DLBCL_genes.md
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@@ -13,341 +13,341 @@ link-citations: true
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### *128 total*
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16
-|Gene|Tier| Relevant references|
17
-|:-:|:-:|:-|
18
-|[ACTB](ACTB)|1, aSHM|[@lohrDiscoveryPrioritizationSomatic2012a; @wienandGenomicAnalysesFlowsorted2019b]|
19
-|[ACTG1](ACTG1)|1, aSHM|[@deschGenotypingCirculatingTumor2020; @spinaGeneticsNodalMarginal2016b; @hubschmannMutationalMechanismsShaping2021b]|
20
-|[ARID1A](ARID1A)|1|[@zhangGeneticHeterogeneityDiffuse2013; @rossiCodingGenomeSplenic2012c; @krysiakRecurrentSomaticMutations2017b; @wienandGenomicAnalysesFlowsorted2019b; @loveGeneticLandscapeMutations2012]|
21
-|[ATM](ATM)|1|[@beaLandscapeSomaticMutations2013; @braggioGenomicAnalysisMarginal2012; @reddyGeneticFunctionalDrivers2017]|
22
-|[B2M](B2M)|1|[@morinFrequentMutationHistonemodifying2011; @reichelFlowSortingExome2015a; @pararajalingamCodingNoncodingDrivers2020]|
23
-|[BCL10](BCL10)|1|[@russler-germainMutationsAssociatedProgression2023b; @morinFrequentMutationHistonemodifying2011; @spinaGeneticsNodalMarginal2016b]|
24
-|[BCL2](BCL2)|1, aSHM|[@sarkozyMutationalLandscapeGray2021a; @morinFrequentMutationHistonemodifying2011; @tanakaFrequentIncidenceSomatic1992; @burkhardtClinicalRelevanceMolecular2022b]|
25
-|[BCL6](BCL6)|1, aSHM|[@morinFrequentMutationHistonemodifying2011; @loveGeneticLandscapeMutations2012]|
26
-|[BCL7A](BCL7A)|1, aSHM|[@arthurGenomewideDiscoverySomatic2018; @krysiakRecurrentSomaticMutations2017b; @reichelFlowSortingExome2015a; @grandeGenomewideDiscoverySomatic2019]|
27
-|[BIRC6](BIRC6)|1|[@sarkozyMutationalLandscapeGray2021a; @reddyGeneticFunctionalDrivers2017]|
28
-|[BRAF](BRAF)|1|[@loveGeneticLandscapeMutations2012; @tiacciBRAFMutationsHairycell2011a]|
29
-|[BTG1](BTG1)|1, aSHM|[@burkhardtClinicalRelevanceMolecular2022b; @morinFrequentMutationHistonemodifying2011; @sarkozyMutationalLandscapeGray2021a]|
30
-|[BTG2](BTG2)|1, aSHM|[@loveGeneticLandscapeMutations2012; @morinFrequentMutationHistonemodifying2011]|
31
-|[BTK](BTK)|1|[@krysiakRecurrentSomaticMutations2017b; @albuquerqueEnhancingKnowledgeDiscovery2017a]|
32
-|[CARD11](CARD11)|1|[@morinFrequentMutationHistonemodifying2011; @wuGeneticHeterogeneityPrimary2016; @paneaWholeGenomeLandscape2019; @lenzOncogenicCARD11Mutations2008; @yanBCRTLRSignaling2012a]|
33
-|[CCND3](CCND3)|1|[@jalladesExomeSequencingIdentifies2017; @morinFrequentMutationHistonemodifying2011; @richterRecurrentMutationID32012a; @deschGenotypingCirculatingTumor2020]|
34
-|[CD58](CD58)|1|[@morinFrequentMutationHistonemodifying2011; @schneiderAlterationsCD58Gene2015a]|
35
-|[CD70](CD70)|1|[@russler-germainMutationsAssociatedProgression2023b; @morinFrequentMutationHistonemodifying2011]|
36
-|[CD79B](CD79B)|1|[@paneaWholeGenomeLandscape2019; @morinFrequentMutationHistonemodifying2011]|
37
-|[CD83](CD83)|1, aSHM|[@dunsCharacterizationDLBCLPMBL2021b; @paneaWholeGenomeLandscape2019; @russler-germainMutationsAssociatedProgression2023b; @morinMutationalStructuralAnalysis2013]|
38
-|[CDKN2A](CDKN2A)|1|[@morinMutationalStructuralAnalysis2013; @spinaGeneticsNodalMarginal2016b; @grandeGenomewideDiscoverySomatic2019]|
39
-|[CIITA](CIITA)|1, aSHM|[@mottokGenomicAlterationsCIITA2015b; @morinFrequentMutationHistonemodifying2011]|
40
-|[CREBBP](CREBBP)|1|[@dunsCharacterizationDLBCLPMBL2021b; @parryWholeExomeSequencing2013; @loveGeneticLandscapeMutations2012; @pasqualucciInactivatingMutationsAcetyltransferase2011a]|
41
-|[CXCR4](CXCR4)|1, aSHM|[@krysiakRecurrentSomaticMutations2017b; @paneaWholeGenomeLandscape2019; @khodabakhshiRecurrentTargetsAberrant2012]|
42
-|[CXCR5](CXCR5)|1|[@schmitzGeneticsPathogenesisDiffuse2018a; @mottokIntegrativeGenomicAnalysis2019b]|
43
-|[DDX3X](DDX3X)|1|[@schmitzBurkittLymphomaPathogenesis2012; @schmitzGeneticsPathogenesisDiffuse2018a; @mottokIntegrativeGenomicAnalysis2019b]|
44
-|[DTX1](DTX1)|1, aSHM|[@schmitzGeneticsPathogenesisDiffuse2018a; @gomezUltraDeepSequencingReveals2023; @rossiCodingGenomeSplenic2012c; @paneaWholeGenomeLandscape2019]|
45
-|[DUSP2](DUSP2)|1, aSHM|[@dunsCharacterizationDLBCLPMBL2021b; @morinMutationalStructuralAnalysis2013]|
46
-|[EBF1](EBF1)|1, aSHM|[@reichelFlowSortingExome2015a; @bohleRoleEarlyBcell2013; @thomasGeneticSubgroupsInform2023]|
47
-|[EEF1A1](EEF1A1)|1|[@hubschmannMutationalMechanismsShaping2021b; @reichelFlowSortingExome2015a]|
48
-|[EP300](EP300)|1|[@rossiCodingGenomeSplenic2012c; @paneaWholeGenomeLandscape2019; @pasqualucciInactivatingMutationsAcetyltransferase2011a]|
49
-|[ETS1](ETS1)|1, aSHM|[@paneaWholeGenomeLandscape2019; @morinFrequentMutationHistonemodifying2011]|
50
-|[ETV6](ETV6)|1, aSHM|[@arthurGenomewideDiscoverySomatic2018]|
51
-|[EZH2](EZH2)|1|[@loveGeneticLandscapeMutations2012; @morinSomaticMutationsAltering2010a; @mottokIntegrativeGenomicAnalysis2019b]|
52
-|[FAS](FAS)|1|[@spinaGeneticsNodalMarginal2016b; @schollMutationsRegionFAS2007]|
53
-|[FBXO11](FBXO11)|1|[@parryWholeExomeSequencing2013; @hubschmannMutationalMechanismsShaping2021b; @richterRecurrentMutationID32012a]|
54
-|[FBXW7](FBXW7)|1|[@zhangGeneticHeterogeneityDiffuse2013]|
55
-|[FOXO1](FOXO1)|1|[@schmitzBurkittLymphomaPathogenesis2012; @dunsCharacterizationDLBCLPMBL2021b; @morinFrequentMutationHistonemodifying2011]|
56
-|[GNA13](GNA13)|1|[@morinFrequentMutationHistonemodifying2011; @loveGeneticLandscapeMutations2012; @reichelFlowSortingExome2015a]|
57
-|[GNAI2](GNAI2)|1|[@morinMutationalStructuralAnalysis2013; @grandeGenomewideDiscoverySomatic2019]|
58
-|[GRB2](GRB2)|1|[@paneaWholeGenomeLandscape2019; @pasqualucciAnalysisCodingGenome2011]|
59
-|[GRHPR](GRHPR)|1, aSHM|[@arthurGenomewideDiscoverySomatic2018]|
60
-|[HIST1H1B](HIST1H1B)|1, aSHM|[@chapuyMolecularSubtypesDiffuse2018b; @sarkozyMutationalLandscapeGray2021a; @krysiakRecurrentSomaticMutations2017b]|
61
-|[HIST1H1C](HIST1H1C)|1, aSHM|[@morinFrequentMutationHistonemodifying2011; @paneaWholeGenomeLandscape2019]|
62
-|[HIST1H1D](HIST1H1D)|1, aSHM|[@krysiakRecurrentSomaticMutations2017b; @jalladesExomeSequencingIdentifies2017; @morinMutationalStructuralAnalysis2013]|
63
-|[HIST1H1E](HIST1H1E)|1, aSHM|[@grandeGenomewideDiscoverySomatic2019; @morinMutationalStructuralAnalysis2013; @reichelFlowSortingExome2015a; @krysiakRecurrentSomaticMutations2017b]|
64
-|[HIST1H2AC](HIST1H2AC)|1, aSHM|[@morinMutationalStructuralAnalysis2013; @krysiakRecurrentSomaticMutations2017b]|
65
-|[HIST1H2AM](HIST1H2AM)|1, aSHM|[@paneaWholeGenomeLandscape2019; @krysiakRecurrentSomaticMutations2017b]|
66
-|[HIST1H2BC](HIST1H2BC)|1, aSHM|[@mottokIntegrativeGenomicAnalysis2019b; @reddyGeneticFunctionalDrivers2017; @krysiakRecurrentSomaticMutations2017b]|
67
-|[HIST1H2BK](HIST1H2BK)|1, aSHM|[@rossiCodingGenomeSplenic2012c; @paneaWholeGenomeLandscape2019]|
68
-|[HIST1H3B](HIST1H3B)|1, aSHM|[@reichelFlowSortingExome2015a; @zhangGeneticHeterogeneityDiffuse2013]|
69
-|[HIST2H2BE](HIST2H2BE)|1, aSHM|[@schmitzGeneticsPathogenesisDiffuse2018a]|
70
-|[HLA-A](HLA-A)|1|[@deschGenotypingCirculatingTumor2020]|
71
-|[HLA-B](HLA-B)|1|[@wienandGenomicAnalysesFlowsorted2019b]|
72
-|[HLA-C](HLA-C)|1|[@gomezUltraDeepSequencingReveals2023]|
73
-|[HLA-DMB](HLA-DMB)|1||
74
-|[HNRNPU](HNRNPU)|1, aSHM|[@reddyGeneticFunctionalDrivers2017; @paneaWholeGenomeLandscape2019]|
75
-|[HVCN1](HVCN1)|1|[@krysiakRecurrentSomaticMutations2017b]|
76
-|[IKZF3](IKZF3)|1|[@morinMutationalStructuralAnalysis2013; @paneaWholeGenomeLandscape2019]|
77
-|[IL4R](IL4R)|1, aSHM|[@dunsCharacterizationDLBCLPMBL2021b; @viganoSomaticIL4RMutations2018b]|
78
-|[IRF4](IRF4)|1, aSHM|[@mottokIntegrativeGenomicAnalysis2019b; @morinFrequentMutationHistonemodifying2011]|
79
-|[IRF8](IRF8)|1, aSHM|[@paneaWholeGenomeLandscape2019; @mottokIntegrativeGenomicAnalysis2019b; @morinFrequentMutationHistonemodifying2011]|
80
-|[ITPKB](ITPKB)|1, aSHM|[@schmitzGeneticsPathogenesisDiffuse2018a; @reichelFlowSortingExome2015a]|
81
-|[KLF2](KLF2)|1, aSHM|[@jalladesExomeSequencingIdentifies2017; @deschGenotypingCirculatingTumor2020; @pasqualucciAnalysisCodingGenome2011]|
82
-|[KLHL14](KLHL14)|1|[@zhangGeneticHeterogeneityDiffuse2013]|
83
-|[KLHL6](KLHL6)|1, aSHM|[@morinFrequentMutationHistonemodifying2011; @paneaWholeGenomeLandscape2019; @ganapathiGeneticLandscapeDural2016]|
84
-|[KMT2C](KMT2C)|1|[@zhangGeneticHeterogeneityDiffuse2013; @sarkozyMutationalLandscapeGray2021a; @zhangGenomicLandscapeMantle2014; @zhouSporadicEndemicBurkitt2019]|
85
-|[KMT2D](KMT2D)|1|[@grandeGenomewideDiscoverySomatic2019; @beaLandscapeSomaticMutations2013; @deschGenotypingCirculatingTumor2020; @rossiCodingGenomeSplenic2012c; @morinFrequentMutationHistonemodifying2011]|
86
-|[KRAS](KRAS)|1|[@lohrDiscoveryPrioritizationSomatic2012a]|
87
-|[LCOR](LCOR)|1|[@arthurGenomewideDiscoverySomatic2018]|
88
-|[LTB](LTB)|1, aSHM|[@paneaWholeGenomeLandscape2019; @chapuyMolecularSubtypesDiffuse2018b; @deschGenotypingCirculatingTumor2020]|
89
-|[MEF2B](MEF2B)|1, aSHM|[@morinFrequentMutationHistonemodifying2011; @beaLandscapeSomaticMutations2013]|
90
-|[MEF2C](MEF2C)|1, aSHM|[@arthurGenomewideDiscoverySomatic2018]|
91
-|[MGA](MGA)|1|[@jalladesExomeSequencingIdentifies2017; @zhangGeneticHeterogeneityDiffuse2013]|
92
-|[MPEG1](MPEG1)|1|[@morinMutationalStructuralAnalysis2013]|
93
-|[MS4A1](MS4A1)|1, aSHM|[@mottokIntegrativeGenomicAnalysis2019b; @rushtonGeneticEvolutionaryPatterns2020]|
94
-|[MTOR](MTOR)|1|[@paneaWholeGenomeLandscape2019; @zhangGeneticHeterogeneityDiffuse2013]|
95
-|[MYC](MYC)|1, aSHM|[@jalladesExomeSequencingIdentifies2017; @johnstonCmycHypermutationBurkitt1992; @dunsCharacterizationDLBCLPMBL2021b; @pasqualucciHypermutationMultipleProtooncogenes2001a]|
96
-|[MYD88](MYD88)|1|[@ngoOncogenicallyActiveMYD882011a; @yanBCRTLRSignaling2012a]|
97
-|[NFKBIA](NFKBIA)|1|[@wienandGenomicAnalysesFlowsorted2019b; @lakeMutationsNFKBIAEncoding2009; @russler-germainMutationsAssociatedProgression2023b]|
98
-|[NFKBIE](NFKBIE)|1|[@mansouriFrequentNFKBIEDeletions2016; @morinGeneticLandscapesRelapsed2016; @pararajalingamCodingNoncodingDrivers2020]|
99
-|[NFKBIZ](NFKBIZ)|1, noncoding|[@morinGeneticLandscapesRelapsed2016]|
100
-|[NOL9](NOL9)|1, aSHM|[@spinaGeneticsNodalMarginal2016b; @schmitzGeneticsPathogenesisDiffuse2018a]|
101
-|[NOTCH1](NOTCH1)|1|[@rossiCodingGenomeSplenic2012c; @loveGeneticLandscapeMutations2012; @beaLandscapeSomaticMutations2013; @pasqualucciAnalysisCodingGenome2011]|
102
-|[NOTCH2](NOTCH2)|1|[@troenNOTCH2MutationsMarginal2008; @rossiCodingGenomeSplenic2012c; @paneaWholeGenomeLandscape2019; @beaLandscapeSomaticMutations2013]|
103
-|[OSBPL10](OSBPL10)|1, aSHM|[@arthurGenomewideDiscoverySomatic2018]|
104
-|[P2RY8](P2RY8)|1|[@lohrDiscoveryPrioritizationSomatic2012a; @muppidiLossSignalingGa132014b]|
105
-|[PIM1](PIM1)|1, aSHM|[@dunsCharacterizationDLBCLPMBL2021b; @pasqualucciHypermutationMultipleProtooncogenes2001a; @burkhardtClinicalRelevanceMolecular2022b]|
106
-|[PIM2](PIM2)|1, aSHM|[@arthurGenomewideDiscoverySomatic2018; @reichelFlowSortingExome2015a]|
107
-|[POU2AF1](POU2AF1)|1, aSHM|[@krysiakRecurrentSomaticMutations2017b]|
108
-|[POU2F2](POU2F2)|1|[@zhangGeneticHeterogeneityDiffuse2013; @krysiakRecurrentSomaticMutations2017b]|
109
-|[PRDM1](PRDM1)|1|[@pasqualucciInactivationPRDM1BLIMP12006a]|
110
-|[PTEN](PTEN)|1|[@loveGeneticLandscapeMutations2012]|
111
-|[PTPRD](PTPRD)|1|[@spinaGeneticsNodalMarginal2016b]|
112
-|[RB1](RB1)|1|[@zhangGenomicLandscapeMantle2014; @morinMutationalStructuralAnalysis2013]|
113
-|[RFX7](RFX7)|1|[@grandeGenomewideDiscoverySomatic2019]|
114
-|[RHOA](RHOA)|1|[@richterRecurrentMutationID32012a]|
115
-|[RRAGC](RRAGC)|1|[@okosunRecurrentMTORC1activatingRRAGC2016a]|
116
-|[S1PR2](S1PR2)|1, aSHM|[@morinFrequentMutationHistonemodifying2011; @muppidiLossSignalingGa132014b]|
117
-|[SETD1B](SETD1B)|1|[@reddyGeneticFunctionalDrivers2017]|
118
-|[SF3B1](SF3B1)|1|[@loveGeneticLandscapeMutations2012]|
119
-|[SGK1](SGK1)|1, aSHM|[@dunsCharacterizationDLBCLPMBL2021b; @morinFrequentMutationHistonemodifying2011]|
120
-|[SIN3A](SIN3A)|1|[@grandeGenomewideDiscoverySomatic2019; @rossiCodingGenomeSplenic2012c]|
121
-|[SMARCA4](SMARCA4)|1|[@zhangGeneticHeterogeneityDiffuse2013; @krysiakRecurrentSomaticMutations2017b; @nadeuGenomicEpigenomicInsights2020b; @richterRecurrentMutationID32012a]|
122
-|[SOCS1](SOCS1)|1, aSHM|[@morinFrequentMutationHistonemodifying2011; @wenigerMutationsTumorSuppressor2006a]|
123
-|[SPEN](SPEN)|1|[@rossiCodingGenomeSplenic2012c; @sarkozyMutationalLandscapeGray2021a]|
124
-|[STAT3](STAT3)|1|[@ohgamiSTAT3MutationsAre2014]|
125
-|[STAT6](STAT6)|1|[@yildizActivatingSTAT6Mutations2015c; @ritzRecurrentMutationsSTAT62009a]|
126
-|[TAF1](TAF1)|1|[@spinaGeneticsNodalMarginal2016b; @morinMutationalStructuralAnalysis2013]|
127
-|[TBL1XR1](TBL1XR1)|1|[@rossiCodingGenomeSplenic2012c; @mareschalWholeExomeSequencing2016]|
128
-|[TET2](TET2)|1|[@paneaWholeGenomeLandscape2019; @albuquerqueEnhancingKnowledgeDiscovery2017a]|
129
-|[TMEM30A](TMEM30A)|1|[@morinFrequentMutationHistonemodifying2011]|
130
-|[TMSB4X](TMSB4X)|1, aSHM|[@albuquerqueEnhancingKnowledgeDiscovery2017a]|
131
-|[TNFAIP3](TNFAIP3)|1|[@compagnoMutationsMultipleGenes2009a; @rossiAlterationBIRC3Multiple2011a; @schmitzTNFAIP3A20Tumor2009a]|
132
-|[TNFRSF14](TNFRSF14)|1|[@cheungAcquiredTNFRSF14Mutations2010a; @spinaGeneticsNodalMarginal2016b]|
133
-|[TOX](TOX)|1|[@reddyGeneticFunctionalDrivers2017]|
134
-|[TP53](TP53)|1|[@wildaInactivationARFMDM2p53Pathway2004; @beaLandscapeSomaticMutations2013; @tiacciPervasiveMutationsJAKSTAT2018b; @morinFrequentMutationHistonemodifying2011; @rossiCodingGenomeSplenic2012c]|
135
-|[TRRAP](TRRAP)|1|[@rossiCodingGenomeSplenic2012c; @parryWholeExomeSequencing2013]|
136
-|[UBE2A](UBE2A)|1|[@reichelFlowSortingExome2015a; @reddyGeneticFunctionalDrivers2017]|
137
-|[UNC5C](UNC5C)|1||
138
-|[USP7](USP7)|1|[@grandeGenomewideDiscoverySomatic2019]|
139
-|[VPS13B](VPS13B)|1||
140
-|[WEE1](WEE1)|1|[@reichelFlowSortingExome2015a; @schmitzGeneticsPathogenesisDiffuse2018a]|
141
-|[XPO1](XPO1)|1|[@mareschalWholeExomeSequencing2016; @jardinRecurrentMutationsExportin2016a]|
142
-|[ZC3H12A](ZC3H12A)|1|[@arthurGenomewideDiscoverySomatic2018]|
143
-|[ZFP36L1](ZFP36L1)|1, aSHM|[@reichelFlowSortingExome2015a; @paneaWholeGenomeLandscape2019; @morinFrequentMutationHistonemodifying2011]|
144
-|[ZNF292](ZNF292)|1|[@zhangGeneticHeterogeneityDiffuse2013]|
145
-|[ZNF608](ZNF608)|1, aSHM|[@krysiakRecurrentSomaticMutations2017b; @zhangGeneticHeterogeneityDiffuse2013]|
16
+|Gene|Tier| First DLBCL evidence | Other entities |
17
+|:-:|:-:|:-|:-|
18
+|[ACTB](ACTB)|1, aSHM|[@lohrDiscoveryPrioritizationSomatic2012a]|[@wienandGenomicAnalysesFlowsorted2019b]|
19
+|[ACTG1](ACTG1)|1, aSHM|[@hubschmannMutationalMechanismsShaping2021b]|[@deschGenotypingCirculatingTumor2020; @spinaGeneticsNodalMarginal2016b]|
20
+|[ARID1A](ARID1A)|1|[@zhangGeneticHeterogeneityDiffuse2013]|[@wienandGenomicAnalysesFlowsorted2019b; @rossiCodingGenomeSplenic2012c; @loveGeneticLandscapeMutations2012; @krysiakRecurrentSomaticMutations2017b]|
21
+|[ATM](ATM)|1|[@reddyGeneticFunctionalDrivers2017]|[@braggioGenomicAnalysisMarginal2012; @beaLandscapeSomaticMutations2013]|
22
+|[B2M](B2M)|1|[@morinFrequentMutationHistonemodifying2011]|[@pararajalingamCodingNoncodingDrivers2020; @reichelFlowSortingExome2015a]|
23
+|[BCL10](BCL10)|1|[@morinFrequentMutationHistonemodifying2011]|[@spinaGeneticsNodalMarginal2016b; @russler-germainMutationsAssociatedProgression2023b]|
24
+|[BCL2](BCL2)|1, aSHM|[@tanakaFrequentIncidenceSomatic1992]|[@sarkozyMutationalLandscapeGray2021a; @burkhardtClinicalRelevanceMolecular2022b; @morinFrequentMutationHistonemodifying2011]|
25
+|[BCL6](BCL6)|1, aSHM|[@morinFrequentMutationHistonemodifying2011]|[@loveGeneticLandscapeMutations2012]|
26
+|[BCL7A](BCL7A)|1, aSHM|[@arthurGenomewideDiscoverySomatic2018]|[@krysiakRecurrentSomaticMutations2017b; @grandeGenomewideDiscoverySomatic2019; @reichelFlowSortingExome2015a]|
27
+|[BIRC6](BIRC6)|1|[@reddyGeneticFunctionalDrivers2017]|[@sarkozyMutationalLandscapeGray2021a]|
28
+|[BRAF](BRAF)|1|[@tiacciBRAFMutationsHairycell2011a]|[@loveGeneticLandscapeMutations2012]|
29
+|[BTG1](BTG1)|1, aSHM|[@morinFrequentMutationHistonemodifying2011]|[@sarkozyMutationalLandscapeGray2021a; @burkhardtClinicalRelevanceMolecular2022b]|
30
+|[BTG2](BTG2)|1, aSHM|[@morinFrequentMutationHistonemodifying2011]|[@loveGeneticLandscapeMutations2012]|
31
+|[BTK](BTK)|1|[@albuquerqueEnhancingKnowledgeDiscovery2017a]|[@krysiakRecurrentSomaticMutations2017b]|
32
+|[CARD11](CARD11)|1|[@lenzOncogenicCARD11Mutations2008]|[@yanBCRTLRSignaling2012a; @wuGeneticHeterogeneityPrimary2016; @morinFrequentMutationHistonemodifying2011; @paneaWholeGenomeLandscape2019]|
33
+|[CCND3](CCND3)|1|[@morinFrequentMutationHistonemodifying2011]|[@deschGenotypingCirculatingTumor2020; @jalladesExomeSequencingIdentifies2017; @richterRecurrentMutationID32012a]|
34
+|[CD58](CD58)|1|[@morinFrequentMutationHistonemodifying2011]|[@schneiderAlterationsCD58Gene2015a]|
35
+|[CD70](CD70)|1|[@morinFrequentMutationHistonemodifying2011]|[@russler-germainMutationsAssociatedProgression2023b]|
36
+|[CD79B](CD79B)|1|[@morinFrequentMutationHistonemodifying2011]|[@paneaWholeGenomeLandscape2019]|
37
+|[CD83](CD83)|1, aSHM|[@morinMutationalStructuralAnalysis2013]|[@russler-germainMutationsAssociatedProgression2023b; @paneaWholeGenomeLandscape2019; @dunsCharacterizationDLBCLPMBL2021b]|
38
+|[CDKN2A](CDKN2A)|1|[@morinMutationalStructuralAnalysis2013]|[@grandeGenomewideDiscoverySomatic2019; @spinaGeneticsNodalMarginal2016b]|
39
+|[CIITA](CIITA)|1, aSHM|[@morinFrequentMutationHistonemodifying2011]|[@mottokGenomicAlterationsCIITA2015b]|
40
+|[CREBBP](CREBBP)|1|[@pasqualucciInactivatingMutationsAcetyltransferase2011a]|[@loveGeneticLandscapeMutations2012; @parryWholeExomeSequencing2013; @dunsCharacterizationDLBCLPMBL2021b]|
41
+|[CXCR4](CXCR4)|1, aSHM|[@khodabakhshiRecurrentTargetsAberrant2012]|[@paneaWholeGenomeLandscape2019; @krysiakRecurrentSomaticMutations2017b]|
42
+|[CXCR5](CXCR5)|1|[@schmitzGeneticsPathogenesisDiffuse2018a]|[@mottokIntegrativeGenomicAnalysis2019b]|
43
+|[DDX3X](DDX3X)|1|[@schmitzGeneticsPathogenesisDiffuse2018a]|[@mottokIntegrativeGenomicAnalysis2019b; @schmitzBurkittLymphomaPathogenesis2012]|
44
+|[DTX1](DTX1)|1, aSHM|[@schmitzGeneticsPathogenesisDiffuse2018a]|[@paneaWholeGenomeLandscape2019; @rossiCodingGenomeSplenic2012c; @gomezUltraDeepSequencingReveals2023]|
45
+|[DUSP2](DUSP2)|1, aSHM|[@morinMutationalStructuralAnalysis2013]|[@dunsCharacterizationDLBCLPMBL2021b]|
46
+|[EBF1](EBF1)|1, aSHM|[@bohleRoleEarlyBcell2013]|[@thomasGeneticSubgroupsInform2023; @reichelFlowSortingExome2015a]|
47
+|[EEF1A1](EEF1A1)|1|[@hubschmannMutationalMechanismsShaping2021b]|[@reichelFlowSortingExome2015a]|
48
+|[EP300](EP300)|1|[@pasqualucciInactivatingMutationsAcetyltransferase2011a]|[@rossiCodingGenomeSplenic2012c; @paneaWholeGenomeLandscape2019]|
49
+|[ETS1](ETS1)|1, aSHM|[@morinFrequentMutationHistonemodifying2011]|[@paneaWholeGenomeLandscape2019]|
50
+|[ETV6](ETV6)|1, aSHM|[@arthurGenomewideDiscoverySomatic2018]||
51
+|[EZH2](EZH2)|1|[@morinSomaticMutationsAltering2010a]|[@loveGeneticLandscapeMutations2012; @mottokIntegrativeGenomicAnalysis2019b]|
52
+|[FAS](FAS)|1|[@schollMutationsRegionFAS2007]|[@spinaGeneticsNodalMarginal2016b]|
53
+|[FBXO11](FBXO11)|1|[@hubschmannMutationalMechanismsShaping2021b]|[@richterRecurrentMutationID32012a; @parryWholeExomeSequencing2013]|
54
+|[FBXW7](FBXW7)|1|[@zhangGeneticHeterogeneityDiffuse2013]||
55
+|[FOXO1](FOXO1)|1|[@morinFrequentMutationHistonemodifying2011]|[@schmitzBurkittLymphomaPathogenesis2012; @dunsCharacterizationDLBCLPMBL2021b]|
56
+|[GNA13](GNA13)|1|[@morinFrequentMutationHistonemodifying2011]|[@reichelFlowSortingExome2015a; @loveGeneticLandscapeMutations2012]|
57
+|[GNAI2](GNAI2)|1|[@morinMutationalStructuralAnalysis2013]|[@grandeGenomewideDiscoverySomatic2019]|
58
+|[GRB2](GRB2)|1|[@pasqualucciAnalysisCodingGenome2011]|[@paneaWholeGenomeLandscape2019]|
59
+|[GRHPR](GRHPR)|1, aSHM|[@arthurGenomewideDiscoverySomatic2018]||
60
+|[HIST1H1B](HIST1H1B)|1, aSHM|[@chapuyMolecularSubtypesDiffuse2018b]|[@sarkozyMutationalLandscapeGray2021a; @krysiakRecurrentSomaticMutations2017b]|
61
+|[HIST1H1C](HIST1H1C)|1, aSHM|[@morinFrequentMutationHistonemodifying2011]|[@paneaWholeGenomeLandscape2019]|
62
+|[HIST1H1D](HIST1H1D)|1, aSHM|[@morinMutationalStructuralAnalysis2013]|[@jalladesExomeSequencingIdentifies2017; @krysiakRecurrentSomaticMutations2017b]|
63
+|[HIST1H1E](HIST1H1E)|1, aSHM|[@morinMutationalStructuralAnalysis2013]|[@grandeGenomewideDiscoverySomatic2019; @krysiakRecurrentSomaticMutations2017b; @reichelFlowSortingExome2015a]|
64
+|[HIST1H2AC](HIST1H2AC)|1, aSHM|[@morinMutationalStructuralAnalysis2013]|[@krysiakRecurrentSomaticMutations2017b]|
65
+|[HIST1H2AM](HIST1H2AM)|1, aSHM||[@paneaWholeGenomeLandscape2019; @krysiakRecurrentSomaticMutations2017b]|
66
+|[HIST1H2BC](HIST1H2BC)|1, aSHM|[@reddyGeneticFunctionalDrivers2017]|[@krysiakRecurrentSomaticMutations2017b; @mottokIntegrativeGenomicAnalysis2019b]|
67
+|[HIST1H2BK](HIST1H2BK)|1, aSHM||[@paneaWholeGenomeLandscape2019; @rossiCodingGenomeSplenic2012c]|
68
+|[HIST1H3B](HIST1H3B)|1, aSHM|[@zhangGeneticHeterogeneityDiffuse2013]|[@reichelFlowSortingExome2015a]|
69
+|[HIST2H2BE](HIST2H2BE)|1, aSHM|[@schmitzGeneticsPathogenesisDiffuse2018a]||
70
+|[HLA-A](HLA-A)|1||[@deschGenotypingCirculatingTumor2020]|
71
+|[HLA-B](HLA-B)|1||[@wienandGenomicAnalysesFlowsorted2019b]|
72
+|[HLA-C](HLA-C)|1||[@gomezUltraDeepSequencingReveals2023]|
73
+|[HLA-DMB](HLA-DMB)|1|||
74
+|[HNRNPU](HNRNPU)|1, aSHM|[@reddyGeneticFunctionalDrivers2017]|[@paneaWholeGenomeLandscape2019]|
75
+|[HVCN1](HVCN1)|1||[@krysiakRecurrentSomaticMutations2017b]|
76
+|[IKZF3](IKZF3)|1|[@morinMutationalStructuralAnalysis2013]|[@paneaWholeGenomeLandscape2019]|
77
+|[IL4R](IL4R)|1, aSHM|[@dunsCharacterizationDLBCLPMBL2021b]|[@viganoSomaticIL4RMutations2018b]|
78
+|[IRF4](IRF4)|1, aSHM|[@morinFrequentMutationHistonemodifying2011]|[@mottokIntegrativeGenomicAnalysis2019b]|
79
+|[IRF8](IRF8)|1, aSHM|[@morinFrequentMutationHistonemodifying2011]|[@paneaWholeGenomeLandscape2019; @mottokIntegrativeGenomicAnalysis2019b]|
80
+|[ITPKB](ITPKB)|1, aSHM|[@schmitzGeneticsPathogenesisDiffuse2018a]|[@reichelFlowSortingExome2015a]|
81
+|[KLF2](KLF2)|1, aSHM|[@pasqualucciAnalysisCodingGenome2011]|[@jalladesExomeSequencingIdentifies2017; @deschGenotypingCirculatingTumor2020]|
82
+|[KLHL14](KLHL14)|1|[@zhangGeneticHeterogeneityDiffuse2013]||
83
+|[KLHL6](KLHL6)|1, aSHM|[@morinFrequentMutationHistonemodifying2011]|[@ganapathiGeneticLandscapeDural2016; @paneaWholeGenomeLandscape2019]|
84
+|[KMT2C](KMT2C)|1|[@zhangGeneticHeterogeneityDiffuse2013]|[@sarkozyMutationalLandscapeGray2021a; @zhouSporadicEndemicBurkitt2019; @zhangGenomicLandscapeMantle2014]|
85
+|[KMT2D](KMT2D)|1|[@morinFrequentMutationHistonemodifying2011]|[@grandeGenomewideDiscoverySomatic2019; @rossiCodingGenomeSplenic2012c; @beaLandscapeSomaticMutations2013; @deschGenotypingCirculatingTumor2020]|
86
+|[KRAS](KRAS)|1|[@lohrDiscoveryPrioritizationSomatic2012a]||
87
+|[LCOR](LCOR)|1|[@arthurGenomewideDiscoverySomatic2018]||
88
+|[LTB](LTB)|1, aSHM|[@chapuyMolecularSubtypesDiffuse2018b]|[@paneaWholeGenomeLandscape2019; @deschGenotypingCirculatingTumor2020]|
89
+|[MEF2B](MEF2B)|1, aSHM|[@morinFrequentMutationHistonemodifying2011]|[@beaLandscapeSomaticMutations2013]|
90
+|[MEF2C](MEF2C)|1, aSHM|[@arthurGenomewideDiscoverySomatic2018]||
91
+|[MGA](MGA)|1|[@zhangGeneticHeterogeneityDiffuse2013]|[@jalladesExomeSequencingIdentifies2017]|
92
+|[MPEG1](MPEG1)|1|[@morinMutationalStructuralAnalysis2013]||
93
+|[MS4A1](MS4A1)|1, aSHM|[@rushtonGeneticEvolutionaryPatterns2020]|[@mottokIntegrativeGenomicAnalysis2019b]|
94
+|[MTOR](MTOR)|1|[@zhangGeneticHeterogeneityDiffuse2013]|[@paneaWholeGenomeLandscape2019]|
95
+|[MYC](MYC)|1, aSHM|[@pasqualucciHypermutationMultipleProtooncogenes2001a]|[@jalladesExomeSequencingIdentifies2017; @johnstonCmycHypermutationBurkitt1992; @dunsCharacterizationDLBCLPMBL2021b]|
96
+|[MYD88](MYD88)|1|[@ngoOncogenicallyActiveMYD882011a]|[@yanBCRTLRSignaling2012a]|
97
+|[NFKBIA](NFKBIA)|1|[@lakeMutationsNFKBIAEncoding2009]|[@russler-germainMutationsAssociatedProgression2023b; @wienandGenomicAnalysesFlowsorted2019b]|
98
+|[NFKBIE](NFKBIE)|1|[@morinGeneticLandscapesRelapsed2016]|[@pararajalingamCodingNoncodingDrivers2020; @mansouriFrequentNFKBIEDeletions2016]|
99
+|[NFKBIZ](NFKBIZ)|1, noncoding|[@morinGeneticLandscapesRelapsed2016]||
100
+|[NOL9](NOL9)|1, aSHM|[@schmitzGeneticsPathogenesisDiffuse2018a]|[@spinaGeneticsNodalMarginal2016b]|
101
+|[NOTCH1](NOTCH1)|1|[@pasqualucciAnalysisCodingGenome2011]|[@loveGeneticLandscapeMutations2012; @rossiCodingGenomeSplenic2012c; @beaLandscapeSomaticMutations2013]|
102
+|[NOTCH2](NOTCH2)|1|[@troenNOTCH2MutationsMarginal2008]|[@rossiCodingGenomeSplenic2012c; @beaLandscapeSomaticMutations2013; @paneaWholeGenomeLandscape2019]|
103
+|[OSBPL10](OSBPL10)|1, aSHM|[@arthurGenomewideDiscoverySomatic2018]||
104
+|[P2RY8](P2RY8)|1|[@lohrDiscoveryPrioritizationSomatic2012a]|[@muppidiLossSignalingGa132014b]|
105
+|[PIM1](PIM1)|1, aSHM|[@pasqualucciHypermutationMultipleProtooncogenes2001a]|[@burkhardtClinicalRelevanceMolecular2022b; @dunsCharacterizationDLBCLPMBL2021b]|
106
+|[PIM2](PIM2)|1, aSHM|[@arthurGenomewideDiscoverySomatic2018]|[@reichelFlowSortingExome2015a]|
107
+|[POU2AF1](POU2AF1)|1, aSHM||[@krysiakRecurrentSomaticMutations2017b]|
108
+|[POU2F2](POU2F2)|1|[@zhangGeneticHeterogeneityDiffuse2013]|[@krysiakRecurrentSomaticMutations2017b]|
109
+|[PRDM1](PRDM1)|1|[@pasqualucciInactivationPRDM1BLIMP12006a]||
110
+|[PTEN](PTEN)|1||[@loveGeneticLandscapeMutations2012]|
111
+|[PTPRD](PTPRD)|1||[@spinaGeneticsNodalMarginal2016b]|
112
+|[RB1](RB1)|1|[@morinMutationalStructuralAnalysis2013]|[@zhangGenomicLandscapeMantle2014]|
113
+|[RFX7](RFX7)|1||[@grandeGenomewideDiscoverySomatic2019]|
114
+|[RHOA](RHOA)|1||[@richterRecurrentMutationID32012a]|
115
+|[RRAGC](RRAGC)|1|[@okosunRecurrentMTORC1activatingRRAGC2016a]||
116
+|[S1PR2](S1PR2)|1, aSHM|[@morinFrequentMutationHistonemodifying2011]|[@muppidiLossSignalingGa132014b]|
117
+|[SETD1B](SETD1B)|1|[@reddyGeneticFunctionalDrivers2017]||
118
+|[SF3B1](SF3B1)|1||[@loveGeneticLandscapeMutations2012]|
119
+|[SGK1](SGK1)|1, aSHM|[@morinFrequentMutationHistonemodifying2011]|[@dunsCharacterizationDLBCLPMBL2021b]|
120
+|[SIN3A](SIN3A)|1||[@grandeGenomewideDiscoverySomatic2019; @rossiCodingGenomeSplenic2012c]|
121
+|[SMARCA4](SMARCA4)|1|[@zhangGeneticHeterogeneityDiffuse2013]|[@nadeuGenomicEpigenomicInsights2020b; @krysiakRecurrentSomaticMutations2017b; @richterRecurrentMutationID32012a]|
122
+|[SOCS1](SOCS1)|1, aSHM|[@morinFrequentMutationHistonemodifying2011]|[@wenigerMutationsTumorSuppressor2006a]|
123
+|[SPEN](SPEN)|1|[@rossiCodingGenomeSplenic2012c]|[@sarkozyMutationalLandscapeGray2021a]|
124
+|[STAT3](STAT3)|1|[@ohgamiSTAT3MutationsAre2014]||
125
+|[STAT6](STAT6)|1|[@yildizActivatingSTAT6Mutations2015c]|[@ritzRecurrentMutationsSTAT62009a]|
126
+|[TAF1](TAF1)|1|[@morinMutationalStructuralAnalysis2013]|[@spinaGeneticsNodalMarginal2016b]|
127
+|[TBL1XR1](TBL1XR1)|1|[@mareschalWholeExomeSequencing2016]|[@rossiCodingGenomeSplenic2012c]|
128
+|[TET2](TET2)|1|[@albuquerqueEnhancingKnowledgeDiscovery2017a]|[@paneaWholeGenomeLandscape2019]|
129
+|[TMEM30A](TMEM30A)|1|[@morinFrequentMutationHistonemodifying2011]||
130
+|[TMSB4X](TMSB4X)|1, aSHM|[@albuquerqueEnhancingKnowledgeDiscovery2017a]||
131
+|[TNFAIP3](TNFAIP3)|1|[@compagnoMutationsMultipleGenes2009a]|[@schmitzTNFAIP3A20Tumor2009a; @rossiAlterationBIRC3Multiple2011a]|
132
+|[TNFRSF14](TNFRSF14)|1|[@cheungAcquiredTNFRSF14Mutations2010a]|[@spinaGeneticsNodalMarginal2016b]|
133
+|[TOX](TOX)|1|[@reddyGeneticFunctionalDrivers2017]||
134
+|[TP53](TP53)|1||[@morinFrequentMutationHistonemodifying2011; @tiacciPervasiveMutationsJAKSTAT2018b; @rossiCodingGenomeSplenic2012c; @wildaInactivationARFMDM2p53Pathway2004; @beaLandscapeSomaticMutations2013]|
135
+|[TRRAP](TRRAP)|1|[@parryWholeExomeSequencing2013]|[@rossiCodingGenomeSplenic2012c]|
136
+|[UBE2A](UBE2A)|1|[@reddyGeneticFunctionalDrivers2017]|[@reichelFlowSortingExome2015a]|
137
+|[UNC5C](UNC5C)|1|||
138
+|[USP7](USP7)|1||[@grandeGenomewideDiscoverySomatic2019]|
139
+|[VPS13B](VPS13B)|1|||
140
+|[WEE1](WEE1)|1|[@schmitzGeneticsPathogenesisDiffuse2018a]|[@reichelFlowSortingExome2015a]|
141
+|[XPO1](XPO1)|1|[@mareschalWholeExomeSequencing2016]|[@jardinRecurrentMutationsExportin2016a]|
142
+|[ZC3H12A](ZC3H12A)|1|[@arthurGenomewideDiscoverySomatic2018]||
143
+|[ZFP36L1](ZFP36L1)|1, aSHM|[@morinFrequentMutationHistonemodifying2011]|[@reichelFlowSortingExome2015a; @paneaWholeGenomeLandscape2019]|
144
+|[ZNF292](ZNF292)|1|[@zhangGeneticHeterogeneityDiffuse2013]||
145
+|[ZNF608](ZNF608)|1, aSHM|[@zhangGeneticHeterogeneityDiffuse2013]|[@krysiakRecurrentSomaticMutations2017b]|
146 146
147 147
## Tier 2 DLBCL genes
148 148
149 149
### *198 total*
150 150
151
-|Gene|Tier| Relevant references|
152
-|:-:|:-:|:-|
153
-|[ABI3BP](ABI3BP)|2|[@morinMutationalStructuralAnalysis2013]|
154
-|[ADAMTS1](ADAMTS1)|2|[@hubschmannMutationalMechanismsShaping2021b]|
155
-|[AICDA](AICDA)|2, aSHM|[@arthurGenomewideDiscoverySomatic2018]|
156
-|[ANKRD12](ANKRD12)|2|[@hubschmannMutationalMechanismsShaping2021b]|
157
-|[ANKRD17](ANKRD17)|2|[@reddyGeneticFunctionalDrivers2017]|
158
-|[ARID1B](ARID1B)|2|[@reddyGeneticFunctionalDrivers2017]|
159
-|[ARID5B](ARID5B)|2|[@gomezUltraDeepSequencingReveals2023; @reddyGeneticFunctionalDrivers2017]|
160
-|[ATR](ATR)|2|[@reddyGeneticFunctionalDrivers2017]|
161
-|[BCL11A](BCL11A)|2, aSHM||
162
-|[BCOR](BCOR)|2|[@nadeuGenomicEpigenomicInsights2020b; @jalladesExomeSequencingIdentifies2017]|
163
-|[BCR](BCR)|2, aSHM||
164
-|[BIRC3](BIRC3)|2, aSHM|[@dunsCharacterizationDLBCLPMBL2021b; @arthurGenomewideDiscoverySomatic2018; @beaLandscapeSomaticMutations2013; @rossiAlterationBIRC3Multiple2011a]|
165
-|[BLK](BLK)|2, aSHM||
166
-|[BRINP3](BRINP3)|2|[@reddyGeneticFunctionalDrivers2017]|
167
-|[BTBD3](BTBD3)|2|[@reddyGeneticFunctionalDrivers2017]|
168
-|[CADPS2](CADPS2)|2|[@hubschmannMutationalMechanismsShaping2021b]|
169
-|[CASP8](CASP8)|2|[@reddyGeneticFunctionalDrivers2017]|
170
-|[CBLB](CBLB)|2|[@reddyGeneticFunctionalDrivers2017]|
171
-|[CCL4](CCL4)|2|[@chapuyMolecularSubtypesDiffuse2018b]|
172
-|[CD22](CD22)|2|[@reddyGeneticFunctionalDrivers2017]|
173
-|[CD274](CD274)|2|[@morinFrequentMutationHistonemodifying2011]|
174
-|[CD36](CD36)|2|[@pasqualucciAnalysisCodingGenome2011]|
175
-|[CD44](CD44)|2, aSHM|[@arthurGenomewideDiscoverySomatic2018]|
176
-|[CD74](CD74)|2, aSHM|[@arthurGenomewideDiscoverySomatic2018]|
177
-|[CDC73](CDC73)|2|[@reddyGeneticFunctionalDrivers2017; @loveGeneticLandscapeMutations2012]|
178
-|[CDH9](CDH9)|2|[@morinMutationalStructuralAnalysis2013]|
179
-|[CHD1](CHD1)|2|[@reddyGeneticFunctionalDrivers2017]|
180
-|[CHD8](CHD8)|2|[@reddyGeneticFunctionalDrivers2017; @grandeGenomewideDiscoverySomatic2019]|
181
-|[CHST2](CHST2)|2|[@reddyGeneticFunctionalDrivers2017]|
182
-|[CNOT2](CNOT2)|2|[@hubschmannMutationalMechanismsShaping2021b]|
183
-|[CNTNAP5](CNTNAP5)|2|[@morinMutationalStructuralAnalysis2013]|
184
-|[COQ7](COQ7)|2|[@chapuyMolecularSubtypesDiffuse2018b]|
185
-|[CRIP1](CRIP1)|2|[@chapuyMolecularSubtypesDiffuse2018b]|
186
-|[DAZAP1](DAZAP1)|2|[@pararajalingamCodingNoncodingDrivers2020]|
187
-|[DCAF6](DCAF6)|2|[@reddyGeneticFunctionalDrivers2017]|
188
-|[DDX10](DDX10)|2|[@reddyGeneticFunctionalDrivers2017]|
189
-|[DHX16](DHX16)|2|[@hubschmannMutationalMechanismsShaping2021b]|
190
-|[DICER1](DICER1)|2|[@reddyGeneticFunctionalDrivers2017]|
191
-|[DNAH5](DNAH5)|2|[@jalladesExomeSequencingIdentifies2017; @morinMutationalStructuralAnalysis2013]|
192
-|[DNM2](DNM2)|2|[@hubschmannMutationalMechanismsShaping2021b]|
193
-|[DNMT3A](DNMT3A)|2|[@reddyGeneticFunctionalDrivers2017]|
194
-|[DOCK1](DOCK1)|2|[@chapuyMolecularSubtypesDiffuse2018b]|
195
-|[DSG4](DSG4)|2|[@morinMutationalStructuralAnalysis2013]|
196
-|[EIF2AK3](EIF2AK3)|2, aSHM||
197
-|[EZR](EZR)|2, aSHM|[@deschGenotypingCirculatingTumor2020]|
198
-|[FAM102A](FAM102A)|2, aSHM||
199
-|[FAM38B](FAM38B)|2|[@morinMutationalStructuralAnalysis2013]|
200
-|[FANK1](FANK1)|2, aSHM||
201
-|[FAT4](FAT4)|2|[@zhangGenomicLandscapeMantle2014; @morinMutationalStructuralAnalysis2013; @parryWholeExomeSequencing2013]|
202
-|[FCRL3](FCRL3)|2, aSHM||
203
-|[FNBP1](FNBP1)|2, aSHM||
204
-|[FNDC1](FNDC1)|2|[@morinMutationalStructuralAnalysis2013]|
205
-|[FOXC1](FOXC1)|2|[@schmitzGeneticsPathogenesisDiffuse2018a]|
206
-|[FOXP1](FOXP1)|2, aSHM|[@reddyGeneticFunctionalDrivers2017]|
207
-|[FUBP1](FUBP1)|2|[@reddyGeneticFunctionalDrivers2017]|
208
-|[FUT5](FUT5)|2|[@chapuyMolecularSubtypesDiffuse2018b]|
209
-|[GABRA2](GABRA2)|2|[@chapuyMolecularSubtypesDiffuse2018b]|
210
-|[GAK](GAK)|2|[@hubschmannMutationalMechanismsShaping2021b]|
211
-|[GNAS](GNAS)|2|[@reddyGeneticFunctionalDrivers2017]|
212
-|[GOLGA5](GOLGA5)|2|[@reddyGeneticFunctionalDrivers2017]|
213
-|[GPC5](GPC5)|2|[@schmitzGeneticsPathogenesisDiffuse2018a]|
214
-|[GSG2](GSG2)|2|[@schmitzGeneticsPathogenesisDiffuse2018a]|
215
-|[HDAC7](HDAC7)|2|[@morinMutationalStructuralAnalysis2013]|
216
-|[HIST1H2AG](HIST1H2AG)|2, aSHM|[@morinMutationalStructuralAnalysis2013; @paneaWholeGenomeLandscape2019; @krysiakRecurrentSomaticMutations2017b; @rossiCodingGenomeSplenic2012c]|
217
-|[HLA-DMA](HLA-DMA)|2||
218
-|[HLA-DQA1](HLA-DQA1)|2|[@hubschmannMutationalMechanismsShaping2021b]|
219
-|[HNF1B](HNF1B)|2|[@pasqualucciAnalysisCodingGenome2011]|
220
-|[HNRNPD](HNRNPD)|2||
221
-|[HNRNPH1](HNRNPH1)|2, noncoding|[@pararajalingamCodingNoncodingDrivers2020]|
222
-|[HRAS](HRAS)|2|[@jalladesExomeSequencingIdentifies2017; @reddyGeneticFunctionalDrivers2017]|
223
-|[ID3](ID3)|2|[@spinaGeneticsNodalMarginal2016b; @richterRecurrentMutationID32012a; @schmitzBurkittLymphomaPathogenesis2012]|
224
-|[IER2](IER2)|2|[@morinMutationalStructuralAnalysis2013]|
225
-|[IFNGR1](IFNGR1)|2|[@morinMutationalStructuralAnalysis2013]|
226
-|[IGLL5](IGLL5)|2, aSHM|[@deschGenotypingCirculatingTumor2020; @russler-germainMutationsAssociatedProgression2023b; @paneaWholeGenomeLandscape2019]|
227
-|[IKBKB](IKBKB)|2|[@reddyGeneticFunctionalDrivers2017; @rossiAlterationBIRC3Multiple2011a; @wienandGenomicAnalysesFlowsorted2019b]|
228
-|[IKBKE](IKBKE)|2|[@hubschmannMutationalMechanismsShaping2021b]|
229
-|[IL16](IL16)|2||
230
-|[IL6](IL6)|2|[@chapuyMolecularSubtypesDiffuse2018b]|
231
-|[INO80](INO80)|2|[@zhangGeneticHeterogeneityDiffuse2013]|
232
-|[IRAG2](IRAG2)|2, aSHM||
233
-|[IRF1](IRF1)|2, aSHM|[@hubschmannMutationalMechanismsShaping2021b]|
234
-|[JAK1](JAK1)|2|[@mottokIntegrativeGenomicAnalysis2019b; @zhangGeneticHeterogeneityDiffuse2013]|
235
-|[JAK3](JAK3)|2|[@zhangGeneticHeterogeneityDiffuse2013]|
236
-|[JUNB](JUNB)|2|[@reddyGeneticFunctionalDrivers2017; @mottokIntegrativeGenomicAnalysis2019b]|
237
-|[KCMF1](KCMF1)|2|[@reddyGeneticFunctionalDrivers2017]|
238
-|[KLHL21](KLHL21)|2|[@schmitzGeneticsPathogenesisDiffuse2018a]|
239
-|[LAMA5](LAMA5)|2|[@schmitzGeneticsPathogenesisDiffuse2018a]|
240
-|[LAPTM5](LAPTM5)|2, aSHM|[@hubschmannMutationalMechanismsShaping2021b]|
241
-|[LIN54](LIN54)|2|[@reddyGeneticFunctionalDrivers2017]|
242
-|[LPP](LPP)|2, aSHM|[@arthurGenomewideDiscoverySomatic2018]|
243
-|[LRP12](LRP12)|2|[@hubschmannMutationalMechanismsShaping2021b]|
244
-|[LRRN3](LRRN3)|2|[@sarkozyMutationalLandscapeGray2021a; @morinMutationalStructuralAnalysis2013]|
245
-|[LYN](LYN)|2|[@chapuyMolecularSubtypesDiffuse2018b]|
246
-|[MAGT1](MAGT1)|2|[@reddyGeneticFunctionalDrivers2017]|
247
-|[MALAT1](MALAT1)|2, aSHM|[@arthurGenomewideDiscoverySomatic2018]|
248
-|[MAP2K1](MAP2K1)|2|[@louissaintPediatrictypeNodalFollicular2016a; @shinBRAFV600EMAP2K12015]|
249
-|[MAP4K4](MAP4K4)|2|[@reddyGeneticFunctionalDrivers2017]|
250
-|[MARK1](MARK1)|2|[@reddyGeneticFunctionalDrivers2017]|
251
-|[MCL1](MCL1)|2|[@paneaWholeGenomeLandscape2019; @dunsCharacterizationDLBCLPMBL2021b; @reddyGeneticFunctionalDrivers2017]|
252
-|[MECOM](MECOM)|2|[@reddyGeneticFunctionalDrivers2017]|
253
-|[MET](MET)|2|[@reddyGeneticFunctionalDrivers2017]|
254
-|[MIR142](MIR142)|2, aSHM|[@grandeGenomewideDiscoverySomatic2019; @kwanhianMicroRNA142Mutated202012b]|
255
-|[MIR155HG](MIR155HG)|2, aSHM||
256
-|[MPDZ](MPDZ)|2|[@morinMutationalStructuralAnalysis2013; @reichelFlowSortingExome2015a]|
257
-|[MSH2](MSH2)|2|[@reddyGeneticFunctionalDrivers2017]|
258
-|[MSH6](MSH6)|2|[@reddyGeneticFunctionalDrivers2017]|
259
-|[MYB](MYB)|2|[@reddyGeneticFunctionalDrivers2017; @deschGenotypingCirculatingTumor2020]|
260
-|[MYBPC2](MYBPC2)|2|[@schmitzGeneticsPathogenesisDiffuse2018a]|
261
-|[MYO1E](MYO1E)|2, aSHM||
262
-|[MYOM2](MYOM2)|2|[@pasqualucciAnalysisCodingGenome2011]|
263
-|[N2RF2](N2RF2)|2|[@hubschmannMutationalMechanismsShaping2021b]|
264
-|[NANOG](NANOG)|2|[@chapuyMolecularSubtypesDiffuse2018b]|
265
-|[NAV1](NAV1)|2|[@chapuyMolecularSubtypesDiffuse2018b]|
266
-|[NCOA3](NCOA3)|2, aSHM||
267
-|[NCOR1](NCOR1)|2|[@reddyGeneticFunctionalDrivers2017]|
268
-|[NCOR2](NCOR2)|2|[@schmitzBurkittLymphomaPathogenesis2012; @spinaGeneticsNodalMarginal2016b; @sarkozyMutationalLandscapeGray2021a]|
269
-|[NEAT1](NEAT1)|2, aSHM|[@arthurGenomewideDiscoverySomatic2018]|
270
-|[NF1](NF1)|2|[@reddyGeneticFunctionalDrivers2017]|
271
-|[NFKB1](NFKB1)|2||
272
-|[NFKB2](NFKB2)|2|[@mottokIntegrativeGenomicAnalysis2019b; @reddyGeneticFunctionalDrivers2017]|
273
-|[NLRC5](NLRC5)|2||
274
-|[NLRP5](NLRP5)|2|[@morinMutationalStructuralAnalysis2013]|
275
-|[NLRP8](NLRP8)|2|[@chapuyMolecularSubtypesDiffuse2018b]|
276
-|[ODZ3](ODZ3)|2|[@morinMutationalStructuralAnalysis2013]|
277
-|[P2RX5](P2RX5)|2, aSHM|[@morinMutationalStructuralAnalysis2013]|
278
-|[PAPOLG](PAPOLG)|2|[@schmitzGeneticsPathogenesisDiffuse2018a]|
279
-|[PASK](PASK)|2|[@morinMutationalStructuralAnalysis2013]|
280
-|[PAX5](PAX5)|2, aSHM|[@pasqualucciHypermutationMultipleProtooncogenes2001a]|
281
-|[PCBP1](PCBP1)|2|[@schmitzBurkittLymphomaPathogenesis2012]|
282
-|[PCDHB11](PCDHB11)|2|[@morinMutationalStructuralAnalysis2013]|
283
-|[PCLO](PCLO)|2|[@lohrDiscoveryPrioritizationSomatic2012a]|
284
-|[PDE4DIP](PDE4DIP)|2|[@chapuyMolecularSubtypesDiffuse2018b]|
285
-|[PDS5B](PDS5B)|2|[@hubschmannMutationalMechanismsShaping2021b; @morinMutationalStructuralAnalysis2013]|
286
-|[PHF6](PHF6)|2|[@reddyGeneticFunctionalDrivers2017; @thomasGeneticSubgroupsInform2023]|
287
-|[PIK3CD](PIK3CD)|2|[@reddyGeneticFunctionalDrivers2017]|
288
-|[PIK3R1](PIK3R1)|2|[@zhangGeneticHeterogeneityDiffuse2013; @paneaWholeGenomeLandscape2019]|
289
-|[PKD1](PKD1)|2|[@morinMutationalStructuralAnalysis2013]|
290
-|[PNPO](PNPO)|2|[@hubschmannMutationalMechanismsShaping2021b]|
291
-|[POGZ](POGZ)|2|[@morinMutationalStructuralAnalysis2013]|
292
-|[PPP1R9B](PPP1R9B)|2||
293
-|[PRKCB](PRKCB)|2|[@morinMutationalStructuralAnalysis2013]|
294
-|[PRKDC](PRKDC)|2|[@schmitzGeneticsPathogenesisDiffuse2018a; @hubschmannMutationalMechanismsShaping2021b]|
295
-|[PRPS1](PRPS1)|2|[@chapuyMolecularSubtypesDiffuse2018b]|
296
-|[PTMA](PTMA)|2, aSHM||
297
-|[PTPN1](PTPN1)|2, aSHM|[@gunawardanaRecurrentSomaticMutations2014c]|
298
-|[PTPN23](PTPN23)|2|[@morinMutationalStructuralAnalysis2013]|
299
-|[PTPN6](PTPN6)|2|[@reddyGeneticFunctionalDrivers2017]|
300
-|[PTPRK](PTPRK)|2|[@reddyGeneticFunctionalDrivers2017]|
301
-|[RAC2](RAC2)|2|[@paneaWholeGenomeLandscape2019; @hubschmannMutationalMechanismsShaping2021b]|
302
-|[RAD9A](RAD9A)|2|[@chapuyMolecularSubtypesDiffuse2018b]|
303
-|[RARA](RARA)|2|[@reddyGeneticFunctionalDrivers2017]|
304
-|[RCC](RCC)|2, aSHM||
305
-|[RFTN1](RFTN1)|2, aSHM|[@dunsCharacterizationDLBCLPMBL2021b; @arthurGenomewideDiscoverySomatic2018]|
306
-|[RFXAP](RFXAP)|2||
307
-|[RHEX](RHEX)|2, aSHM||
308
-|[RHOH](RHOH)|2, aSHM|[@pasqualucciHypermutationMultipleProtooncogenes2001a]|
309
-|[RUBCNL](RUBCNL)|2, aSHM||
310
-|[RUNX1](RUNX1)|2|[@reddyGeneticFunctionalDrivers2017]|
311
-|[SAMD9L](SAMD9L)|2|[@morinMutationalStructuralAnalysis2013]|
312
-|[SARM1](SARM1)|2|[@morinMutationalStructuralAnalysis2013]|
313
-|[SEL1L3](SEL1L3)|2, aSHM||
314
-|[SEPTIN9](SEPTIN9)|2, aSHM||
315
-|[SERPINA9](SERPINA9)|2, aSHM|[@arthurGenomewideDiscoverySomatic2018]|
316
-|[SETD2](SETD2)|2|[@zhangGeneticHeterogeneityDiffuse2013]|
317
-|[SETD5](SETD5)|2|[@reddyGeneticFunctionalDrivers2017; @tiacciPervasiveMutationsJAKSTAT2018b]|
318
-|[SIAH2](SIAH2)|2|[@hubschmannMutationalMechanismsShaping2021b; @reichelFlowSortingExome2015a]|
319
-|[SLC34A2](SLC34A2)|2|[@hubschmannMutationalMechanismsShaping2021b]|
320
-|[SMEK1](SMEK1)|2|[@chapuyMolecularSubtypesDiffuse2018b]|
321
-|[SRRM2](SRRM2)|2|[@morinMutationalStructuralAnalysis2013; @russler-germainMutationsAssociatedProgression2023b]|
322
-|[ST6GAL1](ST6GAL1)|2, aSHM|[@arthurGenomewideDiscoverySomatic2018]|
323
-|[STAT5B](STAT5B)|2|[@zhangGeneticHeterogeneityDiffuse2013; @tiacciPervasiveMutationsJAKSTAT2018b]|
324
-|[SYK](SYK)|2|[@reddyGeneticFunctionalDrivers2017]|
325
-|[SYPL1](SYPL1)|2|[@morinMutationalStructuralAnalysis2013]|
326
-|[TAP1](TAP1)|2|[@schmitzGeneticsPathogenesisDiffuse2018a]|
327
-|[TBC1D4](TBC1D4)|2, aSHM|[@arthurGenomewideDiscoverySomatic2018]|
328
-|[TCL1A](TCL1A)|2, aSHM|[@grandeGenomewideDiscoverySomatic2019]|
329
-|[TGFBR2](TGFBR2)|2|[@reddyGeneticFunctionalDrivers2017]|
330
-|[TIPARP](TIPARP)|2|[@reddyGeneticFunctionalDrivers2017]|
331
-|[TLR2](TLR2)|2|[@beaLandscapeSomaticMutations2013; @chapuyMolecularSubtypesDiffuse2018b]|
332
-|[TRAF3](TRAF3)|2|[@pasqualucciAnalysisCodingGenome2011; @rossiAlterationBIRC3Multiple2011a; @ottoGeneticLesionsTRAF32012a]|
333
-|[TRAF6](TRAF6)|2|[@hubschmannMutationalMechanismsShaping2021b]|
334
-|[TRIP12](TRIP12)|2||
335
-|[UBE2J1](UBE2J1)|2, aSHM||
336
-|[UBR5](UBR5)|2|[@pararajalingamCodingNoncodingDrivers2020; @zhangGeneticHeterogeneityDiffuse2013]|
337
-|[UNC5B](UNC5B)|2|[@hubschmannMutationalMechanismsShaping2021b]|
338
-|[UNC5D](UNC5D)|2||
339
-|[WAC](WAC)|2|[@reddyGeneticFunctionalDrivers2017; @rossiCodingGenomeSplenic2012c]|
340
-|[WDFY3](WDFY3)|2|[@morinMutationalStructuralAnalysis2013]|
341
-|[WNK1](WNK1)|2|[@thomasGeneticSubgroupsInform2023; @jalladesExomeSequencingIdentifies2017; @hubschmannMutationalMechanismsShaping2021b]|
342
-|[XBP1](XBP1)|2, aSHM||
343
-|[YY1](YY1)|2|[@reddyGeneticFunctionalDrivers2017]|
344
-|[ZBTB7A](ZBTB7A)|2|[@reddyGeneticFunctionalDrivers2017; @burkhardtClinicalRelevanceMolecular2022b]|
345
-|[ZCCHC7](ZCCHC7)|2, aSHM|[@arthurGenomewideDiscoverySomatic2018]|
346
-|[ZEB2](ZEB2)|2|[@zhangGeneticHeterogeneityDiffuse2013]|
347
-|[ZFAT](ZFAT)|2|[@reddyGeneticFunctionalDrivers2017]|
348
-|[ZFX](ZFX)|2|[@reddyGeneticFunctionalDrivers2017]|
349
-|[ZNF217](ZNF217)|2|[@reichelFlowSortingExome2015a; @hubschmannMutationalMechanismsShaping2021b]|
350
-|[ZNF423](ZNF423)|2|[@chapuyMolecularSubtypesDiffuse2018b]|
151
+|Gene|Tier| First DLBCL evidence | Other entities |
152
+|:-:|:-:|:-|:-|
153
+|[ABI3BP](ABI3BP)|2|[@morinMutationalStructuralAnalysis2013]||
154
+|[ADAMTS1](ADAMTS1)|2|[@hubschmannMutationalMechanismsShaping2021b]||
155
+|[AICDA](AICDA)|2, aSHM|[@arthurGenomewideDiscoverySomatic2018]||
156
+|[ANKRD12](ANKRD12)|2|[@hubschmannMutationalMechanismsShaping2021b]||
157
+|[ANKRD17](ANKRD17)|2|[@reddyGeneticFunctionalDrivers2017]||
158
+|[ARID1B](ARID1B)|2|[@reddyGeneticFunctionalDrivers2017]||
159
+|[ARID5B](ARID5B)|2|[@reddyGeneticFunctionalDrivers2017]|[@gomezUltraDeepSequencingReveals2023]|
160
+|[ATR](ATR)|2|[@reddyGeneticFunctionalDrivers2017]||
161
+|[BCL11A](BCL11A)|2, aSHM|||
162
+|[BCOR](BCOR)|2||[@nadeuGenomicEpigenomicInsights2020b; @jalladesExomeSequencingIdentifies2017]|
163
+|[BCR](BCR)|2, aSHM|||
164
+|[BIRC3](BIRC3)|2, aSHM|[@arthurGenomewideDiscoverySomatic2018]|[@beaLandscapeSomaticMutations2013; @rossiAlterationBIRC3Multiple2011a; @dunsCharacterizationDLBCLPMBL2021b]|
165
+|[BLK](BLK)|2, aSHM|||
166
+|[BRINP3](BRINP3)|2|[@reddyGeneticFunctionalDrivers2017]||
167
+|[BTBD3](BTBD3)|2|[@reddyGeneticFunctionalDrivers2017]||
168
+|[CADPS2](CADPS2)|2|[@hubschmannMutationalMechanismsShaping2021b]||
169
+|[CASP8](CASP8)|2|[@reddyGeneticFunctionalDrivers2017]||
170
+|[CBLB](CBLB)|2|[@reddyGeneticFunctionalDrivers2017]||
171
+|[CCL4](CCL4)|2|[@chapuyMolecularSubtypesDiffuse2018b]||
172
+|[CD22](CD22)|2|[@reddyGeneticFunctionalDrivers2017]||
173
+|[CD274](CD274)|2|[@morinFrequentMutationHistonemodifying2011]||
174
+|[CD36](CD36)|2|[@pasqualucciAnalysisCodingGenome2011]||
175
+|[CD44](CD44)|2, aSHM|[@arthurGenomewideDiscoverySomatic2018]||
176
+|[CD74](CD74)|2, aSHM|[@arthurGenomewideDiscoverySomatic2018]||
177
+|[CDC73](CDC73)|2|[@reddyGeneticFunctionalDrivers2017]|[@loveGeneticLandscapeMutations2012]|
178
+|[CDH9](CDH9)|2|[@morinMutationalStructuralAnalysis2013]||
179
+|[CHD1](CHD1)|2|[@reddyGeneticFunctionalDrivers2017]||
180
+|[CHD8](CHD8)|2|[@reddyGeneticFunctionalDrivers2017]|[@grandeGenomewideDiscoverySomatic2019]|
181
+|[CHST2](CHST2)|2|[@reddyGeneticFunctionalDrivers2017]||
182
+|[CNOT2](CNOT2)|2|[@hubschmannMutationalMechanismsShaping2021b]||
183
+|[CNTNAP5](CNTNAP5)|2|[@morinMutationalStructuralAnalysis2013]||
184
+|[COQ7](COQ7)|2|[@chapuyMolecularSubtypesDiffuse2018b]||
185
+|[CRIP1](CRIP1)|2|[@chapuyMolecularSubtypesDiffuse2018b]||
186
+|[DAZAP1](DAZAP1)|2|[@pararajalingamCodingNoncodingDrivers2020]||
187
+|[DCAF6](DCAF6)|2|[@reddyGeneticFunctionalDrivers2017]||
188
+|[DDX10](DDX10)|2|[@reddyGeneticFunctionalDrivers2017]||
189
+|[DHX16](DHX16)|2|[@hubschmannMutationalMechanismsShaping2021b]||
190
+|[DICER1](DICER1)|2|[@reddyGeneticFunctionalDrivers2017]||
191
+|[DNAH5](DNAH5)|2|[@morinMutationalStructuralAnalysis2013]|[@jalladesExomeSequencingIdentifies2017]|
192
+|[DNM2](DNM2)|2|[@hubschmannMutationalMechanismsShaping2021b]||
193
+|[DNMT3A](DNMT3A)|2|[@reddyGeneticFunctionalDrivers2017]||
194
+|[DOCK1](DOCK1)|2|[@chapuyMolecularSubtypesDiffuse2018b]||
195
+|[DSG4](DSG4)|2|[@morinMutationalStructuralAnalysis2013]||
196
+|[EIF2AK3](EIF2AK3)|2, aSHM|||
197
+|[EZR](EZR)|2, aSHM||[@deschGenotypingCirculatingTumor2020]|
198
+|[FAM102A](FAM102A)|2, aSHM|||
199
+|[FAM38B](FAM38B)|2|[@morinMutationalStructuralAnalysis2013]||
200
+|[FANK1](FANK1)|2, aSHM|||
201
+|[FAT4](FAT4)|2|[@morinMutationalStructuralAnalysis2013]|[@parryWholeExomeSequencing2013; @zhangGenomicLandscapeMantle2014]|
202
+|[FCRL3](FCRL3)|2, aSHM|||
203
+|[FNBP1](FNBP1)|2, aSHM|||
204
+|[FNDC1](FNDC1)|2|[@morinMutationalStructuralAnalysis2013]||
205
+|[FOXC1](FOXC1)|2|[@schmitzGeneticsPathogenesisDiffuse2018a]||
206
+|[FOXP1](FOXP1)|2, aSHM|[@reddyGeneticFunctionalDrivers2017]||
207
+|[FUBP1](FUBP1)|2|[@reddyGeneticFunctionalDrivers2017]||
208
+|[FUT5](FUT5)|2|[@chapuyMolecularSubtypesDiffuse2018b]||
209
+|[GABRA2](GABRA2)|2|[@chapuyMolecularSubtypesDiffuse2018b]||
210
+|[GAK](GAK)|2|[@hubschmannMutationalMechanismsShaping2021b]||
211
+|[GNAS](GNAS)|2|[@reddyGeneticFunctionalDrivers2017]||
212
+|[GOLGA5](GOLGA5)|2|[@reddyGeneticFunctionalDrivers2017]||
213
+|[GPC5](GPC5)|2|[@schmitzGeneticsPathogenesisDiffuse2018a]||
214
+|[GSG2](GSG2)|2|[@schmitzGeneticsPathogenesisDiffuse2018a]||
215
+|[HDAC7](HDAC7)|2|[@morinMutationalStructuralAnalysis2013]||
216
+|[HIST1H2AG](HIST1H2AG)|2, aSHM|[@morinMutationalStructuralAnalysis2013]|[@rossiCodingGenomeSplenic2012c; @paneaWholeGenomeLandscape2019; @krysiakRecurrentSomaticMutations2017b]|
217
+|[HLA-DMA](HLA-DMA)|2|||
218
+|[HLA-DQA1](HLA-DQA1)|2|[@hubschmannMutationalMechanismsShaping2021b]||
219
+|[HNF1B](HNF1B)|2|[@pasqualucciAnalysisCodingGenome2011]||
220
+|[HNRNPD](HNRNPD)|2|||
221
+|[HNRNPH1](HNRNPH1)|2, noncoding|[@pararajalingamCodingNoncodingDrivers2020]||
222
+|[HRAS](HRAS)|2|[@reddyGeneticFunctionalDrivers2017]|[@jalladesExomeSequencingIdentifies2017]|
223
+|[ID3](ID3)|2|[@schmitzBurkittLymphomaPathogenesis2012]|[@spinaGeneticsNodalMarginal2016b; @richterRecurrentMutationID32012a]|
224
+|[IER2](IER2)|2|[@morinMutationalStructuralAnalysis2013]||
225
+|[IFNGR1](IFNGR1)|2|[@morinMutationalStructuralAnalysis2013]||
226
+|[IGLL5](IGLL5)|2, aSHM||[@russler-germainMutationsAssociatedProgression2023b; @deschGenotypingCirculatingTumor2020; @paneaWholeGenomeLandscape2019]|
227
+|[IKBKB](IKBKB)|2|[@reddyGeneticFunctionalDrivers2017]|[@rossiAlterationBIRC3Multiple2011a; @wienandGenomicAnalysesFlowsorted2019b]|
228
+|[IKBKE](IKBKE)|2|[@hubschmannMutationalMechanismsShaping2021b]||
229
+|[IL16](IL16)|2|||
230
+|[IL6](IL6)|2|[@chapuyMolecularSubtypesDiffuse2018b]||
231
+|[INO80](INO80)|2|[@zhangGeneticHeterogeneityDiffuse2013]||
232
+|[IRAG2](IRAG2)|2, aSHM|||
233
+|[IRF1](IRF1)|2, aSHM|[@hubschmannMutationalMechanismsShaping2021b]||
234
+|[JAK1](JAK1)|2|[@zhangGeneticHeterogeneityDiffuse2013]|[@mottokIntegrativeGenomicAnalysis2019b]|
235
+|[JAK3](JAK3)|2|[@zhangGeneticHeterogeneityDiffuse2013]||
236
+|[JUNB](JUNB)|2|[@reddyGeneticFunctionalDrivers2017]|[@mottokIntegrativeGenomicAnalysis2019b]|
237
+|[KCMF1](KCMF1)|2|[@reddyGeneticFunctionalDrivers2017]||
238
+|[KLHL21](KLHL21)|2|[@schmitzGeneticsPathogenesisDiffuse2018a]||
239
+|[LAMA5](LAMA5)|2|[@schmitzGeneticsPathogenesisDiffuse2018a]||
240
+|[LAPTM5](LAPTM5)|2, aSHM||[@hubschmannMutationalMechanismsShaping2021b]|
241
+|[LIN54](LIN54)|2|[@reddyGeneticFunctionalDrivers2017]||
242
+|[LPP](LPP)|2, aSHM|[@arthurGenomewideDiscoverySomatic2018]||
243
+|[LRP12](LRP12)|2|[@hubschmannMutationalMechanismsShaping2021b]||
244
+|[LRRN3](LRRN3)|2|[@morinMutationalStructuralAnalysis2013]|[@sarkozyMutationalLandscapeGray2021a]|
245
+|[LYN](LYN)|2|[@chapuyMolecularSubtypesDiffuse2018b]||
246
+|[MAGT1](MAGT1)|2|[@reddyGeneticFunctionalDrivers2017]||
247
+|[MALAT1](MALAT1)|2, aSHM|[@arthurGenomewideDiscoverySomatic2018]||
248
+|[MAP2K1](MAP2K1)|2|[@shinBRAFV600EMAP2K12015]|[@louissaintPediatrictypeNodalFollicular2016a]|
249
+|[MAP4K4](MAP4K4)|2|[@reddyGeneticFunctionalDrivers2017]||
250
+|[MARK1](MARK1)|2|[@reddyGeneticFunctionalDrivers2017]||
251
+|[MCL1](MCL1)|2|[@reddyGeneticFunctionalDrivers2017]|[@paneaWholeGenomeLandscape2019; @dunsCharacterizationDLBCLPMBL2021b]|
252
+|[MECOM](MECOM)|2|[@reddyGeneticFunctionalDrivers2017]||
253
+|[MET](MET)|2|[@reddyGeneticFunctionalDrivers2017]||
254
+|[MIR142](MIR142)|2, aSHM|[@kwanhianMicroRNA142Mutated202012b]|[@grandeGenomewideDiscoverySomatic2019]|
255
+|[MIR155HG](MIR155HG)|2, aSHM|||
256
+|[MPDZ](MPDZ)|2|[@morinMutationalStructuralAnalysis2013]|[@reichelFlowSortingExome2015a]|
257
+|[MSH2](MSH2)|2|[@reddyGeneticFunctionalDrivers2017]||
258
+|[MSH6](MSH6)|2|[@reddyGeneticFunctionalDrivers2017]||
259
+|[MYB](MYB)|2|[@reddyGeneticFunctionalDrivers2017]|[@deschGenotypingCirculatingTumor2020]|
260
+|[MYBPC2](MYBPC2)|2|[@schmitzGeneticsPathogenesisDiffuse2018a]||
261
+|[MYO1E](MYO1E)|2, aSHM|||
262
+|[MYOM2](MYOM2)|2|[@pasqualucciAnalysisCodingGenome2011]||
263
+|[N2RF2](N2RF2)|2|[@hubschmannMutationalMechanismsShaping2021b]||
264
+|[NANOG](NANOG)|2|[@chapuyMolecularSubtypesDiffuse2018b]||
265
+|[NAV1](NAV1)|2|[@chapuyMolecularSubtypesDiffuse2018b]||
266
+|[NCOA3](NCOA3)|2, aSHM|||
267
+|[NCOR1](NCOR1)|2|[@reddyGeneticFunctionalDrivers2017]||
268
+|[NCOR2](NCOR2)|2||[@schmitzBurkittLymphomaPathogenesis2012; @spinaGeneticsNodalMarginal2016b; @sarkozyMutationalLandscapeGray2021a]|
269
+|[NEAT1](NEAT1)|2, aSHM|[@arthurGenomewideDiscoverySomatic2018]||
270
+|[NF1](NF1)|2|[@reddyGeneticFunctionalDrivers2017]||
271
+|[NFKB1](NFKB1)|2|||
272
+|[NFKB2](NFKB2)|2|[@reddyGeneticFunctionalDrivers2017]|[@mottokIntegrativeGenomicAnalysis2019b]|
273
+|[NLRC5](NLRC5)|2|||
274
+|[NLRP5](NLRP5)|2|[@morinMutationalStructuralAnalysis2013]||
275
+|[NLRP8](NLRP8)|2|[@chapuyMolecularSubtypesDiffuse2018b]||
276
+|[ODZ3](ODZ3)|2|[@morinMutationalStructuralAnalysis2013]||
277
+|[P2RX5](P2RX5)|2, aSHM|[@morinMutationalStructuralAnalysis2013]||
278
+|[PAPOLG](PAPOLG)|2|[@schmitzGeneticsPathogenesisDiffuse2018a]||
279
+|[PASK](PASK)|2|[@morinMutationalStructuralAnalysis2013]||
280
+|[PAX5](PAX5)|2, aSHM|[@pasqualucciHypermutationMultipleProtooncogenes2001a]||
281
+|[PCBP1](PCBP1)|2||[@schmitzBurkittLymphomaPathogenesis2012]|
282
+|[PCDHB11](PCDHB11)|2|[@morinMutationalStructuralAnalysis2013]||
283
+|[PCLO](PCLO)|2|[@lohrDiscoveryPrioritizationSomatic2012a]||
284
+|[PDE4DIP](PDE4DIP)|2|[@chapuyMolecularSubtypesDiffuse2018b]||
285
+|[PDS5B](PDS5B)|2|[@morinMutationalStructuralAnalysis2013]|[@hubschmannMutationalMechanismsShaping2021b]|
286
+|[PHF6](PHF6)|2|[@reddyGeneticFunctionalDrivers2017]|[@thomasGeneticSubgroupsInform2023]|
287
+|[PIK3CD](PIK3CD)|2|[@reddyGeneticFunctionalDrivers2017]||
288
+|[PIK3R1](PIK3R1)|2|[@zhangGeneticHeterogeneityDiffuse2013]|[@paneaWholeGenomeLandscape2019]|
289
+|[PKD1](PKD1)|2|[@morinMutationalStructuralAnalysis2013]||
290
+|[PNPO](PNPO)|2|[@hubschmannMutationalMechanismsShaping2021b]||
291
+|[POGZ](POGZ)|2|[@morinMutationalStructuralAnalysis2013]||
292
+|[PPP1R9B](PPP1R9B)|2|||
293
+|[PRKCB](PRKCB)|2|[@morinMutationalStructuralAnalysis2013]||
294
+|[PRKDC](PRKDC)|2|[@schmitzGeneticsPathogenesisDiffuse2018a]|[@hubschmannMutationalMechanismsShaping2021b]|
295
+|[PRPS1](PRPS1)|2|[@chapuyMolecularSubtypesDiffuse2018b]||
296
+|[PTMA](PTMA)|2, aSHM|||
297
+|[PTPN1](PTPN1)|2, aSHM||[@gunawardanaRecurrentSomaticMutations2014c]|
298
+|[PTPN23](PTPN23)|2|[@morinMutationalStructuralAnalysis2013]||
299
+|[PTPN6](PTPN6)|2|[@reddyGeneticFunctionalDrivers2017]||
300
+|[PTPRK](PTPRK)|2|[@reddyGeneticFunctionalDrivers2017]||
301
+|[RAC2](RAC2)|2|[@hubschmannMutationalMechanismsShaping2021b]|[@paneaWholeGenomeLandscape2019]|
302
+|[RAD9A](RAD9A)|2|[@chapuyMolecularSubtypesDiffuse2018b]||
303
+|[RARA](RARA)|2|[@reddyGeneticFunctionalDrivers2017]||
304
+|[RCC](RCC)|2, aSHM|||
305
+|[RFTN1](RFTN1)|2, aSHM|[@arthurGenomewideDiscoverySomatic2018]|[@dunsCharacterizationDLBCLPMBL2021b]|
306
+|[RFXAP](RFXAP)|2|||
307
+|[RHEX](RHEX)|2, aSHM|||
308
+|[RHOH](RHOH)|2, aSHM|[@pasqualucciHypermutationMultipleProtooncogenes2001a]||
309
+|[RUBCNL](RUBCNL)|2, aSHM|||
310
+|[RUNX1](RUNX1)|2|[@reddyGeneticFunctionalDrivers2017]||
311
+|[SAMD9L](SAMD9L)|2|[@morinMutationalStructuralAnalysis2013]||
312
+|[SARM1](SARM1)|2|[@morinMutationalStructuralAnalysis2013]||
313
+|[SEL1L3](SEL1L3)|2, aSHM|||
314
+|[SEPTIN9](SEPTIN9)|2, aSHM|||
315
+|[SERPINA9](SERPINA9)|2, aSHM|[@arthurGenomewideDiscoverySomatic2018]||
316
+|[SETD2](SETD2)|2|[@zhangGeneticHeterogeneityDiffuse2013]||
317
+|[SETD5](SETD5)|2|[@reddyGeneticFunctionalDrivers2017]|[@tiacciPervasiveMutationsJAKSTAT2018b]|
318
+|[SIAH2](SIAH2)|2|[@hubschmannMutationalMechanismsShaping2021b]|[@reichelFlowSortingExome2015a]|
319
+|[SLC34A2](SLC34A2)|2|[@hubschmannMutationalMechanismsShaping2021b]||
320
+|[SMEK1](SMEK1)|2|[@chapuyMolecularSubtypesDiffuse2018b]||
321
+|[SRRM2](SRRM2)|2|[@morinMutationalStructuralAnalysis2013]|[@russler-germainMutationsAssociatedProgression2023b]|
322
+|[ST6GAL1](ST6GAL1)|2, aSHM|[@arthurGenomewideDiscoverySomatic2018]||
323
+|[STAT5B](STAT5B)|2|[@zhangGeneticHeterogeneityDiffuse2013]|[@tiacciPervasiveMutationsJAKSTAT2018b]|
324
+|[SYK](SYK)|2|[@reddyGeneticFunctionalDrivers2017]||
325
+|[SYPL1](SYPL1)|2|[@morinMutationalStructuralAnalysis2013]||
326
+|[TAP1](TAP1)|2|[@schmitzGeneticsPathogenesisDiffuse2018a]||
327
+|[TBC1D4](TBC1D4)|2, aSHM|[@arthurGenomewideDiscoverySomatic2018]||
328
+|[TCL1A](TCL1A)|2, aSHM||[@grandeGenomewideDiscoverySomatic2019]|
329
+|[TGFBR2](TGFBR2)|2|[@reddyGeneticFunctionalDrivers2017]||
330
+|[TIPARP](TIPARP)|2|[@reddyGeneticFunctionalDrivers2017]||
331
+|[TLR2](TLR2)|2|[@chapuyMolecularSubtypesDiffuse2018b]|[@beaLandscapeSomaticMutations2013]|
332
+|[TRAF3](TRAF3)|2|[@pasqualucciAnalysisCodingGenome2011]|[@rossiAlterationBIRC3Multiple2011a; @ottoGeneticLesionsTRAF32012a]|
333
+|[TRAF6](TRAF6)|2|[@hubschmannMutationalMechanismsShaping2021b]||
334
+|[TRIP12](TRIP12)|2|||
335
+|[UBE2J1](UBE2J1)|2, aSHM|||
336
+|[UBR5](UBR5)|2|[@zhangGeneticHeterogeneityDiffuse2013]|[@pararajalingamCodingNoncodingDrivers2020]|
337
+|[UNC5B](UNC5B)|2|[@hubschmannMutationalMechanismsShaping2021b]||
338
+|[UNC5D](UNC5D)|2|||
339
+|[WAC](WAC)|2|[@reddyGeneticFunctionalDrivers2017]|[@rossiCodingGenomeSplenic2012c]|
340
+|[WDFY3](WDFY3)|2|[@morinMutationalStructuralAnalysis2013]||
341
+|[WNK1](WNK1)|2|[@hubschmannMutationalMechanismsShaping2021b]|[@thomasGeneticSubgroupsInform2023; @jalladesExomeSequencingIdentifies2017]|
342
+|[XBP1](XBP1)|2, aSHM|||
343
+|[YY1](YY1)|2|[@reddyGeneticFunctionalDrivers2017]||
344
+|[ZBTB7A](ZBTB7A)|2|[@reddyGeneticFunctionalDrivers2017]|[@burkhardtClinicalRelevanceMolecular2022b]|
345
+|[ZCCHC7](ZCCHC7)|2, aSHM|[@arthurGenomewideDiscoverySomatic2018]||
346
+|[ZEB2](ZEB2)|2|[@zhangGeneticHeterogeneityDiffuse2013]||
347
+|[ZFAT](ZFAT)|2|[@reddyGeneticFunctionalDrivers2017]||
348
+|[ZFX](ZFX)|2|[@reddyGeneticFunctionalDrivers2017]||
349
+|[ZNF217](ZNF217)|2|[@hubschmannMutationalMechanismsShaping2021b]|[@reichelFlowSortingExome2015a]|
350
+|[ZNF423](ZNF423)|2|[@chapuyMolecularSubtypesDiffuse2018b]||
351 351
352 352
353 353
# References
FL_genes.md
... ...
@@ -13,131 +13,131 @@ link-citations: true
13 13
14 14
### *66 total*
15 15
16
-|Gene|Tier| Relevant references|
17
-|:-:|:-:|:-|
18
-|[ACTB](ACTB)|1, aSHM|[@lohrDiscoveryPrioritizationSomatic2012a; @wienandGenomicAnalysesFlowsorted2019b]|
19
-|[ARID1A](ARID1A)|1|[@zhangGeneticHeterogeneityDiffuse2013; @rossiCodingGenomeSplenic2012c; @krysiakRecurrentSomaticMutations2017b; @wienandGenomicAnalysesFlowsorted2019b; @loveGeneticLandscapeMutations2012]|
20
-|[ATP6AP1](ATP6AP1)|1|[@okosunRecurrentMTORC1activatingRRAGC2016a]|
21
-|[ATP6V1B2](ATP6V1B2)|1|[@okosunRecurrentMTORC1activatingRRAGC2016a]|
22
-|[B2M](B2M)|1|[@morinFrequentMutationHistonemodifying2011; @reichelFlowSortingExome2015a; @pararajalingamCodingNoncodingDrivers2020]|
23
-|[BCL2](BCL2)|1, aSHM|[@morinFrequentMutationHistonemodifying2011; @sarkozyMutationalLandscapeGray2021a; @burkhardtClinicalRelevanceMolecular2022b; @tanakaFrequentIncidenceSomatic1992]|
24
-|[BCL6](BCL6)|1, aSHM|[@loveGeneticLandscapeMutations2012; @morinFrequentMutationHistonemodifying2011]|
25
-|[BCL7A](BCL7A)|1, aSHM|[@reichelFlowSortingExome2015a; @grandeGenomewideDiscoverySomatic2019; @arthurGenomewideDiscoverySomatic2018; @krysiakRecurrentSomaticMutations2017b]|
26
-|[BIRC6](BIRC6)|1|[@sarkozyMutationalLandscapeGray2021a; @reddyGeneticFunctionalDrivers2017]|
27
-|[BTG1](BTG1)|1, aSHM|[@burkhardtClinicalRelevanceMolecular2022b; @morinFrequentMutationHistonemodifying2011; @sarkozyMutationalLandscapeGray2021a]|
28
-|[BTG2](BTG2)|1, aSHM|[@loveGeneticLandscapeMutations2012; @morinFrequentMutationHistonemodifying2011]|
29
-|[BTK](BTK)|1|[@albuquerqueEnhancingKnowledgeDiscovery2017a; @krysiakRecurrentSomaticMutations2017b]|
30
-|[CARD11](CARD11)|1|[@yanBCRTLRSignaling2012a; @wuGeneticHeterogeneityPrimary2016; @morinFrequentMutationHistonemodifying2011; @paneaWholeGenomeLandscape2019; @lenzOncogenicCARD11Mutations2008]|
31
-|[CCND3](CCND3)|1|[@deschGenotypingCirculatingTumor2020; @richterRecurrentMutationID32012a; @morinFrequentMutationHistonemodifying2011; @jalladesExomeSequencingIdentifies2017]|
32
-|[CD83](CD83)|1, aSHM|[@morinMutationalStructuralAnalysis2013; @russler-germainMutationsAssociatedProgression2023b; @paneaWholeGenomeLandscape2019; @dunsCharacterizationDLBCLPMBL2021b]|
33
-|[CREBBP](CREBBP)|1|[@loveGeneticLandscapeMutations2012; @pasqualucciInactivatingMutationsAcetyltransferase2011a; @dunsCharacterizationDLBCLPMBL2021b; @parryWholeExomeSequencing2013]|
34
-|[CTSS](CTSS)|1|[@barariaCathepsinAlterationsInduce2020c]|
35
-|[DTX1](DTX1)|1, aSHM|[@rossiCodingGenomeSplenic2012c; @paneaWholeGenomeLandscape2019; @schmitzGeneticsPathogenesisDiffuse2018a; @gomezUltraDeepSequencingReveals2023]|
36
-|[EBF1](EBF1)|1, aSHM|[@reichelFlowSortingExome2015a; @bohleRoleEarlyBcell2013; @thomasGeneticSubgroupsInform2023]|
37
-|[EEF1A1](EEF1A1)|1|[@reichelFlowSortingExome2015a; @hubschmannMutationalMechanismsShaping2021b]|
38
-|[EP300](EP300)|1|[@pasqualucciInactivatingMutationsAcetyltransferase2011a; @rossiCodingGenomeSplenic2012c; @paneaWholeGenomeLandscape2019]|
39
-|[EZH2](EZH2)|1|[@loveGeneticLandscapeMutations2012; @mottokIntegrativeGenomicAnalysis2019b; @morinSomaticMutationsAltering2010a]|
40
-|[FAS](FAS)|1|[@schollMutationsRegionFAS2007; @spinaGeneticsNodalMarginal2016b]|
41
-|[FOXO1](FOXO1)|1|[@dunsCharacterizationDLBCLPMBL2021b; @morinFrequentMutationHistonemodifying2011; @schmitzBurkittLymphomaPathogenesis2012]|
42
-|[GNA13](GNA13)|1|[@morinFrequentMutationHistonemodifying2011; @reichelFlowSortingExome2015a; @loveGeneticLandscapeMutations2012]|
43
-|[GNAI2](GNAI2)|1|[@morinMutationalStructuralAnalysis2013; @grandeGenomewideDiscoverySomatic2019]|
44
-|[HIST1H1B](HIST1H1B)|1, aSHM|[@chapuyMolecularSubtypesDiffuse2018b; @sarkozyMutationalLandscapeGray2021a; @krysiakRecurrentSomaticMutations2017b]|
45
-|[HIST1H1C](HIST1H1C)|1, aSHM|[@morinFrequentMutationHistonemodifying2011; @paneaWholeGenomeLandscape2019]|
46
-|[HIST1H1D](HIST1H1D)|1, aSHM|[@krysiakRecurrentSomaticMutations2017b; @jalladesExomeSequencingIdentifies2017; @morinMutationalStructuralAnalysis2013]|
47
-|[HIST1H1E](HIST1H1E)|1, aSHM|[@krysiakRecurrentSomaticMutations2017b; @reichelFlowSortingExome2015a; @morinMutationalStructuralAnalysis2013; @grandeGenomewideDiscoverySomatic2019]|
48
-|[HIST1H2AC](HIST1H2AC)|1, aSHM|[@morinMutationalStructuralAnalysis2013; @krysiakRecurrentSomaticMutations2017b]|
49
-|[HIST1H2AG](HIST1H2AG)|1, aSHM|[@krysiakRecurrentSomaticMutations2017b; @rossiCodingGenomeSplenic2012c; @paneaWholeGenomeLandscape2019; @morinMutationalStructuralAnalysis2013]|
50
-|[HIST1H2AM](HIST1H2AM)|1, aSHM|[@paneaWholeGenomeLandscape2019; @krysiakRecurrentSomaticMutations2017b]|
51
-|[HIST1H2BC](HIST1H2BC)|1, aSHM|[@mottokIntegrativeGenomicAnalysis2019b; @reddyGeneticFunctionalDrivers2017; @krysiakRecurrentSomaticMutations2017b]|
52
-|[HIST1H2BD](HIST1H2BD)|1, aSHM|[@krysiakRecurrentSomaticMutations2017b]|
53
-|[HIST1H2BG](HIST1H2BG)|1, aSHM|[@krysiakRecurrentSomaticMutations2017b]|
54
-|[HIST1H3B](HIST1H3B)|1, aSHM|[@reichelFlowSortingExome2015a; @zhangGeneticHeterogeneityDiffuse2013]|
55
-|[HIST1H3G](HIST1H3G)|1, aSHM|[@krysiakRecurrentSomaticMutations2017b]|
56
-|[HVCN1](HVCN1)|1|[@krysiakRecurrentSomaticMutations2017b]|
57
-|[IRF4](IRF4)|1, aSHM|[@mottokIntegrativeGenomicAnalysis2019b; @morinFrequentMutationHistonemodifying2011]|
58
-|[IRF8](IRF8)|1, aSHM|[@paneaWholeGenomeLandscape2019; @mottokIntegrativeGenomicAnalysis2019b; @morinFrequentMutationHistonemodifying2011]|
59
-|[ITPKB](ITPKB)|1, aSHM|[@schmitzGeneticsPathogenesisDiffuse2018a; @reichelFlowSortingExome2015a]|
60
-|[KLF2](KLF2)|1, aSHM|[@deschGenotypingCirculatingTumor2020; @pasqualucciAnalysisCodingGenome2011; @jalladesExomeSequencingIdentifies2017]|
61
-|[KLHL6](KLHL6)|1, aSHM|[@ganapathiGeneticLandscapeDural2016; @morinFrequentMutationHistonemodifying2011; @paneaWholeGenomeLandscape2019]|
62
-|[KMT2D](KMT2D)|1|[@morinFrequentMutationHistonemodifying2011; @rossiCodingGenomeSplenic2012c; @deschGenotypingCirculatingTumor2020; @grandeGenomewideDiscoverySomatic2019; @beaLandscapeSomaticMutations2013]|
63
-|[LTB](LTB)|1, aSHM|[@paneaWholeGenomeLandscape2019; @chapuyMolecularSubtypesDiffuse2018b; @deschGenotypingCirculatingTumor2020]|
64
-|[MAP2K1](MAP2K1)|1|[@louissaintPediatrictypeNodalFollicular2016a; @shinBRAFV600EMAP2K12015]|
65
-|[MEF2B](MEF2B)|1, aSHM|[@beaLandscapeSomaticMutations2013; @morinFrequentMutationHistonemodifying2011]|
66
-|[MEF2C](MEF2C)|1, aSHM|[@arthurGenomewideDiscoverySomatic2018]|
67
-|[PCLO](PCLO)|1|[@lohrDiscoveryPrioritizationSomatic2012a]|
68
-|[PIM1](PIM1)|1, aSHM|[@burkhardtClinicalRelevanceMolecular2022b; @pasqualucciHypermutationMultipleProtooncogenes2001a; @dunsCharacterizationDLBCLPMBL2021b]|
69
-|[POU2AF1](POU2AF1)|1|[@krysiakRecurrentSomaticMutations2017b]|
70
-|[POU2F2](POU2F2)|1|[@krysiakRecurrentSomaticMutations2017b; @zhangGeneticHeterogeneityDiffuse2013]|
71
-|[PTPRD](PTPRD)|1|[@spinaGeneticsNodalMarginal2016b]|
72
-|[RRAGC](RRAGC)|1|[@okosunRecurrentMTORC1activatingRRAGC2016a]|
73
-|[S1PR2](S1PR2)|1, aSHM|[@morinFrequentMutationHistonemodifying2011; @muppidiLossSignalingGa132014b]|
74
-|[SGK1](SGK1)|1, aSHM|[@dunsCharacterizationDLBCLPMBL2021b; @morinFrequentMutationHistonemodifying2011]|
75
-|[SMARCA4](SMARCA4)|1|[@richterRecurrentMutationID32012a; @zhangGeneticHeterogeneityDiffuse2013; @krysiakRecurrentSomaticMutations2017b; @nadeuGenomicEpigenomicInsights2020b]|
76
-|[SOCS1](SOCS1)|1, aSHM|[@wenigerMutationsTumorSuppressor2006a; @morinFrequentMutationHistonemodifying2011]|
77
-|[STAT6](STAT6)|1|[@ritzRecurrentMutationsSTAT62009a; @yildizActivatingSTAT6Mutations2015c]|
78
-|[TBL1XR1](TBL1XR1)|1|[@mareschalWholeExomeSequencing2016; @rossiCodingGenomeSplenic2012c]|
79
-|[TMSB4X](TMSB4X)|1, aSHM|[@albuquerqueEnhancingKnowledgeDiscovery2017a]|
80
-|[TNFAIP3](TNFAIP3)|1|[@rossiAlterationBIRC3Multiple2011a; @schmitzTNFAIP3A20Tumor2009a; @compagnoMutationsMultipleGenes2009a]|
81
-|[TNFRSF14](TNFRSF14)|1|[@spinaGeneticsNodalMarginal2016b; @cheungAcquiredTNFRSF14Mutations2010a]|
82
-|[TP53](TP53)|1|[@rossiCodingGenomeSplenic2012c; @morinFrequentMutationHistonemodifying2011; @tiacciPervasiveMutationsJAKSTAT2018b; @wildaInactivationARFMDM2p53Pathway2004; @beaLandscapeSomaticMutations2013]|
83
-|[VMA21](VMA21)|1|[@hubschmannMutationalMechanismsShaping2021b]|
16
+|Gene|Tier| First FL evidence | Other entities |
17
+|:-:|:-:|:-|:-|
18
+|[ACTB](ACTB)|1, aSHM||[@lohrDiscoveryPrioritizationSomatic2012a; @wienandGenomicAnalysesFlowsorted2019b]|
19
+|[ARID1A](ARID1A)|1|[@krysiakRecurrentSomaticMutations2017b]|[@loveGeneticLandscapeMutations2012; @rossiCodingGenomeSplenic2012c; @zhangGeneticHeterogeneityDiffuse2013; @wienandGenomicAnalysesFlowsorted2019b]|
20
+|[ATP6AP1](ATP6AP1)|1|[@okosunRecurrentMTORC1activatingRRAGC2016a]||
21
+|[ATP6V1B2](ATP6V1B2)|1|[@okosunRecurrentMTORC1activatingRRAGC2016a]||
22
+|[B2M](B2M)|1|[@morinFrequentMutationHistonemodifying2011]|[@pararajalingamCodingNoncodingDrivers2020; @reichelFlowSortingExome2015a]|
23
+|[BCL2](BCL2)|1, aSHM|[@morinFrequentMutationHistonemodifying2011]|[@burkhardtClinicalRelevanceMolecular2022b; @sarkozyMutationalLandscapeGray2021a; @tanakaFrequentIncidenceSomatic1992]|
24
+|[BCL6](BCL6)|1, aSHM||[@morinFrequentMutationHistonemodifying2011; @loveGeneticLandscapeMutations2012]|
25
+|[BCL7A](BCL7A)|1, aSHM|[@krysiakRecurrentSomaticMutations2017b]|[@arthurGenomewideDiscoverySomatic2018; @reichelFlowSortingExome2015a; @grandeGenomewideDiscoverySomatic2019]|
26
+|[BIRC6](BIRC6)|1||[@reddyGeneticFunctionalDrivers2017; @sarkozyMutationalLandscapeGray2021a]|
27
+|[BTG1](BTG1)|1, aSHM||[@morinFrequentMutationHistonemodifying2011; @burkhardtClinicalRelevanceMolecular2022b; @sarkozyMutationalLandscapeGray2021a]|
28
+|[BTG2](BTG2)|1, aSHM|[@morinFrequentMutationHistonemodifying2011]|[@loveGeneticLandscapeMutations2012]|
29
+|[BTK](BTK)|1|[@krysiakRecurrentSomaticMutations2017b]|[@albuquerqueEnhancingKnowledgeDiscovery2017a]|
30
+|[CARD11](CARD11)|1|[@morinFrequentMutationHistonemodifying2011]|[@lenzOncogenicCARD11Mutations2008; @wuGeneticHeterogeneityPrimary2016; @paneaWholeGenomeLandscape2019; @yanBCRTLRSignaling2012a]|
31
+|[CCND3](CCND3)|1|[@morinFrequentMutationHistonemodifying2011]|[@richterRecurrentMutationID32012a; @jalladesExomeSequencingIdentifies2017; @deschGenotypingCirculatingTumor2020]|
32
+|[CD83](CD83)|1, aSHM|[@russler-germainMutationsAssociatedProgression2023b]|[@paneaWholeGenomeLandscape2019; @dunsCharacterizationDLBCLPMBL2021b; @morinMutationalStructuralAnalysis2013]|
33
+|[CREBBP](CREBBP)|1|[@pasqualucciInactivatingMutationsAcetyltransferase2011a]|[@parryWholeExomeSequencing2013; @dunsCharacterizationDLBCLPMBL2021b; @loveGeneticLandscapeMutations2012]|
34
+|[CTSS](CTSS)|1|[@barariaCathepsinAlterationsInduce2020c]||
35
+|[DTX1](DTX1)|1, aSHM||[@schmitzGeneticsPathogenesisDiffuse2018a; @rossiCodingGenomeSplenic2012c; @gomezUltraDeepSequencingReveals2023; @paneaWholeGenomeLandscape2019]|
36
+|[EBF1](EBF1)|1, aSHM||[@thomasGeneticSubgroupsInform2023; @reichelFlowSortingExome2015a; @bohleRoleEarlyBcell2013]|
37
+|[EEF1A1](EEF1A1)|1|[@hubschmannMutationalMechanismsShaping2021b]|[@reichelFlowSortingExome2015a]|
38
+|[EP300](EP300)|1|[@pasqualucciInactivatingMutationsAcetyltransferase2011a]|[@rossiCodingGenomeSplenic2012c; @paneaWholeGenomeLandscape2019]|
39
+|[EZH2](EZH2)|1|[@morinSomaticMutationsAltering2010a]|[@mottokIntegrativeGenomicAnalysis2019b; @loveGeneticLandscapeMutations2012]|
40
+|[FAS](FAS)|1||[@spinaGeneticsNodalMarginal2016b; @schollMutationsRegionFAS2007]|
41
+|[FOXO1](FOXO1)|1|[@morinFrequentMutationHistonemodifying2011]|[@schmitzBurkittLymphomaPathogenesis2012; @dunsCharacterizationDLBCLPMBL2021b]|
42
+|[GNA13](GNA13)|1|[@morinFrequentMutationHistonemodifying2011]|[@reichelFlowSortingExome2015a; @loveGeneticLandscapeMutations2012]|
43
+|[GNAI2](GNAI2)|1||[@grandeGenomewideDiscoverySomatic2019; @morinMutationalStructuralAnalysis2013]|
44
+|[HIST1H1B](HIST1H1B)|1, aSHM|[@krysiakRecurrentSomaticMutations2017b]|[@chapuyMolecularSubtypesDiffuse2018b; @sarkozyMutationalLandscapeGray2021a]|
45
+|[HIST1H1C](HIST1H1C)|1, aSHM|[@morinFrequentMutationHistonemodifying2011]|[@paneaWholeGenomeLandscape2019]|
46
+|[HIST1H1D](HIST1H1D)|1, aSHM|[@krysiakRecurrentSomaticMutations2017b]|[@morinMutationalStructuralAnalysis2013; @jalladesExomeSequencingIdentifies2017]|
47
+|[HIST1H1E](HIST1H1E)|1, aSHM|[@krysiakRecurrentSomaticMutations2017b]|[@morinMutationalStructuralAnalysis2013; @reichelFlowSortingExome2015a; @grandeGenomewideDiscoverySomatic2019]|
48
+|[HIST1H2AC](HIST1H2AC)|1, aSHM|[@krysiakRecurrentSomaticMutations2017b]|[@morinMutationalStructuralAnalysis2013]|
49
+|[HIST1H2AG](HIST1H2AG)|1, aSHM|[@krysiakRecurrentSomaticMutations2017b]|[@morinMutationalStructuralAnalysis2013; @rossiCodingGenomeSplenic2012c; @paneaWholeGenomeLandscape2019]|
50
+|[HIST1H2AM](HIST1H2AM)|1, aSHM|[@krysiakRecurrentSomaticMutations2017b]|[@paneaWholeGenomeLandscape2019]|
51
+|[HIST1H2BC](HIST1H2BC)|1, aSHM|[@krysiakRecurrentSomaticMutations2017b]|[@mottokIntegrativeGenomicAnalysis2019b; @reddyGeneticFunctionalDrivers2017]|
52
+|[HIST1H2BD](HIST1H2BD)|1, aSHM|[@krysiakRecurrentSomaticMutations2017b]||
53
+|[HIST1H2BG](HIST1H2BG)|1, aSHM|[@krysiakRecurrentSomaticMutations2017b]||
54
+|[HIST1H3B](HIST1H3B)|1, aSHM||[@zhangGeneticHeterogeneityDiffuse2013; @reichelFlowSortingExome2015a]|
55
+|[HIST1H3G](HIST1H3G)|1, aSHM|[@krysiakRecurrentSomaticMutations2017b]||
56
+|[HVCN1](HVCN1)|1|[@krysiakRecurrentSomaticMutations2017b]||
57
+|[IRF4](IRF4)|1, aSHM||[@mottokIntegrativeGenomicAnalysis2019b; @morinFrequentMutationHistonemodifying2011]|
58
+|[IRF8](IRF8)|1, aSHM|[@morinFrequentMutationHistonemodifying2011]|[@mottokIntegrativeGenomicAnalysis2019b; @paneaWholeGenomeLandscape2019]|
59
+|[ITPKB](ITPKB)|1, aSHM||[@reichelFlowSortingExome2015a; @schmitzGeneticsPathogenesisDiffuse2018a]|
60
+|[KLF2](KLF2)|1, aSHM||[@jalladesExomeSequencingIdentifies2017; @deschGenotypingCirculatingTumor2020; @pasqualucciAnalysisCodingGenome2011]|
61
+|[KLHL6](KLHL6)|1, aSHM|[@morinFrequentMutationHistonemodifying2011]|[@paneaWholeGenomeLandscape2019; @ganapathiGeneticLandscapeDural2016]|
62
+|[KMT2D](KMT2D)|1|[@morinFrequentMutationHistonemodifying2011]|[@grandeGenomewideDiscoverySomatic2019; @beaLandscapeSomaticMutations2013; @deschGenotypingCirculatingTumor2020; @rossiCodingGenomeSplenic2012c]|
63
+|[LTB](LTB)|1, aSHM||[@chapuyMolecularSubtypesDiffuse2018b; @deschGenotypingCirculatingTumor2020; @paneaWholeGenomeLandscape2019]|
64
+|[MAP2K1](MAP2K1)|1|[@louissaintPediatrictypeNodalFollicular2016a]|[@shinBRAFV600EMAP2K12015]|
65
+|[MEF2B](MEF2B)|1, aSHM|[@morinFrequentMutationHistonemodifying2011]|[@beaLandscapeSomaticMutations2013]|
66
+|[MEF2C](MEF2C)|1, aSHM||[@arthurGenomewideDiscoverySomatic2018]|
67
+|[PCLO](PCLO)|1||[@lohrDiscoveryPrioritizationSomatic2012a]|
68
+|[PIM1](PIM1)|1, aSHM||[@dunsCharacterizationDLBCLPMBL2021b; @burkhardtClinicalRelevanceMolecular2022b; @pasqualucciHypermutationMultipleProtooncogenes2001a]|
69
+|[POU2AF1](POU2AF1)|1|[@krysiakRecurrentSomaticMutations2017b]||
70
+|[POU2F2](POU2F2)|1|[@krysiakRecurrentSomaticMutations2017b]|[@zhangGeneticHeterogeneityDiffuse2013]|
71
+|[PTPRD](PTPRD)|1||[@spinaGeneticsNodalMarginal2016b]|
72
+|[RRAGC](RRAGC)|1||[@okosunRecurrentMTORC1activatingRRAGC2016a]|
73
+|[S1PR2](S1PR2)|1, aSHM||[@morinFrequentMutationHistonemodifying2011; @muppidiLossSignalingGa132014b]|
74
+|[SGK1](SGK1)|1, aSHM|[@morinFrequentMutationHistonemodifying2011]|[@dunsCharacterizationDLBCLPMBL2021b]|
75
+|[SMARCA4](SMARCA4)|1|[@krysiakRecurrentSomaticMutations2017b]|[@richterRecurrentMutationID32012a; @zhangGeneticHeterogeneityDiffuse2013; @nadeuGenomicEpigenomicInsights2020b]|
76
+|[SOCS1](SOCS1)|1, aSHM||[@wenigerMutationsTumorSuppressor2006a; @morinFrequentMutationHistonemodifying2011]|
77
+|[STAT6](STAT6)|1|[@yildizActivatingSTAT6Mutations2015c]|[@ritzRecurrentMutationsSTAT62009a]|
78
+|[TBL1XR1](TBL1XR1)|1||[@rossiCodingGenomeSplenic2012c; @mareschalWholeExomeSequencing2016]|
79
+|[TMSB4X](TMSB4X)|1, aSHM||[@albuquerqueEnhancingKnowledgeDiscovery2017a]|
80
+|[TNFAIP3](TNFAIP3)|1||[@rossiAlterationBIRC3Multiple2011a; @compagnoMutationsMultipleGenes2009a; @schmitzTNFAIP3A20Tumor2009a]|
81
+|[TNFRSF14](TNFRSF14)|1|[@cheungAcquiredTNFRSF14Mutations2010a]|[@spinaGeneticsNodalMarginal2016b]|
82
+|[TP53](TP53)|1|[@morinFrequentMutationHistonemodifying2011]|[@wildaInactivationARFMDM2p53Pathway2004; @rossiCodingGenomeSplenic2012c; @beaLandscapeSomaticMutations2013; @tiacciPervasiveMutationsJAKSTAT2018b]|
83
+|[VMA21](VMA21)|1|[@hubschmannMutationalMechanismsShaping2021b]||
84 84
85 85
## Tier 2 FL genes
86 86
87 87
### *50 total*
88 88
89
-|Gene|Tier| Relevant references|
90
-|:-:|:-:|:-|
91
-|[ABL2](ABL2)|2|[@russler-germainMutationsAssociatedProgression2023b]|
92
-|[ACTG1](ACTG1)|2, aSHM|[@hubschmannMutationalMechanismsShaping2021b; @spinaGeneticsNodalMarginal2016b; @deschGenotypingCirculatingTumor2020]|
93
-|[ATP6V1A](ATP6V1A)|2|[@hubschmannMutationalMechanismsShaping2021b]|
94
-|[BCL10](BCL10)|2|[@spinaGeneticsNodalMarginal2016b; @morinFrequentMutationHistonemodifying2011; @russler-germainMutationsAssociatedProgression2023b]|
95
-|[CCDC42BPB](CCDC42BPB)|2|[@hubschmannMutationalMechanismsShaping2021b]|
96
-|[CD70](CD70)|2|[@morinFrequentMutationHistonemodifying2011; @russler-germainMutationsAssociatedProgression2023b]|
97
-|[CD79B](CD79B)|2|[@paneaWholeGenomeLandscape2019; @morinFrequentMutationHistonemodifying2011]|
98
-|[CILP](CILP)|2|[@russler-germainMutationsAssociatedProgression2023b]|
99
-|[CPNE8](CPNE8)|2|[@hubschmannMutationalMechanismsShaping2021b]|
100
-|[CXCR4](CXCR4)|2, aSHM|[@khodabakhshiRecurrentTargetsAberrant2012; @krysiakRecurrentSomaticMutations2017b; @paneaWholeGenomeLandscape2019]|
101
-|[CYP2A6](CYP2A6)|2|[@russler-germainMutationsAssociatedProgression2023b]|
102
-|[DDX3X](DDX3X)|2|[@schmitzGeneticsPathogenesisDiffuse2018a; @schmitzBurkittLymphomaPathogenesis2012; @mottokIntegrativeGenomicAnalysis2019b]|
103
-|[DHX15](DHX15)|2|[@hubschmannMutationalMechanismsShaping2021b]|
104
-|[DUSP2](DUSP2)|2, aSHM|[@morinMutationalStructuralAnalysis2013; @dunsCharacterizationDLBCLPMBL2021b]|
105
-|[EGR1](EGR1)|2|[@krysiakRecurrentSomaticMutations2017b; @rossiCodingGenomeSplenic2012c; @reichelFlowSortingExome2015a]|
106
-|[FZR1](FZR1)|2|[@hubschmannMutationalMechanismsShaping2021b]|
107
-|[GBP7](GBP7)|2|[@russler-germainMutationsAssociatedProgression2023b]|
108
-|[GRM6](GRM6)|2|[@russler-germainMutationsAssociatedProgression2023b]|
109
-|[HIST1H2BM](HIST1H2BM)|2, aSHM|[@krysiakRecurrentSomaticMutations2017b]|
110
-|[HIST1H3I](HIST1H3I)|2, aSHM|[@krysiakRecurrentSomaticMutations2017b; @paneaWholeGenomeLandscape2019]|
111
-|[HLA-B](HLA-B)|2|[@wienandGenomicAnalysesFlowsorted2019b]|
112
-|[HNRNPD](HNRNPD)|2||
113
-|[IGLL5](IGLL5)|2, aSHM|[@deschGenotypingCirculatingTumor2020; @paneaWholeGenomeLandscape2019; @russler-germainMutationsAssociatedProgression2023b]|
114
-|[JUP](JUP)|2|[@hubschmannMutationalMechanismsShaping2021b]|
115
-|[KIR3DL1](KIR3DL1)|2|[@russler-germainMutationsAssociatedProgression2023b]|
116
-|[LAPTM5](LAPTM5)|2|[@hubschmannMutationalMechanismsShaping2021b]|
117
-|[MAGEC1](MAGEC1)|2|[@russler-germainMutationsAssociatedProgression2023b]|
118
-|[MAP7D1](MAP7D1)|2|[@russler-germainMutationsAssociatedProgression2023b]|
119
-|[MGEA5](MGEA5)|2|[@hubschmannMutationalMechanismsShaping2021b]|
120
-|[MKI67](MKI67)|2|[@russler-germainMutationsAssociatedProgression2023b; @schmitzBurkittLymphomaPathogenesis2012]|
121
-|[MYC](MYC)|2, aSHM|[@pasqualucciHypermutationMultipleProtooncogenes2001a; @jalladesExomeSequencingIdentifies2017; @johnstonCmycHypermutationBurkitt1992; @dunsCharacterizationDLBCLPMBL2021b]|
122
-|[MYCBP2](MYCBP2)|2|[@hubschmannMutationalMechanismsShaping2021b]|
123
-|[MYD88](MYD88)|2|[@yanBCRTLRSignaling2012a; @ngoOncogenicallyActiveMYD882011a]|
124
-|[NFKBIA](NFKBIA)|2|[@lakeMutationsNFKBIAEncoding2009; @wienandGenomicAnalysesFlowsorted2019b; @russler-germainMutationsAssociatedProgression2023b]|
125
-|[OR8H2](OR8H2)|2|[@russler-germainMutationsAssociatedProgression2023b]|
126
-|[P2RY8](P2RY8)|2|[@muppidiLossSignalingGa132014b; @lohrDiscoveryPrioritizationSomatic2012a]|
127
-|[PDS5B](PDS5B)|2|[@morinMutationalStructuralAnalysis2013; @hubschmannMutationalMechanismsShaping2021b]|
128
-|[PPP4C](PPP4C)|2|[@hubschmannMutationalMechanismsShaping2021b]|
129
-|[PRKDC](PRKDC)|2|[@schmitzGeneticsPathogenesisDiffuse2018a; @hubschmannMutationalMechanismsShaping2021b]|
130
-|[PZP](PZP)|2|[@russler-germainMutationsAssociatedProgression2023b]|
131
-|[RBM6](RBM6)|2|[@hubschmannMutationalMechanismsShaping2021b]|
132
-|[SESN1](SESN1)|2|[@oricchioGeneticEpigeneticInactivation2017b]|
133
-|[SHROOM3](SHROOM3)|2|[@russler-germainMutationsAssociatedProgression2023b]|
134
-|[SRRM2](SRRM2)|2|[@morinMutationalStructuralAnalysis2013; @russler-germainMutationsAssociatedProgression2023b]|
135
-|[STAB2](STAB2)|2|[@russler-germainMutationsAssociatedProgression2023b]|
136
-|[TMEM30A](TMEM30A)|2|[@morinFrequentMutationHistonemodifying2011]|
137
-|[TPP1](TPP1)|2|[@hubschmannMutationalMechanismsShaping2021b]|
138
-|[XIRP2](XIRP2)|2|[@russler-germainMutationsAssociatedProgression2023b]|
139
-|[ZC3H12A](ZC3H12A)|2|[@arthurGenomewideDiscoverySomatic2018]|
140
-|[ZNF608](ZNF608)|2|[@krysiakRecurrentSomaticMutations2017b; @zhangGeneticHeterogeneityDiffuse2013]|
89
+|Gene|Tier| First FL evidence | Other entities |
90
+|:-:|:-:|:-|:-|
91
+|[ABL2](ABL2)|2|[@russler-germainMutationsAssociatedProgression2023b]||
92
+|[ACTG1](ACTG1)|2, aSHM|[@hubschmannMutationalMechanismsShaping2021b]|[@spinaGeneticsNodalMarginal2016b; @deschGenotypingCirculatingTumor2020]|
93
+|[ATP6V1A](ATP6V1A)|2|[@hubschmannMutationalMechanismsShaping2021b]||
94
+|[BCL10](BCL10)|2|[@russler-germainMutationsAssociatedProgression2023b]|[@morinFrequentMutationHistonemodifying2011; @spinaGeneticsNodalMarginal2016b]|
95
+|[CCDC42BPB](CCDC42BPB)|2|[@hubschmannMutationalMechanismsShaping2021b]||
96
+|[CD70](CD70)|2|[@russler-germainMutationsAssociatedProgression2023b]|[@morinFrequentMutationHistonemodifying2011]|
97
+|[CD79B](CD79B)|2||[@morinFrequentMutationHistonemodifying2011; @paneaWholeGenomeLandscape2019]|
98
+|[CILP](CILP)|2|[@russler-germainMutationsAssociatedProgression2023b]||
99
+|[CPNE8](CPNE8)|2|[@hubschmannMutationalMechanismsShaping2021b]||
100
+|[CXCR4](CXCR4)|2, aSHM|[@krysiakRecurrentSomaticMutations2017b]|[@paneaWholeGenomeLandscape2019; @khodabakhshiRecurrentTargetsAberrant2012]|
101
+|[CYP2A6](CYP2A6)|2|[@russler-germainMutationsAssociatedProgression2023b]||
102
+|[DDX3X](DDX3X)|2||[@schmitzBurkittLymphomaPathogenesis2012; @schmitzGeneticsPathogenesisDiffuse2018a; @mottokIntegrativeGenomicAnalysis2019b]|
103
+|[DHX15](DHX15)|2|[@hubschmannMutationalMechanismsShaping2021b]||
104
+|[DUSP2](DUSP2)|2, aSHM||[@morinMutationalStructuralAnalysis2013; @dunsCharacterizationDLBCLPMBL2021b]|
105
+|[EGR1](EGR1)|2|[@krysiakRecurrentSomaticMutations2017b]|[@reichelFlowSortingExome2015a; @rossiCodingGenomeSplenic2012c]|
106
+|[FZR1](FZR1)|2|[@hubschmannMutationalMechanismsShaping2021b]||
107
+|[GBP7](GBP7)|2|[@russler-germainMutationsAssociatedProgression2023b]||
108
+|[GRM6](GRM6)|2|[@russler-germainMutationsAssociatedProgression2023b]||
109
+|[HIST1H2BM](HIST1H2BM)|2, aSHM|[@krysiakRecurrentSomaticMutations2017b]||
110
+|[HIST1H3I](HIST1H3I)|2, aSHM|[@krysiakRecurrentSomaticMutations2017b]|[@paneaWholeGenomeLandscape2019]|
111
+|[HLA-B](HLA-B)|2||[@wienandGenomicAnalysesFlowsorted2019b]|
112
+|[HNRNPD](HNRNPD)|2|||
113
+|[IGLL5](IGLL5)|2, aSHM|[@russler-germainMutationsAssociatedProgression2023b]|[@deschGenotypingCirculatingTumor2020; @paneaWholeGenomeLandscape2019]|
114
+|[JUP](JUP)|2|[@hubschmannMutationalMechanismsShaping2021b]||
115
+|[KIR3DL1](KIR3DL1)|2|[@russler-germainMutationsAssociatedProgression2023b]||
116
+|[LAPTM5](LAPTM5)|2|[@hubschmannMutationalMechanismsShaping2021b]||
117
+|[MAGEC1](MAGEC1)|2|[@russler-germainMutationsAssociatedProgression2023b]||
118
+|[MAP7D1](MAP7D1)|2|[@russler-germainMutationsAssociatedProgression2023b]||
119
+|[MGEA5](MGEA5)|2|[@hubschmannMutationalMechanismsShaping2021b]||
120
+|[MKI67](MKI67)|2|[@russler-germainMutationsAssociatedProgression2023b]|[@schmitzBurkittLymphomaPathogenesis2012]|
121
+|[MYC](MYC)|2, aSHM||[@johnstonCmycHypermutationBurkitt1992; @jalladesExomeSequencingIdentifies2017; @dunsCharacterizationDLBCLPMBL2021b; @pasqualucciHypermutationMultipleProtooncogenes2001a]|
122
+|[MYCBP2](MYCBP2)|2|[@hubschmannMutationalMechanismsShaping2021b]||
123
+|[MYD88](MYD88)|2||[@ngoOncogenicallyActiveMYD882011a; @yanBCRTLRSignaling2012a]|
124
+|[NFKBIA](NFKBIA)|2|[@russler-germainMutationsAssociatedProgression2023b]|[@wienandGenomicAnalysesFlowsorted2019b; @lakeMutationsNFKBIAEncoding2009]|
125
+|[OR8H2](OR8H2)|2|[@russler-germainMutationsAssociatedProgression2023b]||
126
+|[P2RY8](P2RY8)|2||[@muppidiLossSignalingGa132014b; @lohrDiscoveryPrioritizationSomatic2012a]|
127
+|[PDS5B](PDS5B)|2|[@hubschmannMutationalMechanismsShaping2021b]|[@morinMutationalStructuralAnalysis2013]|
128
+|[PPP4C](PPP4C)|2|[@hubschmannMutationalMechanismsShaping2021b]||
129
+|[PRKDC](PRKDC)|2|[@hubschmannMutationalMechanismsShaping2021b]|[@schmitzGeneticsPathogenesisDiffuse2018a]|
130
+|[PZP](PZP)|2|[@russler-germainMutationsAssociatedProgression2023b]||
131
+|[RBM6](RBM6)|2|[@hubschmannMutationalMechanismsShaping2021b]||
132
+|[SESN1](SESN1)|2|[@oricchioGeneticEpigeneticInactivation2017b]||
133
+|[SHROOM3](SHROOM3)|2|[@russler-germainMutationsAssociatedProgression2023b]||
134
+|[SRRM2](SRRM2)|2|[@russler-germainMutationsAssociatedProgression2023b]|[@morinMutationalStructuralAnalysis2013]|
135
+|[STAB2](STAB2)|2|[@russler-germainMutationsAssociatedProgression2023b]||
136
+|[TMEM30A](TMEM30A)|2|[@morinFrequentMutationHistonemodifying2011]||
137
+|[TPP1](TPP1)|2|[@hubschmannMutationalMechanismsShaping2021b]||
138
+|[XIRP2](XIRP2)|2|[@russler-germainMutationsAssociatedProgression2023b]||
139
+|[ZC3H12A](ZC3H12A)|2||[@arthurGenomewideDiscoverySomatic2018]|
140
+|[ZNF608](ZNF608)|2|[@krysiakRecurrentSomaticMutations2017b]|[@zhangGeneticHeterogeneityDiffuse2013]|
141 141
142 142
143 143
# References
MCL_genes.md
... ...
@@ -13,84 +13,84 @@ link-citations: true
13 13
14 14
### *23 total*
15 15
16
-|Gene|Tier| Relevant references|
17
-|:-:|:-:|:-|
18
-|[ATM](ATM)|1|[@reddyGeneticFunctionalDrivers2017; @braggioGenomicAnalysisMarginal2012; @beaLandscapeSomaticMutations2013]|
19
-|[BIRC3](BIRC3)|1|[@rossiAlterationBIRC3Multiple2011a; @beaLandscapeSomaticMutations2013; @arthurGenomewideDiscoverySomatic2018; @dunsCharacterizationDLBCLPMBL2021b]|
20
-|[CARD11](CARD11)|1|[@yanBCRTLRSignaling2012a; @lenzOncogenicCARD11Mutations2008; @morinFrequentMutationHistonemodifying2011; @wuGeneticHeterogeneityPrimary2016; @paneaWholeGenomeLandscape2019]|
21
-|[CCND1](CCND1)|1, aSHM|[@beaLandscapeSomaticMutations2013]|
22
-|[DAZAP1](DAZAP1)|1|[@pararajalingamCodingNoncodingDrivers2020]|
23
-|[EWSR1](EWSR1)|1|[@pararajalingamCodingNoncodingDrivers2020]|
24
-|[HNRNPH1](HNRNPH1)|1, noncoding|[@pararajalingamCodingNoncodingDrivers2020]|
25
-|[KMT2D](KMT2D)|1|[@rossiCodingGenomeSplenic2012c; @morinFrequentMutationHistonemodifying2011; @beaLandscapeSomaticMutations2013; @grandeGenomewideDiscoverySomatic2019; @deschGenotypingCirculatingTumor2020]|
26
-|[MEF2B](MEF2B)|1|[@beaLandscapeSomaticMutations2013; @morinFrequentMutationHistonemodifying2011]|
27
-|[NFKBIE](NFKBIE)|1|[@pararajalingamCodingNoncodingDrivers2020; @mansouriFrequentNFKBIEDeletions2016; @morinGeneticLandscapesRelapsed2016]|
28
-|[NOTCH1](NOTCH1)|1|[@rossiCodingGenomeSplenic2012c; @loveGeneticLandscapeMutations2012; @beaLandscapeSomaticMutations2013; @pasqualucciAnalysisCodingGenome2011]|
29
-|[NOTCH2](NOTCH2)|1|[@troenNOTCH2MutationsMarginal2008; @paneaWholeGenomeLandscape2019; @rossiCodingGenomeSplenic2012c; @beaLandscapeSomaticMutations2013]|
30
-|[NSD2](NSD2)|1|[@beaLandscapeSomaticMutations2013]|
31
-|[POT1](POT1)|1|[@zhangGenomicLandscapeMantle2014]|
32
-|[RB1](RB1)|1|[@morinMutationalStructuralAnalysis2013; @zhangGenomicLandscapeMantle2014]|
33
-|[S1PR1](S1PR1)|1|[@pararajalingamCodingNoncodingDrivers2020]|
34
-|[SMARCA4](SMARCA4)|1|[@richterRecurrentMutationID32012a; @nadeuGenomicEpigenomicInsights2020b; @zhangGeneticHeterogeneityDiffuse2013; @krysiakRecurrentSomaticMutations2017b]|
35
-|[SP140](SP140)|1|[@beaLandscapeSomaticMutations2013]|
36
-|[SYNE1](SYNE1)|1|[@nadeuGenomicEpigenomicInsights2020b]|
37
-|[TERT](TERT)|1, noncoding|[@nadeuGenomicEpigenomicInsights2020b]|
38
-|[TLR2](TLR2)|1|[@chapuyMolecularSubtypesDiffuse2018b; @beaLandscapeSomaticMutations2013]|
39
-|[TP53](TP53)|1|[@beaLandscapeSomaticMutations2013; @wildaInactivationARFMDM2p53Pathway2004; @tiacciPervasiveMutationsJAKSTAT2018b; @morinFrequentMutationHistonemodifying2011; @rossiCodingGenomeSplenic2012c]|
40
-|[UBR5](UBR5)|1|[@zhangGeneticHeterogeneityDiffuse2013; @pararajalingamCodingNoncodingDrivers2020]|
16
+|Gene|Tier| First MCL evidence | Other entities |
17
+|:-:|:-:|:-|:-|
18
+|[ATM](ATM)|1|[@beaLandscapeSomaticMutations2013]|[@reddyGeneticFunctionalDrivers2017; @braggioGenomicAnalysisMarginal2012]|
19
+|[BIRC3](BIRC3)|1|[@beaLandscapeSomaticMutations2013]|[@arthurGenomewideDiscoverySomatic2018; @rossiAlterationBIRC3Multiple2011a; @dunsCharacterizationDLBCLPMBL2021b]|
20
+|[CARD11](CARD11)|1|[@wuGeneticHeterogeneityPrimary2016]|[@paneaWholeGenomeLandscape2019; @morinFrequentMutationHistonemodifying2011; @lenzOncogenicCARD11Mutations2008; @yanBCRTLRSignaling2012a]|
21
+|[CCND1](CCND1)|1, aSHM|[@beaLandscapeSomaticMutations2013]||
22
+|[DAZAP1](DAZAP1)|1|[@pararajalingamCodingNoncodingDrivers2020]||
23
+|[EWSR1](EWSR1)|1|[@pararajalingamCodingNoncodingDrivers2020]||
24
+|[HNRNPH1](HNRNPH1)|1, noncoding|[@pararajalingamCodingNoncodingDrivers2020]||
25
+|[KMT2D](KMT2D)|1|[@beaLandscapeSomaticMutations2013]|[@rossiCodingGenomeSplenic2012c; @deschGenotypingCirculatingTumor2020; @morinFrequentMutationHistonemodifying2011; @grandeGenomewideDiscoverySomatic2019]|
26
+|[MEF2B](MEF2B)|1|[@beaLandscapeSomaticMutations2013]|[@morinFrequentMutationHistonemodifying2011]|
27
+|[NFKBIE](NFKBIE)|1|[@pararajalingamCodingNoncodingDrivers2020]|[@morinGeneticLandscapesRelapsed2016; @mansouriFrequentNFKBIEDeletions2016]|
28
+|[NOTCH1](NOTCH1)|1|[@beaLandscapeSomaticMutations2013]|[@rossiCodingGenomeSplenic2012c; @pasqualucciAnalysisCodingGenome2011; @loveGeneticLandscapeMutations2012]|
29
+|[NOTCH2](NOTCH2)|1|[@beaLandscapeSomaticMutations2013]|[@rossiCodingGenomeSplenic2012c; @troenNOTCH2MutationsMarginal2008; @paneaWholeGenomeLandscape2019]|
30
+|[NSD2](NSD2)|1|[@beaLandscapeSomaticMutations2013]||
31
+|[POT1](POT1)|1|[@zhangGenomicLandscapeMantle2014]||
32
+|[RB1](RB1)|1|[@zhangGenomicLandscapeMantle2014]|[@morinMutationalStructuralAnalysis2013]|
33
+|[S1PR1](S1PR1)|1|[@pararajalingamCodingNoncodingDrivers2020]||
34
+|[SMARCA4](SMARCA4)|1|[@nadeuGenomicEpigenomicInsights2020b]|[@krysiakRecurrentSomaticMutations2017b; @zhangGeneticHeterogeneityDiffuse2013; @richterRecurrentMutationID32012a]|
35
+|[SP140](SP140)|1|[@beaLandscapeSomaticMutations2013]||
36
+|[SYNE1](SYNE1)|1|[@nadeuGenomicEpigenomicInsights2020b]||
37
+|[TERT](TERT)|1, noncoding|[@nadeuGenomicEpigenomicInsights2020b]||
38
+|[TLR2](TLR2)|1|[@beaLandscapeSomaticMutations2013]|[@chapuyMolecularSubtypesDiffuse2018b]|
39
+|[TP53](TP53)|1|[@beaLandscapeSomaticMutations2013]|[@morinFrequentMutationHistonemodifying2011; @tiacciPervasiveMutationsJAKSTAT2018b; @rossiCodingGenomeSplenic2012c; @wildaInactivationARFMDM2p53Pathway2004]|
40
+|[UBR5](UBR5)|1|[@pararajalingamCodingNoncodingDrivers2020]|[@zhangGeneticHeterogeneityDiffuse2013]|
41 41
42 42
## Tier 2 MCL genes
43 43
44 44
### *46 total*
45 45
46
-|Gene|Tier| Relevant references|
47
-|:-:|:-:|:-|
48
-|[ABCA3](ABCA3)|2|[@beaLandscapeSomaticMutations2013]|
49
-|[ABCC9](ABCC9)|2|[@beaLandscapeSomaticMutations2013]|
50
-|[ANK2](ANK2)|2|[@zhangGenomicLandscapeMantle2014]|
51
-|[ARID1B](ARID1B)|2|[@reddyGeneticFunctionalDrivers2017]|
52
-|[ATP11C](ATP11C)|2|[@zhangGenomicLandscapeMantle2014]|
53
-|[B2M](B2M)|2|[@pararajalingamCodingNoncodingDrivers2020; @reichelFlowSortingExome2015a; @morinFrequentMutationHistonemodifying2011]|
54
-|[BCOR](BCOR)|2|[@jalladesExomeSequencingIdentifies2017; @nadeuGenomicEpigenomicInsights2020b]|
55
-|[CDH8](CDH8)|2|[@zhangGenomicLandscapeMantle2014]|
56
-|[CHMP4C](CHMP4C)|2|[@beaLandscapeSomaticMutations2013]|
57
-|[COL11A1](COL11A1)|2|[@zhangGenomicLandscapeMantle2014]|
58
-|[COL16A1](COL16A1)|2|[@zhangGenomicLandscapeMantle2014]|
59
-|[CRYBG3](CRYBG3)|2|[@beaLandscapeSomaticMutations2013]|
60
-|[CTNNA2](CTNNA2)|2|[@zhangGenomicLandscapeMantle2014]|
61
-|[DCP1B](DCP1B)|2|[@beaLandscapeSomaticMutations2013]|
62
-|[DHDH](DHDH)|2|[@zhangGenomicLandscapeMantle2014]|
63
-|[DLC1](DLC1)|2|[@zhangGenomicLandscapeMantle2014]|
64
-|[DLGAP2](DLGAP2)|2|[@beaLandscapeSomaticMutations2013]|
65
-|[DNAJC6](DNAJC6)|2|[@beaLandscapeSomaticMutations2013]|
66
-|[EIF2AK4](EIF2AK4)|2|[@zhangGenomicLandscapeMantle2014]|
67
-|[ESX1](ESX1)|2|[@zhangGenomicLandscapeMantle2014]|
68
-|[FAT4](FAT4)|2|[@parryWholeExomeSequencing2013; @zhangGenomicLandscapeMantle2014; @morinMutationalStructuralAnalysis2013]|
69
-|[GRIN2A](GRIN2A)|2|[@zhangGenomicLandscapeMantle2014]|
70
-|[HEPH](HEPH)|2|[@zhangGenomicLandscapeMantle2014]|
71
-|[KCNC2](KCNC2)|2|[@beaLandscapeSomaticMutations2013]|
72
-|[KIAA1671](KIAA1671)|2|[@beaLandscapeSomaticMutations2013]|
73
-|[KMT2C](KMT2C)|2|[@sarkozyMutationalLandscapeGray2021a; @zhangGeneticHeterogeneityDiffuse2013; @zhangGenomicLandscapeMantle2014; @zhouSporadicEndemicBurkitt2019]|
74
-|[LUZP4](LUZP4)|2|[@beaLandscapeSomaticMutations2013]|
75
-|[MRGPRF](MRGPRF)|2|[@zhangGenomicLandscapeMantle2014]|
76
-|[NIN](NIN)|2|[@zhangGenomicLandscapeMantle2014]|
77
-|[OGDHL](OGDHL)|2|[@zhangGenomicLandscapeMantle2014]|
78
-|[PCDHB2](PCDHB2)|2|[@zhangGenomicLandscapeMantle2014]|
79
-|[PCSK2](PCSK2)|2|[@beaLandscapeSomaticMutations2013]|
80
-|[PDLIM3](PDLIM3)|2|[@beaLandscapeSomaticMutations2013]|
81
-|[PLXNB3](PLXNB3)|2|[@zhangGenomicLandscapeMantle2014; @spinaGeneticsNodalMarginal2016b]|
82
-|[RGS4](RGS4)|2|[@beaLandscapeSomaticMutations2013]|
83
-|[ROBO2](ROBO2)|2|[@zhangGenomicLandscapeMantle2014]|
84
-|[SALL3](SALL3)|2|[@loveGeneticLandscapeMutations2012; @zhangGenomicLandscapeMantle2014]|
85
-|[SI](SI)|2|[@zhangGenomicLandscapeMantle2014]|
86
-|[SLC17A6](SLC17A6)|2|[@beaLandscapeSomaticMutations2013]|
87
-|[SMARCB1](SMARCB1)|2|[@nadeuGenomicEpigenomicInsights2020b]|
88
-|[SMC1A](SMC1A)|2|[@zhangGenomicLandscapeMantle2014]|
89
-|[TBC1D26](TBC1D26)|2|[@zhangGenomicLandscapeMantle2014]|
90
-|[TNRC6B](TNRC6B)|2|[@beaLandscapeSomaticMutations2013]|
91
-|[TRPM6](TRPM6)|2|[@beaLandscapeSomaticMutations2013]|
92
-|[ZNF117](ZNF117)|2|[@zhangGenomicLandscapeMantle2014]|
93
-|[ZNF296](ZNF296)|2|[@zhangGenomicLandscapeMantle2014]|
46
+|Gene|Tier| First MCL evidence | Other entities |
47
+|:-:|:-:|:-|:-|
48
+|[ABCA3](ABCA3)|2|[@beaLandscapeSomaticMutations2013]||
49
+|[ABCC9](ABCC9)|2|[@beaLandscapeSomaticMutations2013]||
50
+|[ANK2](ANK2)|2|[@zhangGenomicLandscapeMantle2014]||
51
+|[ARID1B](ARID1B)|2||[@reddyGeneticFunctionalDrivers2017]|
52
+|[ATP11C](ATP11C)|2|[@zhangGenomicLandscapeMantle2014]||
53
+|[B2M](B2M)|2|[@pararajalingamCodingNoncodingDrivers2020]|[@morinFrequentMutationHistonemodifying2011; @reichelFlowSortingExome2015a]|
54
+|[BCOR](BCOR)|2|[@nadeuGenomicEpigenomicInsights2020b]|[@jalladesExomeSequencingIdentifies2017]|
55
+|[CDH8](CDH8)|2|[@zhangGenomicLandscapeMantle2014]||
56
+|[CHMP4C](CHMP4C)|2|[@beaLandscapeSomaticMutations2013]||
57
+|[COL11A1](COL11A1)|2|[@zhangGenomicLandscapeMantle2014]||
58
+|[COL16A1](COL16A1)|2|[@zhangGenomicLandscapeMantle2014]||
59
+|[CRYBG3](CRYBG3)|2|[@beaLandscapeSomaticMutations2013]||
60
+|[CTNNA2](CTNNA2)|2|[@zhangGenomicLandscapeMantle2014]||
61
+|[DCP1B](DCP1B)|2|[@beaLandscapeSomaticMutations2013]||
62
+|[DHDH](DHDH)|2|[@zhangGenomicLandscapeMantle2014]||
63
+|[DLC1](DLC1)|2|[@zhangGenomicLandscapeMantle2014]||
64
+|[DLGAP2](DLGAP2)|2|[@beaLandscapeSomaticMutations2013]||
65
+|[DNAJC6](DNAJC6)|2|[@beaLandscapeSomaticMutations2013]||
66
+|[EIF2AK4](EIF2AK4)|2|[@zhangGenomicLandscapeMantle2014]||
67
+|[ESX1](ESX1)|2|[@zhangGenomicLandscapeMantle2014]||
68
+|[FAT4](FAT4)|2|[@zhangGenomicLandscapeMantle2014]|[@parryWholeExomeSequencing2013; @morinMutationalStructuralAnalysis2013]|
69
+|[GRIN2A](GRIN2A)|2|[@zhangGenomicLandscapeMantle2014]||
70
+|[HEPH](HEPH)|2|[@zhangGenomicLandscapeMantle2014]||
71
+|[KCNC2](KCNC2)|2|[@beaLandscapeSomaticMutations2013]||
72
+|[KIAA1671](KIAA1671)|2|[@beaLandscapeSomaticMutations2013]||
73
+|[KMT2C](KMT2C)|2|[@zhangGenomicLandscapeMantle2014]|[@zhouSporadicEndemicBurkitt2019; @zhangGeneticHeterogeneityDiffuse2013; @sarkozyMutationalLandscapeGray2021a]|
74
+|[LUZP4](LUZP4)|2|[@beaLandscapeSomaticMutations2013]||
75
+|[MRGPRF](MRGPRF)|2|[@zhangGenomicLandscapeMantle2014]||
76
+|[NIN](NIN)|2|[@zhangGenomicLandscapeMantle2014]||
77
+|[OGDHL](OGDHL)|2|[@zhangGenomicLandscapeMantle2014]||
78
+|[PCDHB2](PCDHB2)|2|[@zhangGenomicLandscapeMantle2014]||
79
+|[PCSK2](PCSK2)|2|[@beaLandscapeSomaticMutations2013]||
80
+|[PDLIM3](PDLIM3)|2|[@beaLandscapeSomaticMutations2013]||
81
+|[PLXNB3](PLXNB3)|2|[@zhangGenomicLandscapeMantle2014]|[@spinaGeneticsNodalMarginal2016b]|
82
+|[RGS4](RGS4)|2|[@beaLandscapeSomaticMutations2013]||
83
+|[ROBO2](ROBO2)|2|[@zhangGenomicLandscapeMantle2014]||
84
+|[SALL3](SALL3)|2|[@zhangGenomicLandscapeMantle2014]|[@loveGeneticLandscapeMutations2012]|
85
+|[SI](SI)|2|[@zhangGenomicLandscapeMantle2014]||
86
+|[SLC17A6](SLC17A6)|2|[@beaLandscapeSomaticMutations2013]||
87
+|[SMARCB1](SMARCB1)|2|[@nadeuGenomicEpigenomicInsights2020b]||
88
+|[SMC1A](SMC1A)|2|[@zhangGenomicLandscapeMantle2014]||
89
+|[TBC1D26](TBC1D26)|2|[@zhangGenomicLandscapeMantle2014]||
90
+|[TNRC6B](TNRC6B)|2|[@beaLandscapeSomaticMutations2013]||
91
+|[TRPM6](TRPM6)|2|[@beaLandscapeSomaticMutations2013]||
92
+|[ZNF117](ZNF117)|2|[@zhangGenomicLandscapeMantle2014]||
93
+|[ZNF296](ZNF296)|2|[@zhangGenomicLandscapeMantle2014]||
94 94
95 95
96 96
# References
MZL_genes.md
... ...
@@ -13,131 +13,131 @@ link-citations: true
13 13
14 14
### *42 total*
15 15
16
-|Gene|Tier| Relevant references|
17
-|:-:|:-:|:-|
18
-|[ACTB](ACTB)|1|[@lohrDiscoveryPrioritizationSomatic2012a; @wienandGenomicAnalysesFlowsorted2019b]|
19
-|[ARID1A](ARID1A)|1|[@krysiakRecurrentSomaticMutations2017b; @rossiCodingGenomeSplenic2012c; @zhangGeneticHeterogeneityDiffuse2013; @wienandGenomicAnalysesFlowsorted2019b; @loveGeneticLandscapeMutations2012]|
20
-|[ATM](ATM)|1|[@beaLandscapeSomaticMutations2013; @reddyGeneticFunctionalDrivers2017; @braggioGenomicAnalysisMarginal2012]|
21
-|[BCL10](BCL10)|1|[@spinaGeneticsNodalMarginal2016b; @russler-germainMutationsAssociatedProgression2023b; @morinFrequentMutationHistonemodifying2011]|
22
-|[BCL7A](BCL7A)|1|[@reichelFlowSortingExome2015a; @grandeGenomewideDiscoverySomatic2019; @arthurGenomewideDiscoverySomatic2018; @krysiakRecurrentSomaticMutations2017b]|
23
-|[BIRC3](BIRC3)|1|[@rossiAlterationBIRC3Multiple2011a; @beaLandscapeSomaticMutations2013; @arthurGenomewideDiscoverySomatic2018; @dunsCharacterizationDLBCLPMBL2021b]|
24
-|[BRAF](BRAF)|1|[@loveGeneticLandscapeMutations2012; @tiacciBRAFMutationsHairycell2011a]|
25
-|[BTG1](BTG1)|1|[@burkhardtClinicalRelevanceMolecular2022b; @sarkozyMutationalLandscapeGray2021a; @morinFrequentMutationHistonemodifying2011]|
26
-|[CARD11](CARD11)|1|[@lenzOncogenicCARD11Mutations2008; @wuGeneticHeterogeneityPrimary2016; @morinFrequentMutationHistonemodifying2011; @paneaWholeGenomeLandscape2019; @yanBCRTLRSignaling2012a]|
27
-|[CCND3](CCND3)|1|[@jalladesExomeSequencingIdentifies2017; @morinFrequentMutationHistonemodifying2011; @deschGenotypingCirculatingTumor2020; @richterRecurrentMutationID32012a]|
28
-|[CXCR4](CXCR4)|1|[@krysiakRecurrentSomaticMutations2017b; @paneaWholeGenomeLandscape2019; @khodabakhshiRecurrentTargetsAberrant2012]|
29
-|[DTX1](DTX1)|1|[@gomezUltraDeepSequencingReveals2023; @schmitzGeneticsPathogenesisDiffuse2018a; @paneaWholeGenomeLandscape2019; @rossiCodingGenomeSplenic2012c]|
30
-|[EP300](EP300)|1|[@pasqualucciInactivatingMutationsAcetyltransferase2011a; @rossiCodingGenomeSplenic2012c; @paneaWholeGenomeLandscape2019]|
31
-|[EZH2](EZH2)|1|[@loveGeneticLandscapeMutations2012; @mottokIntegrativeGenomicAnalysis2019b; @morinSomaticMutationsAltering2010a]|
32
-|[FAS](FAS)|1|[@spinaGeneticsNodalMarginal2016b; @schollMutationsRegionFAS2007]|
33
-|[FAT1](FAT1)|1|[@spinaGeneticsNodalMarginal2016b]|
34
-|[FOXO1](FOXO1)|1|[@schmitzBurkittLymphomaPathogenesis2012; @morinFrequentMutationHistonemodifying2011; @dunsCharacterizationDLBCLPMBL2021b]|
35
-|[H1-4](H1-4)|1||
36
-|[H1-5](H1-5)|1||
37
-|[ID3](ID3)|1|[@richterRecurrentMutationID32012a; @spinaGeneticsNodalMarginal2016b; @schmitzBurkittLymphomaPathogenesis2012]|
38
-|[KLF2](KLF2)|1|[@jalladesExomeSequencingIdentifies2017; @pasqualucciAnalysisCodingGenome2011; @deschGenotypingCirculatingTumor2020]|
39
-|[KLHL6](KLHL6)|1|[@paneaWholeGenomeLandscape2019; @morinFrequentMutationHistonemodifying2011; @ganapathiGeneticLandscapeDural2016]|
40
-|[KMT2D](KMT2D)|1|[@beaLandscapeSomaticMutations2013; @grandeGenomewideDiscoverySomatic2019; @deschGenotypingCirculatingTumor2020; @rossiCodingGenomeSplenic2012c; @morinFrequentMutationHistonemodifying2011]|
41
-|[MAP3K14](MAP3K14)|1|[@rossiAlterationBIRC3Multiple2011a; @ottoGeneticLesionsTRAF32012a]|
42
-|[MPEG1](MPEG1)|1|[@morinMutationalStructuralAnalysis2013]|
43
-|[MYD88](MYD88)|1|[@ngoOncogenicallyActiveMYD882011a; @yanBCRTLRSignaling2012a]|
44
-|[NCOR2](NCOR2)|1|[@sarkozyMutationalLandscapeGray2021a; @schmitzBurkittLymphomaPathogenesis2012; @spinaGeneticsNodalMarginal2016b]|
45
-|[NOL9](NOL9)|1|[@spinaGeneticsNodalMarginal2016b; @schmitzGeneticsPathogenesisDiffuse2018a]|
46
-|[NOTCH1](NOTCH1)|1|[@rossiCodingGenomeSplenic2012c; @loveGeneticLandscapeMutations2012; @beaLandscapeSomaticMutations2013; @pasqualucciAnalysisCodingGenome2011]|
47
-|[NOTCH2](NOTCH2)|1|[@troenNOTCH2MutationsMarginal2008; @paneaWholeGenomeLandscape2019; @rossiCodingGenomeSplenic2012c; @beaLandscapeSomaticMutations2013]|
48
-|[PCLO](PCLO)|1|[@lohrDiscoveryPrioritizationSomatic2012a]|
49
-|[POU2AF1](POU2AF1)|1|[@krysiakRecurrentSomaticMutations2017b]|
50
-|[PTPRD](PTPRD)|1|[@spinaGeneticsNodalMarginal2016b]|
51
-|[SIN3A](SIN3A)|1|[@rossiCodingGenomeSplenic2012c; @grandeGenomewideDiscoverySomatic2019]|
52
-|[SOCS1](SOCS1)|1|[@morinFrequentMutationHistonemodifying2011; @wenigerMutationsTumorSuppressor2006a]|
53
-|[SPEN](SPEN)|1|[@rossiCodingGenomeSplenic2012c; @sarkozyMutationalLandscapeGray2021a]|
54
-|[STAT6](STAT6)|1|[@ritzRecurrentMutationsSTAT62009a; @yildizActivatingSTAT6Mutations2015c]|
55
-|[TBL1XR1](TBL1XR1)|1|[@mareschalWholeExomeSequencing2016; @rossiCodingGenomeSplenic2012c]|
56
-|[TNFAIP3](TNFAIP3)|1|[@compagnoMutationsMultipleGenes2009a; @rossiAlterationBIRC3Multiple2011a; @schmitzTNFAIP3A20Tumor2009a]|
57
-|[TNFRSF14](TNFRSF14)|1|[@spinaGeneticsNodalMarginal2016b; @cheungAcquiredTNFRSF14Mutations2010a]|
58
-|[TP53](TP53)|1|[@tiacciPervasiveMutationsJAKSTAT2018b; @morinFrequentMutationHistonemodifying2011; @rossiCodingGenomeSplenic2012c; @beaLandscapeSomaticMutations2013; @wildaInactivationARFMDM2p53Pathway2004]|
59
-|[TRAF3](TRAF3)|1|[@ottoGeneticLesionsTRAF32012a; @rossiAlterationBIRC3Multiple2011a; @pasqualucciAnalysisCodingGenome2011]|
16
+|Gene|Tier| First MZL evidence | Other entities |
17
+|:-:|:-:|:-|:-|
18
+|[ACTB](ACTB)|1||[@wienandGenomicAnalysesFlowsorted2019b; @lohrDiscoveryPrioritizationSomatic2012a]|
19
+|[ARID1A](ARID1A)|1|[@rossiCodingGenomeSplenic2012c]|[@krysiakRecurrentSomaticMutations2017b; @zhangGeneticHeterogeneityDiffuse2013; @wienandGenomicAnalysesFlowsorted2019b; @loveGeneticLandscapeMutations2012]|
20
+|[ATM](ATM)|1|[@braggioGenomicAnalysisMarginal2012]|[@reddyGeneticFunctionalDrivers2017; @beaLandscapeSomaticMutations2013]|
21
+|[BCL10](BCL10)|1|[@spinaGeneticsNodalMarginal2016b]|[@russler-germainMutationsAssociatedProgression2023b; @morinFrequentMutationHistonemodifying2011]|
22
+|[BCL7A](BCL7A)|1||[@arthurGenomewideDiscoverySomatic2018; @grandeGenomewideDiscoverySomatic2019; @krysiakRecurrentSomaticMutations2017b; @reichelFlowSortingExome2015a]|
23
+|[BIRC3](BIRC3)|1|[@rossiAlterationBIRC3Multiple2011a]|[@beaLandscapeSomaticMutations2013; @arthurGenomewideDiscoverySomatic2018; @dunsCharacterizationDLBCLPMBL2021b]|
24
+|[BRAF](BRAF)|1||[@tiacciBRAFMutationsHairycell2011a; @loveGeneticLandscapeMutations2012]|
25
+|[BTG1](BTG1)|1||[@morinFrequentMutationHistonemodifying2011; @burkhardtClinicalRelevanceMolecular2022b; @sarkozyMutationalLandscapeGray2021a]|
26
+|[CARD11](CARD11)|1|[@yanBCRTLRSignaling2012a]|[@paneaWholeGenomeLandscape2019; @wuGeneticHeterogeneityPrimary2016; @morinFrequentMutationHistonemodifying2011; @lenzOncogenicCARD11Mutations2008]|
27
+|[CCND3](CCND3)|1|[@jalladesExomeSequencingIdentifies2017]|[@morinFrequentMutationHistonemodifying2011; @deschGenotypingCirculatingTumor2020; @richterRecurrentMutationID32012a]|
28
+|[CXCR4](CXCR4)|1||[@paneaWholeGenomeLandscape2019; @krysiakRecurrentSomaticMutations2017b; @khodabakhshiRecurrentTargetsAberrant2012]|
29
+|[DTX1](DTX1)|1|[@rossiCodingGenomeSplenic2012c]|[@gomezUltraDeepSequencingReveals2023; @schmitzGeneticsPathogenesisDiffuse2018a; @paneaWholeGenomeLandscape2019]|
30
+|[EP300](EP300)|1|[@rossiCodingGenomeSplenic2012c]|[@paneaWholeGenomeLandscape2019; @pasqualucciInactivatingMutationsAcetyltransferase2011a]|
31
+|[EZH2](EZH2)|1||[@mottokIntegrativeGenomicAnalysis2019b; @morinSomaticMutationsAltering2010a; @loveGeneticLandscapeMutations2012]|
32
+|[FAS](FAS)|1|[@spinaGeneticsNodalMarginal2016b]|[@schollMutationsRegionFAS2007]|
33
+|[FAT1](FAT1)|1|[@spinaGeneticsNodalMarginal2016b]||
34
+|[FOXO1](FOXO1)|1||[@morinFrequentMutationHistonemodifying2011; @dunsCharacterizationDLBCLPMBL2021b; @schmitzBurkittLymphomaPathogenesis2012]|
35
+|[H1-4](H1-4)|1|||
36
+|[H1-5](H1-5)|1|||
37
+|[ID3](ID3)|1|[@spinaGeneticsNodalMarginal2016b]|[@schmitzBurkittLymphomaPathogenesis2012; @richterRecurrentMutationID32012a]|
38
+|[KLF2](KLF2)|1|[@jalladesExomeSequencingIdentifies2017]|[@deschGenotypingCirculatingTumor2020; @pasqualucciAnalysisCodingGenome2011]|
39
+|[KLHL6](KLHL6)|1|[@ganapathiGeneticLandscapeDural2016]|[@morinFrequentMutationHistonemodifying2011; @paneaWholeGenomeLandscape2019]|
40
+|[KMT2D](KMT2D)|1|[@rossiCodingGenomeSplenic2012c]|[@morinFrequentMutationHistonemodifying2011; @grandeGenomewideDiscoverySomatic2019; @deschGenotypingCirculatingTumor2020; @beaLandscapeSomaticMutations2013]|
41
+|[MAP3K14](MAP3K14)|1|[@rossiAlterationBIRC3Multiple2011a]|[@ottoGeneticLesionsTRAF32012a]|
42
+|[MPEG1](MPEG1)|1||[@morinMutationalStructuralAnalysis2013]|
43
+|[MYD88](MYD88)|1|[@yanBCRTLRSignaling2012a]|[@ngoOncogenicallyActiveMYD882011a]|
44
+|[NCOR2](NCOR2)|1|[@spinaGeneticsNodalMarginal2016b]|[@schmitzBurkittLymphomaPathogenesis2012; @sarkozyMutationalLandscapeGray2021a]|
45
+|[NOL9](NOL9)|1|[@spinaGeneticsNodalMarginal2016b]|[@schmitzGeneticsPathogenesisDiffuse2018a]|
46
+|[NOTCH1](NOTCH1)|1|[@rossiCodingGenomeSplenic2012c]|[@pasqualucciAnalysisCodingGenome2011; @beaLandscapeSomaticMutations2013; @loveGeneticLandscapeMutations2012]|
47
+|[NOTCH2](NOTCH2)|1|[@rossiCodingGenomeSplenic2012c]|[@paneaWholeGenomeLandscape2019; @beaLandscapeSomaticMutations2013; @troenNOTCH2MutationsMarginal2008]|
48
+|[PCLO](PCLO)|1||[@lohrDiscoveryPrioritizationSomatic2012a]|
49
+|[POU2AF1](POU2AF1)|1||[@krysiakRecurrentSomaticMutations2017b]|
50
+|[PTPRD](PTPRD)|1|[@spinaGeneticsNodalMarginal2016b]||
51
+|[SIN3A](SIN3A)|1|[@rossiCodingGenomeSplenic2012c]|[@grandeGenomewideDiscoverySomatic2019]|
52
+|[SOCS1](SOCS1)|1||[@morinFrequentMutationHistonemodifying2011; @wenigerMutationsTumorSuppressor2006a]|
53
+|[SPEN](SPEN)|1|[@rossiCodingGenomeSplenic2012c]|[@sarkozyMutationalLandscapeGray2021a]|
54
+|[STAT6](STAT6)|1||[@yildizActivatingSTAT6Mutations2015c; @ritzRecurrentMutationsSTAT62009a]|
55
+|[TBL1XR1](TBL1XR1)|1|[@rossiCodingGenomeSplenic2012c]|[@mareschalWholeExomeSequencing2016]|
56
+|[TNFAIP3](TNFAIP3)|1|[@rossiAlterationBIRC3Multiple2011a]|[@compagnoMutationsMultipleGenes2009a; @schmitzTNFAIP3A20Tumor2009a]|
57
+|[TNFRSF14](TNFRSF14)|1|[@spinaGeneticsNodalMarginal2016b]|[@cheungAcquiredTNFRSF14Mutations2010a]|
58
+|[TP53](TP53)|1|[@rossiCodingGenomeSplenic2012c]|[@morinFrequentMutationHistonemodifying2011; @wildaInactivationARFMDM2p53Pathway2004; @beaLandscapeSomaticMutations2013; @tiacciPervasiveMutationsJAKSTAT2018b]|
59
+|[TRAF3](TRAF3)|1|[@rossiAlterationBIRC3Multiple2011a]|[@pasqualucciAnalysisCodingGenome2011; @ottoGeneticLesionsTRAF32012a]|
60 60
61 61
## Tier 2 MZL genes
62 62
63 63
### *74 total*
64 64
65
-|Gene|Tier| Relevant references|
66
-|:-:|:-:|:-|
67
-|[ABCA13](ABCA13)|2|[@spinaGeneticsNodalMarginal2016b; @sarkozyMutationalLandscapeGray2021a]|
68
-|[ACTG1](ACTG1)|2|[@hubschmannMutationalMechanismsShaping2021b; @spinaGeneticsNodalMarginal2016b; @deschGenotypingCirculatingTumor2020]|
69
-|[ADD2](ADD2)|2|[@spinaGeneticsNodalMarginal2016b]|
70
-|[AMN](AMN)|2|[@spinaGeneticsNodalMarginal2016b]|
71
-|[AMOTL1](AMOTL1)|2|[@parryWholeExomeSequencing2013]|
72
-|[AOC2](AOC2)|2|[@spinaGeneticsNodalMarginal2016b]|
73
-|[ARHGAP20](ARHGAP20)|2|[@jalladesExomeSequencingIdentifies2017]|
74
-|[ARHGEF15](ARHGEF15)|2|[@jalladesExomeSequencingIdentifies2017]|
75
-|[ARHGEF17](ARHGEF17)|2|[@jalladesExomeSequencingIdentifies2017]|
76
-|[BCOR](BCOR)|2|[@jalladesExomeSequencingIdentifies2017; @nadeuGenomicEpigenomicInsights2020b]|
77
-|[C6orf103](C6orf103)|2|[@spinaGeneticsNodalMarginal2016b]|
78
-|[CBFA2T3](CBFA2T3)|2|[@parryWholeExomeSequencing2013]|
79
-|[CD79A](CD79A)|2|[@rossiCodingGenomeSplenic2012c; @burkhardtClinicalRelevanceMolecular2022b]|
80
-|[CD9B](CD9B)|2|[@vandenbrandRecurrentMutationsGenes2017]|
81
-|[CDC42BPB](CDC42BPB)|2|[@spinaGeneticsNodalMarginal2016b]|
82
-|[CDKN2A](CDKN2A)|2|[@grandeGenomewideDiscoverySomatic2019; @spinaGeneticsNodalMarginal2016b; @morinMutationalStructuralAnalysis2013]|
83
-|[CLGN](CLGN)|2|[@spinaGeneticsNodalMarginal2016b]|
84
-|[CNKSR2](CNKSR2)|2|[@spinaGeneticsNodalMarginal2016b]|
85
-|[CREBBP](CREBBP)|2|[@dunsCharacterizationDLBCLPMBL2021b; @parryWholeExomeSequencing2013; @loveGeneticLandscapeMutations2012; @pasqualucciInactivatingMutationsAcetyltransferase2011a]|
86
-|[DNAH5](DNAH5)|2|[@jalladesExomeSequencingIdentifies2017; @morinMutationalStructuralAnalysis2013]|
87
-|[DNAH7](DNAH7)|2|[@jalladesExomeSequencingIdentifies2017]|
88
-|[DNAI1](DNAI1)|2|[@jalladesExomeSequencingIdentifies2017]|
89
-|[DOCK6](DOCK6)|2|[@jalladesExomeSequencingIdentifies2017]|
90
-|[DSP](DSP)|2||
91
-|[DTNB](DTNB)|2||
92
-|[DTX3L](DTX3L)|2|[@jalladesExomeSequencingIdentifies2017]|
93
-|[EGR1](EGR1)|2|[@reichelFlowSortingExome2015a; @rossiCodingGenomeSplenic2012c; @krysiakRecurrentSomaticMutations2017b]|
94
-|[EGR2](EGR2)|2|[@rossiCodingGenomeSplenic2012c]|
95
-|[EZH1](EZH1)|2|[@jalladesExomeSequencingIdentifies2017]|
96
-|[FAT4](FAT4)|2|[@zhangGenomicLandscapeMantle2014; @morinMutationalStructuralAnalysis2013; @parryWholeExomeSequencing2013]|
97
-|[FBXO11](FBXO11)|2|[@hubschmannMutationalMechanismsShaping2021b; @richterRecurrentMutationID32012a; @parryWholeExomeSequencing2013]|
98
-|[GPR98](GPR98)|2|[@spinaGeneticsNodalMarginal2016b]|
99
-|[GPS2](GPS2)|2|[@rossiCodingGenomeSplenic2012c]|
100
-|[HIST1H1D](HIST1H1D)|2|[@morinMutationalStructuralAnalysis2013; @krysiakRecurrentSomaticMutations2017b; @jalladesExomeSequencingIdentifies2017]|
101
-|[HIST1H2AD](HIST1H2AD)|2|[@jalladesExomeSequencingIdentifies2017]|
102
-|[HIST1H2AG](HIST1H2AG)|2|[@morinMutationalStructuralAnalysis2013; @paneaWholeGenomeLandscape2019; @krysiakRecurrentSomaticMutations2017b; @rossiCodingGenomeSplenic2012c]|
103
-|[HIST1H2BK](HIST1H2BK)|2|[@paneaWholeGenomeLandscape2019; @rossiCodingGenomeSplenic2012c]|
104
-|[HIST4H4](HIST4H4)|2|[@jalladesExomeSequencingIdentifies2017]|
105
-|[HRAS](HRAS)|2|[@jalladesExomeSequencingIdentifies2017; @reddyGeneticFunctionalDrivers2017]|
106
-|[IKBKB](IKBKB)|2|[@rossiAlterationBIRC3Multiple2011a; @wienandGenomicAnalysesFlowsorted2019b; @reddyGeneticFunctionalDrivers2017]|
107
-|[KAT6A](KAT6A)|2|[@jalladesExomeSequencingIdentifies2017]|
108
-|[KDM6A](KDM6A)|2|[@jalladesExomeSequencingIdentifies2017]|
109
-|[KIF26A](KIF26A)|2|[@jalladesExomeSequencingIdentifies2017]|
110
-|[LRP1B](LRP1B)|2|[@spinaGeneticsNodalMarginal2016b]|
111
-|[MCRS1](MCRS1)|2|[@rossiCodingGenomeSplenic2012c]|
112
-|[MGA](MGA)|2|[@zhangGeneticHeterogeneityDiffuse2013; @jalladesExomeSequencingIdentifies2017]|
113
-|[MSL2](MSL2)|2|[@rossiCodingGenomeSplenic2012c]|
114
-|[MYC](MYC)|2|[@jalladesExomeSequencingIdentifies2017; @dunsCharacterizationDLBCLPMBL2021b; @johnstonCmycHypermutationBurkitt1992; @pasqualucciHypermutationMultipleProtooncogenes2001a]|
115
-|[MYLK](MYLK)|2|[@jalladesExomeSequencingIdentifies2017]|
116
-|[NCOA6](NCOA6)|2|[@jalladesExomeSequencingIdentifies2017]|
117
-|[NRAS](NRAS)|2|[@jalladesExomeSequencingIdentifies2017]|
118
-|[PACRG](PACRG)|2|[@spinaGeneticsNodalMarginal2016b]|
119
-|[PARK2](PARK2)|2|[@spinaGeneticsNodalMarginal2016b]|
120
-|[PLA2G4D](PLA2G4D)|2|[@parryWholeExomeSequencing2013]|
121
-|[PLXNB3](PLXNB3)|2|[@spinaGeneticsNodalMarginal2016b; @zhangGenomicLandscapeMantle2014]|
122
-|[RAF1](RAF1)|2|[@jalladesExomeSequencingIdentifies2017]|
123
-|[RAPGEF2](RAPGEF2)|2||
124
-|[RCOR1](RCOR1)|2|[@spinaGeneticsNodalMarginal2016b]|
125
-|[RFTN1](RFTN1)|2|[@arthurGenomewideDiscoverySomatic2018; @dunsCharacterizationDLBCLPMBL2021b]|
126
-|[ROCK1](ROCK1)|2|[@jalladesExomeSequencingIdentifies2017]|
127
-|[RPL1L](RPL1L)|2|[@spinaGeneticsNodalMarginal2016b]|
128
-|[SAMD5](SAMD5)|2|[@spinaGeneticsNodalMarginal2016b]|
129
-|[SCG3](SCG3)|2|[@spinaGeneticsNodalMarginal2016b]|
130
-|[STXBP5](STXBP5)|2|[@spinaGeneticsNodalMarginal2016b]|
131
-|[SWAP70](SWAP70)|2|[@rossiCodingGenomeSplenic2012c]|
132
-|[TAF1](TAF1)|2|[@morinMutationalStructuralAnalysis2013; @spinaGeneticsNodalMarginal2016b]|
133
-|[TBK1](TBK1)|2|[@jalladesExomeSequencingIdentifies2017]|
134
-|[TCTN2](TCTN2)|2|[@spinaGeneticsNodalMarginal2016b]|
135
-|[TNIP2](TNIP2)|2|[@vandenbrandRecurrentMutationsGenes2017]|
136
-|[TRRAP](TRRAP)|2|[@rossiCodingGenomeSplenic2012c; @parryWholeExomeSequencing2013]|
137
-|[USH2A](USH2A)|2|[@parryWholeExomeSequencing2013]|
138
-|[WAC](WAC)|2|[@reddyGeneticFunctionalDrivers2017; @rossiCodingGenomeSplenic2012c]|
139
-|[WNK1](WNK1)|2|[@jalladesExomeSequencingIdentifies2017; @thomasGeneticSubgroupsInform2023; @hubschmannMutationalMechanismsShaping2021b]|
140
-|[ZNF9](ZNF9)|2|[@spinaGeneticsNodalMarginal2016b]|
65
+|Gene|Tier| First MZL evidence | Other entities |
66
+|:-:|:-:|:-|:-|
67
+|[ABCA13](ABCA13)|2|[@spinaGeneticsNodalMarginal2016b]|[@sarkozyMutationalLandscapeGray2021a]|
68
+|[ACTG1](ACTG1)|2|[@spinaGeneticsNodalMarginal2016b]|[@hubschmannMutationalMechanismsShaping2021b; @deschGenotypingCirculatingTumor2020]|
69
+|[ADD2](ADD2)|2|[@spinaGeneticsNodalMarginal2016b]||
70
+|[AMN](AMN)|2|[@spinaGeneticsNodalMarginal2016b]||
71
+|[AMOTL1](AMOTL1)|2|[@parryWholeExomeSequencing2013]||
72
+|[AOC2](AOC2)|2|[@spinaGeneticsNodalMarginal2016b]||
73
+|[ARHGAP20](ARHGAP20)|2|[@jalladesExomeSequencingIdentifies2017]||
74
+|[ARHGEF15](ARHGEF15)|2|[@jalladesExomeSequencingIdentifies2017]||
75
+|[ARHGEF17](ARHGEF17)|2|[@jalladesExomeSequencingIdentifies2017]||
76
+|[BCOR](BCOR)|2|[@jalladesExomeSequencingIdentifies2017]|[@nadeuGenomicEpigenomicInsights2020b]|
77
+|[C6orf103](C6orf103)|2|[@spinaGeneticsNodalMarginal2016b]||
78
+|[CBFA2T3](CBFA2T3)|2|[@parryWholeExomeSequencing2013]||
79
+|[CD79A](CD79A)|2|[@rossiCodingGenomeSplenic2012c]|[@burkhardtClinicalRelevanceMolecular2022b]|
80
+|[CD9B](CD9B)|2|[@vandenbrandRecurrentMutationsGenes2017]||
81
+|[CDC42BPB](CDC42BPB)|2|[@spinaGeneticsNodalMarginal2016b]||
82
+|[CDKN2A](CDKN2A)|2|[@spinaGeneticsNodalMarginal2016b]|[@morinMutationalStructuralAnalysis2013; @grandeGenomewideDiscoverySomatic2019]|
83
+|[CLGN](CLGN)|2|[@spinaGeneticsNodalMarginal2016b]||
84
+|[CNKSR2](CNKSR2)|2|[@spinaGeneticsNodalMarginal2016b]||
85
+|[CREBBP](CREBBP)|2|[@parryWholeExomeSequencing2013]|[@loveGeneticLandscapeMutations2012; @pasqualucciInactivatingMutationsAcetyltransferase2011a; @dunsCharacterizationDLBCLPMBL2021b]|
86
+|[DNAH5](DNAH5)|2|[@jalladesExomeSequencingIdentifies2017]|[@morinMutationalStructuralAnalysis2013]|
87
+|[DNAH7](DNAH7)|2|[@jalladesExomeSequencingIdentifies2017]||
88
+|[DNAI1](DNAI1)|2|[@jalladesExomeSequencingIdentifies2017]||
89
+|[DOCK6](DOCK6)|2|[@jalladesExomeSequencingIdentifies2017]||
90
+|[DSP](DSP)|2|||
91
+|[DTNB](DTNB)|2|||
92
+|[DTX3L](DTX3L)|2|[@jalladesExomeSequencingIdentifies2017]||
93
+|[EGR1](EGR1)|2|[@rossiCodingGenomeSplenic2012c]|[@krysiakRecurrentSomaticMutations2017b; @reichelFlowSortingExome2015a]|
94
+|[EGR2](EGR2)|2|[@rossiCodingGenomeSplenic2012c]||
95
+|[EZH1](EZH1)|2|[@jalladesExomeSequencingIdentifies2017]||
96
+|[FAT4](FAT4)|2|[@parryWholeExomeSequencing2013]|[@morinMutationalStructuralAnalysis2013; @zhangGenomicLandscapeMantle2014]|
97
+|[FBXO11](FBXO11)|2|[@parryWholeExomeSequencing2013]|[@richterRecurrentMutationID32012a; @hubschmannMutationalMechanismsShaping2021b]|
98
+|[GPR98](GPR98)|2|[@spinaGeneticsNodalMarginal2016b]||
99
+|[GPS2](GPS2)|2|[@rossiCodingGenomeSplenic2012c]||
100
+|[HIST1H1D](HIST1H1D)|2|[@jalladesExomeSequencingIdentifies2017]|[@krysiakRecurrentSomaticMutations2017b; @morinMutationalStructuralAnalysis2013]|
101
+|[HIST1H2AD](HIST1H2AD)|2|[@jalladesExomeSequencingIdentifies2017]||
102
+|[HIST1H2AG](HIST1H2AG)|2|[@rossiCodingGenomeSplenic2012c]|[@morinMutationalStructuralAnalysis2013; @paneaWholeGenomeLandscape2019; @krysiakRecurrentSomaticMutations2017b]|
103
+|[HIST1H2BK](HIST1H2BK)|2|[@rossiCodingGenomeSplenic2012c]|[@paneaWholeGenomeLandscape2019]|
104
+|[HIST4H4](HIST4H4)|2|[@jalladesExomeSequencingIdentifies2017]||
105
+|[HRAS](HRAS)|2|[@jalladesExomeSequencingIdentifies2017]|[@reddyGeneticFunctionalDrivers2017]|
106
+|[IKBKB](IKBKB)|2|[@rossiAlterationBIRC3Multiple2011a]|[@wienandGenomicAnalysesFlowsorted2019b; @reddyGeneticFunctionalDrivers2017]|
107
+|[KAT6A](KAT6A)|2|[@jalladesExomeSequencingIdentifies2017]||
108
+|[KDM6A](KDM6A)|2|[@jalladesExomeSequencingIdentifies2017]||
109
+|[KIF26A](KIF26A)|2|[@jalladesExomeSequencingIdentifies2017]||
110
+|[LRP1B](LRP1B)|2|[@spinaGeneticsNodalMarginal2016b]||
111
+|[MCRS1](MCRS1)|2|[@rossiCodingGenomeSplenic2012c]||
112
+|[MGA](MGA)|2|[@jalladesExomeSequencingIdentifies2017]|[@zhangGeneticHeterogeneityDiffuse2013]|
113
+|[MSL2](MSL2)|2|[@rossiCodingGenomeSplenic2012c]||
114
+|[MYC](MYC)|2|[@jalladesExomeSequencingIdentifies2017]|[@johnstonCmycHypermutationBurkitt1992; @dunsCharacterizationDLBCLPMBL2021b; @pasqualucciHypermutationMultipleProtooncogenes2001a]|
115
+|[MYLK](MYLK)|2|[@jalladesExomeSequencingIdentifies2017]||
116
+|[NCOA6](NCOA6)|2|[@jalladesExomeSequencingIdentifies2017]||
117
+|[NRAS](NRAS)|2|[@jalladesExomeSequencingIdentifies2017]||
118
+|[PACRG](PACRG)|2|[@spinaGeneticsNodalMarginal2016b]||
119
+|[PARK2](PARK2)|2|[@spinaGeneticsNodalMarginal2016b]||
120
+|[PLA2G4D](PLA2G4D)|2|[@parryWholeExomeSequencing2013]||
121
+|[PLXNB3](PLXNB3)|2|[@spinaGeneticsNodalMarginal2016b]|[@zhangGenomicLandscapeMantle2014]|
122
+|[RAF1](RAF1)|2|[@jalladesExomeSequencingIdentifies2017]||
123
+|[RAPGEF2](RAPGEF2)|2|||
124
+|[RCOR1](RCOR1)|2|[@spinaGeneticsNodalMarginal2016b]||
125
+|[RFTN1](RFTN1)|2||[@arthurGenomewideDiscoverySomatic2018; @dunsCharacterizationDLBCLPMBL2021b]|
126
+|[ROCK1](ROCK1)|2|[@jalladesExomeSequencingIdentifies2017]||
127
+|[RPL1L](RPL1L)|2|[@spinaGeneticsNodalMarginal2016b]||
128
+|[SAMD5](SAMD5)|2|[@spinaGeneticsNodalMarginal2016b]||
129
+|[SCG3](SCG3)|2|[@spinaGeneticsNodalMarginal2016b]||
130
+|[STXBP5](STXBP5)|2|[@spinaGeneticsNodalMarginal2016b]||
131
+|[SWAP70](SWAP70)|2|[@rossiCodingGenomeSplenic2012c]||
132
+|[TAF1](TAF1)|2|[@spinaGeneticsNodalMarginal2016b]|[@morinMutationalStructuralAnalysis2013]|
133
+|[TBK1](TBK1)|2|[@jalladesExomeSequencingIdentifies2017]||
134
+|[TCTN2](TCTN2)|2|[@spinaGeneticsNodalMarginal2016b]||
135
+|[TNIP2](TNIP2)|2|[@vandenbrandRecurrentMutationsGenes2017]||
136
+|[TRRAP](TRRAP)|2|[@rossiCodingGenomeSplenic2012c]|[@parryWholeExomeSequencing2013]|
137
+|[USH2A](USH2A)|2|[@parryWholeExomeSequencing2013]||
138
+|[WAC](WAC)|2|[@rossiCodingGenomeSplenic2012c]|[@reddyGeneticFunctionalDrivers2017]|
139
+|[WNK1](WNK1)|2|[@jalladesExomeSequencingIdentifies2017]|[@hubschmannMutationalMechanismsShaping2021b; @thomasGeneticSubgroupsInform2023]|
140
+|[ZNF9](ZNF9)|2|[@spinaGeneticsNodalMarginal2016b]||
141 141
142 142
143 143
# References
PMBL_genes.md
... ...
@@ -13,173 +13,173 @@ link-citations: true
13 13
14 14
### *76 total*
15 15
16
-|Gene|Tier| Relevant references|
17
-|:-:|:-:|:-|
18
-|[ACTB](ACTB)|1|[@lohrDiscoveryPrioritizationSomatic2012a; @wienandGenomicAnalysesFlowsorted2019b]|
19
-|[ARID1A](ARID1A)|1|[@rossiCodingGenomeSplenic2012c; @krysiakRecurrentSomaticMutations2017b; @zhangGeneticHeterogeneityDiffuse2013; @loveGeneticLandscapeMutations2012; @wienandGenomicAnalysesFlowsorted2019b]|
20
-|[ARID5B](ARID5B)|1|[@gomezUltraDeepSequencingReveals2023; @reddyGeneticFunctionalDrivers2017]|
21
-|[B2M](B2M)|1|[@pararajalingamCodingNoncodingDrivers2020; @reichelFlowSortingExome2015a; @morinFrequentMutationHistonemodifying2011]|
22
-|[BIRC6](BIRC6)|1|[@sarkozyMutationalLandscapeGray2021a; @reddyGeneticFunctionalDrivers2017]|
23
-|[BTG1](BTG1)|1|[@morinFrequentMutationHistonemodifying2011; @sarkozyMutationalLandscapeGray2021a; @burkhardtClinicalRelevanceMolecular2022b]|
24
-|[CD58](CD58)|1|[@morinFrequentMutationHistonemodifying2011; @schneiderAlterationsCD58Gene2015a]|
25
-|[CD83](CD83)|1|[@dunsCharacterizationDLBCLPMBL2021b; @paneaWholeGenomeLandscape2019; @russler-germainMutationsAssociatedProgression2023b; @morinMutationalStructuralAnalysis2013]|
26
-|[CDKN2A](CDKN2A)|1|[@grandeGenomewideDiscoverySomatic2019; @spinaGeneticsNodalMarginal2016b; @morinMutationalStructuralAnalysis2013]|
27
-|[CHD8](CHD8)|1|[@grandeGenomewideDiscoverySomatic2019; @reddyGeneticFunctionalDrivers2017]|
28
-|[CIITA](CIITA)|1|[@mottokGenomicAlterationsCIITA2015b; @morinFrequentMutationHistonemodifying2011]|
29
-|[CISH](CISH)|1|[@mottokIntegrativeGenomicAnalysis2019b]|
30
-|[CREBBP](CREBBP)|1|[@dunsCharacterizationDLBCLPMBL2021b; @parryWholeExomeSequencing2013; @loveGeneticLandscapeMutations2012; @pasqualucciInactivatingMutationsAcetyltransferase2011a]|
31
-|[CSF2RB](CSF2RB)|1|[@reichelFlowSortingExome2015a]|
32
-|[DDX3X](DDX3X)|1|[@schmitzGeneticsPathogenesisDiffuse2018a; @schmitzBurkittLymphomaPathogenesis2012; @mottokIntegrativeGenomicAnalysis2019b]|
33
-|[DTX1](DTX1)|1|[@rossiCodingGenomeSplenic2012c; @paneaWholeGenomeLandscape2019; @schmitzGeneticsPathogenesisDiffuse2018a; @gomezUltraDeepSequencingReveals2023]|
34
-|[DUSP2](DUSP2)|1|[@morinMutationalStructuralAnalysis2013; @dunsCharacterizationDLBCLPMBL2021b]|
35
-|[EBF1](EBF1)|1|[@reichelFlowSortingExome2015a; @thomasGeneticSubgroupsInform2023; @bohleRoleEarlyBcell2013]|
36
-|[EEF1A1](EEF1A1)|1|[@reichelFlowSortingExome2015a; @hubschmannMutationalMechanismsShaping2021b]|
37
-|[ETS1](ETS1)|1|[@paneaWholeGenomeLandscape2019; @morinFrequentMutationHistonemodifying2011]|
38
-|[EWSR1](EWSR1)|1|[@pararajalingamCodingNoncodingDrivers2020]|
39
-|[EZH2](EZH2)|1|[@mottokIntegrativeGenomicAnalysis2019b; @morinSomaticMutationsAltering2010a; @loveGeneticLandscapeMutations2012]|
40
-|[FAS](FAS)|1|[@schollMutationsRegionFAS2007; @spinaGeneticsNodalMarginal2016b]|
41
-|[FAT1](FAT1)|1|[@spinaGeneticsNodalMarginal2016b]|
42
-|[FAT4](FAT4)|1|[@parryWholeExomeSequencing2013; @zhangGenomicLandscapeMantle2014; @morinMutationalStructuralAnalysis2013]|
43
-|[GNA13](GNA13)|1|[@loveGeneticLandscapeMutations2012; @reichelFlowSortingExome2015a; @morinFrequentMutationHistonemodifying2011]|
44
-|[HIST1H1B](HIST1H1B)|1|[@krysiakRecurrentSomaticMutations2017b; @sarkozyMutationalLandscapeGray2021a; @chapuyMolecularSubtypesDiffuse2018b]|
45
-|[HIST1H1C](HIST1H1C)|1|[@morinFrequentMutationHistonemodifying2011; @paneaWholeGenomeLandscape2019]|
46
-|[HIST1H1D](HIST1H1D)|1|[@krysiakRecurrentSomaticMutations2017b; @jalladesExomeSequencingIdentifies2017; @morinMutationalStructuralAnalysis2013]|
47
-|[HIST1H1E](HIST1H1E)|1|[@krysiakRecurrentSomaticMutations2017b; @grandeGenomewideDiscoverySomatic2019; @morinMutationalStructuralAnalysis2013; @reichelFlowSortingExome2015a]|
48
-|[HLA-B](HLA-B)|1|[@wienandGenomicAnalysesFlowsorted2019b]|
49
-|[IL4R](IL4R)|1|[@viganoSomaticIL4RMutations2018b; @dunsCharacterizationDLBCLPMBL2021b]|
50
-|[IRF8](IRF8)|1|[@paneaWholeGenomeLandscape2019; @morinFrequentMutationHistonemodifying2011; @mottokIntegrativeGenomicAnalysis2019b]|
51
-|[ITPKB](ITPKB)|1|[@schmitzGeneticsPathogenesisDiffuse2018a; @reichelFlowSortingExome2015a]|
52
-|[JAK1](JAK1)|1|[@mottokIntegrativeGenomicAnalysis2019b; @zhangGeneticHeterogeneityDiffuse2013]|
53
-|[KMT2C](KMT2C)|1|[@sarkozyMutationalLandscapeGray2021a; @zhangGeneticHeterogeneityDiffuse2013; @zhangGenomicLandscapeMantle2014; @zhouSporadicEndemicBurkitt2019]|
54
-|[LTB](LTB)|1|[@deschGenotypingCirculatingTumor2020; @chapuyMolecularSubtypesDiffuse2018b; @paneaWholeGenomeLandscape2019]|
55
-|[MAP3K14](MAP3K14)|1|[@rossiAlterationBIRC3Multiple2011a; @ottoGeneticLesionsTRAF32012a]|
56
-|[MS4A1](MS4A1)|1|[@mottokIntegrativeGenomicAnalysis2019b; @rushtonGeneticEvolutionaryPatterns2020]|
57
-|[NFKBIA](NFKBIA)|1|[@wienandGenomicAnalysesFlowsorted2019b; @lakeMutationsNFKBIAEncoding2009; @russler-germainMutationsAssociatedProgression2023b]|
58
-|[NFKBIE](NFKBIE)|1|[@mansouriFrequentNFKBIEDeletions2016; @morinGeneticLandscapesRelapsed2016; @pararajalingamCodingNoncodingDrivers2020]|
59
-|[OSBPL10](OSBPL10)|1|[@arthurGenomewideDiscoverySomatic2018]|
60
-|[P2RY8](P2RY8)|1|[@lohrDiscoveryPrioritizationSomatic2012a; @muppidiLossSignalingGa132014b]|
61
-|[PCLO](PCLO)|1|[@lohrDiscoveryPrioritizationSomatic2012a]|
62
-|[PHIP](PHIP)|1||
63
-|[PIM1](PIM1)|1|[@dunsCharacterizationDLBCLPMBL2021b; @pasqualucciHypermutationMultipleProtooncogenes2001a; @burkhardtClinicalRelevanceMolecular2022b]|
64
-|[PIM2](PIM2)|1|[@arthurGenomewideDiscoverySomatic2018; @reichelFlowSortingExome2015a]|
65
-|[PRKDC](PRKDC)|1|[@schmitzGeneticsPathogenesisDiffuse2018a; @hubschmannMutationalMechanismsShaping2021b]|
66
-|[PTPN1](PTPN1)|1|[@gunawardanaRecurrentSomaticMutations2014c]|
67
-|[PTPRD](PTPRD)|1|[@spinaGeneticsNodalMarginal2016b]|
68
-|[RHOA](RHOA)|1|[@richterRecurrentMutationID32012a]|
69
-|[S1PR2](S1PR2)|1|[@muppidiLossSignalingGa132014b; @morinFrequentMutationHistonemodifying2011]|
70
-|[SGK1](SGK1)|1|[@dunsCharacterizationDLBCLPMBL2021b; @morinFrequentMutationHistonemodifying2011]|
71
-|[SIN3A](SIN3A)|1|[@rossiCodingGenomeSplenic2012c; @grandeGenomewideDiscoverySomatic2019]|
72
-|[SMARCA2](SMARCA2)|1||
73
-|[SMARCA4](SMARCA4)|1|[@richterRecurrentMutationID32012a; @zhangGeneticHeterogeneityDiffuse2013; @krysiakRecurrentSomaticMutations2017b; @nadeuGenomicEpigenomicInsights2020b]|
74
-|[SOCS1](SOCS1)|1|[@wenigerMutationsTumorSuppressor2006a; @morinFrequentMutationHistonemodifying2011]|
75
-|[SPEN](SPEN)|1|[@rossiCodingGenomeSplenic2012c; @sarkozyMutationalLandscapeGray2021a]|
76
-|[STAT3](STAT3)|1|[@ohgamiSTAT3MutationsAre2014]|
77
-|[STAT6](STAT6)|1|[@ritzRecurrentMutationsSTAT62009a; @yildizActivatingSTAT6Mutations2015c]|
78
-|[TAP1](TAP1)|1|[@schmitzGeneticsPathogenesisDiffuse2018a]|
79
-|[TBL1XR1](TBL1XR1)|1|[@mareschalWholeExomeSequencing2016; @rossiCodingGenomeSplenic2012c]|
80
-|[TCF3](TCF3)|1|[@schmitzBurkittLymphomaPathogenesis2012]|
81
-|[TET3](TET3)|1||
82
-|[TMSB4X](TMSB4X)|1|[@albuquerqueEnhancingKnowledgeDiscovery2017a]|
83
-|[TNFAIP3](TNFAIP3)|1|[@compagnoMutationsMultipleGenes2009a; @rossiAlterationBIRC3Multiple2011a; @schmitzTNFAIP3A20Tumor2009a]|
84
-|[TNFRSF1B](TNFRSF1B)|1||
85
-|[TP53](TP53)|1|[@wildaInactivationARFMDM2p53Pathway2004; @beaLandscapeSomaticMutations2013; @tiacciPervasiveMutationsJAKSTAT2018b; @morinFrequentMutationHistonemodifying2011; @rossiCodingGenomeSplenic2012c]|
86
-|[TRAF3](TRAF3)|1|[@pasqualucciAnalysisCodingGenome2011; @rossiAlterationBIRC3Multiple2011a; @ottoGeneticLesionsTRAF32012a]|
87
-|[UBE2A](UBE2A)|1|[@reichelFlowSortingExome2015a; @reddyGeneticFunctionalDrivers2017]|
88
-|[UBR5](UBR5)|1|[@pararajalingamCodingNoncodingDrivers2020; @zhangGeneticHeterogeneityDiffuse2013]|
89
-|[UNC5C](UNC5C)|1||
90
-|[VPS13B](VPS13B)|1||
91
-|[WEE1](WEE1)|1|[@reichelFlowSortingExome2015a; @schmitzGeneticsPathogenesisDiffuse2018a]|
92
-|[XPO1](XPO1)|1|[@jardinRecurrentMutationsExportin2016a; @mareschalWholeExomeSequencing2016]|
93
-|[ZFP36L1](ZFP36L1)|1|[@morinFrequentMutationHistonemodifying2011; @paneaWholeGenomeLandscape2019; @reichelFlowSortingExome2015a]|
16
+|Gene|Tier| First PMBL evidence | Other entities |
17
+|:-:|:-:|:-|:-|
18
+|[ACTB](ACTB)|1|[@wienandGenomicAnalysesFlowsorted2019b]|[@lohrDiscoveryPrioritizationSomatic2012a]|
19
+|[ARID1A](ARID1A)|1|[@wienandGenomicAnalysesFlowsorted2019b]|[@zhangGeneticHeterogeneityDiffuse2013; @rossiCodingGenomeSplenic2012c; @loveGeneticLandscapeMutations2012; @krysiakRecurrentSomaticMutations2017b]|
20
+|[ARID5B](ARID5B)|1|[@gomezUltraDeepSequencingReveals2023]|[@reddyGeneticFunctionalDrivers2017]|
21
+|[B2M](B2M)|1|[@reichelFlowSortingExome2015a]|[@morinFrequentMutationHistonemodifying2011; @pararajalingamCodingNoncodingDrivers2020]|
22
+|[BIRC6](BIRC6)|1|[@sarkozyMutationalLandscapeGray2021a]|[@reddyGeneticFunctionalDrivers2017]|
23
+|[BTG1](BTG1)|1|[@sarkozyMutationalLandscapeGray2021a]|[@burkhardtClinicalRelevanceMolecular2022b; @morinFrequentMutationHistonemodifying2011]|
24
+|[CD58](CD58)|1|[@schneiderAlterationsCD58Gene2015a]|[@morinFrequentMutationHistonemodifying2011]|
25
+|[CD83](CD83)|1|[@dunsCharacterizationDLBCLPMBL2021b]|[@morinMutationalStructuralAnalysis2013; @russler-germainMutationsAssociatedProgression2023b; @paneaWholeGenomeLandscape2019]|
26
+|[CDKN2A](CDKN2A)|1||[@spinaGeneticsNodalMarginal2016b; @morinMutationalStructuralAnalysis2013; @grandeGenomewideDiscoverySomatic2019]|
27
+|[CHD8](CHD8)|1||[@reddyGeneticFunctionalDrivers2017; @grandeGenomewideDiscoverySomatic2019]|
28
+|[CIITA](CIITA)|1|[@mottokGenomicAlterationsCIITA2015b]|[@morinFrequentMutationHistonemodifying2011]|
29
+|[CISH](CISH)|1|[@mottokIntegrativeGenomicAnalysis2019b]||
30
+|[CREBBP](CREBBP)|1|[@dunsCharacterizationDLBCLPMBL2021b]|[@loveGeneticLandscapeMutations2012; @parryWholeExomeSequencing2013; @pasqualucciInactivatingMutationsAcetyltransferase2011a]|
31
+|[CSF2RB](CSF2RB)|1|[@reichelFlowSortingExome2015a]||
32
+|[DDX3X](DDX3X)|1|[@mottokIntegrativeGenomicAnalysis2019b]|[@schmitzGeneticsPathogenesisDiffuse2018a; @schmitzBurkittLymphomaPathogenesis2012]|
33
+|[DTX1](DTX1)|1|[@gomezUltraDeepSequencingReveals2023]|[@schmitzGeneticsPathogenesisDiffuse2018a; @rossiCodingGenomeSplenic2012c; @paneaWholeGenomeLandscape2019]|
34
+|[DUSP2](DUSP2)|1|[@dunsCharacterizationDLBCLPMBL2021b]|[@morinMutationalStructuralAnalysis2013]|
35
+|[EBF1](EBF1)|1|[@reichelFlowSortingExome2015a]|[@thomasGeneticSubgroupsInform2023; @bohleRoleEarlyBcell2013]|
36
+|[EEF1A1](EEF1A1)|1|[@reichelFlowSortingExome2015a]|[@hubschmannMutationalMechanismsShaping2021b]|
37
+|[ETS1](ETS1)|1||[@paneaWholeGenomeLandscape2019; @morinFrequentMutationHistonemodifying2011]|
38
+|[EWSR1](EWSR1)|1||[@pararajalingamCodingNoncodingDrivers2020]|
39
+|[EZH2](EZH2)|1|[@mottokIntegrativeGenomicAnalysis2019b]|[@loveGeneticLandscapeMutations2012; @morinSomaticMutationsAltering2010a]|
40
+|[FAS](FAS)|1||[@schollMutationsRegionFAS2007; @spinaGeneticsNodalMarginal2016b]|
41
+|[FAT1](FAT1)|1||[@spinaGeneticsNodalMarginal2016b]|
42
+|[FAT4](FAT4)|1||[@zhangGenomicLandscapeMantle2014; @morinMutationalStructuralAnalysis2013; @parryWholeExomeSequencing2013]|
43
+|[GNA13](GNA13)|1|[@reichelFlowSortingExome2015a]|[@loveGeneticLandscapeMutations2012; @morinFrequentMutationHistonemodifying2011]|
44
+|[HIST1H1B](HIST1H1B)|1|[@sarkozyMutationalLandscapeGray2021a]|[@krysiakRecurrentSomaticMutations2017b; @chapuyMolecularSubtypesDiffuse2018b]|
45
+|[HIST1H1C](HIST1H1C)|1||[@paneaWholeGenomeLandscape2019; @morinFrequentMutationHistonemodifying2011]|
46
+|[HIST1H1D](HIST1H1D)|1||[@krysiakRecurrentSomaticMutations2017b; @morinMutationalStructuralAnalysis2013; @jalladesExomeSequencingIdentifies2017]|
47
+|[HIST1H1E](HIST1H1E)|1|[@reichelFlowSortingExome2015a]|[@grandeGenomewideDiscoverySomatic2019; @krysiakRecurrentSomaticMutations2017b; @morinMutationalStructuralAnalysis2013]|
48
+|[HLA-B](HLA-B)|1|[@wienandGenomicAnalysesFlowsorted2019b]||
49
+|[IL4R](IL4R)|1|[@viganoSomaticIL4RMutations2018b]|[@dunsCharacterizationDLBCLPMBL2021b]|
50
+|[IRF8](IRF8)|1|[@mottokIntegrativeGenomicAnalysis2019b]|[@morinFrequentMutationHistonemodifying2011; @paneaWholeGenomeLandscape2019]|
51
+|[ITPKB](ITPKB)|1|[@reichelFlowSortingExome2015a]|[@schmitzGeneticsPathogenesisDiffuse2018a]|
52
+|[JAK1](JAK1)|1|[@mottokIntegrativeGenomicAnalysis2019b]|[@zhangGeneticHeterogeneityDiffuse2013]|
53
+|[KMT2C](KMT2C)|1|[@sarkozyMutationalLandscapeGray2021a]|[@zhangGenomicLandscapeMantle2014; @zhangGeneticHeterogeneityDiffuse2013; @zhouSporadicEndemicBurkitt2019]|
54
+|[LTB](LTB)|1|[@deschGenotypingCirculatingTumor2020]|[@chapuyMolecularSubtypesDiffuse2018b; @paneaWholeGenomeLandscape2019]|
55
+|[MAP3K14](MAP3K14)|1|[@ottoGeneticLesionsTRAF32012a]|[@rossiAlterationBIRC3Multiple2011a]|
56
+|[MS4A1](MS4A1)|1|[@mottokIntegrativeGenomicAnalysis2019b]|[@rushtonGeneticEvolutionaryPatterns2020]|
57
+|[NFKBIA](NFKBIA)|1|[@wienandGenomicAnalysesFlowsorted2019b]|[@russler-germainMutationsAssociatedProgression2023b; @lakeMutationsNFKBIAEncoding2009]|
58
+|[NFKBIE](NFKBIE)|1|[@mansouriFrequentNFKBIEDeletions2016]|[@pararajalingamCodingNoncodingDrivers2020; @morinGeneticLandscapesRelapsed2016]|
59
+|[OSBPL10](OSBPL10)|1||[@arthurGenomewideDiscoverySomatic2018]|
60
+|[P2RY8](P2RY8)|1||[@lohrDiscoveryPrioritizationSomatic2012a; @muppidiLossSignalingGa132014b]|
61
+|[PCLO](PCLO)|1||[@lohrDiscoveryPrioritizationSomatic2012a]|
62
+|[PHIP](PHIP)|1|||
63
+|[PIM1](PIM1)|1|[@dunsCharacterizationDLBCLPMBL2021b]|[@pasqualucciHypermutationMultipleProtooncogenes2001a; @burkhardtClinicalRelevanceMolecular2022b]|
64
+|[PIM2](PIM2)|1|[@reichelFlowSortingExome2015a]|[@arthurGenomewideDiscoverySomatic2018]|
65
+|[PRKDC](PRKDC)|1||[@schmitzGeneticsPathogenesisDiffuse2018a; @hubschmannMutationalMechanismsShaping2021b]|
66
+|[PTPN1](PTPN1)|1|[@gunawardanaRecurrentSomaticMutations2014c]||
67
+|[PTPRD](PTPRD)|1||[@spinaGeneticsNodalMarginal2016b]|
68
+|[RHOA](RHOA)|1||[@richterRecurrentMutationID32012a]|
69
+|[S1PR2](S1PR2)|1||[@muppidiLossSignalingGa132014b; @morinFrequentMutationHistonemodifying2011]|
70
+|[SGK1](SGK1)|1|[@dunsCharacterizationDLBCLPMBL2021b]|[@morinFrequentMutationHistonemodifying2011]|
71
+|[SIN3A](SIN3A)|1||[@rossiCodingGenomeSplenic2012c; @grandeGenomewideDiscoverySomatic2019]|
72
+|[SMARCA2](SMARCA2)|1|||
73
+|[SMARCA4](SMARCA4)|1||[@krysiakRecurrentSomaticMutations2017b; @nadeuGenomicEpigenomicInsights2020b; @zhangGeneticHeterogeneityDiffuse2013; @richterRecurrentMutationID32012a]|
74
+|[SOCS1](SOCS1)|1|[@wenigerMutationsTumorSuppressor2006a]|[@morinFrequentMutationHistonemodifying2011]|
75
+|[SPEN](SPEN)|1|[@sarkozyMutationalLandscapeGray2021a]|[@rossiCodingGenomeSplenic2012c]|
76
+|[STAT3](STAT3)|1||[@ohgamiSTAT3MutationsAre2014]|
77
+|[STAT6](STAT6)|1|[@ritzRecurrentMutationsSTAT62009a]|[@yildizActivatingSTAT6Mutations2015c]|
78
+|[TAP1](TAP1)|1||[@schmitzGeneticsPathogenesisDiffuse2018a]|
79
+|[TBL1XR1](TBL1XR1)|1||[@rossiCodingGenomeSplenic2012c; @mareschalWholeExomeSequencing2016]|
80
+|[TCF3](TCF3)|1||[@schmitzBurkittLymphomaPathogenesis2012]|
81
+|[TET3](TET3)|1|||
82
+|[TMSB4X](TMSB4X)|1||[@albuquerqueEnhancingKnowledgeDiscovery2017a]|
83
+|[TNFAIP3](TNFAIP3)|1|[@schmitzTNFAIP3A20Tumor2009a]|[@rossiAlterationBIRC3Multiple2011a; @compagnoMutationsMultipleGenes2009a]|
84
+|[TNFRSF1B](TNFRSF1B)|1|||
85
+|[TP53](TP53)|1|[@tiacciPervasiveMutationsJAKSTAT2018b]|[@morinFrequentMutationHistonemodifying2011; @beaLandscapeSomaticMutations2013; @wildaInactivationARFMDM2p53Pathway2004; @rossiCodingGenomeSplenic2012c]|
86
+|[TRAF3](TRAF3)|1|[@ottoGeneticLesionsTRAF32012a]|[@rossiAlterationBIRC3Multiple2011a; @pasqualucciAnalysisCodingGenome2011]|
87
+|[UBE2A](UBE2A)|1|[@reichelFlowSortingExome2015a]|[@reddyGeneticFunctionalDrivers2017]|
88
+|[UBR5](UBR5)|1||[@pararajalingamCodingNoncodingDrivers2020; @zhangGeneticHeterogeneityDiffuse2013]|
89
+|[UNC5C](UNC5C)|1|||
90
+|[VPS13B](VPS13B)|1|||
91
+|[WEE1](WEE1)|1|[@reichelFlowSortingExome2015a]|[@schmitzGeneticsPathogenesisDiffuse2018a]|
92
+|[XPO1](XPO1)|1|[@jardinRecurrentMutationsExportin2016a]|[@mareschalWholeExomeSequencing2016]|
93
+|[ZFP36L1](ZFP36L1)|1|[@reichelFlowSortingExome2015a]|[@paneaWholeGenomeLandscape2019; @morinFrequentMutationHistonemodifying2011]|
94 94
95 95
## Tier 2 PMBL genes
96 96
97 97
### *82 total*
98 98
99
-|Gene|Tier| Relevant references|
100
-|:-:|:-:|:-|
101
-|[ABCA13](ABCA13)|2|[@sarkozyMutationalLandscapeGray2021a; @spinaGeneticsNodalMarginal2016b]|
102
-|[ACTG1](ACTG1)|2|[@hubschmannMutationalMechanismsShaping2021b; @spinaGeneticsNodalMarginal2016b; @deschGenotypingCirculatingTumor2020]|
103
-|[AKAP6](AKAP6)|2|[@tiacciPervasiveMutationsJAKSTAT2018b]|
104
-|[ARIH2](ARIH2)|2|[@reichelFlowSortingExome2015a]|
105
-|[AXDND1](AXDND1)|2|[@gomezUltraDeepSequencingReveals2023]|
106
-|[BCL2](BCL2)|2|[@burkhardtClinicalRelevanceMolecular2022b; @tanakaFrequentIncidenceSomatic1992; @morinFrequentMutationHistonemodifying2011; @sarkozyMutationalLandscapeGray2021a]|
107
-|[BCL7A](BCL7A)|2|[@grandeGenomewideDiscoverySomatic2019; @reichelFlowSortingExome2015a; @krysiakRecurrentSomaticMutations2017b; @arthurGenomewideDiscoverySomatic2018]|
108
-|[BIRC3](BIRC3)|2|[@rossiAlterationBIRC3Multiple2011a; @beaLandscapeSomaticMutations2013; @arthurGenomewideDiscoverySomatic2018; @dunsCharacterizationDLBCLPMBL2021b]|
109
-|[CCND3](CCND3)|2|[@jalladesExomeSequencingIdentifies2017; @morinFrequentMutationHistonemodifying2011; @deschGenotypingCirculatingTumor2020; @richterRecurrentMutationID32012a]|
110
-|[CDH2](CDH2)|2|[@deschGenotypingCirculatingTumor2020]|
111
-|[CDH5](CDH5)|2|[@gomezUltraDeepSequencingReveals2023]|
112
-|[CXCR5](CXCR5)|2|[@mottokIntegrativeGenomicAnalysis2019b; @schmitzGeneticsPathogenesisDiffuse2018a]|
113
-|[DGKB](DGKB)|2|[@tiacciPervasiveMutationsJAKSTAT2018b]|
114
-|[DMD](DMD)|2|[@reichelFlowSortingExome2015a]|
115
-|[DNAH12](DNAH12)|2|[@wienandGenomicAnalysesFlowsorted2019b]|
116
-|[EGR1](EGR1)|2|[@reichelFlowSortingExome2015a; @krysiakRecurrentSomaticMutations2017b; @rossiCodingGenomeSplenic2012c]|
117
-|[EPHA7](EPHA7)|2|[@mottokIntegrativeGenomicAnalysis2019b]|
118
-|[EZR](EZR)|2|[@deschGenotypingCirculatingTumor2020]|
119
-|[FOXO1](FOXO1)|2|[@morinFrequentMutationHistonemodifying2011; @dunsCharacterizationDLBCLPMBL2021b; @schmitzBurkittLymphomaPathogenesis2012]|
120
-|[GCSAM](GCSAM)|2|[@mottokIntegrativeGenomicAnalysis2019b]|
121
-|[GPR126](GPR126)|2|[@wenigerMutationsTumorSuppressor2006a]|
122
-|[HECW2](HECW2)|2|[@reichelFlowSortingExome2015a]|
123
-|[HELLS](HELLS)|2|[@reichelFlowSortingExome2015a]|
124
-|[HIST1H2BC](HIST1H2BC)|2|[@reddyGeneticFunctionalDrivers2017; @mottokIntegrativeGenomicAnalysis2019b; @krysiakRecurrentSomaticMutations2017b]|
125
-|[HIST1H3B](HIST1H3B)|2|[@zhangGeneticHeterogeneityDiffuse2013; @reichelFlowSortingExome2015a]|
126
-|[HIST1H4C](HIST1H4C)|2|[@reichelFlowSortingExome2015a]|
127
-|[HIST1H4E](HIST1H4E)|2|[@mottokIntegrativeGenomicAnalysis2019b]|
128
-|[HIST1H4J](HIST1H4J)|2|[@paneaWholeGenomeLandscape2019; @mottokIntegrativeGenomicAnalysis2019b]|
129
-|[HLA-A](HLA-A)|2|[@deschGenotypingCirculatingTumor2020]|
130
-|[HLA-C](HLA-C)|2|[@gomezUltraDeepSequencingReveals2023]|
131
-|[HRNR](HRNR)|2|[@dunsCharacterizationDLBCLPMBL2021b]|
132
-|[IGLL5](IGLL5)|2|[@russler-germainMutationsAssociatedProgression2023b; @paneaWholeGenomeLandscape2019; @deschGenotypingCirculatingTumor2020]|
133
-|[IKBKB](IKBKB)|2|[@rossiAlterationBIRC3Multiple2011a; @wienandGenomicAnalysesFlowsorted2019b; @reddyGeneticFunctionalDrivers2017]|
134
-|[IL13RA1](IL13RA1)|2|[@mottokIntegrativeGenomicAnalysis2019b]|
135
-|[IL1RAPL2](IL1RAPL2)|2|[@mottokIntegrativeGenomicAnalysis2019b]|
136
-|[IRF2BP2](IRF2BP2)|2|[@mottokIntegrativeGenomicAnalysis2019b]|
137
-|[IRF4](IRF4)|2|[@morinFrequentMutationHistonemodifying2011; @mottokIntegrativeGenomicAnalysis2019b]|
138
-|[ITGB2](ITGB2)|2||
139
-|[ITPR3](ITPR3)|2|[@tiacciPervasiveMutationsJAKSTAT2018b; @loveGeneticLandscapeMutations2012]|
140
-|[JUNB](JUNB)|2|[@reddyGeneticFunctionalDrivers2017; @mottokIntegrativeGenomicAnalysis2019b]|
141
-|[KLF2](KLF2)|2|[@pasqualucciAnalysisCodingGenome2011; @deschGenotypingCirculatingTumor2020; @jalladesExomeSequencingIdentifies2017]|
142
-|[KMT2D](KMT2D)|2|[@rossiCodingGenomeSplenic2012c; @morinFrequentMutationHistonemodifying2011; @beaLandscapeSomaticMutations2013; @grandeGenomewideDiscoverySomatic2019; @deschGenotypingCirculatingTumor2020]|
143
-|[LIMD2](LIMD2)|2|[@gomezUltraDeepSequencingReveals2023]|
144
-|[LPHN3](LPHN3)|2|[@dunsCharacterizationDLBCLPMBL2021b]|
145
-|[LRRN3](LRRN3)|2|[@morinMutationalStructuralAnalysis2013; @sarkozyMutationalLandscapeGray2021a]|
146
-|[MAGEC2](MAGEC2)|2|[@mottokIntegrativeGenomicAnalysis2019b]|
147
-|[MCL1](MCL1)|2|[@reddyGeneticFunctionalDrivers2017; @dunsCharacterizationDLBCLPMBL2021b; @paneaWholeGenomeLandscape2019]|
148
-|[MFHAS1](MFHAS1)|2|[@sarkozyMutationalLandscapeGray2021a]|
149
-|[MPDZ](MPDZ)|2|[@reichelFlowSortingExome2015a; @morinMutationalStructuralAnalysis2013]|
150
-|[MYB](MYB)|2|[@deschGenotypingCirculatingTumor2020; @reddyGeneticFunctionalDrivers2017]|
151
-|[MYC](MYC)|2|[@pasqualucciHypermutationMultipleProtooncogenes2001a; @jalladesExomeSequencingIdentifies2017; @dunsCharacterizationDLBCLPMBL2021b; @johnstonCmycHypermutationBurkitt1992]|
152
-|[NCOR2](NCOR2)|2|[@spinaGeneticsNodalMarginal2016b; @schmitzBurkittLymphomaPathogenesis2012; @sarkozyMutationalLandscapeGray2021a]|
153
-|[NEK1](NEK1)|2|[@reichelFlowSortingExome2015a]|
154
-|[NFKB2](NFKB2)|2|[@mottokIntegrativeGenomicAnalysis2019b; @reddyGeneticFunctionalDrivers2017]|
155
-|[NSD2](NSD2)|2|[@beaLandscapeSomaticMutations2013]|
156
-|[NUP214](NUP214)|2|[@tiacciPervasiveMutationsJAKSTAT2018b]|
157
-|[OR13C2](OR13C2)|2|[@gomezUltraDeepSequencingReveals2023]|
158
-|[PCBP1](PCBP1)|2|[@schmitzBurkittLymphomaPathogenesis2012]|
159
-|[PCDH7](PCDH7)|2||
160
-|[PRUNE2](PRUNE2)|2|[@tiacciPervasiveMutationsJAKSTAT2018b]|
161
-|[RANBP2](RANBP2)|2|[@reichelFlowSortingExome2015a]|
162
-|[RBM38](RBM38)|2|[@wienandGenomicAnalysesFlowsorted2019b]|
163
-|[RDH12](RDH12)|2||
164
-|[RELN](RELN)|2|[@sarkozyMutationalLandscapeGray2021a]|
165
-|[RFTN1](RFTN1)|2|[@arthurGenomewideDiscoverySomatic2018; @dunsCharacterizationDLBCLPMBL2021b]|
166
-|[RGS1](RGS1)|2|[@mottokIntegrativeGenomicAnalysis2019b]|
167
-|[SCN9A](SCN9A)|2||
168
-|[SENP7](SENP7)|2|[@reichelFlowSortingExome2015a]|
169
-|[SETD5](SETD5)|2|[@reddyGeneticFunctionalDrivers2017; @tiacciPervasiveMutationsJAKSTAT2018b]|
170
-|[SETDB1](SETDB1)|2|[@reichelFlowSortingExome2015a]|
171
-|[SIAH2](SIAH2)|2|[@hubschmannMutationalMechanismsShaping2021b; @reichelFlowSortingExome2015a]|
172
-|[SMAD3](SMAD3)|2||
173
-|[STAT5B](STAT5B)|2|[@zhangGeneticHeterogeneityDiffuse2013; @tiacciPervasiveMutationsJAKSTAT2018b]|
174
-|[STRAP](STRAP)|2||
175
-|[TBC1D15](TBC1D15)|2|[@reichelFlowSortingExome2015a]|
176
-|[TICRR](TICRR)|2|[@reichelFlowSortingExome2015a]|
177
-|[TNIP1](TNIP1)|2|[@tiacciPervasiveMutationsJAKSTAT2018b]|
178
-|[TRIP11](TRIP11)|2|[@reichelFlowSortingExome2015a]|
179
-|[VMP1](VMP1)|2|[@mottokIntegrativeGenomicAnalysis2019b]|
180
-|[WDR87](WDR87)|2|[@dunsCharacterizationDLBCLPMBL2021b]|
181
-|[ZCCHC11](ZCCHC11)|2|[@tiacciPervasiveMutationsJAKSTAT2018b]|
182
-|[ZNF217](ZNF217)|2|[@reichelFlowSortingExome2015a; @hubschmannMutationalMechanismsShaping2021b]|
99
+|Gene|Tier| First PMBL evidence | Other entities |
100
+|:-:|:-:|:-|:-|
101
+|[ABCA13](ABCA13)|2|[@sarkozyMutationalLandscapeGray2021a]|[@spinaGeneticsNodalMarginal2016b]|
102
+|[ACTG1](ACTG1)|2|[@deschGenotypingCirculatingTumor2020]|[@spinaGeneticsNodalMarginal2016b; @hubschmannMutationalMechanismsShaping2021b]|
103
+|[AKAP6](AKAP6)|2|[@tiacciPervasiveMutationsJAKSTAT2018b]||
104
+|[ARIH2](ARIH2)|2|[@reichelFlowSortingExome2015a]||
105
+|[AXDND1](AXDND1)|2|[@gomezUltraDeepSequencingReveals2023]||
106
+|[BCL2](BCL2)|2|[@sarkozyMutationalLandscapeGray2021a]|[@burkhardtClinicalRelevanceMolecular2022b; @morinFrequentMutationHistonemodifying2011; @tanakaFrequentIncidenceSomatic1992]|
107
+|[BCL7A](BCL7A)|2|[@reichelFlowSortingExome2015a]|[@arthurGenomewideDiscoverySomatic2018; @grandeGenomewideDiscoverySomatic2019; @krysiakRecurrentSomaticMutations2017b]|
108
+|[BIRC3](BIRC3)|2|[@dunsCharacterizationDLBCLPMBL2021b]|[@rossiAlterationBIRC3Multiple2011a; @beaLandscapeSomaticMutations2013; @arthurGenomewideDiscoverySomatic2018]|
109
+|[CCND3](CCND3)|2|[@deschGenotypingCirculatingTumor2020]|[@jalladesExomeSequencingIdentifies2017; @richterRecurrentMutationID32012a; @morinFrequentMutationHistonemodifying2011]|
110
+|[CDH2](CDH2)|2|[@deschGenotypingCirculatingTumor2020]||
111
+|[CDH5](CDH5)|2|[@gomezUltraDeepSequencingReveals2023]||
112
+|[CXCR5](CXCR5)|2|[@mottokIntegrativeGenomicAnalysis2019b]|[@schmitzGeneticsPathogenesisDiffuse2018a]|
113
+|[DGKB](DGKB)|2|[@tiacciPervasiveMutationsJAKSTAT2018b]||
114
+|[DMD](DMD)|2|[@reichelFlowSortingExome2015a]||
115
+|[DNAH12](DNAH12)|2|[@wienandGenomicAnalysesFlowsorted2019b]||
116
+|[EGR1](EGR1)|2|[@reichelFlowSortingExome2015a]|[@rossiCodingGenomeSplenic2012c; @krysiakRecurrentSomaticMutations2017b]|
117
+|[EPHA7](EPHA7)|2|[@mottokIntegrativeGenomicAnalysis2019b]||
118
+|[EZR](EZR)|2|[@deschGenotypingCirculatingTumor2020]||
119
+|[FOXO1](FOXO1)|2|[@dunsCharacterizationDLBCLPMBL2021b]|[@morinFrequentMutationHistonemodifying2011; @schmitzBurkittLymphomaPathogenesis2012]|
120
+|[GCSAM](GCSAM)|2|[@mottokIntegrativeGenomicAnalysis2019b]||
121
+|[GPR126](GPR126)|2|[@wenigerMutationsTumorSuppressor2006a]||
122
+|[HECW2](HECW2)|2|[@reichelFlowSortingExome2015a]||
123
+|[HELLS](HELLS)|2|[@reichelFlowSortingExome2015a]||
124
+|[HIST1H2BC](HIST1H2BC)|2|[@mottokIntegrativeGenomicAnalysis2019b]|[@krysiakRecurrentSomaticMutations2017b; @reddyGeneticFunctionalDrivers2017]|
125
+|[HIST1H3B](HIST1H3B)|2|[@reichelFlowSortingExome2015a]|[@zhangGeneticHeterogeneityDiffuse2013]|
126
+|[HIST1H4C](HIST1H4C)|2|[@reichelFlowSortingExome2015a]||
127
+|[HIST1H4E](HIST1H4E)|2|[@mottokIntegrativeGenomicAnalysis2019b]||
128
+|[HIST1H4J](HIST1H4J)|2|[@mottokIntegrativeGenomicAnalysis2019b]|[@paneaWholeGenomeLandscape2019]|
129
+|[HLA-A](HLA-A)|2|[@deschGenotypingCirculatingTumor2020]||
130
+|[HLA-C](HLA-C)|2|[@gomezUltraDeepSequencingReveals2023]||
131
+|[HRNR](HRNR)|2|[@dunsCharacterizationDLBCLPMBL2021b]||
132
+|[IGLL5](IGLL5)|2|[@deschGenotypingCirculatingTumor2020]|[@russler-germainMutationsAssociatedProgression2023b; @paneaWholeGenomeLandscape2019]|
133
+|[IKBKB](IKBKB)|2|[@wienandGenomicAnalysesFlowsorted2019b]|[@reddyGeneticFunctionalDrivers2017; @rossiAlterationBIRC3Multiple2011a]|
134
+|[IL13RA1](IL13RA1)|2|[@mottokIntegrativeGenomicAnalysis2019b]||
135
+|[IL1RAPL2](IL1RAPL2)|2|[@mottokIntegrativeGenomicAnalysis2019b]||
136
+|[IRF2BP2](IRF2BP2)|2|[@mottokIntegrativeGenomicAnalysis2019b]||
137
+|[IRF4](IRF4)|2|[@mottokIntegrativeGenomicAnalysis2019b]|[@morinFrequentMutationHistonemodifying2011]|
138
+|[ITGB2](ITGB2)|2|||
139
+|[ITPR3](ITPR3)|2|[@tiacciPervasiveMutationsJAKSTAT2018b]|[@loveGeneticLandscapeMutations2012]|
140
+|[JUNB](JUNB)|2|[@mottokIntegrativeGenomicAnalysis2019b]|[@reddyGeneticFunctionalDrivers2017]|
141
+|[KLF2](KLF2)|2|[@deschGenotypingCirculatingTumor2020]|[@jalladesExomeSequencingIdentifies2017; @pasqualucciAnalysisCodingGenome2011]|
142
+|[KMT2D](KMT2D)|2|[@deschGenotypingCirculatingTumor2020]|[@morinFrequentMutationHistonemodifying2011; @grandeGenomewideDiscoverySomatic2019; @beaLandscapeSomaticMutations2013; @rossiCodingGenomeSplenic2012c]|
143
+|[LIMD2](LIMD2)|2|[@gomezUltraDeepSequencingReveals2023]||
144
+|[LPHN3](LPHN3)|2|[@dunsCharacterizationDLBCLPMBL2021b]||
145
+|[LRRN3](LRRN3)|2|[@sarkozyMutationalLandscapeGray2021a]|[@morinMutationalStructuralAnalysis2013]|
146
+|[MAGEC2](MAGEC2)|2|[@mottokIntegrativeGenomicAnalysis2019b]||
147
+|[MCL1](MCL1)|2|[@dunsCharacterizationDLBCLPMBL2021b]|[@reddyGeneticFunctionalDrivers2017; @paneaWholeGenomeLandscape2019]|
148
+|[MFHAS1](MFHAS1)|2|[@sarkozyMutationalLandscapeGray2021a]||
149
+|[MPDZ](MPDZ)|2|[@reichelFlowSortingExome2015a]|[@morinMutationalStructuralAnalysis2013]|
150
+|[MYB](MYB)|2|[@deschGenotypingCirculatingTumor2020]|[@reddyGeneticFunctionalDrivers2017]|
151
+|[MYC](MYC)|2|[@dunsCharacterizationDLBCLPMBL2021b]|[@johnstonCmycHypermutationBurkitt1992; @jalladesExomeSequencingIdentifies2017; @pasqualucciHypermutationMultipleProtooncogenes2001a]|
152
+|[NCOR2](NCOR2)|2|[@sarkozyMutationalLandscapeGray2021a]|[@schmitzBurkittLymphomaPathogenesis2012; @spinaGeneticsNodalMarginal2016b]|
153
+|[NEK1](NEK1)|2|[@reichelFlowSortingExome2015a]||
154
+|[NFKB2](NFKB2)|2|[@mottokIntegrativeGenomicAnalysis2019b]|[@reddyGeneticFunctionalDrivers2017]|
155
+|[NSD2](NSD2)|2||[@beaLandscapeSomaticMutations2013]|
156
+|[NUP214](NUP214)|2|[@tiacciPervasiveMutationsJAKSTAT2018b]||
157
+|[OR13C2](OR13C2)|2|[@gomezUltraDeepSequencingReveals2023]||
158
+|[PCBP1](PCBP1)|2||[@schmitzBurkittLymphomaPathogenesis2012]|
159
+|[PCDH7](PCDH7)|2|||
160
+|[PRUNE2](PRUNE2)|2|[@tiacciPervasiveMutationsJAKSTAT2018b]||
161
+|[RANBP2](RANBP2)|2|[@reichelFlowSortingExome2015a]||
162
+|[RBM38](RBM38)|2|[@wienandGenomicAnalysesFlowsorted2019b]||
163
+|[RDH12](RDH12)|2|||
164
+|[RELN](RELN)|2|[@sarkozyMutationalLandscapeGray2021a]||
165
+|[RFTN1](RFTN1)|2|[@dunsCharacterizationDLBCLPMBL2021b]|[@arthurGenomewideDiscoverySomatic2018]|
166
+|[RGS1](RGS1)|2|[@mottokIntegrativeGenomicAnalysis2019b]||
167
+|[SCN9A](SCN9A)|2|||
168
+|[SENP7](SENP7)|2|[@reichelFlowSortingExome2015a]||
169
+|[SETD5](SETD5)|2|[@tiacciPervasiveMutationsJAKSTAT2018b]|[@reddyGeneticFunctionalDrivers2017]|
170
+|[SETDB1](SETDB1)|2|[@reichelFlowSortingExome2015a]||
171
+|[SIAH2](SIAH2)|2|[@reichelFlowSortingExome2015a]|[@hubschmannMutationalMechanismsShaping2021b]|
172
+|[SMAD3](SMAD3)|2|||
173
+|[STAT5B](STAT5B)|2|[@tiacciPervasiveMutationsJAKSTAT2018b]|[@zhangGeneticHeterogeneityDiffuse2013]|
174
+|[STRAP](STRAP)|2|||
175
+|[TBC1D15](TBC1D15)|2|[@reichelFlowSortingExome2015a]||
176
+|[TICRR](TICRR)|2|[@reichelFlowSortingExome2015a]||
177
+|[TNIP1](TNIP1)|2|[@tiacciPervasiveMutationsJAKSTAT2018b]||
178
+|[TRIP11](TRIP11)|2|[@reichelFlowSortingExome2015a]||
179
+|[VMP1](VMP1)|2|[@mottokIntegrativeGenomicAnalysis2019b]||
180
+|[WDR87](WDR87)|2|[@dunsCharacterizationDLBCLPMBL2021b]||
181
+|[ZCCHC11](ZCCHC11)|2|[@tiacciPervasiveMutationsJAKSTAT2018b]||
182
+|[ZNF217](ZNF217)|2|[@reichelFlowSortingExome2015a]|[@hubschmannMutationalMechanismsShaping2021b]|
183 183
184 184
185 185
# References