99210f645924ff632afa8067e96a8a69dce4be6a
BL_genes.md
| ... | ... | @@ -13,196 +13,196 @@ link-citations: true |
| 13 | 13 | |
| 14 | 14 | ### *29 total* |
| 15 | 15 | |
| 16 | -|Gene|Tier| First BL evidence | Other entities | |
|
| 17 | -|:-:|:-:|:--|:-| |
|
| 18 | -|[ARID1A](ARID1A)|1|[Love et al](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|[@wienandGenomicAnalysesFlowsorted2019b; @krysiakRecurrentSomaticMutations2017b; @rossiCodingGenomeSplenic2012c; @zhangGeneticHeterogeneityDiffuse2013]| |
|
| 19 | -|[BCL7A](BCL7A)|1|[Grande et al](papers/grandeGenomewideDiscoverySomatic2019)[@grandeGenomewideDiscoverySomatic2019]|[@reichelFlowSortingExome2015a; @zhangGeneticHeterogeneityDiffuse2013; @krysiakRecurrentSomaticMutations2017b]| |
|
| 20 | -|[BMP7](BMP7)|1|[Panea et al](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|| |
|
| 21 | -|[CCND3](CCND3)|1|[Richter et al](papers/richterRecurrentMutationID32012a)[@richterRecurrentMutationID32012a]|[@deschGenotypingCirculatingTumor2020; @morinFrequentMutationHistonemodifying2011; @jalladesExomeSequencingIdentifies2017]| |
|
| 22 | -|[CHD8](CHD8)|1|[Grande et al](papers/grandeGenomewideDiscoverySomatic2019)[@grandeGenomewideDiscoverySomatic2019]|| |
|
| 23 | -|[DDX3X](DDX3X)|1|[Schmitz et al](papers/schmitzBurkittLymphomaPathogenesis2012)[@schmitzBurkittLymphomaPathogenesis2012]|[@reddyGeneticFunctionalDrivers2017; @mottokIntegrativeGenomicAnalysis2019b]| |
|
| 24 | -|[EIF4A1](EIF4A1)|1|[Panea et al](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|| |
|
| 25 | -|[EPPK1](EPPK1)|1|[Panea et al](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|| |
|
| 26 | -|[FBXO11](FBXO11)|1|[Richter et al](papers/richterRecurrentMutationID32012a)[@richterRecurrentMutationID32012a]|[@parryWholeExomeSequencing2013; @hubschmannMutationalMechanismsShaping2021b]| |
|
| 27 | -|[FOXO1](FOXO1)|1|[Schmitz et al](papers/schmitzBurkittLymphomaPathogenesis2012)[@schmitzBurkittLymphomaPathogenesis2012]|[@dunsCharacterizationDLBCLPMBL2021b; @morinFrequentMutationHistonemodifying2011]| |
|
| 28 | -|[GNA13](GNA13)|1|[Love et al](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|[@reichelFlowSortingExome2015a; @morinFrequentMutationHistonemodifying2011]| |
|
| 29 | -|[GNAI2](GNAI2)|1|[Grande et al](papers/grandeGenomewideDiscoverySomatic2019)[@grandeGenomewideDiscoverySomatic2019]|[@morinMutationalStructuralAnalysis2013]| |
|
| 30 | -|[HNRNPU](HNRNPU)|1|[Panea et al](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|[@reddyGeneticFunctionalDrivers2017]| |
|
| 31 | -|[ID3](ID3)|1|[Richter et al](papers/richterRecurrentMutationID32012a)[@richterRecurrentMutationID32012a]|[@schmitzBurkittLymphomaPathogenesis2012; @spinaGeneticsNodalMarginal2016b]| |
|
| 32 | -|[KMT2D](KMT2D)|1|[Grande et al](papers/grandeGenomewideDiscoverySomatic2019)[@grandeGenomewideDiscoverySomatic2019]|[@beaLandscapeSomaticMutations2013; @morinFrequentMutationHistonemodifying2011; @deschGenotypingCirculatingTumor2020; @rossiCodingGenomeSplenic2012c]| |
|
| 33 | -|[MYC](MYC)|1|[Johnston et al](papers/johnstonCmycHypermutationBurkitt1992)[@johnstonCmycHypermutationBurkitt1992]|[@jalladesExomeSequencingIdentifies2017; @dunsCharacterizationDLBCLPMBL2021b; @pasqualucciHypermutationMultipleProtooncogenes2001a]| |
|
| 34 | -|[P2RY8](P2RY8)|1|[Muppidi et al](papers/muppidiLossSignalingGa132014b)[@muppidiLossSignalingGa132014b]|[@lohrDiscoveryPrioritizationSomatic2012a]| |
|
| 35 | -|[PHF6](PHF6)|1|[Thomas et al](papers/thomasGeneticSubgroupsInform2023)[@thomasGeneticSubgroupsInform2023]|[@reddyGeneticFunctionalDrivers2017]| |
|
| 36 | -|[PTEN](PTEN)|1|[Love et al](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|[@reddyGeneticFunctionalDrivers2017]| |
|
| 37 | -|[RFX7](RFX7)|1|[Grande et al](papers/grandeGenomewideDiscoverySomatic2019)[@grandeGenomewideDiscoverySomatic2019]|| |
|
| 38 | -|[RHOA](RHOA)|1|[Richter et al](papers/richterRecurrentMutationID32012a)[@richterRecurrentMutationID32012a]|[@zhangGeneticHeterogeneityDiffuse2013]| |
|
| 39 | -|[SIN3A](SIN3A)|1|[Grande et al](papers/grandeGenomewideDiscoverySomatic2019)[@grandeGenomewideDiscoverySomatic2019]|[@rossiCodingGenomeSplenic2012c; @chapuyMolecularSubtypesDiffuse2018b]| |
|
| 40 | -|[SMARCA4](SMARCA4)|1|[Richter et al](papers/richterRecurrentMutationID32012a)[@richterRecurrentMutationID32012a]|[@lohrDiscoveryPrioritizationSomatic2012a; @nadeuGenomicEpigenomicInsights2020b; @krysiakRecurrentSomaticMutations2017b]| |
|
| 41 | -|[TCF3](TCF3)|1|[Schmitz et al](papers/schmitzBurkittLymphomaPathogenesis2012)[@schmitzBurkittLymphomaPathogenesis2012]|| |
|
| 42 | -|[TCL1A](TCL1A)|1|[Grande et al](papers/grandeGenomewideDiscoverySomatic2019)[@grandeGenomewideDiscoverySomatic2019]|[@reddyGeneticFunctionalDrivers2017]| |
|
| 43 | -|[TFAP4](TFAP4)|1|[Grande et al](papers/grandeGenomewideDiscoverySomatic2019)[@grandeGenomewideDiscoverySomatic2019]|| |
|
| 44 | -|[TP53](TP53)|1|[Wilda et al](papers/wildaInactivationARFMDM2p53Pathway2004)[@wildaInactivationARFMDM2p53Pathway2004]|[@lohrDiscoveryPrioritizationSomatic2012a; @rossiCodingGenomeSplenic2012c; @tiacciPervasiveMutationsJAKSTAT2018b; @morinFrequentMutationHistonemodifying2011; @beaLandscapeSomaticMutations2013]| |
|
| 45 | -|[USP7](USP7)|1|[Grande et al](papers/grandeGenomewideDiscoverySomatic2019)[@grandeGenomewideDiscoverySomatic2019]|| |
|
| 46 | -|[WNK1](WNK1)|1|[Thomas et al](papers/thomasGeneticSubgroupsInform2023)[@thomasGeneticSubgroupsInform2023]|[@hubschmannMutationalMechanismsShaping2021b; @jalladesExomeSequencingIdentifies2017]| |
|
| 16 | +|Gene|Summary| First BL study | Other entities | QC result | |
|
| 17 | +|:-:|:-:|:-:|:-|:-| |
|
| 18 | +|[ARID1A](ARID1A)|Tier 1 GE[@loveGeneticLandscapeMutations2012]|[Love et al](papers/loveGeneticLandscapeMutations2012)|[@krysiakRecurrentSomaticMutations2017b; @rossiCodingGenomeSplenic2012c; @wienandGenomicAnalysesFlowsorted2019b; @zhangGeneticHeterogeneityDiffuse2013]|| |
|
| 19 | +|[BCL7A](BCL7A)|Tier 1 GE[@grandeGenomewideDiscoverySomatic2019], FE[@balinas-gaviraFrequentMutationsAminoterminal2020b]|[Grande et al](papers/grandeGenomewideDiscoverySomatic2019)|[@krysiakRecurrentSomaticMutations2017b; @morinFrequentMutationHistonemodifying2011; @reichelFlowSortingExome2015a]|| |
|
| 20 | +|[BMP7](BMP7)|Tier 1 GE[@paneaWholeGenomeLandscape2019]|[Panea et al](papers/paneaWholeGenomeLandscape2019)||| |
|
| 21 | +|[CCND3](CCND3)|Tier 1 GE[@richterRecurrentMutationID32012a], FE[@schmitzBurkittLymphomaPathogenesis2012]|[Richter et al](papers/richterRecurrentMutationID32012a)|[@deschGenotypingCirculatingTumor2020; @jalladesExomeSequencingIdentifies2017; @morinFrequentMutationHistonemodifying2011]|| |
|
| 22 | +|[CHD8](CHD8)|Tier 1 GE[@grandeGenomewideDiscoverySomatic2019]|[Grande et al](papers/grandeGenomewideDiscoverySomatic2019)||| |
|
| 23 | +|[DDX3X](DDX3X)|Tier 1 GE[@schmitzBurkittLymphomaPathogenesis2012], FE[@gongSequentialInverseDysregulation2021], CE[@kizhakeyilDDX3XLossAdverse2021]|[Schmitz et al](papers/schmitzBurkittLymphomaPathogenesis2012)|[@mottokIntegrativeGenomicAnalysis2019b; @reddyGeneticFunctionalDrivers2017]|| |
|
| 24 | +|[EIF4A1](EIF4A1)|Tier 1 GE[@paneaWholeGenomeLandscape2019]|[Panea et al](papers/paneaWholeGenomeLandscape2019)||| |
|
| 25 | +|[EPPK1](EPPK1)|Tier 1 GE[@paneaWholeGenomeLandscape2019]|[Panea et al](papers/paneaWholeGenomeLandscape2019)||| |
|
| 26 | +|[FBXO11](FBXO11)|Tier 1 GE[@richterRecurrentMutationID32012a], FE[@schneiderFBXO11InactivationLeads2016b]|[Richter et al](papers/richterRecurrentMutationID32012a)|[@hubschmannMutationalMechanismsShaping2021b; @parryWholeExomeSequencing2013]|| |
|
| 27 | +|[FOXO1](FOXO1)|Tier 1 GE[@schmitzBurkittLymphomaPathogenesis2012], FE[@trinhAnalysisFOXO1Mutations], CE[@trinhAnalysisFOXO1Mutations]|[Schmitz et al](papers/schmitzBurkittLymphomaPathogenesis2012)|[@dunsCharacterizationDLBCLPMBL2021b; @morinFrequentMutationHistonemodifying2011]|| |
|
| 28 | +|[GNA13](GNA13)|Tier 1 GE[@loveGeneticLandscapeMutations2012], FE[@muppidiLossSignalingGa132014b]|[Love et al](papers/loveGeneticLandscapeMutations2012)|[@morinFrequentMutationHistonemodifying2011; @reichelFlowSortingExome2015a]|| |
|
| 29 | +|[GNAI2](GNAI2)|Tier 1 GE[@grandeGenomewideDiscoverySomatic2019]|[Grande et al](papers/grandeGenomewideDiscoverySomatic2019)|[@morinMutationalStructuralAnalysis2013]|| |
|
| 30 | +|[HNRNPU](HNRNPU)|Tier 1 GE[@paneaWholeGenomeLandscape2019]|[Panea et al](papers/paneaWholeGenomeLandscape2019)|[@reddyGeneticFunctionalDrivers2017]|| |
|
| 31 | +|[ID3](ID3)|Tier 1 GE[@richterRecurrentMutationID32012a]|[Richter et al](papers/richterRecurrentMutationID32012a)|[@schmitzBurkittLymphomaPathogenesis2012; @spinaGeneticsNodalMarginal2016b]|| |
|
| 32 | +|[KMT2D](KMT2D)|Tier 1 GE[@grandeGenomewideDiscoverySomatic2019], FE[@liLossCREBBPKMT2D2024], CE[@rushtonGeneticEvolutionaryPatterns2020]|[Grande et al](papers/grandeGenomewideDiscoverySomatic2019)|[@beaLandscapeSomaticMutations2013; @deschGenotypingCirculatingTumor2020; @morinFrequentMutationHistonemodifying2011; @rossiCodingGenomeSplenic2012c]|| |
|
| 33 | +|[MYC](MYC)|Tier 1 GE[@johnstonCmycHypermutationBurkitt1992], FE[@giallongoIdentificationCmycOncogene1983], CE[@christieCMYCTranslocation142008]|[Johnston et al](papers/johnstonCmycHypermutationBurkitt1992)|[@dunsCharacterizationDLBCLPMBL2021b; @jalladesExomeSequencingIdentifies2017; @pasqualucciHypermutationMultipleProtooncogenes2001a]|| |
|
| 34 | +|[P2RY8](P2RY8)|Tier 1 GE[@muppidiLossSignalingGa132014b]|[Muppidi et al](papers/muppidiLossSignalingGa132014b)|[@lohrDiscoveryPrioritizationSomatic2012a]|| |
|
| 35 | +|[PHF6](PHF6)|Tier 1 GE[@thomasGeneticSubgroupsInform2023]|[Thomas et al](papers/thomasGeneticSubgroupsInform2023)|[@reddyGeneticFunctionalDrivers2017]|| |
|
| 36 | +|[PTEN](PTEN)|Tier 1 GE[@loveGeneticLandscapeMutations2012]|[Love et al](papers/loveGeneticLandscapeMutations2012)|[@reddyGeneticFunctionalDrivers2017]|| |
|
| 37 | +|[RFX7](RFX7)|Tier 1 GE[@grandeGenomewideDiscoverySomatic2019]|[Grande et al](papers/grandeGenomewideDiscoverySomatic2019)||| |
|
| 38 | +|[RHOA](RHOA)|Tier 1 GE[@richterRecurrentMutationID32012a]|[Richter et al](papers/richterRecurrentMutationID32012a)|[@zhangGeneticHeterogeneityDiffuse2013]|| |
|
| 39 | +|[SIN3A](SIN3A)|Tier 1 GE[@grandeGenomewideDiscoverySomatic2019]|[Grande et al](papers/grandeGenomewideDiscoverySomatic2019)|[@chapuyMolecularSubtypesDiffuse2018b; @rossiCodingGenomeSplenic2012c]|| |
|
| 40 | +|[SMARCA4](SMARCA4)|Tier 1 GE[@richterRecurrentMutationID32012a], FE[@dengSMARCA4HaploinsufficientCell2024]|[Richter et al](papers/richterRecurrentMutationID32012a)|[@krysiakRecurrentSomaticMutations2017b; @nadeuGenomicEpigenomicInsights2020b; @reddyGeneticFunctionalDrivers2017]|| |
|
| 41 | +|[TCF3](TCF3)|Tier 1 GE[@schmitzBurkittLymphomaPathogenesis2012]|[Schmitz et al](papers/schmitzBurkittLymphomaPathogenesis2012)||| |
|
| 42 | +|[TCL1A](TCL1A)|Tier 1 GE[@grandeGenomewideDiscoverySomatic2019]|[Grande et al](papers/grandeGenomewideDiscoverySomatic2019)|[@reddyGeneticFunctionalDrivers2017]|| |
|
| 43 | +|[TFAP4](TFAP4)|Tier 1 GE[@grandeGenomewideDiscoverySomatic2019]|[Grande et al](papers/grandeGenomewideDiscoverySomatic2019)||| |
|
| 44 | +|[TP53](TP53)|Tier 1 GE[@wildaInactivationARFMDM2p53Pathway2004], FE[@rowhTp53DeletionLineage2011]|[Wilda et al](papers/wildaInactivationARFMDM2p53Pathway2004)|[@beaLandscapeSomaticMutations2013; @lohrDiscoveryPrioritizationSomatic2012a; @morinFrequentMutationHistonemodifying2011; @rossiCodingGenomeSplenic2012c; @tiacciPervasiveMutationsJAKSTAT2018b]|| |
|
| 45 | +|[USP7](USP7)|Tier 1 GE[@grandeGenomewideDiscoverySomatic2019]|[Grande et al](papers/grandeGenomewideDiscoverySomatic2019)|[@arthurGenomewideDiscoverySomatic2018]|| |
|
| 46 | +|[WNK1](WNK1)|Tier 1 GE[@thomasGeneticSubgroupsInform2023]|[Thomas et al](papers/thomasGeneticSubgroupsInform2023)|[@hubschmannMutationalMechanismsShaping2021b; @jalladesExomeSequencingIdentifies2017]|| |
|
| 47 | 47 | |
| 48 | 48 | ## Tier 2 BL genes |
| 49 | 49 | |
| 50 | 50 | ### *75 total* |
| 51 | 51 | |
| 52 | -|Gene|Tier| First BL evidence | Other entities | |
|
| 53 | -|:-:|:-:|:--|:-| |
|
| 54 | -|[ADAMTS5](ADAMTS5)|2|[Burkhardt et al](papers/burkhardtClinicalRelevanceMolecular2022b)[@burkhardtClinicalRelevanceMolecular2022b]|| |
|
| 55 | -|[ADNP](ADNP)|2|[Burkhardt et al](papers/burkhardtClinicalRelevanceMolecular2022b)[@burkhardtClinicalRelevanceMolecular2022b]|| |
|
| 56 | -|[AGO4](AGO4)|2|[Burkhardt et al](papers/burkhardtClinicalRelevanceMolecular2022b)[@burkhardtClinicalRelevanceMolecular2022b]|| |
|
| 57 | -|[ARHGEF1](ARHGEF1)|2|[Muppidi et al](papers/muppidiLossSignalingGa132014b)[@muppidiLossSignalingGa132014b]|| |
|
| 58 | -|[BACH2](BACH2)|2|[Grande et al](papers/grandeGenomewideDiscoverySomatic2019)[@grandeGenomewideDiscoverySomatic2019]|| |
|
| 59 | -|[BCL2](BCL2)|2|[Burkhardt et al](papers/burkhardtClinicalRelevanceMolecular2022b)[@burkhardtClinicalRelevanceMolecular2022b]|[@morinFrequentMutationHistonemodifying2011; @tanakaFrequentIncidenceSomatic1992; @sarkozyMutationalLandscapeGray2021a]| |
|
| 60 | -|[BCL6](BCL6)|2|[Love et al](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|[@morinFrequentMutationHistonemodifying2011]| |
|
| 61 | -|[BTG1](BTG1)|2|[Burkhardt et al](papers/burkhardtClinicalRelevanceMolecular2022b)[@burkhardtClinicalRelevanceMolecular2022b]|[@morinFrequentMutationHistonemodifying2011; @sarkozyMutationalLandscapeGray2021a]| |
|
| 62 | -|[C16orf48](C16orf48)|2|[Schmitz et al](papers/schmitzBurkittLymphomaPathogenesis2012)[@schmitzBurkittLymphomaPathogenesis2012]|| |
|
| 63 | -|[CARD4](CARD4)|2|[Love et al](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|| |
|
| 64 | -|[CCNF](CCNF)|2|[Abate et al](papers/abateDistinctViralMutational2015a)[@abateDistinctViralMutational2015a]|[@zhangGeneticHeterogeneityDiffuse2013]| |
|
| 65 | -|[CD79A](CD79A)|2|[Burkhardt et al](papers/burkhardtClinicalRelevanceMolecular2022b)[@burkhardtClinicalRelevanceMolecular2022b]|[@rossiCodingGenomeSplenic2012c]| |
|
| 66 | -|[CD83](CD83)|2|[Panea et al](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|[@russler-germainMutationsAssociatedProgression2023b; @dunsCharacterizationDLBCLPMBL2021b; @morinMutationalStructuralAnalysis2013]| |
|
| 67 | -|[CDC73](CDC73)|2|[Love et al](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|[@reddyGeneticFunctionalDrivers2017]| |
|
| 68 | -|[CDKN2A](CDKN2A)|2|[Grande et al](papers/grandeGenomewideDiscoverySomatic2019)[@grandeGenomewideDiscoverySomatic2019]|[@spinaGeneticsNodalMarginal2016b; @morinMutationalStructuralAnalysis2013]| |
|
| 69 | -|[CDKN2C](CDKN2C)|2|[Thomas et al](papers/thomasGeneticSubgroupsInform2023)[@thomasGeneticSubgroupsInform2023]|| |
|
| 70 | -|[CHD4](CHD4)|2|[Burkhardt et al](papers/burkhardtClinicalRelevanceMolecular2022b)[@burkhardtClinicalRelevanceMolecular2022b]|| |
|
| 71 | -|[CPXM2](CPXM2)|2|[Burkhardt et al](papers/burkhardtClinicalRelevanceMolecular2022b)[@burkhardtClinicalRelevanceMolecular2022b]|| |
|
| 72 | -|[CREBBP](CREBBP)|2|[Love et al](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|[@parryWholeExomeSequencing2013; @pasqualucciInactivatingMutationsAcetyltransferase2011a; @dunsCharacterizationDLBCLPMBL2021b]| |
|
| 73 | -|[CXCR4](CXCR4)|2|[Panea et al](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|[@krysiakRecurrentSomaticMutations2017b; @khodabakhshiRecurrentTargetsAberrant2012]| |
|
| 74 | -|[DHCR7](DHCR7)|2|[Schmitz et al](papers/schmitzBurkittLymphomaPathogenesis2012)[@schmitzBurkittLymphomaPathogenesis2012]|| |
|
| 75 | -|[E2F2](E2F2)|2|[Burkhardt et al](papers/burkhardtClinicalRelevanceMolecular2022b)[@burkhardtClinicalRelevanceMolecular2022b]|| |
|
| 76 | -|[EBF1](EBF1)|2|[Thomas et al](papers/thomasGeneticSubgroupsInform2023)[@thomasGeneticSubgroupsInform2023]|[@reichelFlowSortingExome2015a; @bohleRoleEarlyBcell2013]| |
|
| 77 | -|[EDNRB](EDNRB)|2|[Burkhardt et al](papers/burkhardtClinicalRelevanceMolecular2022b)[@burkhardtClinicalRelevanceMolecular2022b]|| |
|
| 78 | -|[EHD1](EHD1)|2|[Thomas et al](papers/thomasGeneticSubgroupsInform2023)[@thomasGeneticSubgroupsInform2023]|| |
|
| 79 | -|[ELP2](ELP2)|2|[Schmitz et al](papers/schmitzBurkittLymphomaPathogenesis2012)[@schmitzBurkittLymphomaPathogenesis2012]|| |
|
| 80 | -|[ERAP1](ERAP1)|2|[Burkhardt et al](papers/burkhardtClinicalRelevanceMolecular2022b)[@burkhardtClinicalRelevanceMolecular2022b]|| |
|
| 81 | -|[EXOSC6](EXOSC6)|2|[Schmitz et al](papers/schmitzBurkittLymphomaPathogenesis2012)[@schmitzBurkittLymphomaPathogenesis2012]|| |
|
| 82 | -|[EZH2](EZH2)|2|[Love et al](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|[@morinSomaticMutationsAltering2010a; @mottokIntegrativeGenomicAnalysis2019b]| |
|
| 83 | -|[FLYWCH1](FLYWCH1)|2|[Schmitz et al](papers/schmitzBurkittLymphomaPathogenesis2012)[@schmitzBurkittLymphomaPathogenesis2012]|| |
|
| 84 | -|[GGTLA4](GGTLA4)|2|[Love et al](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|| |
|
| 85 | -|[GTSE1](GTSE1)|2|[Schmitz et al](papers/schmitzBurkittLymphomaPathogenesis2012)[@schmitzBurkittLymphomaPathogenesis2012]|| |
|
| 86 | -|[HIST1H1E](HIST1H1E)|2|[Grande et al](papers/grandeGenomewideDiscoverySomatic2019)[@grandeGenomewideDiscoverySomatic2019]|[@lohrDiscoveryPrioritizationSomatic2012a; @krysiakRecurrentSomaticMutations2017b; @reichelFlowSortingExome2015a]| |
|
| 87 | -|[HIST1H3D](HIST1H3D)|2|[Panea et al](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|| |
|
| 88 | -|[HIST1H3I](HIST1H3I)|2|[Panea et al](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|[@krysiakRecurrentSomaticMutations2017b]| |
|
| 89 | -|[HIST1H4J](HIST1H4J)|2|[Panea et al](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|[@mottokIntegrativeGenomicAnalysis2019b]| |
|
| 90 | -|[HLA-DQB1](HLA-DQB1)|2|[Burkhardt et al](papers/burkhardtClinicalRelevanceMolecular2022b)[@burkhardtClinicalRelevanceMolecular2022b]|| |
|
| 91 | -|[IGLL5](IGLL5)|2|[Panea et al](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|[@deschGenotypingCirculatingTumor2020; @russler-germainMutationsAssociatedProgression2023b; @chapuyMolecularSubtypesDiffuse2018b]| |
|
| 92 | -|[IKZF3](IKZF3)|2|[Panea et al](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|[@morinMutationalStructuralAnalysis2013]| |
|
| 93 | -|[IRF8](IRF8)|2|[Panea et al](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|[@mottokIntegrativeGenomicAnalysis2019b; @morinFrequentMutationHistonemodifying2011]| |
|
| 94 | -|[KANK2](KANK2)|2|[Schmitz et al](papers/schmitzBurkittLymphomaPathogenesis2012)[@schmitzBurkittLymphomaPathogenesis2012]|| |
|
| 95 | -|[KLHL26](KLHL26)|2|[Burkhardt et al](papers/burkhardtClinicalRelevanceMolecular2022b)[@burkhardtClinicalRelevanceMolecular2022b]|| |
|
| 96 | -|[KMT2C](KMT2C)|2|[Zhou et al](papers/zhouSporadicEndemicBurkitt2019)[@zhouSporadicEndemicBurkitt2019]|[@zhangGenomicLandscapeMantle2014; @sarkozyMutationalLandscapeGray2021a; @zhangGeneticHeterogeneityDiffuse2013]| |
|
| 97 | -|[MCL1](MCL1)|2|[Panea et al](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|[@dunsCharacterizationDLBCLPMBL2021b; @reddyGeneticFunctionalDrivers2017]| |
|
| 98 | -|[MIR142](MIR142)|2|[Grande et al](papers/grandeGenomewideDiscoverySomatic2019)[@grandeGenomewideDiscoverySomatic2019]|[@kwanhianMicroRNA142Mutated202012b]| |
|
| 99 | -|[MKI67](MKI67)|2|[Schmitz et al](papers/schmitzBurkittLymphomaPathogenesis2012)[@schmitzBurkittLymphomaPathogenesis2012]|[@russler-germainMutationsAssociatedProgression2023b]| |
|
| 100 | -|[MYO18A](MYO18A)|2|[Schmitz et al](papers/schmitzBurkittLymphomaPathogenesis2012)[@schmitzBurkittLymphomaPathogenesis2012]|| |
|
| 101 | -|[NBEAL1](NBEAL1)|2|[Love et al](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|| |
|
| 102 | -|[NCOR2](NCOR2)|2|[Schmitz et al](papers/schmitzBurkittLymphomaPathogenesis2012)[@schmitzBurkittLymphomaPathogenesis2012]|[@spinaGeneticsNodalMarginal2016b; @sarkozyMutationalLandscapeGray2021a]| |
|
| 103 | -|[NOA1](NOA1)|2|[Burkhardt et al](papers/burkhardtClinicalRelevanceMolecular2022b)[@burkhardtClinicalRelevanceMolecular2022b]|| |
|
| 104 | -|[P2RY2](P2RY2)|2|[Love et al](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|| |
|
| 105 | -|[PCBP1](PCBP1)|2|[Schmitz et al](papers/schmitzBurkittLymphomaPathogenesis2012)[@schmitzBurkittLymphomaPathogenesis2012]|| |
|
| 106 | -|[PDCD11](PDCD11)|2|[Schmitz et al](papers/schmitzBurkittLymphomaPathogenesis2012)[@schmitzBurkittLymphomaPathogenesis2012]|| |
|
| 107 | -|[PIM1](PIM1)|2|[Burkhardt et al](papers/burkhardtClinicalRelevanceMolecular2022b)[@burkhardtClinicalRelevanceMolecular2022b]|[@pasqualucciHypermutationMultipleProtooncogenes2001a; @dunsCharacterizationDLBCLPMBL2021b]| |
|
| 108 | -|[PLCG2](PLCG2)|2|[Panea et al](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|[@fanComprehensiveCharacterizationDriver2020b]| |
|
| 109 | -|[PPP6R2](PPP6R2)|2|[Burkhardt et al](papers/burkhardtClinicalRelevanceMolecular2022b)[@burkhardtClinicalRelevanceMolecular2022b]|| |
|
| 110 | -|[PREX1](PREX1)|2|[Burkhardt et al](papers/burkhardtClinicalRelevanceMolecular2022b)[@burkhardtClinicalRelevanceMolecular2022b]|| |
|
| 111 | -|[RANBP6](RANBP6)|2|[Love et al](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|| |
|
| 112 | -|[REV3L](REV3L)|2|[Burkhardt et al](papers/burkhardtClinicalRelevanceMolecular2022b)[@burkhardtClinicalRelevanceMolecular2022b]|| |
|
| 113 | -|[RNF144B](RNF144B)|2|[Panea et al](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|| |
|
| 114 | -|[RPL10](RPL10)|2|[Burkhardt et al](papers/burkhardtClinicalRelevanceMolecular2022b)[@burkhardtClinicalRelevanceMolecular2022b]|| |
|
| 115 | -|[S1PR2](S1PR2)|2|[Muppidi et al](papers/muppidiLossSignalingGa132014b)[@muppidiLossSignalingGa132014b]|[@morinFrequentMutationHistonemodifying2011]| |
|
| 116 | -|[SAL3](SAL3)|2|[Burkhardt et al](papers/burkhardtClinicalRelevanceMolecular2022b)[@burkhardtClinicalRelevanceMolecular2022b]|| |
|
| 117 | -|[TET2](TET2)|2|[Thomas et al](papers/thomasGeneticSubgroupsInform2023)[@thomasGeneticSubgroupsInform2023]|[@albuquerqueEnhancingKnowledgeDiscovery2017a]| |
|
| 118 | -|[TOP2A](TOP2A)|2|[Schmitz et al](papers/schmitzBurkittLymphomaPathogenesis2012)[@schmitzBurkittLymphomaPathogenesis2012]|| |
|
| 119 | -|[TTN](TTN)|2|[Burkhardt et al](papers/burkhardtClinicalRelevanceMolecular2022b)[@burkhardtClinicalRelevanceMolecular2022b]|| |
|
| 120 | -|[VWA7](VWA7)|2|[Burkhardt et al](papers/burkhardtClinicalRelevanceMolecular2022b)[@burkhardtClinicalRelevanceMolecular2022b]|| |
|
| 121 | -|[WDR90](WDR90)|2|[Schmitz et al](papers/schmitzBurkittLymphomaPathogenesis2012)[@schmitzBurkittLymphomaPathogenesis2012]|| |
|
| 122 | -|[WHAMM](WHAMM)|2|[Schmitz et al](papers/schmitzBurkittLymphomaPathogenesis2012)[@schmitzBurkittLymphomaPathogenesis2012]|| |
|
| 123 | -|[WNK2](WNK2)|2|[Panea et al](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|| |
|
| 124 | -|[YY1AP1](YY1AP1)|2|[Schmitz et al](papers/schmitzBurkittLymphomaPathogenesis2012)[@schmitzBurkittLymphomaPathogenesis2012]|| |
|
| 125 | -|[ZAN](ZAN)|2|[Burkhardt et al](papers/burkhardtClinicalRelevanceMolecular2022b)[@burkhardtClinicalRelevanceMolecular2022b]|| |
|
| 126 | -|[ZBTB7A](ZBTB7A)|2|[Burkhardt et al](papers/burkhardtClinicalRelevanceMolecular2022b)[@burkhardtClinicalRelevanceMolecular2022b]|[@reddyGeneticFunctionalDrivers2017]| |
|
| 127 | -|[ZFP36L1](ZFP36L1)|2|[Panea et al](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|[@reichelFlowSortingExome2015a; @morinFrequentMutationHistonemodifying2011]| |
|
| 128 | -|[ZNF85](ZNF85)|2|[Burkhardt et al](papers/burkhardtClinicalRelevanceMolecular2022b)[@burkhardtClinicalRelevanceMolecular2022b]|| |
|
| 52 | +|Gene|Summary| First BL study | Other entities | QC result | |
|
| 53 | +|:-:|:-:|:-:|:-|:-| |
|
| 54 | +|[ADAMTS5](ADAMTS5)|Tier 2 GE[@burkhardtClinicalRelevanceMolecular2022b]|[Burkhardt et al](papers/burkhardtClinicalRelevanceMolecular2022b)||| |
|
| 55 | +|[ADNP](ADNP)|Tier 2 GE[@burkhardtClinicalRelevanceMolecular2022b]|[Burkhardt et al](papers/burkhardtClinicalRelevanceMolecular2022b)||| |
|
| 56 | +|[AGO4](AGO4)|Tier 2 GE[@burkhardtClinicalRelevanceMolecular2022b]|[Burkhardt et al](papers/burkhardtClinicalRelevanceMolecular2022b)||| |
|
| 57 | +|[ARHGEF1](ARHGEF1)|Tier 2 GE[@muppidiLossSignalingGa132014b]|[Muppidi et al](papers/muppidiLossSignalingGa132014b)||| |
|
| 58 | +|[BACH2](BACH2)|Tier 2 GE[@grandeGenomewideDiscoverySomatic2019]|[Grande et al](papers/grandeGenomewideDiscoverySomatic2019)||| |
|
| 59 | +|[BCL2](BCL2)|Tier 2 GE[@burkhardtClinicalRelevanceMolecular2022b], FE[@balSuperenhancerHypermutationAlters2022]|[Burkhardt et al](papers/burkhardtClinicalRelevanceMolecular2022b)|[@morinFrequentMutationHistonemodifying2011; @sarkozyMutationalLandscapeGray2021a; @tanakaFrequentIncidenceSomatic1992]|| |
|
| 60 | +|[BCL6](BCL6)|Tier 2 GE[@loveGeneticLandscapeMutations2012], FE[@balSuperenhancerHypermutationAlters2022]|[Love et al](papers/loveGeneticLandscapeMutations2012)|[@morinFrequentMutationHistonemodifying2011]|PASS| |
|
| 61 | +|[BTG1](BTG1)|Tier 2 GE[@burkhardtClinicalRelevanceMolecular2022b], FE[@mlynarczykBTG1MutationYields2023b]|[Burkhardt et al](papers/burkhardtClinicalRelevanceMolecular2022b)|[@morinFrequentMutationHistonemodifying2011; @sarkozyMutationalLandscapeGray2021a]|| |
|
| 62 | +|[C16orf48](C16orf48)|Tier 2 GE[@schmitzBurkittLymphomaPathogenesis2012]|[Schmitz et al](papers/schmitzBurkittLymphomaPathogenesis2012)||| |
|
| 63 | +|[CARD4](CARD4)|Tier 2 GE[@loveGeneticLandscapeMutations2012]|[Love et al](papers/loveGeneticLandscapeMutations2012)||PASS| |
|
| 64 | +|[CCNF](CCNF)|Tier 2 GE[@abateDistinctViralMutational2015a]|[Abate et al](papers/abateDistinctViralMutational2015a)|[@zhangGeneticHeterogeneityDiffuse2013]|| |
|
| 65 | +|[CD79A](CD79A)|Tier 2 GE[@burkhardtClinicalRelevanceMolecular2022b]|[Burkhardt et al](papers/burkhardtClinicalRelevanceMolecular2022b)|[@rossiCodingGenomeSplenic2012c]|| |
|
| 66 | +|[CD83](CD83)|Tier 2 GE[@paneaWholeGenomeLandscape2019]|[Panea et al](papers/paneaWholeGenomeLandscape2019)|[@dunsCharacterizationDLBCLPMBL2021b; @morinMutationalStructuralAnalysis2013; @russler-germainMutationsAssociatedProgression2023b]|PASS| |
|
| 67 | +|[CDC73](CDC73)|Tier 2 GE[@loveGeneticLandscapeMutations2012]|[Love et al](papers/loveGeneticLandscapeMutations2012)|[@reddyGeneticFunctionalDrivers2017]|PASS| |
|
| 68 | +|[CDKN2A](CDKN2A)|Tier 2 GE[@grandeGenomewideDiscoverySomatic2019], CE[@jardinDiffuseLargeBcell2010a]|[Grande et al](papers/grandeGenomewideDiscoverySomatic2019)|[@morinMutationalStructuralAnalysis2013; @spinaGeneticsNodalMarginal2016b]|| |
|
| 69 | +|[CDKN2C](CDKN2C)|Tier 2 GE[@thomasGeneticSubgroupsInform2023]|[Thomas et al](papers/thomasGeneticSubgroupsInform2023)||| |
|
| 70 | +|[CHD4](CHD4)|Tier 2 GE[@burkhardtClinicalRelevanceMolecular2022b]|[Burkhardt et al](papers/burkhardtClinicalRelevanceMolecular2022b)||| |
|
| 71 | +|[CPXM2](CPXM2)|Tier 2 GE[@burkhardtClinicalRelevanceMolecular2022b]|[Burkhardt et al](papers/burkhardtClinicalRelevanceMolecular2022b)||| |
|
| 72 | +|[CREBBP](CREBBP)|Tier 2 GE[@loveGeneticLandscapeMutations2012], FE[@pasqualucciInactivatingMutationsAcetyltransferase2011a]|[Love et al](papers/loveGeneticLandscapeMutations2012)|[@dunsCharacterizationDLBCLPMBL2021b; @parryWholeExomeSequencing2013; @pasqualucciInactivatingMutationsAcetyltransferase2011a]|PASS| |
|
| 73 | +|[CXCR4](CXCR4)|Tier 2 GE[@paneaWholeGenomeLandscape2019]|[Panea et al](papers/paneaWholeGenomeLandscape2019)|[@khodabakhshiRecurrentTargetsAberrant2012; @krysiakRecurrentSomaticMutations2017b]|PASS| |
|
| 74 | +|[DHCR7](DHCR7)|Tier 2 GE[@schmitzBurkittLymphomaPathogenesis2012]|[Schmitz et al](papers/schmitzBurkittLymphomaPathogenesis2012)||| |
|
| 75 | +|[E2F2](E2F2)|Tier 2 GE[@burkhardtClinicalRelevanceMolecular2022b]|[Burkhardt et al](papers/burkhardtClinicalRelevanceMolecular2022b)||| |
|
| 76 | +|[EBF1](EBF1)|Tier 2 GE[@thomasGeneticSubgroupsInform2023]|[Thomas et al](papers/thomasGeneticSubgroupsInform2023)|[@bohleRoleEarlyBcell2013; @reichelFlowSortingExome2015a]|| |
|
| 77 | +|[EDNRB](EDNRB)|Tier 2 GE[@burkhardtClinicalRelevanceMolecular2022b]|[Burkhardt et al](papers/burkhardtClinicalRelevanceMolecular2022b)||| |
|
| 78 | +|[EHD1](EHD1)|Tier 2 GE[@thomasGeneticSubgroupsInform2023]|[Thomas et al](papers/thomasGeneticSubgroupsInform2023)||| |
|
| 79 | +|[ELP2](ELP2)|Tier 2 GE[@schmitzBurkittLymphomaPathogenesis2012]|[Schmitz et al](papers/schmitzBurkittLymphomaPathogenesis2012)||| |
|
| 80 | +|[ERAP1](ERAP1)|Tier 2 GE[@burkhardtClinicalRelevanceMolecular2022b]|[Burkhardt et al](papers/burkhardtClinicalRelevanceMolecular2022b)||| |
|
| 81 | +|[EXOSC6](EXOSC6)|Tier 2 GE[@schmitzBurkittLymphomaPathogenesis2012]|[Schmitz et al](papers/schmitzBurkittLymphomaPathogenesis2012)||| |
|
| 82 | +|[EZH2](EZH2)|Tier 2 GE[@loveGeneticLandscapeMutations2012], FE[@yapSomaticMutationsEZH22011b]|[Love et al](papers/loveGeneticLandscapeMutations2012)|[@morinSomaticMutationsAltering2010a; @mottokIntegrativeGenomicAnalysis2019b]|PASS| |
|
| 83 | +|[FLYWCH1](FLYWCH1)|Tier 2 GE[@schmitzBurkittLymphomaPathogenesis2012]|[Schmitz et al](papers/schmitzBurkittLymphomaPathogenesis2012)||| |
|
| 84 | +|[GGTLA4](GGTLA4)|Tier 2 GE[@loveGeneticLandscapeMutations2012]|[Love et al](papers/loveGeneticLandscapeMutations2012)||PASS| |
|
| 85 | +|[GTSE1](GTSE1)|Tier 2 GE[@schmitzBurkittLymphomaPathogenesis2012]|[Schmitz et al](papers/schmitzBurkittLymphomaPathogenesis2012)||| |
|
| 86 | +|[HIST1H1E](HIST1H1E)|Tier 2 GE[@grandeGenomewideDiscoverySomatic2019]|[Grande et al](papers/grandeGenomewideDiscoverySomatic2019)|[@krysiakRecurrentSomaticMutations2017b; @lohrDiscoveryPrioritizationSomatic2012a; @reichelFlowSortingExome2015a]|| |
|
| 87 | +|[HIST1H3D](HIST1H3D)|Tier 2 GE[@paneaWholeGenomeLandscape2019]|[Panea et al](papers/paneaWholeGenomeLandscape2019)||PASS| |
|
| 88 | +|[HIST1H3I](HIST1H3I)|Tier 2 GE[@paneaWholeGenomeLandscape2019]|[Panea et al](papers/paneaWholeGenomeLandscape2019)|[@krysiakRecurrentSomaticMutations2017b]|PASS| |
|
| 89 | +|[HIST1H4J](HIST1H4J)|Tier 2 GE[@paneaWholeGenomeLandscape2019]|[Panea et al](papers/paneaWholeGenomeLandscape2019)|[@mottokIntegrativeGenomicAnalysis2019b]|PASS| |
|
| 90 | +|[HLA-DQB1](HLA-DQB1)|Tier 2 GE[@burkhardtClinicalRelevanceMolecular2022b]|[Burkhardt et al](papers/burkhardtClinicalRelevanceMolecular2022b)||| |
|
| 91 | +|[IGLL5](IGLL5)|Tier 2 GE[@paneaWholeGenomeLandscape2019]|[Panea et al](papers/paneaWholeGenomeLandscape2019)|[@chapuyMolecularSubtypesDiffuse2018b; @deschGenotypingCirculatingTumor2020; @russler-germainMutationsAssociatedProgression2023b]|PASS| |
|
| 92 | +|[IKZF3](IKZF3)|Tier 2 GE[@paneaWholeGenomeLandscape2019]|[Panea et al](papers/paneaWholeGenomeLandscape2019)|[@morinFrequentMutationHistonemodifying2011]|PASS| |
|
| 93 | +|[IRF8](IRF8)|Tier 2 GE[@paneaWholeGenomeLandscape2019]|[Panea et al](papers/paneaWholeGenomeLandscape2019)|[@morinFrequentMutationHistonemodifying2011; @mottokIntegrativeGenomicAnalysis2019b]|PASS| |
|
| 94 | +|[KANK2](KANK2)|Tier 2 GE[@schmitzBurkittLymphomaPathogenesis2012]|[Schmitz et al](papers/schmitzBurkittLymphomaPathogenesis2012)||| |
|
| 95 | +|[KLHL26](KLHL26)|Tier 2 GE[@burkhardtClinicalRelevanceMolecular2022b]|[Burkhardt et al](papers/burkhardtClinicalRelevanceMolecular2022b)||| |
|
| 96 | +|[KMT2C](KMT2C)|Tier 2 GE[@zhouSporadicEndemicBurkitt2019]|[Zhou et al](papers/zhouSporadicEndemicBurkitt2019)|[@sarkozyMutationalLandscapeGray2021a; @zhangGeneticHeterogeneityDiffuse2013; @zhangGenomicLandscapeMantle2014]|| |
|
| 97 | +|[MCL1](MCL1)|Tier 2 GE[@paneaWholeGenomeLandscape2019]|[Panea et al](papers/paneaWholeGenomeLandscape2019)|[@dunsCharacterizationDLBCLPMBL2021b; @reddyGeneticFunctionalDrivers2017]|PASS| |
|
| 98 | +|[MIR142](MIR142)|Tier 2 GE[@grandeGenomewideDiscoverySomatic2019]|[Grande et al](papers/grandeGenomewideDiscoverySomatic2019)|[@kwanhianMicroRNA142Mutated202012b]|| |
|
| 99 | +|[MKI67](MKI67)|Tier 2 GE[@schmitzBurkittLymphomaPathogenesis2012]|[Schmitz et al](papers/schmitzBurkittLymphomaPathogenesis2012)|[@russler-germainMutationsAssociatedProgression2023b]|| |
|
| 100 | +|[MYO18A](MYO18A)|Tier 2 GE[@schmitzBurkittLymphomaPathogenesis2012]|[Schmitz et al](papers/schmitzBurkittLymphomaPathogenesis2012)||| |
|
| 101 | +|[NBEAL1](NBEAL1)|Tier 2 GE[@loveGeneticLandscapeMutations2012]|[Love et al](papers/loveGeneticLandscapeMutations2012)||PASS| |
|
| 102 | +|[NCOR2](NCOR2)|Tier 2 GE[@schmitzBurkittLymphomaPathogenesis2012]|[Schmitz et al](papers/schmitzBurkittLymphomaPathogenesis2012)|[@sarkozyMutationalLandscapeGray2021a; @spinaGeneticsNodalMarginal2016b]|| |
|
| 103 | +|[NOA1](NOA1)|Tier 2 GE[@burkhardtClinicalRelevanceMolecular2022b]|[Burkhardt et al](papers/burkhardtClinicalRelevanceMolecular2022b)||| |
|
| 104 | +|[P2RY2](P2RY2)|Tier 2 GE[@loveGeneticLandscapeMutations2012]|[Love et al](papers/loveGeneticLandscapeMutations2012)||PASS| |
|
| 105 | +|[PCBP1](PCBP1)|Tier 2 GE[@schmitzBurkittLymphomaPathogenesis2012]|[Schmitz et al](papers/schmitzBurkittLymphomaPathogenesis2012)||| |
|
| 106 | +|[PDCD11](PDCD11)|Tier 2 GE[@schmitzBurkittLymphomaPathogenesis2012]|[Schmitz et al](papers/schmitzBurkittLymphomaPathogenesis2012)||| |
|
| 107 | +|[PIM1](PIM1)|Tier 2 GE[@burkhardtClinicalRelevanceMolecular2022b]|[Burkhardt et al](papers/burkhardtClinicalRelevanceMolecular2022b)|[@dunsCharacterizationDLBCLPMBL2021b; @pasqualucciHypermutationMultipleProtooncogenes2001a]|| |
|
| 108 | +|[PLCG2](PLCG2)|Tier 2 GE[@paneaWholeGenomeLandscape2019]|[Panea et al](papers/paneaWholeGenomeLandscape2019)|[@fanComprehensiveCharacterizationDriver2020b]|PASS| |
|
| 109 | +|[PPP6R2](PPP6R2)|Tier 2 GE[@burkhardtClinicalRelevanceMolecular2022b]|[Burkhardt et al](papers/burkhardtClinicalRelevanceMolecular2022b)||| |
|
| 110 | +|[PREX1](PREX1)|Tier 2 GE[@burkhardtClinicalRelevanceMolecular2022b]|[Burkhardt et al](papers/burkhardtClinicalRelevanceMolecular2022b)||| |
|
| 111 | +|[RANBP6](RANBP6)|Tier 2 GE[@loveGeneticLandscapeMutations2012]|[Love et al](papers/loveGeneticLandscapeMutations2012)||PASS| |
|
| 112 | +|[REV3L](REV3L)|Tier 2 GE[@burkhardtClinicalRelevanceMolecular2022b]|[Burkhardt et al](papers/burkhardtClinicalRelevanceMolecular2022b)||| |
|
| 113 | +|[RNF144B](RNF144B)|Tier 2 GE[@paneaWholeGenomeLandscape2019]|[Panea et al](papers/paneaWholeGenomeLandscape2019)||PASS| |
|
| 114 | +|[RPL10](RPL10)|Tier 2 GE[@burkhardtClinicalRelevanceMolecular2022b]|[Burkhardt et al](papers/burkhardtClinicalRelevanceMolecular2022b)||| |
|
| 115 | +|[S1PR2](S1PR2)|Tier 2 GE[@muppidiLossSignalingGa132014b]|[Muppidi et al](papers/muppidiLossSignalingGa132014b)|[@morinFrequentMutationHistonemodifying2011]|| |
|
| 116 | +|[SAL3](SAL3)|Tier 2 GE[@burkhardtClinicalRelevanceMolecular2022b]|[Burkhardt et al](papers/burkhardtClinicalRelevanceMolecular2022b)||| |
|
| 117 | +|[TET2](TET2)|Tier 2 GE[@thomasGeneticSubgroupsInform2023]|[Thomas et al](papers/thomasGeneticSubgroupsInform2023)|[@albuquerqueEnhancingKnowledgeDiscovery2017a]|| |
|
| 118 | +|[TOP2A](TOP2A)|Tier 2 GE[@schmitzBurkittLymphomaPathogenesis2012]|[Schmitz et al](papers/schmitzBurkittLymphomaPathogenesis2012)||| |
|
| 119 | +|[TTN](TTN)|Tier 2 GE[@burkhardtClinicalRelevanceMolecular2022b]|[Burkhardt et al](papers/burkhardtClinicalRelevanceMolecular2022b)||| |
|
| 120 | +|[VWA7](VWA7)|Tier 2 GE[@burkhardtClinicalRelevanceMolecular2022b]|[Burkhardt et al](papers/burkhardtClinicalRelevanceMolecular2022b)||| |
|
| 121 | +|[WDR90](WDR90)|Tier 2 GE[@schmitzBurkittLymphomaPathogenesis2012]|[Schmitz et al](papers/schmitzBurkittLymphomaPathogenesis2012)||| |
|
| 122 | +|[WHAMM](WHAMM)|Tier 2 GE[@schmitzBurkittLymphomaPathogenesis2012]|[Schmitz et al](papers/schmitzBurkittLymphomaPathogenesis2012)||| |
|
| 123 | +|[WNK2](WNK2)|Tier 2 GE[@paneaWholeGenomeLandscape2019]|[Panea et al](papers/paneaWholeGenomeLandscape2019)||PASS| |
|
| 124 | +|[YY1AP1](YY1AP1)|Tier 2 GE[@schmitzBurkittLymphomaPathogenesis2012]|[Schmitz et al](papers/schmitzBurkittLymphomaPathogenesis2012)||| |
|
| 125 | +|[ZAN](ZAN)|Tier 2 GE[@burkhardtClinicalRelevanceMolecular2022b]|[Burkhardt et al](papers/burkhardtClinicalRelevanceMolecular2022b)||| |
|
| 126 | +|[ZBTB7A](ZBTB7A)|Tier 2 GE[@burkhardtClinicalRelevanceMolecular2022b]|[Burkhardt et al](papers/burkhardtClinicalRelevanceMolecular2022b)|[@reddyGeneticFunctionalDrivers2017]|| |
|
| 127 | +|[ZFP36L1](ZFP36L1)|Tier 2 GE[@paneaWholeGenomeLandscape2019]|[Panea et al](papers/paneaWholeGenomeLandscape2019)|[@morinFrequentMutationHistonemodifying2011; @reichelFlowSortingExome2015a]|PASS| |
|
| 128 | +|[ZNF85](ZNF85)|Tier 2 GE[@burkhardtClinicalRelevanceMolecular2022b]|[Burkhardt et al](papers/burkhardtClinicalRelevanceMolecular2022b)||| |
|
| 129 | 129 | |
| 130 | 130 | ## Tier 3 BL genes |
| 131 | 131 | |
| 132 | 132 | ### *70 total* |
| 133 | 133 | |
| 134 | -|Gene|Tier| First BL evidence | Other entities | |
|
| 135 | -|:-:|:-:|:--|:-| |
|
| 136 | -|[ACAD9](ACAD9)|3|[Love et al](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|| |
|
| 137 | -|[ACE](ACE)|3|[Love et al](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|[@zhangGeneticHeterogeneityDiffuse2013]| |
|
| 138 | -|[ALPK2](ALPK2)|3|[Panea et al](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|| |
|
| 139 | -|[ATP2C2](ATP2C2)|3|[Love et al](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|| |
|
| 140 | -|[BRAF](BRAF)|3|[Love et al](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|[@tiacciBRAFMutationsHairycell2011a]| |
|
| 141 | -|[BRD4](BRD4)|3|[Love et al](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|[@zhangGeneticHeterogeneityDiffuse2013]| |
|
| 142 | -|[BTG2](BTG2)|3|[Love et al](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|[@morinFrequentMutationHistonemodifying2011]| |
|
| 143 | -|[C6orf27](C6orf27)|3|[Love et al](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|| |
|
| 144 | -|[CAD](CAD)|3|[Love et al](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|[@zhangGeneticHeterogeneityDiffuse2013]| |
|
| 145 | -|[CCT6B](CCT6B)|3|[Love et al](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|| |
|
| 146 | -|[CD79B](CD79B)|3|[Panea et al](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|[@morinFrequentMutationHistonemodifying2011]| |
|
| 147 | -|[CDH17](CDH17)|3|[Love et al](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|| |
|
| 148 | -|[COL4A2](COL4A2)|3|[Love et al](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|| |
|
| 149 | -|[CTCF](CTCF)|3|[Panea et al](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|| |
|
| 150 | -|[CYB5D1](CYB5D1)|3|[Love et al](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|| |
|
| 151 | -|[CYP4F22](CYP4F22)|3|[Love et al](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|| |
|
| 152 | -|[DLGAP1](DLGAP1)|3|[Love et al](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|[@zhangGeneticHeterogeneityDiffuse2013]| |
|
| 153 | -|[DNMT1](DNMT1)|3|[Panea et al](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|| |
|
| 154 | -|[DTX1](DTX1)|3|[Love et al](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|[@gomezUltraDeepSequencingReveals2023; @rossiCodingGenomeSplenic2012c; @zhangGeneticHeterogeneityDiffuse2013]| |
|
| 155 | -|[EIF2C4](EIF2C4)|3|[Love et al](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|| |
|
| 156 | -|[EML2](EML2)|3|[Love et al](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|| |
|
| 157 | -|[ENTPD3](ENTPD3)|3|[Love et al](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|| |
|
| 158 | -|[EPHB2](EPHB2)|3|[Love et al](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|| |
|
| 159 | -|[ETS1](ETS1)|3|[Panea et al](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|[@morinFrequentMutationHistonemodifying2011]| |
|
| 160 | -|[FAM129B](FAM129B)|3|[Love et al](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|| |
|
| 161 | -|[FGFR3](FGFR3)|3|[Love et al](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|| |
|
| 162 | -|[FTCD](FTCD)|3|[Love et al](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|| |
|
| 163 | -|[FZD3](FZD3)|3|[Panea et al](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|| |
|
| 164 | -|[GRIK5](GRIK5)|3|[Love et al](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|| |
|
| 165 | -|[HIST1H1C](HIST1H1C)|3|[Panea et al](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|[@morinFrequentMutationHistonemodifying2011]| |
|
| 166 | -|[HIST1H2AG](HIST1H2AG)|3|[Panea et al](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|[@krysiakRecurrentSomaticMutations2017b; @rossiCodingGenomeSplenic2012c; @morinMutationalStructuralAnalysis2013]| |
|
| 167 | -|[HIST1H2AM](HIST1H2AM)|3|[Panea et al](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|[@chapuyMolecularSubtypesDiffuse2018b; @krysiakRecurrentSomaticMutations2017b]| |
|
| 168 | -|[HIST1H2BK](HIST1H2BK)|3|[Panea et al](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|[@zhangGeneticHeterogeneityDiffuse2013; @rossiCodingGenomeSplenic2012c]| |
|
| 169 | -|[HIST1H3H](HIST1H3H)|3|[Panea et al](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|| |
|
| 170 | -|[HIST1H3J](HIST1H3J)|3|[Panea et al](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|| |
|
| 171 | -|[ICK](ICK)|3|[Love et al](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|| |
|
| 172 | -|[ITPR3](ITPR3)|3|[Love et al](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|[@tiacciPervasiveMutationsJAKSTAT2018b]| |
|
| 173 | -|[KCNK10](KCNK10)|3|[Panea et al](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|| |
|
| 174 | -|[KIFC3](KIFC3)|3|[Love et al](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|| |
|
| 175 | -|[MAP3K6](MAP3K6)|3|[Love et al](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|| |
|
| 176 | -|[MME](MME)|3|[Panea et al](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|| |
|
| 177 | -|[MTOR](MTOR)|3|[Panea et al](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|[@zhangGeneticHeterogeneityDiffuse2013]| |
|
| 178 | -|[MYH10](MYH10)|3|[Love et al](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|| |
|
| 179 | -|[NOTCH1](NOTCH1)|3|[Love et al](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|[@beaLandscapeSomaticMutations2013; @pasqualucciAnalysisCodingGenome2011; @rossiCodingGenomeSplenic2012c]| |
|
| 180 | -|[NRXN2](NRXN2)|3|[Love et al](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|[@zhangGeneticHeterogeneityDiffuse2013]| |
|
| 181 | -|[PABPC4L](PABPC4L)|3|[Panea et al](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|| |
|
| 182 | -|[PC](PC)|3|[Love et al](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|| |
|
| 183 | -|[PCDHA11](PCDHA11)|3|[Panea et al](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|| |
|
| 184 | -|[PDZRN3](PDZRN3)|3|[Panea et al](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|[@zhangGeneticHeterogeneityDiffuse2013]| |
|
| 185 | -|[PIK3R1](PIK3R1)|3|[Panea et al](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|[@zhangGeneticHeterogeneityDiffuse2013]| |
|
| 186 | -|[POLRMT](POLRMT)|3|[Love et al](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|| |
|
| 187 | -|[POR](POR)|3|[Love et al](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|| |
|
| 188 | -|[PRSS22](PRSS22)|3|[Love et al](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|| |
|
| 189 | -|[PTPRN](PTPRN)|3|[Love et al](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|| |
|
| 190 | -|[PXDNL](PXDNL)|3|[Panea et al](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|| |
|
| 191 | -|[RBP3](RBP3)|3|[Love et al](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|| |
|
| 192 | -|[RET](RET)|3|[Love et al](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|[@fanComprehensiveCharacterizationDriver2020b]| |
|
| 193 | -|[SALL3](SALL3)|3|[Love et al](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|[@zhangGenomicLandscapeMantle2014]| |
|
| 194 | -|[SAPS2](SAPS2)|3|[Love et al](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|| |
|
| 195 | -|[SBF1](SBF1)|3|[Love et al](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|| |
|
| 196 | -|[SF3B1](SF3B1)|3|[Love et al](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|[@reddyGeneticFunctionalDrivers2017]| |
|
| 197 | -|[SHANK1](SHANK1)|3|[Love et al](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|| |
|
| 198 | -|[SLC29A2](SLC29A2)|3|[Love et al](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|| |
|
| 199 | -|[SNTB2](SNTB2)|3|[Panea et al](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|| |
|
| 200 | -|[SYNGAP1](SYNGAP1)|3|[Love et al](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|| |
|
| 201 | -|[TBC1D9B](TBC1D9B)|3|[Love et al](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|| |
|
| 202 | -|[TIGD6](TIGD6)|3|[Love et al](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|| |
|
| 203 | -|[TPST2](TPST2)|3|[Love et al](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|| |
|
| 204 | -|[WDR7](WDR7)|3|[Panea et al](papers/paneaWholeGenomeLandscape2019)[@paneaWholeGenomeLandscape2019]|| |
|
| 205 | -|[ZNF229](ZNF229)|3|[Love et al](papers/loveGeneticLandscapeMutations2012)[@loveGeneticLandscapeMutations2012]|| |
|
| 134 | +|Gene|Summary| First BL study | Other entities | QC result | |
|
| 135 | +|:-:|:-:|:-:|:-|:-| |
|
| 136 | +|[ACAD9](ACAD9)|Tier 3 GE[@loveGeneticLandscapeMutations2012]|[Love et al](papers/loveGeneticLandscapeMutations2012)||FAIL| |
|
| 137 | +|[ACE](ACE)|Tier 3 GE[@loveGeneticLandscapeMutations2012]|[Love et al](papers/loveGeneticLandscapeMutations2012)|[@zhangGeneticHeterogeneityDiffuse2013]|FAIL| |
|
| 138 | +|[ALPK2](ALPK2)|Tier 3 GE[@paneaWholeGenomeLandscape2019]|[Panea et al](papers/paneaWholeGenomeLandscape2019)||FAIL| |
|
| 139 | +|[ATP2C2](ATP2C2)|Tier 3 GE[@loveGeneticLandscapeMutations2012]|[Love et al](papers/loveGeneticLandscapeMutations2012)||FAIL| |
|
| 140 | +|[BRAF](BRAF)|Tier 3 GE[@loveGeneticLandscapeMutations2012]|[Love et al](papers/loveGeneticLandscapeMutations2012)|[@tiacciBRAFMutationsHairycell2011a]|FAIL| |
|
| 141 | +|[BRD4](BRD4)|Tier 3 GE[@loveGeneticLandscapeMutations2012]|[Love et al](papers/loveGeneticLandscapeMutations2012)|[@zhangGeneticHeterogeneityDiffuse2013]|FAIL| |
|
| 142 | +|[BTG2](BTG2)|Tier 3 GE[@loveGeneticLandscapeMutations2012], CE[@guoMutationBTG2Gene2022b]|[Love et al](papers/loveGeneticLandscapeMutations2012)|[@morinFrequentMutationHistonemodifying2011]|FAIL| |
|
| 143 | +|[C6orf27](C6orf27)|Tier 3 GE[@loveGeneticLandscapeMutations2012]|[Love et al](papers/loveGeneticLandscapeMutations2012)||FAIL| |
|
| 144 | +|[CAD](CAD)|Tier 3 GE[@loveGeneticLandscapeMutations2012]|[Love et al](papers/loveGeneticLandscapeMutations2012)|[@zhangGeneticHeterogeneityDiffuse2013]|FAIL| |
|
| 145 | +|[CCT6B](CCT6B)|Tier 3 GE[@loveGeneticLandscapeMutations2012]|[Love et al](papers/loveGeneticLandscapeMutations2012)||FAIL| |
|
| 146 | +|[CD79B](CD79B)|Tier 3 GE[@paneaWholeGenomeLandscape2019], FE[@davisChronicActiveBcellreceptor2010]|[Panea et al](papers/paneaWholeGenomeLandscape2019)|[@morinFrequentMutationHistonemodifying2011]|FAIL| |
|
| 147 | +|[CDH17](CDH17)|Tier 3 GE[@loveGeneticLandscapeMutations2012]|[Love et al](papers/loveGeneticLandscapeMutations2012)||FAIL| |
|
| 148 | +|[COL4A2](COL4A2)|Tier 3 GE[@loveGeneticLandscapeMutations2012]|[Love et al](papers/loveGeneticLandscapeMutations2012)||FAIL| |
|
| 149 | +|[CTCF](CTCF)|Tier 3 GE[@paneaWholeGenomeLandscape2019]|[Panea et al](papers/paneaWholeGenomeLandscape2019)||FAIL| |
|
| 150 | +|[CYB5D1](CYB5D1)|Tier 3 GE[@loveGeneticLandscapeMutations2012]|[Love et al](papers/loveGeneticLandscapeMutations2012)||FAIL| |
|
| 151 | +|[CYP4F22](CYP4F22)|Tier 3 GE[@loveGeneticLandscapeMutations2012]|[Love et al](papers/loveGeneticLandscapeMutations2012)||FAIL| |
|
| 152 | +|[DLGAP1](DLGAP1)|Tier 3 GE[@loveGeneticLandscapeMutations2012]|[Love et al](papers/loveGeneticLandscapeMutations2012)|[@zhangGeneticHeterogeneityDiffuse2013]|FAIL| |
|
| 153 | +|[DNMT1](DNMT1)|Tier 3 GE[@paneaWholeGenomeLandscape2019]|[Panea et al](papers/paneaWholeGenomeLandscape2019)||FAIL| |
|
| 154 | +|[DTX1](DTX1)|Tier 3 GE[@loveGeneticLandscapeMutations2012], FE[@demirandaExomeSequencingReveals2014], CE[@merirantaDeltex1MutationsPredict2017b]|[Love et al](papers/loveGeneticLandscapeMutations2012)|[@gomezUltraDeepSequencingReveals2023; @rossiCodingGenomeSplenic2012c; @zhangGeneticHeterogeneityDiffuse2013]|FAIL| |
|
| 155 | +|[EIF2C4](EIF2C4)|Tier 3 GE[@loveGeneticLandscapeMutations2012]|[Love et al](papers/loveGeneticLandscapeMutations2012)||FAIL| |
|
| 156 | +|[EML2](EML2)|Tier 3 GE[@loveGeneticLandscapeMutations2012]|[Love et al](papers/loveGeneticLandscapeMutations2012)||FAIL| |
|
| 157 | +|[ENTPD3](ENTPD3)|Tier 3 GE[@loveGeneticLandscapeMutations2012]|[Love et al](papers/loveGeneticLandscapeMutations2012)||FAIL| |
|
| 158 | +|[EPHB2](EPHB2)|Tier 3 GE[@loveGeneticLandscapeMutations2012]|[Love et al](papers/loveGeneticLandscapeMutations2012)||FAIL| |
|
| 159 | +|[ETS1](ETS1)|Tier 3 GE[@paneaWholeGenomeLandscape2019]|[Panea et al](papers/paneaWholeGenomeLandscape2019)|[@morinFrequentMutationHistonemodifying2011]|FAIL| |
|
| 160 | +|[FAM129B](FAM129B)|Tier 3 GE[@loveGeneticLandscapeMutations2012]|[Love et al](papers/loveGeneticLandscapeMutations2012)||FAIL| |
|
| 161 | +|[FGFR3](FGFR3)|Tier 3 GE[@loveGeneticLandscapeMutations2012]|[Love et al](papers/loveGeneticLandscapeMutations2012)||FAIL| |
|
| 162 | +|[FTCD](FTCD)|Tier 3 GE[@loveGeneticLandscapeMutations2012]|[Love et al](papers/loveGeneticLandscapeMutations2012)||FAIL| |
|
| 163 | +|[FZD3](FZD3)|Tier 3 GE[@paneaWholeGenomeLandscape2019]|[Panea et al](papers/paneaWholeGenomeLandscape2019)||FAIL| |
|
| 164 | +|[GRIK5](GRIK5)|Tier 3 GE[@loveGeneticLandscapeMutations2012]|[Love et al](papers/loveGeneticLandscapeMutations2012)||FAIL| |
|
| 165 | +|[HIST1H1C](HIST1H1C)|Tier 3 GE[@paneaWholeGenomeLandscape2019]|[Panea et al](papers/paneaWholeGenomeLandscape2019)|[@morinFrequentMutationHistonemodifying2011]|FAIL| |
|
| 166 | +|[HIST1H2AG](HIST1H2AG)|Tier 3 GE[@paneaWholeGenomeLandscape2019]|[Panea et al](papers/paneaWholeGenomeLandscape2019)|[@krysiakRecurrentSomaticMutations2017b; @morinMutationalStructuralAnalysis2013; @rossiCodingGenomeSplenic2012c]|FAIL| |
|
| 167 | +|[HIST1H2AM](HIST1H2AM)|Tier 3 GE[@paneaWholeGenomeLandscape2019]|[Panea et al](papers/paneaWholeGenomeLandscape2019)|[@chapuyMolecularSubtypesDiffuse2018b; @krysiakRecurrentSomaticMutations2017b]|FAIL| |
|
| 168 | +|[HIST1H2BK](HIST1H2BK)|Tier 3 GE[@paneaWholeGenomeLandscape2019]|[Panea et al](papers/paneaWholeGenomeLandscape2019)|[@rossiCodingGenomeSplenic2012c; @zhangGeneticHeterogeneityDiffuse2013]|FAIL| |
|
| 169 | +|[HIST1H3H](HIST1H3H)|Tier 3 GE[@paneaWholeGenomeLandscape2019]|[Panea et al](papers/paneaWholeGenomeLandscape2019)||FAIL| |
|
| 170 | +|[HIST1H3J](HIST1H3J)|Tier 3 GE[@paneaWholeGenomeLandscape2019]|[Panea et al](papers/paneaWholeGenomeLandscape2019)||FAIL| |
|
| 171 | +|[ICK](ICK)|Tier 3 GE[@loveGeneticLandscapeMutations2012]|[Love et al](papers/loveGeneticLandscapeMutations2012)||FAIL| |
|
| 172 | +|[ITPR3](ITPR3)|Tier 3 GE[@loveGeneticLandscapeMutations2012]|[Love et al](papers/loveGeneticLandscapeMutations2012)|[@tiacciPervasiveMutationsJAKSTAT2018b]|FAIL| |
|
| 173 | +|[KCNK10](KCNK10)|Tier 3 GE[@paneaWholeGenomeLandscape2019]|[Panea et al](papers/paneaWholeGenomeLandscape2019)||FAIL| |
|
| 174 | +|[KIFC3](KIFC3)|Tier 3 GE[@loveGeneticLandscapeMutations2012]|[Love et al](papers/loveGeneticLandscapeMutations2012)||FAIL| |
|
| 175 | +|[MAP3K6](MAP3K6)|Tier 3 GE[@loveGeneticLandscapeMutations2012]|[Love et al](papers/loveGeneticLandscapeMutations2012)||FAIL| |
|
| 176 | +|[MME](MME)|Tier 3 GE[@paneaWholeGenomeLandscape2019]|[Panea et al](papers/paneaWholeGenomeLandscape2019)||FAIL| |
|
| 177 | +|[MTOR](MTOR)|Tier 3 GE[@paneaWholeGenomeLandscape2019]|[Panea et al](papers/paneaWholeGenomeLandscape2019)|[@zhangGeneticHeterogeneityDiffuse2013]|FAIL| |
|
| 178 | +|[MYH10](MYH10)|Tier 3 GE[@loveGeneticLandscapeMutations2012]|[Love et al](papers/loveGeneticLandscapeMutations2012)||FAIL| |
|
| 179 | +|[NOTCH1](NOTCH1)|Tier 3 GE[@loveGeneticLandscapeMutations2012], CE[@kridelWholeTranscriptomeSequencing2012]|[Love et al](papers/loveGeneticLandscapeMutations2012)|[@beaLandscapeSomaticMutations2013; @pasqualucciAnalysisCodingGenome2011; @rossiCodingGenomeSplenic2012c]|FAIL| |
|
| 180 | +|[NRXN2](NRXN2)|Tier 3 GE[@loveGeneticLandscapeMutations2012]|[Love et al](papers/loveGeneticLandscapeMutations2012)|[@zhangGeneticHeterogeneityDiffuse2013]|FAIL| |
|
| 181 | +|[PABPC4L](PABPC4L)|Tier 3 GE[@paneaWholeGenomeLandscape2019]|[Panea et al](papers/paneaWholeGenomeLandscape2019)||FAIL| |
|
| 182 | +|[PC](PC)|Tier 3 GE[@loveGeneticLandscapeMutations2012]|[Love et al](papers/loveGeneticLandscapeMutations2012)||FAIL| |
|
| 183 | +|[PCDHA11](PCDHA11)|Tier 3 GE[@paneaWholeGenomeLandscape2019]|[Panea et al](papers/paneaWholeGenomeLandscape2019)||FAIL| |
|
| 184 | +|[PDZRN3](PDZRN3)|Tier 3 GE[@paneaWholeGenomeLandscape2019]|[Panea et al](papers/paneaWholeGenomeLandscape2019)|[@zhangGeneticHeterogeneityDiffuse2013]|FAIL| |
|
| 185 | +|[PIK3R1](PIK3R1)|Tier 3 GE[@paneaWholeGenomeLandscape2019]|[Panea et al](papers/paneaWholeGenomeLandscape2019)|[@zhangGeneticHeterogeneityDiffuse2013]|FAIL| |
|
| 186 | +|[POLRMT](POLRMT)|Tier 3 GE[@loveGeneticLandscapeMutations2012]|[Love et al](papers/loveGeneticLandscapeMutations2012)||FAIL| |
|
| 187 | +|[POR](POR)|Tier 3 GE[@loveGeneticLandscapeMutations2012]|[Love et al](papers/loveGeneticLandscapeMutations2012)||FAIL| |
|
| 188 | +|[PRSS22](PRSS22)|Tier 3 GE[@loveGeneticLandscapeMutations2012]|[Love et al](papers/loveGeneticLandscapeMutations2012)||FAIL| |
|
| 189 | +|[PTPRN](PTPRN)|Tier 3 GE[@loveGeneticLandscapeMutations2012]|[Love et al](papers/loveGeneticLandscapeMutations2012)||FAIL| |
|
| 190 | +|[PXDNL](PXDNL)|Tier 3 GE[@paneaWholeGenomeLandscape2019]|[Panea et al](papers/paneaWholeGenomeLandscape2019)||FAIL| |
|
| 191 | +|[RBP3](RBP3)|Tier 3 GE[@loveGeneticLandscapeMutations2012]|[Love et al](papers/loveGeneticLandscapeMutations2012)||FAIL| |
|
| 192 | +|[RET](RET)|Tier 3 GE[@loveGeneticLandscapeMutations2012]|[Love et al](papers/loveGeneticLandscapeMutations2012)|[@fanComprehensiveCharacterizationDriver2020b]|FAIL| |
|
| 193 | +|[SALL3](SALL3)|Tier 3 GE[@loveGeneticLandscapeMutations2012]|[Love et al](papers/loveGeneticLandscapeMutations2012)|[@zhangGenomicLandscapeMantle2014]|FAIL| |
|
| 194 | +|[SAPS2](SAPS2)|Tier 3 GE[@loveGeneticLandscapeMutations2012]|[Love et al](papers/loveGeneticLandscapeMutations2012)||FAIL| |
|
| 195 | +|[SBF1](SBF1)|Tier 3 GE[@loveGeneticLandscapeMutations2012]|[Love et al](papers/loveGeneticLandscapeMutations2012)||FAIL| |
|
| 196 | +|[SF3B1](SF3B1)|Tier 3 GE[@loveGeneticLandscapeMutations2012]|[Love et al](papers/loveGeneticLandscapeMutations2012)|[@reddyGeneticFunctionalDrivers2017]|FAIL| |
|
| 197 | +|[SHANK1](SHANK1)|Tier 3 GE[@loveGeneticLandscapeMutations2012]|[Love et al](papers/loveGeneticLandscapeMutations2012)||FAIL| |
|
| 198 | +|[SLC29A2](SLC29A2)|Tier 3 GE[@loveGeneticLandscapeMutations2012]|[Love et al](papers/loveGeneticLandscapeMutations2012)||FAIL| |
|
| 199 | +|[SNTB2](SNTB2)|Tier 3 GE[@paneaWholeGenomeLandscape2019]|[Panea et al](papers/paneaWholeGenomeLandscape2019)||FAIL| |
|
| 200 | +|[SYNGAP1](SYNGAP1)|Tier 3 GE[@loveGeneticLandscapeMutations2012]|[Love et al](papers/loveGeneticLandscapeMutations2012)||FAIL| |
|
| 201 | +|[TBC1D9B](TBC1D9B)|Tier 3 GE[@loveGeneticLandscapeMutations2012]|[Love et al](papers/loveGeneticLandscapeMutations2012)||FAIL| |
|
| 202 | +|[TIGD6](TIGD6)|Tier 3 GE[@loveGeneticLandscapeMutations2012]|[Love et al](papers/loveGeneticLandscapeMutations2012)||FAIL| |
|
| 203 | +|[TPST2](TPST2)|Tier 3 GE[@loveGeneticLandscapeMutations2012]|[Love et al](papers/loveGeneticLandscapeMutations2012)||FAIL| |
|
| 204 | +|[WDR7](WDR7)|Tier 3 GE[@paneaWholeGenomeLandscape2019]|[Panea et al](papers/paneaWholeGenomeLandscape2019)||FAIL| |
|
| 205 | +|[ZNF229](ZNF229)|Tier 3 GE[@loveGeneticLandscapeMutations2012]|[Love et al](papers/loveGeneticLandscapeMutations2012)||FAIL| |
|
| 206 | 206 | |
| 207 | 207 | |
| 208 | 208 | # References |