@ -24,7 +24,6 @@ timeline |
| 24 | 24 | |:------:|:----:|--------------------------------------| |
| 25 | 25 | ||1|high-confidence PMBL/cHL/GZL gene| |
| 26 | 26 | ||2|relevance in MZL not firmly established[@jalladesExomeSequencingIdentifies2017]| |
| 27 | -| |2 |relevance in BL not firmly established| |
|
| 28 | 27 | | |1 |high-confidence DLBCL gene [@morinMutationalStructuralAnalysis2013]| |
| 29 | 28 | | |1 |high-confidence FL gene [@krysiakRecurrentSomaticMutations2017b]| |
| 30 | 29 |
HLA-A.md
| ... | ... | @@ -22,7 +22,6 @@ timeline |
| 22 | 22 | |Entity|Tier|Description | |
| 23 | 23 | |:------:|:----:|--------------------------------------| |
| 24 | 24 | ||2|relevance in PMBL/cHL/GZL not firmly established[@deschGenotypingCirculatingTumor2020]| |
| 25 | -| |2 |relevance in BL not firmly established| |
|
| 26 | 25 | | |1 |high-confidence DLBCL gene [@lohrDiscoveryPrioritizationSomatic2012a]| |
| 27 | 26 | |
| 28 | 27 | ## Mutation incidence in large patient cohorts (GAMBL reanalysis) |
HLA-B.md
| ... | ... | @@ -22,7 +22,6 @@ timeline |
| 22 | 22 | |Entity|Tier|Description | |
| 23 | 23 | |:------:|:----:|--------------------------------------| |
| 24 | 24 | ||1|high-confidence PMBL/cHL/GZL gene[@wienandGenomicAnalysesFlowsorted2019b]| |
| 25 | -| |2 |relevance in BL not firmly established| |
|
| 26 | 25 | | |1 |high-confidence DLBCL gene [@lohrDiscoveryPrioritizationSomatic2012a]| |
| 27 | 26 | | |2 |relevance in FL not firmly established| |
| 28 | 27 |
HLA-DMB.md
| ... | ... | @@ -12,7 +12,6 @@ HLA-DMB, along with HLA-DMA, plays a critical role in the proper functioning of |
| 12 | 12 | |
| 13 | 13 | |Entity|Tier|Description | |
| 14 | 14 | |:------:|:----:|--------------------------------------| |
| 15 | -| |2 |relevance in BL not firmly established| |
|
| 16 | 15 | | |1 |high-confidence DLBCL gene | |
| 17 | 16 | |
| 18 | 17 | ## Mutation incidence in large patient cohorts (GAMBL reanalysis) |
KLHL6.md
| ... | ... | @@ -26,7 +26,6 @@ timeline |
| 26 | 26 | | |1-a | aSHM target and high-confidence DLBCL gene [@morinFrequentMutationHistonemodifying2011]| |
| 27 | 27 | | |1-a | aSHM target and high-confidence FL gene [@morinFrequentMutationHistonemodifying2011]| |
| 28 | 28 | |
| 29 | -||2|relevance in BL not firmly established| |
|
| 30 | 29 | ## Mutation incidence in large patient cohorts (GAMBL reanalysis) |
| 31 | 30 | |
| 32 | 31 | |Entity|source |frequency (%)| |
LCOR.md
| ... | ... | @@ -21,8 +21,6 @@ timeline |
| 21 | 21 | |Entity|Tier|Description | |
| 22 | 22 | |:------:|:----:|--------------------------------------| |
| 23 | 23 | | |1 |high-confidence DLBCL gene [@arthurGenomewideDiscoverySomatic2018]| |
| 24 | -| |2 |relevance in BL not firmly established| |
|
| 25 | - |
|
| 26 | 24 | |
| 27 | 25 | ## Mutation incidence in large patient cohorts (GAMBL reanalysis) |
| 28 | 26 |