papers/abateDistinctViralMutational2015.md
... ...
@@ -0,0 +1,40 @@
1
+---
2
+title: ''
3
+bibliography: 'morinlab.bib'
4
+---
5
+
6
+# @abateDistinctViralMutational2015a
7
+## Summary of novel genes
8
+
9
+|Entity| Tier 1 genes| Tier 2 genes|
10
+|:-:|:-:|:-:|
11
+|BL|0|1|
12
+```mermaid
13
+---
14
+config:
15
+ sankey:
16
+ showValues: true
17
+ linkColor: target
18
+ width: 600
19
+ height: 300
20
+ nodeAlignment: right
21
+ prefix: '('
22
+ suffix: ' genes)'
23
+---
24
+sankey-beta
25
+This study, New Tier 1, 0
26
+New Tier 1, BL Tier 1, 0
27
+This study, New Tier 2, 1
28
+New Tier 2, BL Tier 2, 1
29
+All other BL studies, BL Tier 1, 29
30
+All other BL studies, BL Tier 2, 156
31
+```
32
+
33
+### Tier 2
34
+|New gene|BL tier|
35
+|:-|:-:|
36
+|[CCNF](../CCNF)|2 |
37
+
38
+
39
+# Details
40
+
papers/abateDistinctViralMutational2015a.md
... ...
@@ -1,40 +0,0 @@
1
----
2
-title: ''
3
-bibliography: 'morinlab.bib'
4
----
5
-
6
-# @abateDistinctViralMutational2015a
7
-## Summary of novel genes
8
-
9
-|Entity| Tier 1 genes| Tier 2 genes|
10
-|:-:|:-:|:-:|
11
-|BL|0|1|
12
-```mermaid
13
----
14
-config:
15
- sankey:
16
- showValues: true
17
- linkColor: target
18
- width: 600
19
- height: 300
20
- nodeAlignment: right
21
- prefix: '('
22
- suffix: ' genes)'
23
----
24
-sankey-beta
25
-This study, New Tier 1, 0
26
-New Tier 1, BL Tier 1, 0
27
-This study, New Tier 2, 1
28
-New Tier 2, BL Tier 2, 1
29
-All other BL studies, BL Tier 1, 29
30
-All other BL studies, BL Tier 2, 156
31
-```
32
-
33
-### Tier 2
34
-|New gene|BL tier|
35
-|:-|:-:|
36
-|[CCNF](../CCNF)|2 |
37
-
38
-
39
-# Details
40
-
papers/cheungAcquiredTNFRSF14Mutations2010.md
... ...
@@ -0,0 +1,43 @@
1
+---
2
+title: ''
3
+bibliography: 'morinlab.bib'
4
+---
5
+
6
+# @cheungAcquiredTNFRSF14Mutations2010a
7
+## Summary of novel genes
8
+
9
+|Entity| Tier 1 genes| Tier 2 genes|
10
+|:-:|:-:|:-:|
11
+|FL|1|0|
12
+|DLBCL|1|0|
13
+```mermaid
14
+---
15
+config:
16
+ sankey:
17
+ showValues: true
18
+ linkColor: target
19
+ width: 600
20
+ height: 300
21
+ nodeAlignment: right
22
+ prefix: '('
23
+ suffix: ' genes)'
24
+---
25
+sankey-beta
26
+This study, New Tier 1, 1
27
+New Tier 1, DLBCL Tier 1, 1
28
+This study, New Tier 2, 0
29
+New Tier 2, DLBCL Tier 2, 0
30
+All other DLBCL studies, DLBCL Tier 1, 127
31
+All other DLBCL studies, DLBCL Tier 2, 198
32
+```
33
+
34
+## Novel genes reported in this study
35
+
36
+### Tier 1
37
+|New gene|FL tier|DLBCL tier|
38
+|:-|:-:|:-:|
39
+|[TNFRSF14](../TNFRSF14)|1 |1 |
40
+
41
+
42
+# Details
43
+
papers/cheungAcquiredTNFRSF14Mutations2010a.md
... ...
@@ -1,43 +0,0 @@
1
----
2
-title: ''
3
-bibliography: 'morinlab.bib'
4
----
5
-
6
-# @cheungAcquiredTNFRSF14Mutations2010a
7
-## Summary of novel genes
8
-
9
-|Entity| Tier 1 genes| Tier 2 genes|
10
-|:-:|:-:|:-:|
11
-|FL|1|0|
12
-|DLBCL|1|0|
13
-```mermaid
14
----
15
-config:
16
- sankey:
17
- showValues: true
18
- linkColor: target
19
- width: 600
20
- height: 300
21
- nodeAlignment: right
22
- prefix: '('
23
- suffix: ' genes)'
24
----
25
-sankey-beta
26
-This study, New Tier 1, 1
27
-New Tier 1, DLBCL Tier 1, 1
28
-This study, New Tier 2, 0
29
-New Tier 2, DLBCL Tier 2, 0
30
-All other DLBCL studies, DLBCL Tier 1, 127
31
-All other DLBCL studies, DLBCL Tier 2, 198
32
-```
33
-
34
-## Novel genes reported in this study
35
-
36
-### Tier 1
37
-|New gene|FL tier|DLBCL tier|
38
-|:-|:-:|:-:|
39
-|[TNFRSF14](../TNFRSF14)|1 |1 |
40
-
41
-
42
-# Details
43
-
papers/compagnoMutationsMultipleGenes2009.md
... ...
@@ -0,0 +1,42 @@
1
+---
2
+title: ''
3
+bibliography: 'morinlab.bib'
4
+---
5
+
6
+# @compagnoMutationsMultipleGenes2009a
7
+## Summary of novel genes
8
+
9
+|Entity| Tier 1 genes| Tier 2 genes|
10
+|:-:|:-:|:-:|
11
+|DLBCL|1|0|
12
+```mermaid
13
+---
14
+config:
15
+ sankey:
16
+ showValues: true
17
+ linkColor: target
18
+ width: 600
19
+ height: 300
20
+ nodeAlignment: right
21
+ prefix: '('
22
+ suffix: ' genes)'
23
+---
24
+sankey-beta
25
+This study, New Tier 1, 1
26
+New Tier 1, DLBCL Tier 1, 1
27
+This study, New Tier 2, 0
28
+New Tier 2, DLBCL Tier 2, 0
29
+All other DLBCL studies, DLBCL Tier 1, 127
30
+All other DLBCL studies, DLBCL Tier 2, 198
31
+```
32
+
33
+## Novel genes reported in this study
34
+
35
+### Tier 1
36
+|New gene|DLBCL tier|
37
+|:-|:-:|
38
+|[TNFAIP3](../TNFAIP3)|1 |
39
+
40
+
41
+# Details
42
+
papers/compagnoMutationsMultipleGenes2009a.md
... ...
@@ -1,42 +0,0 @@
1
----
2
-title: ''
3
-bibliography: 'morinlab.bib'
4
----
5
-
6
-# @compagnoMutationsMultipleGenes2009a
7
-## Summary of novel genes
8
-
9
-|Entity| Tier 1 genes| Tier 2 genes|
10
-|:-:|:-:|:-:|
11
-|DLBCL|1|0|
12
-```mermaid
13
----
14
-config:
15
- sankey:
16
- showValues: true
17
- linkColor: target
18
- width: 600
19
- height: 300
20
- nodeAlignment: right
21
- prefix: '('
22
- suffix: ' genes)'
23
----
24
-sankey-beta
25
-This study, New Tier 1, 1
26
-New Tier 1, DLBCL Tier 1, 1
27
-This study, New Tier 2, 0
28
-New Tier 2, DLBCL Tier 2, 0
29
-All other DLBCL studies, DLBCL Tier 1, 127
30
-All other DLBCL studies, DLBCL Tier 2, 198
31
-```
32
-
33
-## Novel genes reported in this study
34
-
35
-### Tier 1
36
-|New gene|DLBCL tier|
37
-|:-|:-:|
38
-|[TNFAIP3](../TNFAIP3)|1 |
39
-
40
-
41
-# Details
42
-
papers/hubschmannMutationalMechanismsShaping2021.md
... ...
@@ -0,0 +1,82 @@
1
+---
2
+title: ''
3
+bibliography: 'morinlab.bib'
4
+---
5
+
6
+# @hubschmannMutationalMechanismsShaping2021b
7
+## Summary of novel genes
8
+
9
+|Entity| Total| Tier 1| Tier 2| Tier 2 Pass| Tier 2 Fail| Fail rate |
10
+|:-:|:-:|:-:|:-:|:-:|:-:|:-:|
11
+|DLBCL or FL|38|4|34|31|3| 9% |
12
+
13
+
14
+```mermaid
15
+---
16
+config:
17
+ sankey:
18
+ showValues: true
19
+ linkColor: target
20
+ width: 600
21
+ height: 300
22
+ nodeAlignment: right
23
+ prefix: '('
24
+ suffix: ' genes)'
25
+---
26
+sankey-beta
27
+New to this study, FL or DLBCL Tier 1, 4
28
+New to this study, FL or DLBCL Tier 2, 34
29
+FL or DLBCL Tier 2, Pass QC, 31
30
+FL or DLBCL Tier 2, Fail QC, 3
31
+```
32
+
33
+## Novel genes reported in this study
34
+
35
+### Tier 1
36
+|New gene|FL tier|DLBCL tier|
37
+|:-|:-:|:-:|
38
+|[ACTG1](../ACTG1)|2 |1 |
39
+|[EEF1A1](../EEF1A1)|1 |1 |
40
+|[FBXO11](../FBXO11)| |1 |
41
+|[VMA21](../VMA21)|1 | |
42
+
43
+### Tier 2
44
+|New gene|FL tier|DLBCL tier|Average variant quality|QC outcome|
45
+|:-|:-:|:-:|:-:|:-:|
46
+|[ADAMTS1](../ADAMTS1)| |2 |★ ★ ★ ☆ ☆ | **Pass** |
47
+|[ANKRD12](../ANKRD12)| |2 |★ ★ ★ ☆ ☆ | **Pass** |
48
+|[ATP6V1A](../ATP6V1A)|2 | |★ ★ ★ ★ ☆ | **Pass** |
49
+|[CADPS2](../CADPS2)| |2 |★ ★ ★ ★ ☆ | **Pass** |
50
+|[CDC42BPB](../CDC42BPB)|2 | |★ ★ ★ ☆ ☆|**Pass**|
51
+|[CNOT2](../CNOT2)| |2 |★ ★ ★ ★ ☆|**Pass**|
52
+|[CPNE8](../CPNE8)|2 | |★ ★ ★ ★ ☆|**Pass**|
53
+|[DHX15](../DHX15)|2 | |★ ★ ★ ★ ☆|**Pass**|
54
+|[DHX16](../DHX16)| |2 |★ ★ ★ ★ ☆|**Pass**|
55
+|[DNM2](../DNM2)| |2 |★ ★ ★ ☆ ☆|**Pass**|
56
+|[FZR1](../FZR1)|2 | |★ ★ ★ ☆ ☆|**Pass**|
57
+|[IKBKE](../IKBKE)| |2 |★ ★ ★ ★ ☆|**Pass**|
58
+|[IRF1](../IRF1)| |2 |★ ★ ★ ☆ ☆|**Pass**|
59
+|[JUP](../JUP)|2 | |★ ★ ★ ★ ☆|**Pass**|
60
+|[LAPTM5](../LAPTM5)|2 |2 |★ ★ ★ ★ ☆|**Pass**|
61
+|[LRP12](../LRP12)| |2 |★ ★ ★ ☆ ☆|**Pass**|
62
+|[MGEA5](../MGEA5)|2 | |★ ★ ★ ☆ ☆|**Pass**|
63
+|[MYCBP2](../MYCBP2)|2 | |★ ★ ★ ★ ☆|**Pass**|
64
+|[PDS5B](../PDS5B)|2 |2 |★ ★ ★ ☆ ☆|**Pass**|
65
+|[PNPO](../PNPO)| |2 |★ ★ ★ ☆ ☆|**Pass**|
66
+|[PPP4C](../PPP4C)|2 | |★ ★ ★ ★ ☆|**Pass**|
67
+|[PRKDC](../PRKDC)|2 |2 |★ ★ ★ ☆ ☆|**Pass**|
68
+|[RAC2](../RAC2)| |2 |★ ★ ★ ☆ ☆|**Pass**|
69
+|[RBM6](../RBM6)|2 | |★ ★ ★ ☆ ☆|**Pass**|
70
+|[SIAH2](../SIAH2)| |2 |★ ★ ★ ☆ ☆|**Pass**|
71
+|[SLC34A2](../SLC34A2)| |2 |★ ★ ★ ☆ ☆|**Pass**|
72
+|[TPP1](../TPP1)|2 | |★ ★ ★ ☆ ☆|**Pass**|
73
+|[TRAF6](../TRAF6)| |2 |★ ★ ★ ☆ ☆|**Pass**|
74
+|[UNC5B](../UNC5B)| |2 |★ ★ ★ ☆ ☆|**Pass**|
75
+|[WNK1](../WNK1)| |2 |★ ★ ★ ☆ ☆|**Pass**|
76
+|[ZNF217](../ZNF217)| |2 |★ ★ ★ ☆ ☆|**Pass**|
77
+|[HLA-DQA1](../HLA-DQA1)| |2 |★ ★☆ ☆ ☆|**Fail**|
78
+|[GAK](../GAK)| |2 |★ ★ ☆ ☆ ☆|**Fail**|
79
+|[NR2F2](../NR2F2)| |2 |★ ★ ☆ ☆ ☆|**Fail**|
80
+
81
+# Details
82
+
papers/hubschmannMutationalMechanismsShaping2021b.md
... ...
@@ -1,82 +0,0 @@
1
----
2
-title: ''
3
-bibliography: 'morinlab.bib'
4
----
5
-
6
-# @hubschmannMutationalMechanismsShaping2021b
7
-## Summary of novel genes
8
-
9
-|Entity| Total| Tier 1| Tier 2| Tier 2 Pass| Tier 2 Fail| Fail rate |
10
-|:-:|:-:|:-:|:-:|:-:|:-:|:-:|
11
-|DLBCL or FL|38|4|34|31|3| 9% |
12
-
13
-
14
-```mermaid
15
----
16
-config:
17
- sankey:
18
- showValues: true
19
- linkColor: target
20
- width: 600
21
- height: 300
22
- nodeAlignment: right
23
- prefix: '('
24
- suffix: ' genes)'
25
----
26
-sankey-beta
27
-New to this study, FL or DLBCL Tier 1, 4
28
-New to this study, FL or DLBCL Tier 2, 34
29
-FL or DLBCL Tier 2, Pass QC, 31
30
-FL or DLBCL Tier 2, Fail QC, 3
31
-```
32
-
33
-## Novel genes reported in this study
34
-
35
-### Tier 1
36
-|New gene|FL tier|DLBCL tier|
37
-|:-|:-:|:-:|
38
-|[ACTG1](../ACTG1)|2 |1 |
39
-|[EEF1A1](../EEF1A1)|1 |1 |
40
-|[FBXO11](../FBXO11)| |1 |
41
-|[VMA21](../VMA21)|1 | |
42
-
43
-### Tier 2
44
-|New gene|FL tier|DLBCL tier|Average variant quality|QC outcome|
45
-|:-|:-:|:-:|:-:|:-:|
46
-|[ADAMTS1](../ADAMTS1)| |2 |★ ★ ★ ☆ ☆ | **Pass** |
47
-|[ANKRD12](../ANKRD12)| |2 |★ ★ ★ ☆ ☆ | **Pass** |
48
-|[ATP6V1A](../ATP6V1A)|2 | |★ ★ ★ ★ ☆ | **Pass** |
49
-|[CADPS2](../CADPS2)| |2 |★ ★ ★ ★ ☆ | **Pass** |
50
-|[CDC42BPB](../CDC42BPB)|2 | |★ ★ ★ ☆ ☆|**Pass**|
51
-|[CNOT2](../CNOT2)| |2 |★ ★ ★ ★ ☆|**Pass**|
52
-|[CPNE8](../CPNE8)|2 | |★ ★ ★ ★ ☆|**Pass**|
53
-|[DHX15](../DHX15)|2 | |★ ★ ★ ★ ☆|**Pass**|
54
-|[DHX16](../DHX16)| |2 |★ ★ ★ ★ ☆|**Pass**|
55
-|[DNM2](../DNM2)| |2 |★ ★ ★ ☆ ☆|**Pass**|
56
-|[FZR1](../FZR1)|2 | |★ ★ ★ ☆ ☆|**Pass**|
57
-|[IKBKE](../IKBKE)| |2 |★ ★ ★ ★ ☆|**Pass**|
58
-|[IRF1](../IRF1)| |2 |★ ★ ★ ☆ ☆|**Pass**|
59
-|[JUP](../JUP)|2 | |★ ★ ★ ★ ☆|**Pass**|
60
-|[LAPTM5](../LAPTM5)|2 |2 |★ ★ ★ ★ ☆|**Pass**|
61
-|[LRP12](../LRP12)| |2 |★ ★ ★ ☆ ☆|**Pass**|
62
-|[MGEA5](../MGEA5)|2 | |★ ★ ★ ☆ ☆|**Pass**|
63
-|[MYCBP2](../MYCBP2)|2 | |★ ★ ★ ★ ☆|**Pass**|
64
-|[PDS5B](../PDS5B)|2 |2 |★ ★ ★ ☆ ☆|**Pass**|
65
-|[PNPO](../PNPO)| |2 |★ ★ ★ ☆ ☆|**Pass**|
66
-|[PPP4C](../PPP4C)|2 | |★ ★ ★ ★ ☆|**Pass**|
67
-|[PRKDC](../PRKDC)|2 |2 |★ ★ ★ ☆ ☆|**Pass**|
68
-|[RAC2](../RAC2)| |2 |★ ★ ★ ☆ ☆|**Pass**|
69
-|[RBM6](../RBM6)|2 | |★ ★ ★ ☆ ☆|**Pass**|
70
-|[SIAH2](../SIAH2)| |2 |★ ★ ★ ☆ ☆|**Pass**|
71
-|[SLC34A2](../SLC34A2)| |2 |★ ★ ★ ☆ ☆|**Pass**|
72
-|[TPP1](../TPP1)|2 | |★ ★ ★ ☆ ☆|**Pass**|
73
-|[TRAF6](../TRAF6)| |2 |★ ★ ★ ☆ ☆|**Pass**|
74
-|[UNC5B](../UNC5B)| |2 |★ ★ ★ ☆ ☆|**Pass**|
75
-|[WNK1](../WNK1)| |2 |★ ★ ★ ☆ ☆|**Pass**|
76
-|[ZNF217](../ZNF217)| |2 |★ ★ ★ ☆ ☆|**Pass**|
77
-|[HLA-DQA1](../HLA-DQA1)| |2 |★ ★☆ ☆ ☆|**Fail**|
78
-|[GAK](../GAK)| |2 |★ ★ ☆ ☆ ☆|**Fail**|
79
-|[NR2F2](../NR2F2)| |2 |★ ★ ☆ ☆ ☆|**Fail**|
80
-
81
-# Details
82
-
papers/lohrDiscoveryPrioritizationSomatic2012.md
... ...
@@ -0,0 +1,49 @@
1
+---
2
+title: ''
3
+bibliography: 'morinlab.bib'
4
+---
5
+
6
+# @lohrDiscoveryPrioritizationSomatic2012a
7
+## Summary of novel genes
8
+
9
+|Entity| Tier 1 genes| Tier 2 genes|
10
+|:-:|:-:|:-:|
11
+|DLBCL|3|1|
12
+```mermaid
13
+---
14
+config:
15
+ sankey:
16
+ showValues: true
17
+ linkColor: target
18
+ width: 600
19
+ height: 300
20
+ nodeAlignment: right
21
+ prefix: '('
22
+ suffix: ' genes)'
23
+---
24
+sankey-beta
25
+This study, New Tier 1, 3
26
+New Tier 1, DLBCL Tier 1, 3
27
+This study, New Tier 2, 1
28
+New Tier 2, DLBCL Tier 2, 1
29
+All other DLBCL studies, DLBCL Tier 1, 125
30
+All other DLBCL studies, DLBCL Tier 2, 197
31
+```
32
+
33
+## Novel genes reported in this study
34
+
35
+### Tier 1
36
+|New gene|DLBCL tier|
37
+|:-|:-:|
38
+|[ACTB](../ACTB)|1 |
39
+|[KRAS](../KRAS)|1 |
40
+|[P2RY8](../P2RY8)|1 |
41
+
42
+### Tier 2
43
+|New gene|DLBCL tier|
44
+|:-|:-:|
45
+|[PCLO](../PCLO)|2 |
46
+
47
+
48
+# Details
49
+
papers/lohrDiscoveryPrioritizationSomatic2012a.md
... ...
@@ -1,49 +0,0 @@
1
----
2
-title: ''
3
-bibliography: 'morinlab.bib'
4
----
5
-
6
-# @lohrDiscoveryPrioritizationSomatic2012a
7
-## Summary of novel genes
8
-
9
-|Entity| Tier 1 genes| Tier 2 genes|
10
-|:-:|:-:|:-:|
11
-|DLBCL|3|1|
12
-```mermaid
13
----
14
-config:
15
- sankey:
16
- showValues: true
17
- linkColor: target
18
- width: 600
19
- height: 300
20
- nodeAlignment: right
21
- prefix: '('
22
- suffix: ' genes)'
23
----
24
-sankey-beta
25
-This study, New Tier 1, 3
26
-New Tier 1, DLBCL Tier 1, 3
27
-This study, New Tier 2, 1
28
-New Tier 2, DLBCL Tier 2, 1
29
-All other DLBCL studies, DLBCL Tier 1, 125
30
-All other DLBCL studies, DLBCL Tier 2, 197
31
-```
32
-
33
-## Novel genes reported in this study
34
-
35
-### Tier 1
36
-|New gene|DLBCL tier|
37
-|:-|:-:|
38
-|[ACTB](../ACTB)|1 |
39
-|[KRAS](../KRAS)|1 |
40
-|[P2RY8](../P2RY8)|1 |
41
-
42
-### Tier 2
43
-|New gene|DLBCL tier|
44
-|:-|:-:|
45
-|[PCLO](../PCLO)|2 |
46
-
47
-
48
-# Details
49
-
papers/louissaintPediatrictypeNodalFollicular2016.md
... ...
@@ -0,0 +1,42 @@
1
+---
2
+title: ''
3
+bibliography: 'morinlab.bib'
4
+---
5
+
6
+# @louissaintPediatrictypeNodalFollicular2016a
7
+## Summary of novel genes
8
+
9
+|Entity| Tier 1 genes| Tier 2 genes|
10
+|:-:|:-:|:-:|
11
+|FL|1|0|
12
+```mermaid
13
+---
14
+config:
15
+ sankey:
16
+ showValues: true
17
+ linkColor: target
18
+ width: 600
19
+ height: 300
20
+ nodeAlignment: right
21
+ prefix: '('
22
+ suffix: ' genes)'
23
+---
24
+sankey-beta
25
+This study, New Tier 1, 1
26
+New Tier 1, FL Tier 1, 1
27
+This study, New Tier 2, 0
28
+New Tier 2, FL Tier 2, 0
29
+All other FL studies, FL Tier 1, 65
30
+All other FL studies, FL Tier 2, 50
31
+```
32
+
33
+## Novel genes reported in this study
34
+
35
+### Tier 1
36
+|New gene|FL tier|
37
+|:-|:-:|
38
+|[MAP2K1](../MAP2K1)|1 |
39
+
40
+
41
+# Details
42
+
papers/louissaintPediatrictypeNodalFollicular2016a.md
... ...
@@ -1,42 +0,0 @@
1
----
2
-title: ''
3
-bibliography: 'morinlab.bib'
4
----
5
-
6
-# @louissaintPediatrictypeNodalFollicular2016a
7
-## Summary of novel genes
8
-
9
-|Entity| Tier 1 genes| Tier 2 genes|
10
-|:-:|:-:|:-:|
11
-|FL|1|0|
12
-```mermaid
13
----
14
-config:
15
- sankey:
16
- showValues: true
17
- linkColor: target
18
- width: 600
19
- height: 300
20
- nodeAlignment: right
21
- prefix: '('
22
- suffix: ' genes)'
23
----
24
-sankey-beta
25
-This study, New Tier 1, 1
26
-New Tier 1, FL Tier 1, 1
27
-This study, New Tier 2, 0
28
-New Tier 2, FL Tier 2, 0
29
-All other FL studies, FL Tier 1, 65
30
-All other FL studies, FL Tier 2, 50
31
-```
32
-
33
-## Novel genes reported in this study
34
-
35
-### Tier 1
36
-|New gene|FL tier|
37
-|:-|:-:|
38
-|[MAP2K1](../MAP2K1)|1 |
39
-
40
-
41
-# Details
42
-
papers/morinSomaticMutationsAltering2010.md
... ...
@@ -0,0 +1,46 @@
1
+---
2
+title: ''
3
+bibliography: 'morinlab.bib'
4
+---
5
+
6
+# @morinSomaticMutationsAltering2010a
7
+## Summary of novel genes
8
+
9
+|Entity| Tier 1 genes| Tier 2 genes|Tier 3 genes|
10
+|:-:|:-:|:-:|:-:|
11
+|DLBCL|1|0|0|
12
+|FL|1|0|0|
13
+```mermaid
14
+---
15
+config:
16
+ sankey:
17
+ showValues: true
18
+ linkColor: target
19
+ width: 600
20
+ height: 300
21
+ nodeAlignment: right
22
+ prefix: '('
23
+ suffix: ' genes)'
24
+---
25
+sankey-beta
26
+This study, New Tier 1, 1
27
+New Tier 1, FL Tier 1, 1
28
+This study, New Tier 2, 0
29
+New Tier 2, FL Tier 2, 0
30
+This study, New Tier 3, 0
31
+New Tier 3, FL Tier 3, 0
32
+All other FL studies, FL Tier 1, 65
33
+All other FL studies, FL Tier 2, 49
34
+All other FL studies, FL Tier 3, 0
35
+```
36
+
37
+## Novel genes reported in this study
38
+
39
+### Tier 1
40
+|New gene|DLBCL tier|FL tier|
41
+|:-|:-:|:-:|
42
+|[EZH2](../EZH2)|1 |1 |
43
+
44
+
45
+# Details
46
+
papers/morinSomaticMutationsAltering2010a.md
... ...
@@ -1,46 +0,0 @@
1
----
2
-title: ''
3
-bibliography: 'morinlab.bib'
4
----
5
-
6
-# @morinSomaticMutationsAltering2010a
7
-## Summary of novel genes
8
-
9
-|Entity| Tier 1 genes| Tier 2 genes|Tier 3 genes|
10
-|:-:|:-:|:-:|:-:|
11
-|DLBCL|1|0|0|
12
-|FL|1|0|0|
13
-```mermaid
14
----
15
-config:
16
- sankey:
17
- showValues: true
18
- linkColor: target
19
- width: 600
20
- height: 300
21
- nodeAlignment: right
22
- prefix: '('
23
- suffix: ' genes)'
24
----
25
-sankey-beta
26
-This study, New Tier 1, 1
27
-New Tier 1, FL Tier 1, 1
28
-This study, New Tier 2, 0
29
-New Tier 2, FL Tier 2, 0
30
-This study, New Tier 3, 0
31
-New Tier 3, FL Tier 3, 0
32
-All other FL studies, FL Tier 1, 65
33
-All other FL studies, FL Tier 2, 49
34
-All other FL studies, FL Tier 3, 0
35
-```
36
-
37
-## Novel genes reported in this study
38
-
39
-### Tier 1
40
-|New gene|DLBCL tier|FL tier|
41
-|:-|:-:|:-:|
42
-|[EZH2](../EZH2)|1 |1 |
43
-
44
-
45
-# Details
46
-
papers/ngoOncogenicallyActiveMYD882011.md
... ...
@@ -0,0 +1,42 @@
1
+---
2
+title: ''
3
+bibliography: 'morinlab.bib'
4
+---
5
+
6
+# @ngoOncogenicallyActiveMYD882011a
7
+## Summary of novel genes
8
+
9
+|Entity| Tier 1 genes| Tier 2 genes|
10
+|:-:|:-:|:-:|
11
+|DLBCL|1|0|
12
+```mermaid
13
+---
14
+config:
15
+ sankey:
16
+ showValues: true
17
+ linkColor: target
18
+ width: 600
19
+ height: 300
20
+ nodeAlignment: right
21
+ prefix: '('
22
+ suffix: ' genes)'
23
+---
24
+sankey-beta
25
+This study, New Tier 1, 1
26
+New Tier 1, DLBCL Tier 1, 1
27
+This study, New Tier 2, 0
28
+New Tier 2, DLBCL Tier 2, 0
29
+All other DLBCL studies, DLBCL Tier 1, 127
30
+All other DLBCL studies, DLBCL Tier 2, 198
31
+```
32
+
33
+## Novel genes reported in this study
34
+
35
+### Tier 1
36
+|New gene|DLBCL tier|
37
+|:-|:-:|
38
+|[MYD88](../MYD88)|1 |
39
+
40
+
41
+# Details
42
+
papers/ngoOncogenicallyActiveMYD882011a.md
... ...
@@ -1,42 +0,0 @@
1
----
2
-title: ''
3
-bibliography: 'morinlab.bib'
4
----
5
-
6
-# @ngoOncogenicallyActiveMYD882011a
7
-## Summary of novel genes
8
-
9
-|Entity| Tier 1 genes| Tier 2 genes|
10
-|:-:|:-:|:-:|
11
-|DLBCL|1|0|
12
-```mermaid
13
----
14
-config:
15
- sankey:
16
- showValues: true
17
- linkColor: target
18
- width: 600
19
- height: 300
20
- nodeAlignment: right
21
- prefix: '('
22
- suffix: ' genes)'
23
----
24
-sankey-beta
25
-This study, New Tier 1, 1
26
-New Tier 1, DLBCL Tier 1, 1
27
-This study, New Tier 2, 0
28
-New Tier 2, DLBCL Tier 2, 0
29
-All other DLBCL studies, DLBCL Tier 1, 127
30
-All other DLBCL studies, DLBCL Tier 2, 198
31
-```
32
-
33
-## Novel genes reported in this study
34
-
35
-### Tier 1
36
-|New gene|DLBCL tier|
37
-|:-|:-:|
38
-|[MYD88](../MYD88)|1 |
39
-
40
-
41
-# Details
42
-
papers/okosunRecurrentMTORC1activatingRRAGC2016.md
... ...
@@ -0,0 +1,45 @@
1
+---
2
+title: ''
3
+bibliography: 'morinlab.bib'
4
+---
5
+
6
+# @okosunRecurrentMTORC1activatingRRAGC2016a
7
+## Summary of novel genes
8
+
9
+|Entity| Tier 1 genes| Tier 2 genes|
10
+|:-:|:-:|:-:|
11
+|DLBCL|1|0|
12
+|FL|3|0|
13
+```mermaid
14
+---
15
+config:
16
+ sankey:
17
+ showValues: true
18
+ linkColor: target
19
+ width: 600
20
+ height: 300
21
+ nodeAlignment: right
22
+ prefix: '('
23
+ suffix: ' genes)'
24
+---
25
+sankey-beta
26
+This study, New Tier 1, 3
27
+New Tier 1, FL Tier 1, 3
28
+This study, New Tier 2, 0
29
+New Tier 2, FL Tier 2, 0
30
+All other FL studies, FL Tier 1, 63
31
+All other FL studies, FL Tier 2, 50
32
+```
33
+
34
+## Novel genes reported in this study
35
+
36
+### Tier 1
37
+|New gene|DLBCL tier|FL tier|
38
+|:-|:-:|:-:|
39
+|[ATP6AP1](../ATP6AP1)| |1 |
40
+|[ATP6V1B2](../ATP6V1B2)| |1 |
41
+|[RRAGC](../RRAGC)|1 |1 |
42
+
43
+
44
+# Details
45
+
papers/okosunRecurrentMTORC1activatingRRAGC2016a.md
... ...
@@ -1,45 +0,0 @@
1
----
2
-title: ''
3
-bibliography: 'morinlab.bib'
4
----
5
-
6
-# @okosunRecurrentMTORC1activatingRRAGC2016a
7
-## Summary of novel genes
8
-
9
-|Entity| Tier 1 genes| Tier 2 genes|
10
-|:-:|:-:|:-:|
11
-|DLBCL|1|0|
12
-|FL|3|0|
13
-```mermaid
14
----
15
-config:
16
- sankey:
17
- showValues: true
18
- linkColor: target
19
- width: 600
20
- height: 300
21
- nodeAlignment: right
22
- prefix: '('
23
- suffix: ' genes)'
24
----
25
-sankey-beta
26
-This study, New Tier 1, 3
27
-New Tier 1, FL Tier 1, 3
28
-This study, New Tier 2, 0
29
-New Tier 2, FL Tier 2, 0
30
-All other FL studies, FL Tier 1, 63
31
-All other FL studies, FL Tier 2, 50
32
-```
33
-
34
-## Novel genes reported in this study
35
-
36
-### Tier 1
37
-|New gene|DLBCL tier|FL tier|
38
-|:-|:-:|:-:|
39
-|[ATP6AP1](../ATP6AP1)| |1 |
40
-|[ATP6V1B2](../ATP6V1B2)| |1 |
41
-|[RRAGC](../RRAGC)|1 |1 |
42
-
43
-
44
-# Details
45
-
papers/ottoGeneticLesionsTRAF32012.md
... ...
@@ -0,0 +1,43 @@
1
+---
2
+title: ''
3
+bibliography: 'morinlab.bib'
4
+---
5
+
6
+# @ottoGeneticLesionsTRAF32012a
7
+## Summary of novel genes
8
+
9
+|Entity| Tier 1 genes| Tier 2 genes|
10
+|:-:|:-:|:-:|
11
+|PMBL|2|0|
12
+```mermaid
13
+---
14
+config:
15
+ sankey:
16
+ showValues: true
17
+ linkColor: target
18
+ width: 600
19
+ height: 300
20
+ nodeAlignment: right
21
+ prefix: '('
22
+ suffix: ' genes)'
23
+---
24
+sankey-beta
25
+This study, New Tier 1, 2
26
+New Tier 1, PMBL Tier 1, 2
27
+This study, New Tier 2, 0
28
+New Tier 2, PMBL Tier 2, 0
29
+All other PMBL studies, PMBL Tier 1, 74
30
+All other PMBL studies, PMBL Tier 2, 82
31
+```
32
+
33
+## Novel genes reported in this study
34
+
35
+### Tier 1
36
+|New gene|PMBL tier|
37
+|:-|:-:|
38
+|[MAP3K14](../MAP3K14)|1 |
39
+|[TRAF3](../TRAF3)|1 |
40
+
41
+
42
+# Details
43
+
papers/ottoGeneticLesionsTRAF32012a.md
... ...
@@ -1,43 +0,0 @@
1
----
2
-title: ''
3
-bibliography: 'morinlab.bib'
4
----
5
-
6
-# @ottoGeneticLesionsTRAF32012a
7
-## Summary of novel genes
8
-
9
-|Entity| Tier 1 genes| Tier 2 genes|
10
-|:-:|:-:|:-:|
11
-|PMBL|2|0|
12
-```mermaid
13
----
14
-config:
15
- sankey:
16
- showValues: true
17
- linkColor: target
18
- width: 600
19
- height: 300
20
- nodeAlignment: right
21
- prefix: '('
22
- suffix: ' genes)'
23
----
24
-sankey-beta
25
-This study, New Tier 1, 2
26
-New Tier 1, PMBL Tier 1, 2
27
-This study, New Tier 2, 0
28
-New Tier 2, PMBL Tier 2, 0
29
-All other PMBL studies, PMBL Tier 1, 74
30
-All other PMBL studies, PMBL Tier 2, 82
31
-```
32
-
33
-## Novel genes reported in this study
34
-
35
-### Tier 1
36
-|New gene|PMBL tier|
37
-|:-|:-:|
38
-|[MAP3K14](../MAP3K14)|1 |
39
-|[TRAF3](../TRAF3)|1 |
40
-
41
-
42
-# Details
43
-
papers/pasqualucciHypermutationMultipleProtooncogenes2001.md
... ...
@@ -0,0 +1,49 @@
1
+---
2
+title: ''
3
+bibliography: 'morinlab.bib'
4
+---
5
+
6
+# @pasqualucciHypermutationMultipleProtooncogenes2001a
7
+## Summary of novel genes
8
+
9
+|Entity| Tier 1 genes| Tier 2 genes|
10
+|:-:|:-:|:-:|
11
+|DLBCL|2|2|
12
+```mermaid
13
+---
14
+config:
15
+ sankey:
16
+ showValues: true
17
+ linkColor: target
18
+ width: 600
19
+ height: 300
20
+ nodeAlignment: right
21
+ prefix: '('
22
+ suffix: ' genes)'
23
+---
24
+sankey-beta
25
+This study, New Tier 1, 2
26
+New Tier 1, DLBCL Tier 1, 2
27
+This study, New Tier 2, 2
28
+New Tier 2, DLBCL Tier 2, 2
29
+All other DLBCL studies, DLBCL Tier 1, 126
30
+All other DLBCL studies, DLBCL Tier 2, 196
31
+```
32
+
33
+## Novel genes reported in this study
34
+
35
+### Tier 1
36
+|New gene|DLBCL tier|
37
+|:-|:-:|
38
+|[MYC](../MYC)|1 |
39
+|[PIM1](../PIM1)|1 |
40
+
41
+### Tier 2
42
+|New gene|DLBCL tier|
43
+|:-|:-:|
44
+|[PAX5](../PAX5)|2 |
45
+|[RHOH](../RHOH)|2 |
46
+
47
+
48
+# Details
49
+
papers/pasqualucciHypermutationMultipleProtooncogenes2001a.md
... ...
@@ -1,49 +0,0 @@
1
----
2
-title: ''
3
-bibliography: 'morinlab.bib'
4
----
5
-
6
-# @pasqualucciHypermutationMultipleProtooncogenes2001a
7
-## Summary of novel genes
8
-
9
-|Entity| Tier 1 genes| Tier 2 genes|
10
-|:-:|:-:|:-:|
11
-|DLBCL|2|2|
12
-```mermaid
13
----
14
-config:
15
- sankey:
16
- showValues: true
17
- linkColor: target
18
- width: 600
19
- height: 300
20
- nodeAlignment: right
21
- prefix: '('
22
- suffix: ' genes)'
23
----
24
-sankey-beta
25
-This study, New Tier 1, 2
26
-New Tier 1, DLBCL Tier 1, 2
27
-This study, New Tier 2, 2
28
-New Tier 2, DLBCL Tier 2, 2
29
-All other DLBCL studies, DLBCL Tier 1, 126
30
-All other DLBCL studies, DLBCL Tier 2, 196
31
-```
32
-
33
-## Novel genes reported in this study
34
-
35
-### Tier 1
36
-|New gene|DLBCL tier|
37
-|:-|:-:|
38
-|[MYC](../MYC)|1 |
39
-|[PIM1](../PIM1)|1 |
40
-
41
-### Tier 2
42
-|New gene|DLBCL tier|
43
-|:-|:-:|
44
-|[PAX5](../PAX5)|2 |
45
-|[RHOH](../RHOH)|2 |
46
-
47
-
48
-# Details
49
-
papers/pasqualucciInactivatingMutationsAcetyltransferase2011.md
... ...
@@ -0,0 +1,44 @@
1
+---
2
+title: ''
3
+bibliography: 'morinlab.bib'
4
+---
5
+
6
+# @pasqualucciInactivatingMutationsAcetyltransferase2011a
7
+## Summary of novel genes
8
+
9
+|Entity| Tier 1 genes| Tier 2 genes|
10
+|:-:|:-:|:-:|
11
+|DLBCL|2|0|
12
+|FL|2|0|
13
+```mermaid
14
+---
15
+config:
16
+ sankey:
17
+ showValues: true
18
+ linkColor: target
19
+ width: 600
20
+ height: 300
21
+ nodeAlignment: right
22
+ prefix: '('
23
+ suffix: ' genes)'
24
+---
25
+sankey-beta
26
+This study, New Tier 1, 2
27
+New Tier 1, FL Tier 1, 2
28
+This study, New Tier 2, 0
29
+New Tier 2, FL Tier 2, 0
30
+All other FL studies, FL Tier 1, 64
31
+All other FL studies, FL Tier 2, 50
32
+```
33
+
34
+## Novel genes reported in this study
35
+
36
+### Tier 1
37
+|New gene|DLBCL tier|FL tier|
38
+|:-|:-:|:-:|
39
+|[CREBBP](../CREBBP)|1 |1 |
40
+|[EP300](../EP300)|1 |1 |
41
+
42
+
43
+# Details
44
+
papers/pasqualucciInactivatingMutationsAcetyltransferase2011a.md
... ...
@@ -1,44 +0,0 @@
1
----
2
-title: ''
3
-bibliography: 'morinlab.bib'
4
----
5
-
6
-# @pasqualucciInactivatingMutationsAcetyltransferase2011a
7
-## Summary of novel genes
8
-
9
-|Entity| Tier 1 genes| Tier 2 genes|
10
-|:-:|:-:|:-:|
11
-|DLBCL|2|0|
12
-|FL|2|0|
13
-```mermaid
14
----
15
-config:
16
- sankey:
17
- showValues: true
18
- linkColor: target
19
- width: 600
20
- height: 300
21
- nodeAlignment: right
22
- prefix: '('
23
- suffix: ' genes)'
24
----
25
-sankey-beta
26
-This study, New Tier 1, 2
27
-New Tier 1, FL Tier 1, 2
28
-This study, New Tier 2, 0
29
-New Tier 2, FL Tier 2, 0
30
-All other FL studies, FL Tier 1, 64
31
-All other FL studies, FL Tier 2, 50
32
-```
33
-
34
-## Novel genes reported in this study
35
-
36
-### Tier 1
37
-|New gene|DLBCL tier|FL tier|
38
-|:-|:-:|:-:|
39
-|[CREBBP](../CREBBP)|1 |1 |
40
-|[EP300](../EP300)|1 |1 |
41
-
42
-
43
-# Details
44
-
papers/pasqualucciInactivationPRDM1BLIMP12006.md
... ...
@@ -0,0 +1,42 @@
1
+---
2
+title: ''
3
+bibliography: 'morinlab.bib'
4
+---
5
+
6
+# @pasqualucciInactivationPRDM1BLIMP12006a
7
+## Summary of novel genes
8
+
9
+|Entity| Tier 1 genes| Tier 2 genes|
10
+|:-:|:-:|:-:|
11
+|DLBCL|1|0|
12
+```mermaid
13
+---
14
+config:
15
+ sankey:
16
+ showValues: true
17
+ linkColor: target
18
+ width: 600
19
+ height: 300
20
+ nodeAlignment: right
21
+ prefix: '('
22
+ suffix: ' genes)'
23
+---
24
+sankey-beta
25
+This study, New Tier 1, 1
26
+New Tier 1, DLBCL Tier 1, 1
27
+This study, New Tier 2, 0
28
+New Tier 2, DLBCL Tier 2, 0
29
+All other DLBCL studies, DLBCL Tier 1, 127
30
+All other DLBCL studies, DLBCL Tier 2, 198
31
+```
32
+
33
+## Novel genes reported in this study
34
+
35
+### Tier 1
36
+|New gene|DLBCL tier|
37
+|:-|:-:|
38
+|[PRDM1](../PRDM1)|1 |
39
+
40
+
41
+# Details
42
+
papers/pasqualucciInactivationPRDM1BLIMP12006a.md
... ...
@@ -1,42 +0,0 @@
1
----
2
-title: ''
3
-bibliography: 'morinlab.bib'
4
----
5
-
6
-# @pasqualucciInactivationPRDM1BLIMP12006a
7
-## Summary of novel genes
8
-
9
-|Entity| Tier 1 genes| Tier 2 genes|
10
-|:-:|:-:|:-:|
11
-|DLBCL|1|0|
12
-```mermaid
13
----
14
-config:
15
- sankey:
16
- showValues: true
17
- linkColor: target
18
- width: 600
19
- height: 300
20
- nodeAlignment: right
21
- prefix: '('
22
- suffix: ' genes)'
23
----
24
-sankey-beta
25
-This study, New Tier 1, 1
26
-New Tier 1, DLBCL Tier 1, 1
27
-This study, New Tier 2, 0
28
-New Tier 2, DLBCL Tier 2, 0
29
-All other DLBCL studies, DLBCL Tier 1, 127
30
-All other DLBCL studies, DLBCL Tier 2, 198
31
-```
32
-
33
-## Novel genes reported in this study
34
-
35
-### Tier 1
36
-|New gene|DLBCL tier|
37
-|:-|:-:|
38
-|[PRDM1](../PRDM1)|1 |
39
-
40
-
41
-# Details
42
-
papers/reichelFlowSortingExome2015.md
... ...
@@ -0,0 +1,74 @@
1
+---
2
+title: ''
3
+bibliography: 'morinlab.bib'
4
+---
5
+
6
+# @reichelFlowSortingExome2015a
7
+## Summary of novel genes
8
+
9
+|Entity| Tier 1 genes| Tier 2 genes|
10
+|:-:|:-:|:-:|
11
+|PMBL|11|18|
12
+```mermaid
13
+---
14
+config:
15
+ sankey:
16
+ showValues: true
17
+ linkColor: target
18
+ width: 600
19
+ height: 300
20
+ nodeAlignment: right
21
+ prefix: '('
22
+ suffix: ' genes)'
23
+---
24
+sankey-beta
25
+This study, New Tier 1, 11
26
+New Tier 1, PMBL Tier 1, 11
27
+This study, New Tier 2, 18
28
+New Tier 2, PMBL Tier 2, 18
29
+All other PMBL studies, PMBL Tier 1, 65
30
+All other PMBL studies, PMBL Tier 2, 64
31
+```
32
+
33
+## Novel genes reported in this study
34
+
35
+### Tier 1
36
+|New gene|PMBL tier|
37
+|:-|:-:|
38
+|[B2M](../B2M)|1 |
39
+|[CSF2RB](../CSF2RB)|1 |
40
+|[EBF1](../EBF1)|1 |
41
+|[EEF1A1](../EEF1A1)|1 |
42
+|[GNA13](../GNA13)|1 |
43
+|[HIST1H1E](../HIST1H1E)|1 |
44
+|[ITPKB](../ITPKB)|1 |
45
+|[PIM2](../PIM2)|1 |
46
+|[UBE2A](../UBE2A)|1 |
47
+|[WEE1](../WEE1)|1 |
48
+|[ZFP36L1](../ZFP36L1)|1 |
49
+
50
+### Tier 2
51
+|New gene|PMBL tier|
52
+|:-|:-:|
53
+|[ARIH2](../ARIH2)|2 |
54
+|[BCL7A](../BCL7A)|2 |
55
+|[DMD](../DMD)|2 |
56
+|[EGR1](../EGR1)|2 |
57
+|[HECW2](../HECW2)|2 |
58
+|[HELLS](../HELLS)|2 |
59
+|[HIST1H3B](../HIST1H3B)|2 |
60
+|[HIST1H4C](../HIST1H4C)|2 |
61
+|[MPDZ](../MPDZ)|2 |
62
+|[NEK1](../NEK1)|2 |
63
+|[RANBP2](../RANBP2)|2 |
64
+|[SENP7](../SENP7)|2 |
65
+|[SETDB1](../SETDB1)|2 |
66
+|[SIAH2](../SIAH2)|2 |
67
+|[TBC1D15](../TBC1D15)|2 |
68
+|[TICRR](../TICRR)|2 |
69
+|[TRIP11](../TRIP11)|2 |
70
+|[ZNF217](../ZNF217)|2 |
71
+
72
+
73
+# Details
74
+
papers/reichelFlowSortingExome2015a.md
... ...
@@ -1,74 +0,0 @@
1
----
2
-title: ''
3
-bibliography: 'morinlab.bib'
4
----
5
-
6
-# @reichelFlowSortingExome2015a
7
-## Summary of novel genes
8
-
9
-|Entity| Tier 1 genes| Tier 2 genes|
10
-|:-:|:-:|:-:|
11
-|PMBL|11|18|
12
-```mermaid
13
----
14
-config:
15
- sankey:
16
- showValues: true
17
- linkColor: target
18
- width: 600
19
- height: 300
20
- nodeAlignment: right
21
- prefix: '('
22
- suffix: ' genes)'
23
----
24
-sankey-beta
25
-This study, New Tier 1, 11
26
-New Tier 1, PMBL Tier 1, 11
27
-This study, New Tier 2, 18
28
-New Tier 2, PMBL Tier 2, 18
29
-All other PMBL studies, PMBL Tier 1, 65
30
-All other PMBL studies, PMBL Tier 2, 64
31
-```
32
-
33
-## Novel genes reported in this study
34
-
35
-### Tier 1
36
-|New gene|PMBL tier|
37
-|:-|:-:|
38
-|[B2M](../B2M)|1 |
39
-|[CSF2RB](../CSF2RB)|1 |
40
-|[EBF1](../EBF1)|1 |
41
-|[EEF1A1](../EEF1A1)|1 |
42
-|[GNA13](../GNA13)|1 |
43
-|[HIST1H1E](../HIST1H1E)|1 |
44
-|[ITPKB](../ITPKB)|1 |
45
-|[PIM2](../PIM2)|1 |
46
-|[UBE2A](../UBE2A)|1 |
47
-|[WEE1](../WEE1)|1 |
48
-|[ZFP36L1](../ZFP36L1)|1 |
49
-
50
-### Tier 2
51
-|New gene|PMBL tier|
52
-|:-|:-:|
53
-|[ARIH2](../ARIH2)|2 |
54
-|[BCL7A](../BCL7A)|2 |
55
-|[DMD](../DMD)|2 |
56
-|[EGR1](../EGR1)|2 |
57
-|[HECW2](../HECW2)|2 |
58
-|[HELLS](../HELLS)|2 |
59
-|[HIST1H3B](../HIST1H3B)|2 |
60
-|[HIST1H4C](../HIST1H4C)|2 |
61
-|[MPDZ](../MPDZ)|2 |
62
-|[NEK1](../NEK1)|2 |
63
-|[RANBP2](../RANBP2)|2 |
64
-|[SENP7](../SENP7)|2 |
65
-|[SETDB1](../SETDB1)|2 |
66
-|[SIAH2](../SIAH2)|2 |
67
-|[TBC1D15](../TBC1D15)|2 |
68
-|[TICRR](../TICRR)|2 |
69
-|[TRIP11](../TRIP11)|2 |
70
-|[ZNF217](../ZNF217)|2 |
71
-
72
-
73
-# Details
74
-
papers/richterRecurrentMutationID32012.md
... ...
@@ -0,0 +1,46 @@
1
+---
2
+title: ''
3
+bibliography: 'morinlab.bib'
4
+---
5
+
6
+# @richterRecurrentMutationID32012a
7
+## Summary of novel genes
8
+
9
+|Entity| Tier 1 genes| Tier 2 genes|
10
+|:-:|:-:|:-:|
11
+|BL|5|0|
12
+```mermaid
13
+---
14
+config:
15
+ sankey:
16
+ showValues: true
17
+ linkColor: target
18
+ width: 600
19
+ height: 300
20
+ nodeAlignment: right
21
+ prefix: '('
22
+ suffix: ' genes)'
23
+---
24
+sankey-beta
25
+This study, New Tier 1, 5
26
+New Tier 1, BL Tier 1, 5
27
+This study, New Tier 2, 0
28
+New Tier 2, BL Tier 2, 0
29
+All other BL studies, BL Tier 1, 24
30
+All other BL studies, BL Tier 2, 157
31
+```
32
+
33
+## Novel genes reported in this study
34
+
35
+### Tier 1
36
+|New gene|BL tier|
37
+|:-|:-:|
38
+|[CCND3](../CCND3)|1 |
39
+|[FBXO11](../FBXO11)|1 |
40
+|[ID3](../ID3)|1 |
41
+|[RHOA](../RHOA)|1 |
42
+|[SMARCA4](../SMARCA4)|1 |
43
+
44
+
45
+# Details
46
+
papers/richterRecurrentMutationID32012a.md
... ...
@@ -1,46 +0,0 @@
1
----
2
-title: ''
3
-bibliography: 'morinlab.bib'
4
----
5
-
6
-# @richterRecurrentMutationID32012a
7
-## Summary of novel genes
8
-
9
-|Entity| Tier 1 genes| Tier 2 genes|
10
-|:-:|:-:|:-:|
11
-|BL|5|0|
12
-```mermaid
13
----
14
-config:
15
- sankey:
16
- showValues: true
17
- linkColor: target
18
- width: 600
19
- height: 300
20
- nodeAlignment: right
21
- prefix: '('
22
- suffix: ' genes)'
23
----
24
-sankey-beta
25
-This study, New Tier 1, 5
26
-New Tier 1, BL Tier 1, 5
27
-This study, New Tier 2, 0
28
-New Tier 2, BL Tier 2, 0
29
-All other BL studies, BL Tier 1, 24
30
-All other BL studies, BL Tier 2, 157
31
-```
32
-
33
-## Novel genes reported in this study
34
-
35
-### Tier 1
36
-|New gene|BL tier|
37
-|:-|:-:|
38
-|[CCND3](../CCND3)|1 |
39
-|[FBXO11](../FBXO11)|1 |
40
-|[ID3](../ID3)|1 |
41
-|[RHOA](../RHOA)|1 |
42
-|[SMARCA4](../SMARCA4)|1 |
43
-
44
-
45
-# Details
46
-
papers/ritzRecurrentMutationsSTAT62009.md
... ...
@@ -0,0 +1,42 @@
1
+---
2
+title: ''
3
+bibliography: 'morinlab.bib'
4
+---
5
+
6
+# @ritzRecurrentMutationsSTAT62009a
7
+## Summary of novel genes
8
+
9
+|Entity| Tier 1 genes| Tier 2 genes|
10
+|:-:|:-:|:-:|
11
+|PMBL|1|0|
12
+```mermaid
13
+---
14
+config:
15
+ sankey:
16
+ showValues: true
17
+ linkColor: target
18
+ width: 600
19
+ height: 300
20
+ nodeAlignment: right
21
+ prefix: '('
22
+ suffix: ' genes)'
23
+---
24
+sankey-beta
25
+This study, New Tier 1, 1
26
+New Tier 1, PMBL Tier 1, 1
27
+This study, New Tier 2, 0
28
+New Tier 2, PMBL Tier 2, 0
29
+All other PMBL studies, PMBL Tier 1, 75
30
+All other PMBL studies, PMBL Tier 2, 82
31
+```
32
+
33
+## Novel genes reported in this study
34
+
35
+### Tier 1
36
+|New gene|PMBL tier|
37
+|:-|:-:|
38
+|[STAT6](../STAT6)|1 |
39
+
40
+
41
+# Details
42
+
papers/ritzRecurrentMutationsSTAT62009a.md
... ...
@@ -1,42 +0,0 @@
1
----
2
-title: ''
3
-bibliography: 'morinlab.bib'
4
----
5
-
6
-# @ritzRecurrentMutationsSTAT62009a
7
-## Summary of novel genes
8
-
9
-|Entity| Tier 1 genes| Tier 2 genes|
10
-|:-:|:-:|:-:|
11
-|PMBL|1|0|
12
-```mermaid
13
----
14
-config:
15
- sankey:
16
- showValues: true
17
- linkColor: target
18
- width: 600
19
- height: 300
20
- nodeAlignment: right
21
- prefix: '('
22
- suffix: ' genes)'
23
----
24
-sankey-beta
25
-This study, New Tier 1, 1
26
-New Tier 1, PMBL Tier 1, 1
27
-This study, New Tier 2, 0
28
-New Tier 2, PMBL Tier 2, 0
29
-All other PMBL studies, PMBL Tier 1, 75
30
-All other PMBL studies, PMBL Tier 2, 82
31
-```
32
-
33
-## Novel genes reported in this study
34
-
35
-### Tier 1
36
-|New gene|PMBL tier|
37
-|:-|:-:|
38
-|[STAT6](../STAT6)|1 |
39
-
40
-
41
-# Details
42
-
papers/rossiAlterationBIRC3Multiple2011.md
... ...
@@ -0,0 +1,50 @@
1
+---
2
+title: ''
3
+bibliography: 'morinlab.bib'
4
+---
5
+
6
+# @rossiAlterationBIRC3Multiple2011a
7
+## Summary of novel genes
8
+
9
+|Entity| Tier 1 genes| Tier 2 genes|
10
+|:-:|:-:|:-:|
11
+|MZL|4|1|
12
+```mermaid
13
+---
14
+config:
15
+ sankey:
16
+ showValues: true
17
+ linkColor: target
18
+ width: 600
19
+ height: 300
20
+ nodeAlignment: right
21
+ prefix: '('
22
+ suffix: ' genes)'
23
+---
24
+sankey-beta
25
+This study, New Tier 1, 4
26
+New Tier 1, MZL Tier 1, 4
27
+This study, New Tier 2, 1
28
+New Tier 2, MZL Tier 2, 1
29
+All other MZL studies, MZL Tier 1, 38
30
+All other MZL studies, MZL Tier 2, 73
31
+```
32
+
33
+## Novel genes reported in this study
34
+
35
+### Tier 1
36
+|New gene|MZL tier|
37
+|:-|:-:|
38
+|[BIRC3](../BIRC3)|1 |
39
+|[MAP3K14](../MAP3K14)|1 |
40
+|[TNFAIP3](../TNFAIP3)|1 |
41
+|[TRAF3](../TRAF3)|1 |
42
+
43
+### Tier 2
44
+|New gene|MZL tier|
45
+|:-|:-:|
46
+|[IKBKB](../IKBKB)|2 |
47
+
48
+
49
+# Details
50
+
papers/rossiAlterationBIRC3Multiple2011a.md
... ...
@@ -1,50 +0,0 @@
1
----
2
-title: ''
3
-bibliography: 'morinlab.bib'
4
----
5
-
6
-# @rossiAlterationBIRC3Multiple2011a
7
-## Summary of novel genes
8
-
9
-|Entity| Tier 1 genes| Tier 2 genes|
10
-|:-:|:-:|:-:|
11
-|MZL|4|1|
12
-```mermaid
13
----
14
-config:
15
- sankey:
16
- showValues: true
17
- linkColor: target
18
- width: 600
19
- height: 300
20
- nodeAlignment: right
21
- prefix: '('
22
- suffix: ' genes)'
23
----
24
-sankey-beta
25
-This study, New Tier 1, 4
26
-New Tier 1, MZL Tier 1, 4
27
-This study, New Tier 2, 1
28
-New Tier 2, MZL Tier 2, 1
29
-All other MZL studies, MZL Tier 1, 38
30
-All other MZL studies, MZL Tier 2, 73
31
-```
32
-
33
-## Novel genes reported in this study
34
-
35
-### Tier 1
36
-|New gene|MZL tier|
37
-|:-|:-:|
38
-|[BIRC3](../BIRC3)|1 |
39
-|[MAP3K14](../MAP3K14)|1 |
40
-|[TNFAIP3](../TNFAIP3)|1 |
41
-|[TRAF3](../TRAF3)|1 |
42
-
43
-### Tier 2
44
-|New gene|MZL tier|
45
-|:-|:-:|
46
-|[IKBKB](../IKBKB)|2 |
47
-
48
-
49
-# Details
50
-
papers/sarkozyMutationalLandscapeGray2021.md
... ...
@@ -0,0 +1,56 @@
1
+---
2
+title: ''
3
+bibliography: 'morinlab.bib'
4
+---
5
+
6
+# @sarkozyMutationalLandscapeGray2021a
7
+## Summary of novel genes
8
+
9
+|Entity| Tier 1 genes| Tier 2 genes|
10
+|:-:|:-:|:-:|
11
+|PMBL|5|6|
12
+```mermaid
13
+---
14
+config:
15
+ sankey:
16
+ showValues: true
17
+ linkColor: target
18
+ width: 600
19
+ height: 300
20
+ nodeAlignment: right
21
+ prefix: '('
22
+ suffix: ' genes)'
23
+---
24
+sankey-beta
25
+This study, New Tier 1, 5
26
+New Tier 1, PMBL Tier 1, 5
27
+This study, New Tier 2, 6
28
+New Tier 2, PMBL Tier 2, 6
29
+All other PMBL studies, PMBL Tier 1, 71
30
+All other PMBL studies, PMBL Tier 2, 76
31
+```
32
+
33
+## Novel genes reported in this study
34
+
35
+### Tier 1
36
+|New gene|PMBL tier|
37
+|:-|:-:|
38
+|[BIRC6](../BIRC6)|1 |
39
+|[BTG1](../BTG1)|1 |
40
+|[HIST1H1B](../HIST1H1B)|1 |
41
+|[KMT2C](../KMT2C)|1 |
42
+|[SPEN](../SPEN)|1 |
43
+
44
+### Tier 2
45
+|New gene|PMBL tier|
46
+|:-|:-:|
47
+|[ABCA13](../ABCA13)|2 |
48
+|[BCL2](../BCL2)|2 |
49
+|[LRRN3](../LRRN3)|2 |
50
+|[MFHAS1](../MFHAS1)|2 |
51
+|[NCOR2](../NCOR2)|2 |
52
+|[RELN](../RELN)|2 |
53
+
54
+
55
+# Details
56
+
papers/sarkozyMutationalLandscapeGray2021a.md
... ...
@@ -1,56 +0,0 @@
1
----
2
-title: ''
3
-bibliography: 'morinlab.bib'
4
----
5
-
6
-# @sarkozyMutationalLandscapeGray2021a
7
-## Summary of novel genes
8
-
9
-|Entity| Tier 1 genes| Tier 2 genes|
10
-|:-:|:-:|:-:|
11
-|PMBL|5|6|
12
-```mermaid
13
----
14
-config:
15
- sankey:
16
- showValues: true
17
- linkColor: target
18
- width: 600
19
- height: 300
20
- nodeAlignment: right
21
- prefix: '('
22
- suffix: ' genes)'
23
----
24
-sankey-beta
25
-This study, New Tier 1, 5
26
-New Tier 1, PMBL Tier 1, 5
27
-This study, New Tier 2, 6
28
-New Tier 2, PMBL Tier 2, 6
29
-All other PMBL studies, PMBL Tier 1, 71
30
-All other PMBL studies, PMBL Tier 2, 76
31
-```
32
-
33
-## Novel genes reported in this study
34
-
35
-### Tier 1
36
-|New gene|PMBL tier|
37
-|:-|:-:|
38
-|[BIRC6](../BIRC6)|1 |
39
-|[BTG1](../BTG1)|1 |
40
-|[HIST1H1B](../HIST1H1B)|1 |
41
-|[KMT2C](../KMT2C)|1 |
42
-|[SPEN](../SPEN)|1 |
43
-
44
-### Tier 2
45
-|New gene|PMBL tier|
46
-|:-|:-:|
47
-|[ABCA13](../ABCA13)|2 |
48
-|[BCL2](../BCL2)|2 |
49
-|[LRRN3](../LRRN3)|2 |
50
-|[MFHAS1](../MFHAS1)|2 |
51
-|[NCOR2](../NCOR2)|2 |
52
-|[RELN](../RELN)|2 |
53
-
54
-
55
-# Details
56
-
papers/schmitzGeneticsPathogenesisDiffuse2018.md
... ...
@@ -0,0 +1,61 @@
1
+---
2
+title: ''
3
+bibliography: 'morinlab.bib'
4
+---
5
+
6
+# @schmitzGeneticsPathogenesisDiffuse2018a
7
+## Summary of novel genes
8
+
9
+|Entity| Tier 1 genes| Tier 2 genes|
10
+|:-:|:-:|:-:|
11
+|DLBCL|7|9|
12
+```mermaid
13
+---
14
+config:
15
+ sankey:
16
+ showValues: true
17
+ linkColor: target
18
+ width: 600
19
+ height: 300
20
+ nodeAlignment: right
21
+ prefix: '('
22
+ suffix: ' genes)'
23
+---
24
+sankey-beta
25
+This study, New Tier 1, 7
26
+New Tier 1, DLBCL Tier 1, 7
27
+This study, New Tier 2, 9
28
+New Tier 2, DLBCL Tier 2, 9
29
+All other DLBCL studies, DLBCL Tier 1, 121
30
+All other DLBCL studies, DLBCL Tier 2, 189
31
+```
32
+
33
+## Novel genes reported in this study
34
+
35
+### Tier 1
36
+|New gene|DLBCL tier|
37
+|:-|:-:|
38
+|[CXCR5](../CXCR5)|1 |
39
+|[DDX3X](../DDX3X)|1 |
40
+|[DTX1](../DTX1)|1 |
41
+|[HIST2H2BE](../HIST2H2BE)|1 |
42
+|[ITPKB](../ITPKB)|1 |
43
+|[NOL9](../NOL9)|1 |
44
+|[WEE1](../WEE1)|1 |
45
+
46
+### Tier 2
47
+|New gene|DLBCL tier|
48
+|:-|:-:|
49
+|[FOXC1](../FOXC1)|2 |
50
+|[GPC5](../GPC5)|2 |
51
+|[GSG2](../GSG2)|2 |
52
+|[KLHL21](../KLHL21)|2 |
53
+|[LAMA5](../LAMA5)|2 |
54
+|[MYBPC2](../MYBPC2)|2 |
55
+|[PAPOLG](../PAPOLG)|2 |
56
+|[PRKDC](../PRKDC)|2 |
57
+|[TAP1](../TAP1)|2 |
58
+
59
+
60
+# Details
61
+
papers/schmitzGeneticsPathogenesisDiffuse2018a.md
... ...
@@ -1,61 +0,0 @@
1
----
2
-title: ''
3
-bibliography: 'morinlab.bib'
4
----
5
-
6
-# @schmitzGeneticsPathogenesisDiffuse2018a
7
-## Summary of novel genes
8
-
9
-|Entity| Tier 1 genes| Tier 2 genes|
10
-|:-:|:-:|:-:|
11
-|DLBCL|7|9|
12
-```mermaid
13
----
14
-config:
15
- sankey:
16
- showValues: true
17
- linkColor: target
18
- width: 600
19
- height: 300
20
- nodeAlignment: right
21
- prefix: '('
22
- suffix: ' genes)'
23
----
24
-sankey-beta
25
-This study, New Tier 1, 7
26
-New Tier 1, DLBCL Tier 1, 7
27
-This study, New Tier 2, 9
28
-New Tier 2, DLBCL Tier 2, 9
29
-All other DLBCL studies, DLBCL Tier 1, 121
30
-All other DLBCL studies, DLBCL Tier 2, 189
31
-```
32
-
33
-## Novel genes reported in this study
34
-
35
-### Tier 1
36
-|New gene|DLBCL tier|
37
-|:-|:-:|
38
-|[CXCR5](../CXCR5)|1 |
39
-|[DDX3X](../DDX3X)|1 |
40
-|[DTX1](../DTX1)|1 |
41
-|[HIST2H2BE](../HIST2H2BE)|1 |
42
-|[ITPKB](../ITPKB)|1 |
43
-|[NOL9](../NOL9)|1 |
44
-|[WEE1](../WEE1)|1 |
45
-
46
-### Tier 2
47
-|New gene|DLBCL tier|
48
-|:-|:-:|
49
-|[FOXC1](../FOXC1)|2 |
50
-|[GPC5](../GPC5)|2 |
51
-|[GSG2](../GSG2)|2 |
52
-|[KLHL21](../KLHL21)|2 |
53
-|[LAMA5](../LAMA5)|2 |
54
-|[MYBPC2](../MYBPC2)|2 |
55
-|[PAPOLG](../PAPOLG)|2 |
56
-|[PRKDC](../PRKDC)|2 |
57
-|[TAP1](../TAP1)|2 |
58
-
59
-
60
-# Details
61
-
papers/schneiderAlterationsCD58Gene2015.md
... ...
@@ -0,0 +1,42 @@
1
+---
2
+title: ''
3
+bibliography: 'morinlab.bib'
4
+---
5
+
6
+# @schneiderAlterationsCD58Gene2015a
7
+## Summary of novel genes
8
+
9
+|Entity| Tier 1 genes| Tier 2 genes|
10
+|:-:|:-:|:-:|
11
+|PMBL|1|0|
12
+```mermaid
13
+---
14
+config:
15
+ sankey:
16
+ showValues: true
17
+ linkColor: target
18
+ width: 600
19
+ height: 300
20
+ nodeAlignment: right
21
+ prefix: '('
22
+ suffix: ' genes)'
23
+---
24
+sankey-beta
25
+This study, New Tier 1, 1
26
+New Tier 1, PMBL Tier 1, 1
27
+This study, New Tier 2, 0
28
+New Tier 2, PMBL Tier 2, 0
29
+All other PMBL studies, PMBL Tier 1, 75
30
+All other PMBL studies, PMBL Tier 2, 82
31
+```
32
+
33
+## Novel genes reported in this study
34
+
35
+### Tier 1
36
+|New gene|PMBL tier|
37
+|:-|:-:|
38
+|[CD58](../CD58)|1 |
39
+
40
+
41
+# Details
42
+
papers/schneiderAlterationsCD58Gene2015a.md
... ...
@@ -1,42 +0,0 @@
1
----
2
-title: ''
3
-bibliography: 'morinlab.bib'
4
----
5
-
6
-# @schneiderAlterationsCD58Gene2015a
7
-## Summary of novel genes
8
-
9
-|Entity| Tier 1 genes| Tier 2 genes|
10
-|:-:|:-:|:-:|
11
-|PMBL|1|0|
12
-```mermaid
13
----
14
-config:
15
- sankey:
16
- showValues: true
17
- linkColor: target
18
- width: 600
19
- height: 300
20
- nodeAlignment: right
21
- prefix: '('
22
- suffix: ' genes)'
23
----
24
-sankey-beta
25
-This study, New Tier 1, 1
26
-New Tier 1, PMBL Tier 1, 1
27
-This study, New Tier 2, 0
28
-New Tier 2, PMBL Tier 2, 0
29
-All other PMBL studies, PMBL Tier 1, 75
30
-All other PMBL studies, PMBL Tier 2, 82
31
-```
32
-
33
-## Novel genes reported in this study
34
-
35
-### Tier 1
36
-|New gene|PMBL tier|
37
-|:-|:-:|
38
-|[CD58](../CD58)|1 |
39
-
40
-
41
-# Details
42
-
papers/tiacciBRAFMutationsHairycell2011.md
... ...
@@ -0,0 +1,42 @@
1
+---
2
+title: ''
3
+bibliography: 'morinlab.bib'
4
+---
5
+
6
+# @tiacciBRAFMutationsHairycell2011a
7
+## Summary of novel genes
8
+
9
+|Entity| Tier 1 genes| Tier 2 genes|
10
+|:-:|:-:|:-:|
11
+|DLBCL|1|0|
12
+```mermaid
13
+---
14
+config:
15
+ sankey:
16
+ showValues: true
17
+ linkColor: target
18
+ width: 600
19
+ height: 300
20
+ nodeAlignment: right
21
+ prefix: '('
22
+ suffix: ' genes)'
23
+---
24
+sankey-beta
25
+This study, New Tier 1, 1
26
+New Tier 1, DLBCL Tier 1, 1
27
+This study, New Tier 2, 0
28
+New Tier 2, DLBCL Tier 2, 0
29
+All other DLBCL studies, DLBCL Tier 1, 127
30
+All other DLBCL studies, DLBCL Tier 2, 198
31
+```
32
+
33
+## Novel genes reported in this study
34
+
35
+### Tier 1
36
+|New gene|DLBCL tier|
37
+|:-|:-:|
38
+|[BRAF](../BRAF)|1 |
39
+
40
+
41
+# Details
42
+
papers/tiacciBRAFMutationsHairycell2011a.md
... ...
@@ -1,42 +0,0 @@
1
----
2
-title: ''
3
-bibliography: 'morinlab.bib'
4
----
5
-
6
-# @tiacciBRAFMutationsHairycell2011a
7
-## Summary of novel genes
8
-
9
-|Entity| Tier 1 genes| Tier 2 genes|
10
-|:-:|:-:|:-:|
11
-|DLBCL|1|0|
12
-```mermaid
13
----
14
-config:
15
- sankey:
16
- showValues: true
17
- linkColor: target
18
- width: 600
19
- height: 300
20
- nodeAlignment: right
21
- prefix: '('
22
- suffix: ' genes)'
23
----
24
-sankey-beta
25
-This study, New Tier 1, 1
26
-New Tier 1, DLBCL Tier 1, 1
27
-This study, New Tier 2, 0
28
-New Tier 2, DLBCL Tier 2, 0
29
-All other DLBCL studies, DLBCL Tier 1, 127
30
-All other DLBCL studies, DLBCL Tier 2, 198
31
-```
32
-
33
-## Novel genes reported in this study
34
-
35
-### Tier 1
36
-|New gene|DLBCL tier|
37
-|:-|:-:|
38
-|[BRAF](../BRAF)|1 |
39
-
40
-
41
-# Details
42
-
papers/wenigerMutationsTumorSuppressor2006.md
... ...
@@ -0,0 +1,47 @@
1
+---
2
+title: ''
3
+bibliography: 'morinlab.bib'
4
+---
5
+
6
+# @wenigerMutationsTumorSuppressor2006a
7
+## Summary of novel genes
8
+
9
+|Entity| Tier 1 genes| Tier 2 genes|
10
+|:-:|:-:|:-:|
11
+|PMBL|1|1|
12
+```mermaid
13
+---
14
+config:
15
+ sankey:
16
+ showValues: true
17
+ linkColor: target
18
+ width: 600
19
+ height: 300
20
+ nodeAlignment: right
21
+ prefix: '('
22
+ suffix: ' genes)'
23
+---
24
+sankey-beta
25
+This study, New Tier 1, 1
26
+New Tier 1, PMBL Tier 1, 1
27
+This study, New Tier 2, 1
28
+New Tier 2, PMBL Tier 2, 1
29
+All other PMBL studies, PMBL Tier 1, 75
30
+All other PMBL studies, PMBL Tier 2, 81
31
+```
32
+
33
+## Novel genes reported in this study
34
+
35
+### Tier 1
36
+|New gene|PMBL tier|
37
+|:-|:-:|
38
+|[SOCS1](../SOCS1)|1 |
39
+
40
+### Tier 2
41
+|New gene|PMBL tier|
42
+|:-|:-:|
43
+|[GPR126](../GPR126)|2 |
44
+
45
+
46
+# Details
47
+
papers/wenigerMutationsTumorSuppressor2006a.md
... ...
@@ -1,47 +0,0 @@
1
----
2
-title: ''
3
-bibliography: 'morinlab.bib'
4
----
5
-
6
-# @wenigerMutationsTumorSuppressor2006a
7
-## Summary of novel genes
8
-
9
-|Entity| Tier 1 genes| Tier 2 genes|
10
-|:-:|:-:|:-:|
11
-|PMBL|1|1|
12
-```mermaid
13
----
14
-config:
15
- sankey:
16
- showValues: true
17
- linkColor: target
18
- width: 600
19
- height: 300
20
- nodeAlignment: right
21
- prefix: '('
22
- suffix: ' genes)'
23
----
24
-sankey-beta
25
-This study, New Tier 1, 1
26
-New Tier 1, PMBL Tier 1, 1
27
-This study, New Tier 2, 1
28
-New Tier 2, PMBL Tier 2, 1
29
-All other PMBL studies, PMBL Tier 1, 75
30
-All other PMBL studies, PMBL Tier 2, 81
31
-```
32
-
33
-## Novel genes reported in this study
34
-
35
-### Tier 1
36
-|New gene|PMBL tier|
37
-|:-|:-:|
38
-|[SOCS1](../SOCS1)|1 |
39
-
40
-### Tier 2
41
-|New gene|PMBL tier|
42
-|:-|:-:|
43
-|[GPR126](../GPR126)|2 |
44
-
45
-
46
-# Details
47
-
papers/yanBCRTLRSignaling2012.md
... ...
@@ -0,0 +1,43 @@
1
+---
2
+title: ''
3
+bibliography: 'morinlab.bib'
4
+---
5
+
6
+# @yanBCRTLRSignaling2012a
7
+## Summary of novel genes
8
+
9
+|Entity| Tier 1 genes| Tier 2 genes|
10
+|:-:|:-:|:-:|
11
+|MZL|2|0|
12
+```mermaid
13
+---
14
+config:
15
+ sankey:
16
+ showValues: true
17
+ linkColor: target
18
+ width: 600
19
+ height: 300
20
+ nodeAlignment: right
21
+ prefix: '('
22
+ suffix: ' genes)'
23
+---
24
+sankey-beta
25
+This study, New Tier 1, 2
26
+New Tier 1, MZL Tier 1, 2
27
+This study, New Tier 2, 0
28
+New Tier 2, MZL Tier 2, 0
29
+All other MZL studies, MZL Tier 1, 40
30
+All other MZL studies, MZL Tier 2, 74
31
+```
32
+
33
+## Novel genes reported in this study
34
+
35
+### Tier 1
36
+|New gene|MZL tier|
37
+|:-|:-:|
38
+|[CARD11](../CARD11)|1 |
39
+|[MYD88](../MYD88)|1 |
40
+
41
+
42
+# Details
43
+
papers/yanBCRTLRSignaling2012a.md
... ...
@@ -1,43 +0,0 @@
1
----
2
-title: ''
3
-bibliography: 'morinlab.bib'
4
----
5
-
6
-# @yanBCRTLRSignaling2012a
7
-## Summary of novel genes
8
-
9
-|Entity| Tier 1 genes| Tier 2 genes|
10
-|:-:|:-:|:-:|
11
-|MZL|2|0|
12
-```mermaid
13
----
14
-config:
15
- sankey:
16
- showValues: true
17
- linkColor: target
18
- width: 600
19
- height: 300
20
- nodeAlignment: right
21
- prefix: '('
22
- suffix: ' genes)'
23
----
24
-sankey-beta
25
-This study, New Tier 1, 2
26
-New Tier 1, MZL Tier 1, 2
27
-This study, New Tier 2, 0
28
-New Tier 2, MZL Tier 2, 0
29
-All other MZL studies, MZL Tier 1, 40
30
-All other MZL studies, MZL Tier 2, 74
31
-```
32
-
33
-## Novel genes reported in this study
34
-
35
-### Tier 1
36
-|New gene|MZL tier|
37
-|:-|:-:|
38
-|[CARD11](../CARD11)|1 |
39
-|[MYD88](../MYD88)|1 |
40
-
41
-
42
-# Details
43
-