CXCR5.md
... ...
@@ -22,8 +22,8 @@ timeline
22 22
23 23
|Entity|Tier|Description |
24 24
|:------:|:----:|--------------------------|
25
-|![PMBL](images/icons/PMBL_tier2.png)|2|relevance in PMBL/cHL/GZL not firmly established[@mottokIntegrativeGenomicAnalysis2019b]|
26
-|![DLBCL](images/icons/DLBCL_tier1.png) |1-a | aSHM target and high-confidence DLBCL gene[@schmitzGeneticsPathogenesisDiffuse2018a]|
25
+|![PMBL](images/icons/PMBL_tier2.png)|2|relevance in PMBL/cHL/GZL not firmly established[@mottokIntegrativeGenomicAnalysis2019]|
26
+|![DLBCL](images/icons/DLBCL_tier1.png) |1-a | aSHM target and high-confidence DLBCL gene[@schmitzGeneticsPathogenesisDiffuse2018]|
27 27
28 28
## Mutation incidence in large patient cohorts (GAMBL reanalysis)
29 29
CYP2A6.md
... ...
@@ -18,7 +18,7 @@ timeline
18 18
19 19
|Entity|Tier|Description |
20 20
|:------:|:----:|--------------------------------------|
21
-|![FL](images/icons/FL_tier2.png) |2 |relevance in FL not firmly established[@russler-germainMutationsAssociatedProgression2023b]|
21
+|![FL](images/icons/FL_tier2.png) |2 |relevance in FL not firmly established[@russler-germainMutationsAssociatedProgression2023]|
22 22
23 23
## Mutation incidence in large patient cohorts (GAMBL reanalysis)
24 24
DDX3X.md
... ...
@@ -25,9 +25,9 @@ timeline
25 25
26 26
|Entity|Tier|Description |
27 27
|:------:|:----:|--------------------------------------|
28
-|![PMBL](images/icons/PMBL_tier1.png)|1|high-confidence PMBL/cHL/GZL gene[@mottokIntegrativeGenomicAnalysis2019b]|
28
+|![PMBL](images/icons/PMBL_tier1.png)|1|high-confidence PMBL/cHL/GZL gene[@mottokIntegrativeGenomicAnalysis2019]|
29 29
|![BL](images/icons/BL_tier1.png) |1 | high-confidence BL gene [@schmitzBurkittLymphomaPathogenesis2012]|
30
-|![DLBCL](images/icons/DLBCL_tier1.png) |1 | high-confidence DLBCL gene [@reddyGeneticFunctionalDrivers2017; @schmitzGeneticsPathogenesisDiffuse2018a; @arthurGenomewideDiscoverySomatic2018]|
30
+|![DLBCL](images/icons/DLBCL_tier1.png) |1 | high-confidence DLBCL gene [@reddyGeneticFunctionalDrivers2017; @schmitzGeneticsPathogenesisDiffuse2018; @arthurGenomewideDiscoverySomatic2018]|
31 31
|![FL](images/icons/FL_tier2.png) |2 | Although recurrent, the relevance of mutations in FL is tenuous |
32 32
33 33
## Mutation incidence in large patient cohorts (GAMBL reanalysis)
DGKB.md
... ...
@@ -20,7 +20,7 @@ timeline
20 20
21 21
|Entity|Tier|Description|
22 22
|:------:|:----:|--------------------------------------|
23
-|![PMBL](images/icons/PMBL_tier2.png)|2|relevance in PMBL/cHL/GZL not firmly established[@tiacciPervasiveMutationsJAKSTAT2018b]|
23
+|![PMBL](images/icons/PMBL_tier2.png)|2|relevance in PMBL/cHL/GZL not firmly established[@tiacciPervasiveMutationsJAKSTAT2018]|
24 24
25 25
26 26
## Mutation incidence in large patient cohorts (GAMBL reanalysis)
DHX15.md
... ...
@@ -19,7 +19,7 @@ timeline
19 19
20 20
|Entity|Tier|Description |
21 21
|:------:|:----:|--------------------------------------|
22
-|![FL](images/icons/FL_tier2.png) |2 |relevance in FL not firmly established[@hubschmannMutationalMechanismsShaping2021b]|
22
+|![FL](images/icons/FL_tier2.png) |2 |relevance in FL not firmly established[@hubschmannMutationalMechanismsShaping2021]|
23 23
24 24
## Mutation incidence in large patient cohorts (GAMBL reanalysis)
25 25
DHX16.md
... ...
@@ -19,7 +19,7 @@ timeline
19 19
20 20
|Entity|Tier|Description |
21 21
|:------:|:----:|-----------------------------------------|
22
-|![DLBCL](images/icons/DLBCL_tier2.png) |2 |relevance in DLBCL not firmly established[@hubschmannMutationalMechanismsShaping2021b]|
22
+|![DLBCL](images/icons/DLBCL_tier2.png) |2 |relevance in DLBCL not firmly established[@hubschmannMutationalMechanismsShaping2021]|
23 23
24 24
## Mutation incidence in large patient cohorts (GAMBL reanalysis)
25 25
FOXP1.md
... ...
@@ -44,8 +44,8 @@ timeline
44 44
|chr3 |71104986 |71119518|[TSS-4](https://genome.ucsc.edu/s/rdmorin/GAMBL%20hg19?position=chr3%3A71104986%2D71119518) |active_promoter |
45 45
|chr3 |71176427 |71180960|[TSS-3](https://genome.ucsc.edu/s/rdmorin/GAMBL%20hg19?position=chr3%3A71176427%2D71180960) |active_promoter |
46 46
|chr3 |71350633 |71357665|[TSS-2](https://genome.ucsc.edu/s/rdmorin/GAMBL%20hg19?position=chr3%3A71350633%2D71357665) |active_promoter |
47
-|chr3 |71503103 |71504870|[intron-1b](https://genome.ucsc.edu/s/rdmorin/GAMBL%20hg19?position=chr3%3A71503103%2D71504870)|intron |
48
-|chr3 |71550753 |71551478|[intron-1a](https://genome.ucsc.edu/s/rdmorin/GAMBL%20hg19?position=chr3%3A71550753%2D71551478)|intron |
47
+|chr3 |71503103 |71504870|[intron-1B](https://genome.ucsc.edu/s/rdmorin/GAMBL%20hg19?position=chr3%3A71503103%2D71504870)|intron |
48
+|chr3 |71550753 |71551478|[intron-1A](https://genome.ucsc.edu/s/rdmorin/GAMBL%20hg19?position=chr3%3A71550753%2D71551478)|intron |
49 49
|chr3 |71626341 |71635648|[TSS-1](https://genome.ucsc.edu/s/rdmorin/GAMBL%20hg19?position=chr3%3A71626341%2D71635648) |active_promoter |
50 50
51 51