9e4c240b08a9d47c1766a814dbe1aa1f17c9d97a
BTBD3.md
| ... | ... | @@ -44,6 +44,30 @@ View all variants in GenomePaint [hg19](https://morinlab.github.io/LLMPP/GAMBL/B |
| 44 | 44 | ## BTBD3 Expression |
| 45 | 45 |  |
| 46 | 46 | |
| 47 | +## Representative Mutations |
|
| 48 | + |
|
| 49 | +## All Mutations |
|
| 50 | + |
|
| 51 | +[Reddy_2193T](https://www.bcgsc.ca/downloads/morinlab/GAMBL/Reddy/igv_reports/Reddy_2193T.html) |
|
| 52 | +[Reddy_2219T](https://www.bcgsc.ca/downloads/morinlab/GAMBL/Reddy/igv_reports/Reddy_2219T.html) |
|
| 53 | +[Reddy_2240T](https://www.bcgsc.ca/downloads/morinlab/GAMBL/Reddy/igv_reports/Reddy_2240T.html) |
|
| 54 | +[Reddy_2475T](https://www.bcgsc.ca/downloads/morinlab/GAMBL/Reddy/igv_reports/Reddy_2475T.html) |
|
| 55 | +[Reddy_2603T](https://www.bcgsc.ca/downloads/morinlab/GAMBL/Reddy/igv_reports/Reddy_2603T.html) |
|
| 56 | +[Reddy_2698T](https://www.bcgsc.ca/downloads/morinlab/GAMBL/Reddy/igv_reports/Reddy_2698T.html) |
|
| 57 | +[Reddy_2838T](https://www.bcgsc.ca/downloads/morinlab/GAMBL/Reddy/igv_reports/Reddy_2838T.html) |
|
| 58 | +[Reddy_2950T](https://www.bcgsc.ca/downloads/morinlab/GAMBL/Reddy/igv_reports/Reddy_2950T.html) |
|
| 59 | +[Reddy_3387T](https://www.bcgsc.ca/downloads/morinlab/GAMBL/Reddy/igv_reports/Reddy_3387T.html) |
|
| 60 | +[Reddy_3479T](https://www.bcgsc.ca/downloads/morinlab/GAMBL/Reddy/igv_reports/Reddy_3479T.html) |
|
| 61 | +[Reddy_3548T](https://www.bcgsc.ca/downloads/morinlab/GAMBL/Reddy/igv_reports/Reddy_3548T.html) |
|
| 62 | +[Reddy_3566T](https://www.bcgsc.ca/downloads/morinlab/GAMBL/Reddy/igv_reports/Reddy_3566T.html) |
|
| 63 | +[Reddy_3594T](https://www.bcgsc.ca/downloads/morinlab/GAMBL/Reddy/igv_reports/Reddy_3594T.html) |
|
| 64 | +[Reddy_3706T](https://www.bcgsc.ca/downloads/morinlab/GAMBL/Reddy/igv_reports/Reddy_3706T.html) |
|
| 65 | +[Reddy_3708T](https://www.bcgsc.ca/downloads/morinlab/GAMBL/Reddy/igv_reports/Reddy_3708T.html) |
|
| 66 | +[Reddy_3759T](https://www.bcgsc.ca/downloads/morinlab/GAMBL/Reddy/igv_reports/Reddy_3759T.html) |
|
| 67 | +[Reddy_3916T](https://www.bcgsc.ca/downloads/morinlab/GAMBL/Reddy/igv_reports/Reddy_3916T.html) |
|
| 68 | +[Reddy_3918T](https://www.bcgsc.ca/downloads/morinlab/GAMBL/Reddy/igv_reports/Reddy_3918T.html) |
|
| 69 | +[Reddy_759T](https://www.bcgsc.ca/downloads/morinlab/GAMBL/Reddy/igv_reports/Reddy_759T.html) |
|
| 70 | + |
|
| 47 | 71 | ## References |
| 48 | 72 | 1. *Reddy A, Zhang J, Davis NS, Moffitt AB, Love CL, Waldrop A, Leppa S, Pasanen A, Meriranta L, Karjalainen-Lindsberg ML, Nørgaard P, Pedersen M, Gang AO, Høgdall E, Heavican TB, Lone W, Iqbal J, Qin Q, Li G, Kim SY, Healy J, Richards KL, Fedoriw Y, Bernal-Mizrachi L, Koff JL, Staton AD, Flowers CR, Paltiel O, Goldschmidt N, Calaminici M, Clear A, Gribben J, Nguyen E, Czader MB, Ondrejka SL, Collie A, Hsi ED, Tse E, Au-Yeung RKH, Kwong YL, Srivastava G, Choi WWL, Evens AM, Pilichowska M, Sengar M, Reddy N, Li S, Chadburn A, Gordon LI, Jaffe ES, Levy S, Rempel R, Tzeng T, Happ LE, Dave T, Rajagopalan D, Datta J, Dunson DB, Dave SS. Genetic and Functional Drivers of Diffuse Large B Cell Lymphoma. Cell. 2017 Oct;171(2):481-494.e15.* |
| 49 | 73 |
papers/reddyGeneticFunctionalDrivers2017.pdf
papers/reddyGeneticFunctionalDrivers2017_tmp.html
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| 368 | -<h1 id="reddygeneticfunctionaldrivers2017">@reddyGeneticFunctionalDrivers2017</h1> |
|
| 369 | -<h2 id="summary-of-novel-genes">Summary of novel genes</h2> |
|
| 370 | -<table> |
|
| 371 | -<thead> |
|
| 372 | -<tr> |
|
| 373 | -<th style="text-align:center">Entity</th> |
|
| 374 | -<th style="text-align:center">Tier 1 genes</th> |
|
| 375 | -<th style="text-align:center">Tier 2 genes</th> |
|
| 376 | -</tr> |
|
| 377 | -</thead> |
|
| 378 | -<tbody> |
|
| 379 | -<tr> |
|
| 380 | -<td style="text-align:center">DLBCL</td> |
|
| 381 | -<td style="text-align:center">7</td> |
|
| 382 | -<td style="text-align:center">53</td> |
|
| 383 | -</tr> |
|
| 384 | -</tbody> |
|
| 385 | -</table> |
|
| 386 | -<pre><code class="language-mermaid"><div class="mermaid">--- |
|
| 387 | -config: |
|
| 388 | - sankey: |
|
| 389 | - showValues: true |
|
| 390 | - linkColor: target |
|
| 391 | - width: 600 |
|
| 392 | - height: 300 |
|
| 393 | - nodeAlignment: right |
|
| 394 | - prefix: '(' |
|
| 395 | - suffix: ' genes)' |
|
| 396 | ---- |
|
| 397 | -sankey-beta |
|
| 398 | -This study, New Tier 1, 7 |
|
| 399 | -New Tier 1, DLBCL Tier 1, 7 |
|
| 400 | -This study, New Tier 2, 53 |
|
| 401 | -New Tier 2, DLBCL Tier 2, 53 |
|
| 402 | -All other DLBCL studies, DLBCL Tier 1, 121 |
|
| 403 | -All other DLBCL studies, DLBCL Tier 2, 145 |
|
| 404 | -</div></code></pre> |
|
| 405 | -<h2 id="novel-genes-reported-in-this-study">Novel genes reported in this study</h2> |
|
| 406 | -<h3 id="tier-1">Tier 1</h3> |
|
| 407 | -<table> |
|
| 408 | -<thead> |
|
| 409 | -<tr> |
|
| 410 | -<th style="text-align:left">Novel gene</th> |
|
| 411 | -<th style="text-align:center">DLBCL tier</th> |
|
| 412 | -<th style="text-align:center">Average variant quality</th> |
|
| 413 | -</tr> |
|
| 414 | -</thead> |
|
| 415 | -<tbody> |
|
| 416 | -<tr> |
|
| 417 | -<td style="text-align:left"><a href="../ATM">ATM</a></td> |
|
| 418 | -<td style="text-align:center">1</td> |
|
| 419 | -<td style="text-align:center">★ ★ ★ ☆ ☆</td> |
|
| 420 | -</tr> |
|
| 421 | -<tr> |
|
| 422 | -<td style="text-align:left"><a href="../BIRC6">BIRC6</a></td> |
|
| 423 | -<td style="text-align:center">1</td> |
|
| 424 | -<td style="text-align:center">★ ★ ★ ☆ ☆</td> |
|
| 425 | -</tr> |
|
| 426 | -<tr> |
|
| 427 | -<td style="text-align:left"><a href="../HIST1H2BC">HIST1H2BC</a></td> |
|
| 428 | -<td style="text-align:center">1</td> |
|
| 429 | -<td style="text-align:center">★ ★ ★ ★ ☆</td> |
|
| 430 | -</tr> |
|
| 431 | -<tr> |
|
| 432 | -<td style="text-align:left"><a href="../HNRNPU">HNRNPU</a></td> |
|
| 433 | -<td style="text-align:center">1</td> |
|
| 434 | -<td style="text-align:center">★ ★ ★ ☆ ☆</td> |
|
| 435 | -</tr> |
|
| 436 | -<tr> |
|
| 437 | -<td style="text-align:left"><a href="../SETD1B">SETD1B</a></td> |
|
| 438 | -<td style="text-align:center">1</td> |
|
| 439 | -<td style="text-align:center">★ ★ ☆ ☆ ☆</td> |
|
| 440 | -</tr> |
|
| 441 | -<tr> |
|
| 442 | -<td style="text-align:left"><a href="../TOX">TOX</a></td> |
|
| 443 | -<td style="text-align:center">1</td> |
|
| 444 | -<td style="text-align:center">★ ★ ★ ☆ ☆</td> |
|
| 445 | -</tr> |
|
| 446 | -<tr> |
|
| 447 | -<td style="text-align:left"><a href="../UBE2A">UBE2A</a></td> |
|
| 448 | -<td style="text-align:center">1</td> |
|
| 449 | -<td style="text-align:center">★ ★ ★ ☆ ☆</td> |
|
| 450 | -</tr> |
|
| 451 | -</tbody> |
|
| 452 | -</table> |
|
| 453 | -<h3 id="tier-2">Tier 2</h3> |
|
| 454 | -<table> |
|
| 455 | -<thead> |
|
| 456 | -<tr> |
|
| 457 | -<th style="text-align:left">Novel gene</th> |
|
| 458 | -<th style="text-align:center">DLBCL tier</th> |
|
| 459 | -<th style="text-align:center">Average variant quality</th> |
|
| 460 | -<th style="text-align:center">QC outcome</th> |
|
| 461 | -</tr> |
|
| 462 | -</thead> |
|
| 463 | -<tbody> |
|
| 464 | -<tr> |
|
| 465 | -<td style="text-align:left"><a href="../ARID5B">ARID5B</a></td> |
|
| 466 | -<td style="text-align:center">2</td> |
|
| 467 | -<td style="text-align:center">★ ★ ★ ★ ☆</td> |
|
| 468 | -<td style="text-align:center"><strong>Pass</strong></td> |
|
| 469 | -</tr> |
|
| 470 | -<tr> |
|
| 471 | -<td style="text-align:left"><a href="../ANKRD17">ANKRD17</a></td> |
|
| 472 | -<td style="text-align:center">2</td> |
|
| 473 | -<td style="text-align:center">★ ★ ★ ☆ ☆</td> |
|
| 474 | -<td style="text-align:center"><strong>Fail</strong></td> |
|
| 475 | -</tr> |
|
| 476 | -<tr> |
|
| 477 | -<td style="text-align:left"><a href="../BTBD3">BTBD3</a></td> |
|
| 478 | -<td style="text-align:center">2</td> |
|
| 479 | -<td style="text-align:center">★ ★ ★ ★ ☆</td> |
|
| 480 | -<td style="text-align:center"><strong>Pass</strong></td> |
|
| 481 | -</tr> |
|
| 482 | -<tr> |
|
| 483 | -<td style="text-align:left"><a href="../SETD5">SETD5</a></td> |
|
| 484 | -<td style="text-align:center">2</td> |
|
| 485 | -<td style="text-align:center">★ ★ ★ ☆ ☆</td> |
|
| 486 | -<td style="text-align:center"><strong>Pass</strong></td> |
|
| 487 | -</tr> |
|
| 488 | -<tr> |
|
| 489 | -<td style="text-align:left"><a href="../ATR">ATR</a></td> |
|
| 490 | -<td style="text-align:center">2</td> |
|
| 491 | -<td style="text-align:center">★ ★ ★ ☆ ☆</td> |
|
| 492 | -<td style="text-align:center"><strong>Pass</strong></td> |
|
| 493 | -</tr> |
|
| 494 | -<tr> |
|
| 495 | -<td style="text-align:left"><a href="../BRINP3">BRINP3</a></td> |
|
| 496 | -<td style="text-align:center">2</td> |
|
| 497 | -<td style="text-align:center">★ ★ ★ ☆ ☆</td> |
|
| 498 | -<td style="text-align:center"><strong>Pass</strong></td> |
|
| 499 | -</tr> |
|
| 500 | -<tr> |
|
| 501 | -<td style="text-align:left"><a href="../CASP8">CASP8</a></td> |
|
| 502 | -<td style="text-align:center">2</td> |
|
| 503 | -<td style="text-align:center">★ ★ ★ ☆ ☆</td> |
|
| 504 | -<td style="text-align:center"><strong>Pass</strong></td> |
|
| 505 | -</tr> |
|
| 506 | -<tr> |
|
| 507 | -<td style="text-align:left"><a href="../TGFBR2">TGFBR2</a></td> |
|
| 508 | -<td style="text-align:center">2</td> |
|
| 509 | -<td style="text-align:center">★ ★ ★ ☆ ☆</td> |
|
| 510 | -<td style="text-align:center"><strong>Pass</strong></td> |
|
| 511 | -</tr> |
|
| 512 | -<tr> |
|
| 513 | -<td style="text-align:left"><a href="../TIPARP">TIPARP</a></td> |
|
| 514 | -<td style="text-align:center">2</td> |
|
| 515 | -<td style="text-align:center">★ ★ ★ ☆ ☆</td> |
|
| 516 | -<td style="text-align:center"><strong>Pass</strong></td> |
|
| 517 | -</tr> |
|
| 518 | -<tr> |
|
| 519 | -<td style="text-align:left"><a href="../CD22">CD22</a></td> |
|
| 520 | -<td style="text-align:center">2</td> |
|
| 521 | -<td style="text-align:center">★ ★ ★ ☆ ☆</td> |
|
| 522 | -<td style="text-align:center"><strong>Pass</strong></td> |
|
| 523 | -</tr> |
|
| 524 | -<tr> |
|
| 525 | -<td style="text-align:left"><a href="../NF1">NF1</a></td> |
|
| 526 | -<td style="text-align:center">2</td> |
|
| 527 | -<td style="text-align:center">★ ★ ★ ☆ ☆</td> |
|
| 528 | -<td style="text-align:center"><strong>Pass</strong></td> |
|
| 529 | -</tr> |
|
| 530 | -<tr> |
|
| 531 | -<td style="text-align:left"><a href="../IKBKB">IKBKB</a></td> |
|
| 532 | -<td style="text-align:center">2</td> |
|
| 533 | -<td style="text-align:center">★ ★ ★ ☆ ☆</td> |
|
| 534 | -<td style="text-align:center"><strong>Pass</strong></td> |
|
| 535 | -</tr> |
|
| 536 | -<tr> |
|
| 537 | -<td style="text-align:left"><a href="../JUNB">JUNB</a></td> |
|
| 538 | -<td style="text-align:center">2</td> |
|
| 539 | -<td style="text-align:center">★ ★ ★ ☆ ☆</td> |
|
| 540 | -<td style="text-align:center"><strong>Pass</strong></td> |
|
| 541 | -</tr> |
|
| 542 | -<tr> |
|
| 543 | -<td style="text-align:left"><a href="../KCMF1">KCMF1</a></td> |
|
| 544 | -<td style="text-align:center">2</td> |
|
| 545 | -<td style="text-align:center">★ ★ ★ ☆ ☆</td> |
|
| 546 | -<td style="text-align:center"><strong>Pass</strong></td> |
|
| 547 | -</tr> |
|
| 548 | -<tr> |
|
| 549 | -<td style="text-align:left"><a href="../MAGT1">MAGT1</a></td> |
|
| 550 | -<td style="text-align:center">2</td> |
|
| 551 | -<td style="text-align:center">★ ★ ★ ☆ ☆</td> |
|
| 552 | -<td style="text-align:center"><strong>Pass</strong></td> |
|
| 553 | -</tr> |
|
| 554 | -<tr> |
|
| 555 | -<td style="text-align:left"><a href="../MECOM">MECOM</a></td> |
|
| 556 | -<td style="text-align:center">2</td> |
|
| 557 | -<td style="text-align:center">★ ★ ★ ☆ ☆</td> |
|
| 558 | -<td style="text-align:center"><strong>Pass</strong></td> |
|
| 559 | -</tr> |
|
| 560 | -<tr> |
|
| 561 | -<td style="text-align:left"><a href="../PTPN6">PTPN6</a></td> |
|
| 562 | -<td style="text-align:center">2</td> |
|
| 563 | -<td style="text-align:center">★ ★ ★ ☆ ☆</td> |
|
| 564 | -<td style="text-align:center"><strong>Pass</strong></td> |
|
| 565 | -</tr> |
|
| 566 | -<tr> |
|
| 567 | -<td style="text-align:left"><a href="../MET">MET</a></td> |
|
| 568 | -<td style="text-align:center">2</td> |
|
| 569 | -<td style="text-align:center">★ ★ ★ ☆ ☆</td> |
|
| 570 | -<td style="text-align:center"><strong>Pass</strong></td> |
|
| 571 | -</tr> |
|
| 572 | -<tr> |
|
| 573 | -<td style="text-align:left"><a href="../ZFX">ZFX</a></td> |
|
| 574 | -<td style="text-align:center">2</td> |
|
| 575 | -<td style="text-align:center">★ ★ ★ ☆ ☆</td> |
|
| 576 | -<td style="text-align:center"><strong>Pass</strong></td> |
|
| 577 | -</tr> |
|
| 578 | -<tr> |
|
| 579 | -<td style="text-align:left"><a href="../YY1">YY1</a></td> |
|
| 580 | -<td style="text-align:center">2</td> |
|
| 581 | -<td style="text-align:center">★ ★ ★ ☆ ☆</td> |
|
| 582 | -<td style="text-align:center"><strong>Pass</strong></td> |
|
| 583 | -</tr> |
|
| 584 | -<tr> |
|
| 585 | -<td style="text-align:left"><a href="../FOXP1">FOXP1</a></td> |
|
| 586 | -<td style="text-align:center">2</td> |
|
| 587 | -<td style="text-align:center">★ ★ ★ ☆ ☆</td> |
|
| 588 | -<td style="text-align:center"><strong>Pass</strong></td> |
|
| 589 | -</tr> |
|
| 590 | -<tr> |
|
| 591 | -<td style="text-align:left"><a href="../FUBP1">FUBP1</a></td> |
|
| 592 | -<td style="text-align:center">2</td> |
|
| 593 | -<td style="text-align:center">★ ★ ★ ☆ ☆</td> |
|
| 594 | -<td style="text-align:center"><strong>Pass</strong></td> |
|
| 595 | -</tr> |
|
| 596 | -<tr> |
|
| 597 | -<td style="text-align:left"><a href="../GOLGA5">GOLGA5</a></td> |
|
| 598 | -<td style="text-align:center">2</td> |
|
| 599 | -<td style="text-align:center">★ ★ ★ ☆ ☆</td> |
|
| 600 | -<td style="text-align:center"><strong>Pass</strong></td> |
|
| 601 | -</tr> |
|
| 602 | -<tr> |
|
| 603 | -<td style="text-align:left"><a href="../MSH6">MSH6</a></td> |
|
| 604 | -<td style="text-align:center">2</td> |
|
| 605 | -<td style="text-align:center">★ ★ ★ ☆ ☆</td> |
|
| 606 | -<td style="text-align:center"><strong>Pass</strong></td> |
|
| 607 | -</tr> |
|
| 608 | -<tr> |
|
| 609 | -<td style="text-align:left"><a href="../CDC73">CDC73</a></td> |
|
| 610 | -<td style="text-align:center">2</td> |
|
| 611 | -<td style="text-align:center">★ ★ ☆ ☆ ☆</td> |
|
| 612 | -<td style="text-align:center"><strong>Fail</strong></td> |
|
| 613 | -</tr> |
|
| 614 | -<tr> |
|
| 615 | -<td style="text-align:left"><a href="../CHD1">CHD1</a></td> |
|
| 616 | -<td style="text-align:center">2</td> |
|
| 617 | -<td style="text-align:center">★ ★ ☆ ☆ ☆</td> |
|
| 618 | -<td style="text-align:center"><strong>Fail</strong></td> |
|
| 619 | -</tr> |
|
| 620 | -<tr> |
|
| 621 | -<td style="text-align:left"><a href="../CHD8">CHD8</a></td> |
|
| 622 | -<td style="text-align:center">2</td> |
|
| 623 | -<td style="text-align:center">★ ★ ☆ ☆ ☆</td> |
|
| 624 | -<td style="text-align:center"><strong>Fail</strong></td> |
|
| 625 | -</tr> |
|
| 626 | -<tr> |
|
| 627 | -<td style="text-align:left"><a href="../CHST2">CHST2</a></td> |
|
| 628 | -<td style="text-align:center">2</td> |
|
| 629 | -<td style="text-align:center">★ ★ ☆ ☆ ☆</td> |
|
| 630 | -<td style="text-align:center"><strong>Fail</strong></td> |
|
| 631 | -</tr> |
|
| 632 | -<tr> |
|
| 633 | -<td style="text-align:left"><a href="../DCAF6">DCAF6</a></td> |
|
| 634 | -<td style="text-align:center">2</td> |
|
| 635 | -<td style="text-align:center">★ ★ ☆ ☆ ☆</td> |
|
| 636 | -<td style="text-align:center"><strong>Fail</strong></td> |
|
| 637 | -</tr> |
|
| 638 | -<tr> |
|
| 639 | -<td style="text-align:left"><a href="../DDX10">DDX10</a></td> |
|
| 640 | -<td style="text-align:center">2</td> |
|
| 641 | -<td style="text-align:center">★ ★ ☆ ☆ ☆</td> |
|
| 642 | -<td style="text-align:center"><strong>Fail</strong></td> |
|
| 643 | -</tr> |
|
| 644 | -<tr> |
|
| 645 | -<td style="text-align:left"><a href="../DICER1">DICER1</a></td> |
|
| 646 | -<td style="text-align:center">2</td> |
|
| 647 | -<td style="text-align:center">★ ★ ☆ ☆ ☆</td> |
|
| 648 | -<td style="text-align:center"><strong>Fail</strong></td> |
|
| 649 | -</tr> |
|
| 650 | -<tr> |
|
| 651 | -<td style="text-align:left"><a href="../HRAS">HRAS</a></td> |
|
| 652 | -<td style="text-align:center">2</td> |
|
| 653 | -<td style="text-align:center">★ ★ ☆ ☆ ☆</td> |
|
| 654 | -<td style="text-align:center"><strong>Fail</strong></td> |
|
| 655 | -</tr> |
|
| 656 | -<tr> |
|
| 657 | -<td style="text-align:left"><a href="../LIN54">LIN54</a></td> |
|
| 658 | -<td style="text-align:center">2</td> |
|
| 659 | -<td style="text-align:center">★ ★ ☆ ☆ ☆</td> |
|
| 660 | -<td style="text-align:center"><strong>Fail</strong></td> |
|
| 661 | -</tr> |
|
| 662 | -<tr> |
|
| 663 | -<td style="text-align:left"><a href="../MAP4K4">MAP4K4</a></td> |
|
| 664 | -<td style="text-align:center">2</td> |
|
| 665 | -<td style="text-align:center">★ ★ ☆ ☆ ☆</td> |
|
| 666 | -<td style="text-align:center"><strong>Fail</strong></td> |
|
| 667 | -</tr> |
|
| 668 | -<tr> |
|
| 669 | -<td style="text-align:left"><a href="../MCL1">MCL1</a></td> |
|
| 670 | -<td style="text-align:center">2</td> |
|
| 671 | -<td style="text-align:center">★ ★ ☆ ☆ ☆</td> |
|
| 672 | -<td style="text-align:center"><strong>Fail</strong></td> |
|
| 673 | -</tr> |
|
| 674 | -<tr> |
|
| 675 | -<td style="text-align:left"><a href="../MSH2">MSH2</a></td> |
|
| 676 | -<td style="text-align:center">2</td> |
|
| 677 | -<td style="text-align:center">★ ★ ☆ ☆ ☆</td> |
|
| 678 | -<td style="text-align:center"><strong>Fail</strong></td> |
|
| 679 | -</tr> |
|
| 680 | -<tr> |
|
| 681 | -<td style="text-align:left"><a href="../GNAS">GNAS</a></td> |
|
| 682 | -<td style="text-align:center">2</td> |
|
| 683 | -<td style="text-align:center">★ ★ ☆ ☆ ☆</td> |
|
| 684 | -<td style="text-align:center"><strong>Fail</strong></td> |
|
| 685 | -</tr> |
|
| 686 | -<tr> |
|
| 687 | -<td style="text-align:left"><a href="../MYB">MYB</a></td> |
|
| 688 | -<td style="text-align:center">2</td> |
|
| 689 | -<td style="text-align:center">★ ★ ☆ ☆ ☆</td> |
|
| 690 | -<td style="text-align:center"><strong>Fail</strong></td> |
|
| 691 | -</tr> |
|
| 692 | -<tr> |
|
| 693 | -<td style="text-align:left"><a href="../NCOR1">NCOR1</a></td> |
|
| 694 | -<td style="text-align:center">2</td> |
|
| 695 | -<td style="text-align:center">★ ★ ☆ ☆ ☆</td> |
|
| 696 | -<td style="text-align:center"><strong>Fail</strong></td> |
|
| 697 | -</tr> |
|
| 698 | -<tr> |
|
| 699 | -<td style="text-align:left"><a href="../NFKB2">NFKB2</a></td> |
|
| 700 | -<td style="text-align:center">2</td> |
|
| 701 | -<td style="text-align:center">★ ★ ☆ ☆ ☆</td> |
|
| 702 | -<td style="text-align:center"><strong>Fail</strong></td> |
|
| 703 | -</tr> |
|
| 704 | -<tr> |
|
| 705 | -<td style="text-align:left"><a href="../PHF6">PHF6</a></td> |
|
| 706 | -<td style="text-align:center">2</td> |
|
| 707 | -<td style="text-align:center">★ ★ ☆ ☆ ☆</td> |
|
| 708 | -<td style="text-align:center"><strong>Fail</strong></td> |
|
| 709 | -</tr> |
|
| 710 | -<tr> |
|
| 711 | -<td style="text-align:left"><a href="../PIK3CD">PIK3CD</a></td> |
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| 712 | -<td style="text-align:center">2</td> |
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| 713 | -<td style="text-align:center">★ ★ ☆ ☆ ☆</td> |
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| 714 | -<td style="text-align:center"><strong>Fail</strong></td> |
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| 715 | -</tr> |
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| 716 | -<tr> |
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| 717 | -<td style="text-align:left"><a href="../PTPRK">PTPRK</a></td> |
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| 718 | -<td style="text-align:center">2</td> |
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| 719 | -<td style="text-align:center">★ ★ ☆ ☆ ☆</td> |
|
| 720 | -<td style="text-align:center"><strong>Fail</strong></td> |
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| 721 | -</tr> |
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| 722 | -<tr> |
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| 723 | -<td style="text-align:left"><a href="../ZFAT">ZFAT</a></td> |
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| 724 | -<td style="text-align:center">2</td> |
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| 725 | -<td style="text-align:center">★ ★ ☆ ☆ ☆</td> |
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| 726 | -<td style="text-align:center"><strong>Fail</strong></td> |
|
| 727 | -</tr> |
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| 728 | -<tr> |
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| 729 | -<td style="text-align:left"><a href="../ARID1B">ARID1B</a></td> |
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| 730 | -<td style="text-align:center">2</td> |
|
| 731 | -<td style="text-align:center">★ ★ ☆ ☆ ☆</td> |
|
| 732 | -<td style="text-align:center"><strong>Fail</strong></td> |
|
| 733 | -</tr> |
|
| 734 | -<tr> |
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| 735 | -<td style="text-align:left"><a href="../RUNX1">RUNX1</a></td> |
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| 736 | -<td style="text-align:center">2</td> |
|
| 737 | -<td style="text-align:center">★ ★ ☆ ☆ ☆</td> |
|
| 738 | -<td style="text-align:center"><strong>Fail</strong></td> |
|
| 739 | -</tr> |
|
| 740 | -<tr> |
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| 741 | -<td style="text-align:left"><a href="../CBLB">CBLB</a></td> |
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| 742 | -<td style="text-align:center">2</td> |
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| 743 | -<td style="text-align:center">★ ★ ☆ ☆ ☆</td> |
|
| 744 | -<td style="text-align:center"><strong>Fail</strong></td> |
|
| 745 | -</tr> |
|
| 746 | -<tr> |
|
| 747 | -<td style="text-align:left"><a href="../SYK">SYK</a></td> |
|
| 748 | -<td style="text-align:center">2</td> |
|
| 749 | -<td style="text-align:center">★ ★ ☆ ☆ ☆</td> |
|
| 750 | -<td style="text-align:center"><strong>Fail</strong></td> |
|
| 751 | -</tr> |
|
| 752 | -<tr> |
|
| 753 | -<td style="text-align:left"><a href="../WAC">WAC</a></td> |
|
| 754 | -<td style="text-align:center">2</td> |
|
| 755 | -<td style="text-align:center">★ ★ ☆ ☆ ☆</td> |
|
| 756 | -<td style="text-align:center"><strong>Fail</strong></td> |
|
| 757 | -</tr> |
|
| 758 | -<tr> |
|
| 759 | -<td style="text-align:left"><a href="../ZBTB7A">ZBTB7A</a></td> |
|
| 760 | -<td style="text-align:center">2</td> |
|
| 761 | -<td style="text-align:center">★ ☆ ☆ ☆ ☆</td> |
|
| 762 | -<td style="text-align:center"><strong>Fail</strong></td> |
|
| 763 | -</tr> |
|
| 764 | -<tr> |
|
| 765 | -<td style="text-align:left"><a href="../RARA">RARA</a></td> |
|
| 766 | -<td style="text-align:center">2</td> |
|
| 767 | -<td style="text-align:center">★ ☆ ☆ ☆ ☆</td> |
|
| 768 | -<td style="text-align:center"><strong>Fail</strong></td> |
|
| 769 | -</tr> |
|
| 770 | -<tr> |
|
| 771 | -<td style="text-align:left"><a href="../DNMT3A">DNMT3A</a></td> |
|
| 772 | -<td style="text-align:center">2</td> |
|
| 773 | -<td style="text-align:center">★ ☆ ☆ ☆ ☆</td> |
|
| 774 | -<td style="text-align:center"><strong>Fail</strong></td> |
|
| 775 | -</tr> |
|
| 776 | -<tr> |
|
| 777 | -<td style="text-align:left"><a href="../MARK1">MARK1</a></td> |
|
| 778 | -<td style="text-align:center">2</td> |
|
| 779 | -<td style="text-align:center">★ ☆ ☆ ☆ ☆</td> |
|
| 780 | -<td style="text-align:center"><strong>Fail</strong></td> |
|
| 781 | -</tr> |
|
| 782 | -</tbody> |
|
| 783 | -</table> |
|
| 784 | -<h2 id="see-also">See Also</h2> |
|
| 785 | -<p>The primary data supporting each of the mutations reported in this study can be viewed in <a href="https://www.bcgsc.ca/downloads/morinlab/GAMBL/Reddy/igv_reports/">IGV reports</a> along with mutations unique to the GAMBL re-analysis.[@drevalRevisitingReddyDLBCL2023]</p> |
|
| 786 | -<h1 id="references">References</h1> |
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| 787 | -
|
|
| 788 | -</body>
|
|
| 789 | -</html>
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