931fcf2a65e1212abeb7bd7fed1ba3caf1c6bcd3
DLBCL_genes.md
| ... | ... | @@ -93,7 +93,7 @@ link-citations: true |
| 93 | 93 | |[MPEG1](MPEG1)|Tier 1 GE[@morinMutationalStructuralAnalysis2013]|[Morin et al](papers/morinMutationalStructuralAnalysis2013)||| |
| 94 | 94 | |[MS4A1](MS4A1)|Tier 1 GE[@rushtonGeneticEvolutionaryPatterns2020]|[Rushton et al](papers/rushtonGeneticEvolutionaryPatterns2020)|[@mottokIntegrativeGenomicAnalysis2019b]|| |
| 95 | 95 | |[MTOR](MTOR)|Tier 1 GE[@zhangGeneticHeterogeneityDiffuse2013]|[Zhang et al](papers/zhangGeneticHeterogeneityDiffuse2013)|[@paneaWholeGenomeLandscape2019]|| |
| 96 | -|[MYC](MYC)|Tier 1 GE[@pasqualucciHypermutationMultipleProtooncogenes2001a]|[Pasqualucci et al](papers/pasqualucciHypermutationMultipleProtooncogenes2001a)|[@dunsCharacterizationDLBCLPMBL2021b; @jalladesExomeSequencingIdentifies2017; @johnstonCmycHypermutationBurkitt1992]|| |
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| 96 | +|[MYC](MYC)|Tier 1 GE[@pasqualucciHypermutationMultipleProtooncogenes2001a], FE[@giallongoIdentificationCmycOncogene1983], CE[@christieCMYCTranslocation142008]|[Pasqualucci et al](papers/pasqualucciHypermutationMultipleProtooncogenes2001a)|[@dunsCharacterizationDLBCLPMBL2021b; @jalladesExomeSequencingIdentifies2017; @johnstonCmycHypermutationBurkitt1992]|| |
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| 97 | 97 | |[MYD88](MYD88)|Tier 1 GE[@ngoOncogenicallyActiveMYD882011a]|[Ngo et al](papers/ngoOncogenicallyActiveMYD882011a)|[@yanBCRTLRSignaling2012a]|| |
| 98 | 98 | |[NFKBIA](NFKBIA)|Tier 1 GE[@lakeMutationsNFKBIAEncoding2009]|[Lake et al](papers/lakeMutationsNFKBIAEncoding2009)|[@russler-germainMutationsAssociatedProgression2023b; @wienandGenomicAnalysesFlowsorted2019b]|| |
| 99 | 99 | |[NFKBIE](NFKBIE)|Tier 1 GE[@morinGeneticLandscapesRelapsed2016]|[Morin et al](papers/morinGeneticLandscapesRelapsed2016)|[@mansouriFrequentNFKBIEDeletions2016; @pararajalingamCodingNoncodingDrivers2020]|| |
morinlab.bib
| ... | ... | @@ -1,3 +1,40 @@ |
| 1 | +@article{christieCMYCTranslocation142008, |
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| 2 | + title = {C-{{MYC}} Translocation in t(14;18) Positive Follicular Lymphoma at Presentation: {{An}} Adverse Prognostic Indicator?}, |
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| 3 | + shorttitle = {C-{{MYC}} Translocation in t(14;18) Positive Follicular Lymphoma at Presentation}, |
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| 4 | + author = {Christie, Lesley and Kernohan, Neil and Levison, David and Sales, Mark and Cunningham, Joan and Gillespie, Karen and Batstone, Paul and Meiklejohn, David and Goodlad, John}, |
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| 5 | + date = {2008-03}, |
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| 6 | + journaltitle = {Leukemia \& Lymphoma}, |
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| 7 | + shortjournal = {Leuk Lymphoma}, |
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| 8 | + volume = {49}, |
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| 9 | + number = {3}, |
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| 10 | + eprint = {18297523}, |
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| 11 | + eprinttype = {pmid}, |
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| 12 | + pages = {470--476}, |
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| 13 | + issn = {1029-2403}, |
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| 14 | + doi = {10.1080/10428190701836845}, |
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| 15 | + abstract = {Follicular lymphoma (FL) is a common subtype of low grade B-cell non-Hodgkin lymphoma (NHL). Although this form of lymphoma often pursues an indolent course, in some cases it may behave in a more aggressive manner. Clinical and histological parameters have been shown to correlate with an adverse prognosis but a number of cytogenetic abnormalities may also be associated with aggressive disease. Although, the t(14;18) in itself does not affect outcome in cases of FL, secondary abnormalities that occur in a complex polyploid karyotype may identify cases with a poor prognosis. It is unusual to find both t(14;18) and C-MYC translocation in the same tumour; those cases in which it has been described include examples of high-grade B-cell NHL (either de novo or transformed FL) or B-cell acute lymphoblastic lymphoma. In this report, three cases of FL are described in which both t(14;18) and a C-MYC translocation were identified at presentation. We also summarize four further cases from the literature. This is a small series but one which raises the possibility that the presence of a C-MYC translocations at presentation may identify a particularly aggressive subtype of FL. Further studies are required to investigate the true incidence of this aberration, the impact on C-MYC regulation, clinical course and response to treatment.}, |
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| 16 | + langid = {english}, |
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| 17 | + keywords = {Aged,Chromosomes Human Pair 14,Chromosomes Human Pair 18,Chromosomes Human Pair 8,Cytogenetic Analysis,Female,Humans,Lymphoma Follicular,Male,Prognosis,Proto-Oncogene Proteins c-myc,Translocation Genetic,Treatment Outcome} |
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| 18 | +} |
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| 19 | + |
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| 20 | +@article{giallongoIdentificationCmycOncogene1983, |
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| 21 | + title = {Identification of the C-Myc Oncogene Product in Normal and Malignant {{B}} Cells}, |
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| 22 | + author = {Giallongo, A. and Appella, E. and Ricciardi, R. and Rovera, G. and Croce, C. M.}, |
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| 23 | + date = {1983-10-28}, |
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| 24 | + journaltitle = {Science (New York, N.Y.)}, |
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| 25 | + shortjournal = {Science}, |
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| 26 | + volume = {222}, |
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| 27 | + number = {4622}, |
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| 28 | + eprint = {6604943}, |
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| 29 | + eprinttype = {pmid}, |
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| 30 | + pages = {430--432}, |
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| 31 | + issn = {0036-8075}, |
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| 32 | + doi = {10.1126/science.6604943}, |
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| 33 | + abstract = {Antiserum to a synthetic peptide corresponding to the carboxyl-terminus of the human c-myc protein immunoprecipitated a 48,000-dalton protein from a number of normal and malignant human and mouse cells. The size of the protein is consistent with the potential coding region predicted from the c-myc nucleotide sequence, and is the same for malignant cells carrying either a rearranged or an unrearranged c-myc oncogene. Because c-myc transcripts are expressed at higher levels in malignant than in normal B cells, it appears that an increased level of the c-myc protein rather than a change in the gene product is the relevant factor in determining transformation.}, |
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| 34 | + langid = {english}, |
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| 35 | + keywords = {B-Lymphocytes,Burkitt Lymphoma,Gene Expression Regulation,Humans,Oncogenes,Peptide Fragments,Proteins,Transformation Genetic} |
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| 36 | +} |
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| 37 | + |
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| 1 | 38 | @article{liLossCREBBPKMT2D2024, |
| 2 | 39 | title = {Loss of {{CREBBP}} and {{KMT2D}} Cooperate to Accelerate Lymphomagenesis and Shape the Lymphoma Immune Microenvironment}, |
| 3 | 40 | author = {Li, Jie and Chin, Christopher R. and Ying, Hsia-Yuan and Meydan, Cem and Teater, Matthew R. and Xia, Min and Farinha, Pedro and Takata, Katsuyoshi and Chu, Chi-Shuen and Jiang, Yiyue and Eagles, Jenna and Passerini, Verena and Tang, Zhanyun and Rivas, Martin A. and Weigert, Oliver and Pugh, Trevor J. and Chadburn, Amy and Steidl, Christian and Scott, David W. and Roeder, Robert G. and Mason, Christopher E. and Zappasodi, Roberta and Béguelin, Wendy and Melnick, Ari M.}, |